genome.fa.s1540.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001540.1 Hibiscus syriacus cultivar Beakdansim tig00003025_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  139098

Tables:   1   

This is table  1  of  1  ( 84 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1134--1721	57	10.4	57	84	3	692	33	16	12	37	1.87
1134--1721	113	5.2	113	84	4	672	33	16	12	37	1.87
2057--2112	22	2.7	20	78	10	67	23	23	17	35	1.95
10350--10402	19	2.8	19	80	5	63	83	0	16	0	0.66
10349--10402	23	2.4	22	81	6	63	83	0	16	0	0.65
10360--10400	18	2.2	18	86	4	55	82	0	17	0	0.66
11529--11821	88	3.3	86	81	5	304	32	22	12	32	1.92
11613--11821	44	4.8	43	72	10	149	32	23	11	32	1.90
11530--11849	176	1.8	176	80	4	385	31	24	13	31	1.93
17742--17795	21	2.6	21	96	0	99	42	0	11	46	1.39
17777--17808	13	2.4	14	94	5	57	40	0	9	50	1.35
17756--17828	34	2.1	35	84	7	94	43	0	9	46	1.36
17765--17895	67	2.0	65	81	3	154	49	3	6	41	1.43
17802--17919	36	3.5	34	82	8	118	52	5	4	38	1.43
17874--17961	41	2.2	40	87	4	122	48	7	3	39	1.49
17830--17993	36	4.4	37	79	9	163	49	7	5	37	1.55
18081--18134	13	3.9	14	85	7	65	20	1	1	75	0.98
18081--18134	27	1.9	29	85	7	76	20	1	1	75	0.98
19199--19260	30	2.0	32	84	9	83	25	6	3	64	1.33
28820--28974	59	2.6	59	78	7	159	28	16	4	50	1.64
29199--29480	2	150.0	2	64	27	86	39	1	6	52	1.36
29200--29498	7	41.7	7	67	19	138	38	2	5	53	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29235--29372	47	2.8	50	86	8	185	39	0	7	52	1.34
29355--29489	49	2.7	51	82	11	154	39	2	3	54	1.34
29229--29519	13	23.1	13	71	17	145	38	1	4	54	1.32
29575--29658	39	2.2	39	85	8	109	35	29	22	11	1.90
39027--39062	2	18.0	2	100	0	72	50	0	0	50	1.00
41090--41171	7	11.6	7	74	17	53	52	3	1	42	1.26
41098--41137	16	2.6	16	88	7	57	57	0	0	42	0.98
41095--41141	21	2.2	21	92	0	76	57	0	0	42	0.98
45090--45138	24	2.0	24	96	0	89	32	12	10	44	1.75
50771--50826	29	1.9	29	85	0	76	50	14	10	25	1.75
52517--52568	24	2.1	25	92	3	88	30	13	9	46	1.75
59816--59852	19	1.9	19	94	0	65	72	8	10	8	1.27
63063--63132	21	3.1	24	73	19	60	71	2	0	25	1.00
63097--63132	16	2.2	16	100	0	72	75	0	0	25	0.81
64797--64829	6	5.7	6	85	7	50	12	0	3	84	0.72
70771--70844	17	4.2	18	77	16	66	56	2	1	39	1.22
70771--70960	7	27.7	7	70	20	100	52	5	1	40	1.32
70781--71038	14	18.0	14	69	22	110	50	7	1	39	1.40
70817--70892	32	2.3	32	86	8	109	52	6	1	39	1.36
70829--70934	39	2.6	40	80	8	117	50	7	0	40	1.37
70829--71023	53	3.7	54	73	20	162	49	8	1	40	1.40
70998--71038	7	6.1	7	80	8	50	41	9	2	46	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77723--77791	31	2.3	31	80	14	74	42	10	20	27	1.84
78161--78218	30	1.9	30	89	6	91	27	3	32	36	1.74
80329--80361	6	5.0	7	85	14	52	45	24	0	30	1.53
80329--80361	13	2.5	13	100	0	66	45	24	0	30	1.53
80660--80703	23	1.9	23	90	0	70	27	29	27	15	1.96
80768--80805	17	2.2	17	86	9	51	34	18	2	44	1.64
80953--80986	14	2.4	14	90	0	50	52	11	2	32	1.53
87853--87934	29	2.7	32	88	9	127	43	7	18	30	1.77
88294--88351	30	1.9	30	89	6	91	25	1	32	39	1.66
89043--89108	31	2.2	31	81	8	73	37	7	19	34	1.80
91483--91530	2	24.0	2	100	0	96	50	0	0	50	1.00
93727--93791	22	2.7	26	77	22	68	41	3	9	46	1.51
93749--93795	23	2.1	23	88	4	69	38	4	8	48	1.53
93772--93931	42	4.1	40	86	7	220	40	7	6	45	1.59
100482--100528	23	2.0	23	84	8	60	53	14	4	27	1.60
101234--101672	54	8.1	54	85	2	569	34	18	17	29	1.94
102030--102214	95	1.9	95	82	0	226	27	21	17	33	1.96
108317--108709	54	7.3	54	80	3	432	33	19	16	30	1.94
108317--108709	162	2.4	162	85	1	511	33	19	16	30	1.94
116567--116608	13	3.1	14	77	19	52	73	0	2	23	0.94
116645--116710	25	2.6	26	79	13	75	42	7	4	45	1.53
116724--116823	52	1.9	53	83	6	132	43	4	7	46	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116782--116868	36	2.4	36	90	0	138	40	3	6	49	1.46
116778--116903	36	3.6	36	81	4	107	42	6	4	46	1.50
117603--117654	28	1.9	26	84	7	68	57	3	17	21	1.55
117697--117725	14	2.0	15	93	6	51	68	10	0	20	1.18
119786--120088	88	3.4	88	82	0	365	32	16	21	30	1.95
119792--120050	44	5.9	44	71	10	154	33	15	20	30	1.94
119926--120088	44	3.7	44	71	15	120	30	17	21	30	1.96
124759--124787	14	2.1	14	100	0	58	55	0	24	20	1.44
130939--130982	15	2.9	15	86	6	54	70	0	27	2	0.99
132566--132843	72	3.9	69	74	6	205	32	24	9	34	1.87
132566--132841	36	7.7	35	75	7	146	31	24	9	34	1.87
132601--132843	108	2.3	107	80	8	269	31	23	9	34	1.88
132600--132843	36	6.8	36	75	7	185	31	24	9	34	1.88
132871--132953	33	2.5	33	90	3	132	28	15	10	44	1.80
133143--133308	71	2.3	71	82	0	188	37	28	18	15	1.91
133156--133335	71	2.5	71	76	7	175	36	31	16	16	1.90
133751--134219	236	2.0	236	96	0	875	37	13	12	36	1.83
136627--136834	47	4.4	47	89	3	303	21	22	11	45	1.83

Tables:   1

The End!