genome.fa.s1542.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001542.1 Hibiscus syriacus cultivar Beakdansim tig00003030_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  113757

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1815--1975	67	2.5	64	80	10	175	26	19	23	30	1.98
18052--18109	27	2.2	26	81	9	64	36	0	22	41	1.54
18900--19296	54	7.4	53	86	4	501	36	20	15	28	1.93
22484--23340	45	19.1	45	88	0	1205	40	13	20	25	1.89
22724--22795	22	3.2	22	66	24	60	40	16	22	20	1.91
30356--30435	22	3.7	22	79	11	85	23	31	26	18	1.98
30356--30414	23	2.6	22	91	2	91	23	32	25	18	1.97
32924--32953	11	2.7	11	94	0	51	50	3	0	46	1.18
37025--37364	54	6.3	54	85	2	432	34	19	17	29	1.95
37991--38020	15	2.0	15	93	0	51	50	36	6	6	1.55
38988--39071	32	2.6	31	83	7	105	30	26	8	34	1.86
47902--47935	11	3.1	11	100	0	68	0	0	8	91	0.43
47894--47935	22	1.9	22	90	0	66	2	2	7	88	0.69
47873--47935	12	5.4	12	78	3	58	6	3	4	85	0.81
49595--49634	21	1.9	21	85	10	55	40	15	7	37	1.75
50461--50507	18	2.7	18	93	3	78	31	8	31	27	1.87
51079--51173	28	3.4	28	95	1	165	45	33	7	13	1.72
53097--53439	77	4.5	77	85	4	439	32	14	11	41	1.82
53420--53982	39	14.5	39	90	0	815	31	16	16	35	1.91
54006--54380	135	2.8	136	85	2	479	33	17	21	26	1.96
55953--56023	17	4.2	16	71	20	56	15	2	4	77	1.04
55985--56034	22	2.3	21	83	12	66	20	0	6	74	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55985--56030	23	2.1	22	88	8	67	21	0	4	73	1.00
55954--56038	9	10.4	8	77	17	59	18	2	4	74	1.11
58116--58204	2	44.0	2	95	2	160	49	2	0	48	1.13
58483--58634	70	2.2	69	90	4	234	30	9	9	50	1.67
60723--60847	31	4.0	31	80	9	146	31	20	18	30	1.96
65557--65628	30	2.4	30	92	0	117	30	23	19	26	1.98
65615--65739	31	4.0	31	79	11	139	32	19	19	29	1.96
66805--66839	18	1.9	18	100	0	70	25	34	28	11	1.91
71370--71413	22	2.0	22	100	0	88	54	18	4	22	1.61
71374--71422	22	2.2	22	85	3	62	61	16	4	18	1.50
73841--73896	19	3.1	18	72	15	53	55	3	0	41	1.17
79727--79786	28	2.1	28	84	9	77	36	3	1	58	1.25
80127--80160	16	2.2	16	90	10	54	67	8	0	23	1.18
80064--80152	46	1.9	46	83	0	115	60	8	4	25	1.46
80463--80521	30	2.0	30	86	0	82	33	8	13	44	1.74
80593--80670	31	2.5	31	77	2	77	47	12	16	23	1.81
92215--92306	23	3.9	24	91	2	143	27	25	21	26	2.00
92463--92510	14	3.5	14	91	2	71	45	31	0	22	1.53
95166--95193	5	5.6	5	100	0	56	17	0	0	82	0.68
103080--103159	21	3.8	21	96	1	142	40	11	20	28	1.86
104912--104951	20	2.0	20	90	0	62	37	2	7	52	1.43
106322--106365	22	2.0	22	100	0	88	36	13	18	31	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111600--111694	32	2.9	33	84	3	122	28	29	24	17	1.97
112721--112775	25	2.3	24	81	6	67	21	10	18	49	1.78

Tables:   1

The End!