Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000154.1 Hibiscus syriacus cultivar Beakdansim tig00000274_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49996

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2613--2692
23
3.8
21
77
8
72
26
33
25
15
1.95
2655--2692
20
1.9
20
88
0
58
26
36
26
10
1.89
6446--6511
22
3.0
23
88
6
100
16
27
33
22
1.96
10257--10296
21
1.9
21
89
0
62
37
7
2
52
1.43
17255--17370
54
2.1
55
83
13
143
66
0
6
25
1.22
17301--17406
45
2.3
45
79
10
117
66
0
7
26
1.18
17402--17440
17
2.2
17
90
4
60
76
2
10
10
1.10
20061--20103
20
2.2
20
86
0
59
34
20
13
30
1.92
22721--22760
13
3.0
13
81
3
53
62
0
25
12
1.30
30062--30104
20
2.2
20
86
0
59
34
20
13
30
1.92
30515--30582
34
2.0
34
88
0
100
41
7
5
45
1.56
30554--30630
37
2.0
38
87
10
111
36
10
5
48
1.60
30584--30614
11
2.8
11
95
0
53
38
12
6
41
1.69
30603--30932
36
8.8
38
74
14
215
41
9
4
44
1.58
30603--30932
38
8.8
36
76
11
229
41
9
4
44
1.58
30641--30835
109
1.8
106
86
5
284
43
8
4
43
1.56
31182--31221
3
12.3
3
89
10
53
62
0
0
37
0.95
31187--31220
17
2.0
17
100
0
68
58
0
0
41
0.98
31215--31260
3
15.0
3
86
4
65
34
0
2
63
1.07
31213--31260
25
1.9
25
91
0
78
35
0
2
62
1.07
31221--31258
19
2.0
19
94
0
67
34
0
2
63
1.09
32938--32985
19
2.7
18
84
9
62
18
4
4
72
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44964--45056
32
3.0
31
88
3
141
32
22
20
24
1.98
47788--47873
28
3.1
28
94
0
145
39
11
22
26
1.88
48208--48274
3
22.7
3
78
14
68
35
0
0
64
0.94
48216--48274
24
2.5
24
81
13
77
35
0
0
64
0.94

Tables:   1

The End!