Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001541.1 Hibiscus syriacus cultivar Beakdansim tig00003028_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65449

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8262--8357
23
4.1
23
80
7
95
25
18
17
38
1.93
14275--14332
29
2.0
29
93
0
98
25
17
17
39
1.91
18624--18652
6
5.0
6
91
8
51
17
34
31
17
1.93
20187--20231
18
2.4
18
85
10
56
40
2
6
51
1.41
29799--29862
19
3.6
17
76
23
69
28
20
26
25
1.99
30456--30528
18
3.9
18
80
7
92
20
21
31
26
1.98
30781--30826
2
23.5
2
95
4
85
50
0
0
50
1.00
31545--31582
2
19.0
2
100
0
76
50
0
0
50
1.00
33064--33134
8
8.4
8
82
16
54
76
0
4
19
0.96
33099--33140
4
10.2
4
94
5
75
73
0
2
23
0.94
33231--33266
12
2.8
13
83
8
56
83
11
0
5
0.80
33435--33468
2
17.0
2
100
0
68
50
0
0
50
1.00
33495--33543
23
2.1
24
81
11
57
59
0
4
36
1.17
34013--34116
37
2.8
37
91
0
163
30
15
13
40
1.86
36437--36500
5
12.8
5
73
12
51
7
21
48
21
1.75
36430--36487
17
3.3
17
87
4
80
10
20
46
22
1.81
36437--36500
19
3.5
18
89
8
94
7
21
48
21
1.75
43572--43623
5
10.8
5
81
8
54
7
21
50
21
1.73
43577--43623
19
2.5
18
93
6
76
8
21
48
21
1.76
43572--43625
14
3.8
14
78
11
56
9
20
50
20
1.75
43650--43685
9
3.9
9
92
7
63
33
33
22
11
1.89
44415--46230
106
17.2
106
91
0
2784
23
18
24
34
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47463--47809
172
2.0
173
90
3
547
25
18
20
35
1.95
47844--47918
7
10.0
7
73
21
55
1
12
6
80
0.97
47845--47921
16
4.8
16
73
17
61
1
10
7
80
0.96
52364--52394
2
15.5
2
100
0
62
51
0
0
48
1.00
52445--52521
27
2.7
29
73
15
70
67
5
2
24
1.24
53168--53268
37
2.7
37
85
0
121
33
11
12
41
1.80
55442--55469
2
14.0
2
100
0
56
50
0
0
50
1.00
58878--58933
21
2.8
20
76
10
53
41
0
3
55
1.17
59744--59820
29
2.6
31
81
8
88
46
3
24
24
1.69
63324--63475
82
1.9
81
86
5
220
44
5
7
42
1.56
63397--63509
35
3.2
34
72
12
93
45
4
6
44
1.49

Tables:   1

The End!