Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001543.1 Hibiscus syriacus cultivar Beakdansim tig00003032_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51546

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
426--475
12
4.1
12
82
5
64
34
4
62
0
1.14
425--480
25
2.2
25
93
3
94
35
3
58
1
1.26
437--494
25
2.3
25
85
5
73
37
3
56
1
1.26
1253--1538
69
4.2
67
80
8
294
24
25
23
26
2.00
1525--1553
15
1.9
15
100
0
58
13
34
27
24
1.93
3389--3444
27
2.2
25
81
12
62
30
3
1
64
1.21
5250--5305
22
2.6
22
97
2
105
41
0
3
55
1.17
5329--5388
31
1.9
31
96
0
111
43
5
6
45
1.52
5377--5423
13
3.9
12
86
5
60
42
2
2
53
1.25
5390--5425
13
2.8
13
95
4
65
44
0
0
55
0.99
5412--5488
22
3.5
22
92
0
127
41
0
9
49
1.34
5510--5569
31
2.1
27
82
17
70
43
3
6
46
1.46
5249--5593
181
1.9
182
92
0
584
41
2
6
50
1.40
5431--5723
147
2.0
147
90
2
464
40
3
8
48
1.49
5578--5634
22
2.6
22
97
0
105
40
0
8
50
1.33
5734--5762
11
2.7
11
94
5
51
27
0
0
72
0.85
6136--6331
3
62.7
3
70
17
80
58
1
4
35
1.28
6148--6278
7
18.7
7
68
18
60
61
1
1
35
1.15
6138--6278
25
5.6
25
73
15
105
60
1
2
36
1.18
6122--6244
40
3.0
40
72
11
106
60
4
2
33
1.29
9456--9545
7
12.7
7
72
2
54
23
0
26
50
1.50
9456--9501
21
2.2
21
88
7
67
26
0
28
45
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9484--9544
22
2.9
21
83
9
79
22
0
22
54
1.45
24283--24332
20
2.5
20
96
0
91
42
22
20
16
1.89
24507--24579
20
3.7
20
83
7
103
20
21
16
41
1.90
24590--24643
20
2.7
20
91
0
81
25
25
14
33
1.95
24740--24786
20
2.3
20
88
0
67
19
19
21
40
1.92
24783--24849
20
3.3
20
71
8
64
25
26
16
31
1.96
24904--24974
20
3.5
20
75
7
81
21
14
18
46
1.83
24903--24991
40
2.2
39
86
7
117
19
15
21
43
1.87
26550--26588
19
2.1
19
85
9
53
71
0
2
25
0.98
27264--27315
24
2.1
26
85
7
72
69
3
7
19
1.29
34649--34796
43
3.4
43
91
1
235
45
3
7
43
1.48
42394--42492
51
2.1
47
88
11
148
35
6
15
43
1.71
42406--42508
51
2.1
48
86
12
140
36
4
11
46
1.62
43974--44050
29
2.6
29
73
17
77
33
7
10
48
1.66
44397--44497
6
16.0
6
72
23
66
75
2
1
19
1.03
44397--44505
19
5.8
17
71
21
76
75
2
1
20
1.02
44381--44452
34
2.1
34
82
10
85
77
5
1
15
1.01
44380--44519
58
2.3
58
74
18
135
75
4
3
17
1.11
44377--44495
9
14.1
8
71
17
55
75
4
2
17
1.07
44411--44505
11
8.2
12
70
23
62
75
1
2
21
0.96
44395--44521
58
2.2
59
81
8
152
74
3
3
18
1.08
44556--44599
22
2.0
22
90
0
70
65
2
2
29
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44561--44599
3
12.7
3
83
5
51
66
2
0
30
1.05
44564--44611
19
2.6
19
87
9
64
68
4
0
27
1.07
44570--44612
16
2.8
15
83
13
52
72
2
0
25
0.97
45553--45591
19
2.1
18
90
4
60
10
20
30
38
1.86
45805--45852
10
4.6
10
80
15
53
66
2
2
29
1.14
45805--45855
3
16.0
3
78
15
50
66
1
1
29
1.13
45805--45856
23
2.3
22
83
9
70
67
1
1
28
1.12
45854--46264
35
11.5
34
73
22
255
44
6
2
47
1.41
45965--46054
48
1.9
46
88
6
137
44
4
3
47
1.39
46001--46226
108
2.1
106
86
11
311
42
5
3
48
1.41
46229--46312
41
2.0
42
81
6
100
44
8
1
46
1.41
46295--46331
2
20.0
2
84
15
53
48
0
0
51
1.00
47076--47896
85
9.7
85
84
3
1016
24
18
22
34
1.96
47019--47896
170
5.2
171
87
2
1150
24
18
22
34
1.96
47076--47896
341
2.4
340
90
3
1253
24
18
22
34
1.96
48678--48926
93
2.7
95
80
7
287
31
16
17
34
1.93

Tables:   1

The End!