genome.fa.s1544.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001544.1 Hibiscus syriacus cultivar Beakdansim tig00003033_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116281

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3767--3814	20	2.5	20	89	3	71	52	4	12	31	1.58
8101--8168	22	3.1	22	79	10	68	27	17	14	39	1.89
8101--8179	22	3.6	22	78	8	63	27	18	16	36	1.93
10747--10817	31	2.3	31	85	0	88	32	22	7	38	1.81
10760--10824	31	2.1	30	88	2	94	26	27	10	35	1.90
17993--18039	3	15.0	3	86	8	67	31	2	2	63	1.18
23033--23098	34	1.9	34	96	0	123	31	9	15	43	1.77
23597--23649	21	2.5	21	93	0	88	28	28	22	20	1.99
23845--23899	13	4.2	13	75	13	58	49	12	3	34	1.59
23885--23983	33	3.0	33	94	1	164	45	15	7	32	1.73
23978--24017	21	1.9	21	94	0	71	47	7	15	30	1.72
26324--26369	12	3.6	12	81	16	56	17	19	17	45	1.85
26323--26362	15	2.9	14	85	14	57	20	17	15	47	1.83
31869--31969	39	2.6	38	88	3	130	39	8	4	46	1.57
32333--32433	39	2.6	39	90	0	148	38	4	7	48	1.54
31864--32775	464	2.0	454	92	2	1520	43	5	7	43	1.55
36562--36604	2	21.5	2	90	0	68	2	2	46	48	1.27
42166--42194	3	9.7	3	100	0	58	34	0	0	65	0.93
42951--42987	8	4.6	8	100	0	74	64	0	21	13	1.27
43510--43551	17	2.3	18	84	8	50	54	2	4	38	1.34
46622--46704	40	2.1	40	95	0	148	49	10	19	20	1.78
48938--49191	92	2.8	92	96	0	454	35	16	13	35	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48932--49294	92	4.0	90	87	3	415	33	16	14	34	1.90
52086--53114	123	8.3	123	89	1	1481	41	14	18	25	1.89
53735--53794	28	2.1	28	85	11	79	46	13	1	38	1.53
53914--53955	4	10.5	4	84	0	57	47	19	2	30	1.62
53908--53987	12	6.9	12	69	20	55	46	18	6	28	1.73
53912--53955	12	3.7	12	87	0	70	47	18	2	31	1.61
55081--55447	43	8.5	43	86	2	459	35	23	21	20	1.96
64197--64231	18	1.9	18	88	0	52	48	20	2	28	1.63
66817--66895	39	2.0	39	95	0	140	32	5	18	43	1.72
68238--68282	18	2.5	18	88	0	63	48	24	2	24	1.62
68238--68288	18	2.8	18	85	5	59	49	23	1	25	1.61
70784--70835	25	2.1	25	88	0	77	26	40	9	23	1.85
70924--70948	12	2.1	12	100	0	50	8	28	48	16	1.74
70952--71036	40	2.2	36	81	15	116	48	0	0	51	1.00
70959--71034	40	1.9	40	94	0	134	48	0	0	51	1.00
70952--71059	40	2.8	39	76	19	111	47	0	0	52	1.00
72002--72107	2	53.0	2	100	0	212	50	0	0	50	1.00
72496--72538	21	2.0	21	82	8	52	60	9	0	30	1.28
72553--72900	4	86.8	4	84	2	268	51	8	22	18	1.72
73051--73099	21	2.3	21	82	3	62	55	10	0	34	1.34
76323--76360	15	2.5	16	87	12	62	71	5	2	21	1.19
77784--77855	3	24.3	3	78	13	78	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77784--77855	22	3.2	25	83	16	86	58	0	0	41	0.98
78028--78997	75	12.9	75	97	0	1787	35	21	18	23	1.95
79444--79495	22	2.4	22	93	0	86	38	13	9	38	1.77
82075--82352	92	3.0	92	94	0	484	34	23	14	28	1.93
90749--90819	3	23.3	3	79	11	65	56	0	0	43	0.99
90749--90819	22	3.3	22	84	9	85	56	0	0	43	0.99
94244--94286	21	2.0	21	90	0	68	60	13	0	25	1.34
94492--94534	21	2.0	21	90	0	68	60	13	0	25	1.34
94111--94623	248	2.1	250	98	0	994	53	10	4	31	1.55
98786--98862	29	2.7	29	93	0	127	61	6	6	25	1.45
99838--99924	42	2.1	42	84	0	111	40	21	11	26	1.87
100062--100157	42	2.3	41	82	3	120	33	23	20	21	1.97
99841--101872	233	8.7	233	87	1	2760	35	17	15	31	1.91
100774--100862	42	2.1	42	79	2	99	34	19	17	28	1.95
100988--101091	42	2.5	41	82	4	120	29	22	24	24	1.99
101252--101327	20	3.7	20	75	13	73	35	19	21	23	1.96
103501--103542	2	21.0	2	100	0	84	50	50	0	0	1.00
103495--103540	10	4.4	11	94	5	62	47	47	2	2	1.26
103542--103602	2	30.5	2	96	0	113	49	0	1	49	1.10
112080--112109	3	9.7	3	92	7	51	70	0	0	30	0.88
112079--112109	16	1.9	16	100	0	62	70	0	0	29	0.87
112083--112110	13	2.2	13	100	0	56	71	0	0	28	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112130--112224	23	4.1	23	78	9	86	24	18	17	38	1.92

Tables:   1

The End!