Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001545.1 Hibiscus syriacus cultivar Beakdansim tig00003034_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78070

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2443--2486
15
3.0
14
80
6
52
27
6
6
59
1.49
2779--2813
15
2.2
17
90
10
56
20
11
8
60
1.57
2808--3053
136
1.8
135
84
7
336
29
12
13
45
1.80
4257--4313
29
2.0
29
83
13
73
63
3
1
31
1.22
4585--4626
3
14.3
3
95
5
77
33
0
0
66
0.92
4809--4849
19
2.2
18
87
12
57
26
0
4
68
1.10
10929--10974
11
4.2
11
81
10
58
50
23
6
19
1.71
16405--16455
25
2.0
25
100
0
102
15
7
25
50
1.71
18094--18121
3
9.3
3
100
0
56
32
67
0
0
0.91
20671--20828
21
7.8
20
70
7
77
37
25
17
18
1.93
20796--20988
20
9.6
20
83
5
237
35
27
18
18
1.95
21368--21438
33
2.2
33
94
0
124
11
23
16
47
1.79
21518--21594
21
3.7
21
79
6
93
48
15
22
14
1.81
21579--21635
14
3.7
14
75
20
60
43
22
24
8
1.81
21572--21649
33
2.4
33
95
0
138
47
21
21
8
1.78
21652--21733
33
2.5
33
95
0
146
10
20
19
48
1.79
21710--21774
21
3.1
21
80
4
87
10
24
15
49
1.76
23686--23858
19
9.6
19
78
12
159
45
23
20
10
1.81
23780--23836
14
3.7
14
75
20
51
43
22
22
10
1.84
23761--23853
33
2.8
33
95
0
168
46
21
21
10
1.81
23720--23858
52
2.7
52
74
8
147
46
23
21
9
1.80
23870--23928
14
3.9
14
76
20
64
6
16
28
47
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23854--23977
33
3.7
33
89
1
176
8
16
27
46
1.77
23854--23912
19
3.4
19
77
22
83
6
15
30
47
1.71
25898--25933
14
2.6
14
95
0
63
33
0
22
44
1.53
26040--26138
19
5.4
19
83
14
136
45
17
23
14
1.84
26040--26157
53
2.2
53
96
3
220
44
17
24
13
1.85
26153--26370
53
4.1
52
87
10
293
13
22
17
45
1.84
26147--26356
72
2.9
71
85
8
255
14
22
17
45
1.85
26224--26370
33
4.2
33
78
13
170
13
22
17
46
1.83
26499--26523
12
2.1
12
100
0
50
0
28
0
72
0.86
26698--26744
24
2.0
24
87
8
69
38
21
14
25
1.92
27434--27622
20
9.4
20
84
4
211
18
17
26
36
1.94
29084--29294
9
22.4
9
68
20
71
71
3
4
20
1.17
29143--29216
8
8.8
8
76
15
53
79
6
2
10
1.01
29219--29307
3
31.3
3
76
17
68
67
0
3
29
1.07
29305--29339
2
17.5
2
100
0
70
51
0
0
48
1.00
29246--29317
31
2.3
32
83
9
87
68
0
2
29
1.04
29219--29325
39
2.8
37
76
18
103
64
0
2
32
1.08
31209--31384
65
2.8
65
83
7
213
26
15
20
37
1.92
45766--45803
20
1.9
20
88
0
58
18
21
36
23
1.95
45790--45848
23
2.6
23
84
10
84
33
22
25
18
1.96
48112--48320
65
3.2
63
82
10
201
29
25
17
27
1.98
48161--48322
65
2.5
65
84
3
202
30
25
16
27
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54856--54919
21
3.0
21
81
4
76
23
40
6
29
1.79
55678--55721
21
2.1
21
86
0
61
9
34
15
40
1.79
56684--56896
65
3.3
65
81
6
220
30
25
16
27
1.97
59244--59283
20
2.0
21
85
5
55
25
17
10
47
1.78
61335--61387
20
2.7
20
96
0
97
24
20
33
20
1.97
61876--62013
9
15.1
9
69
23
60
73
4
5
17
1.18
61875--62006
11
12.9
10
68
20
51
73
3
5
17
1.17
61930--61988
13
4.5
12
75
24
57
76
5
1
16
1.05
61930--62013
36
2.4
36
77
15
86
76
5
2
15
1.09
62016--62079
3
21.7
3
78
15
55
64
0
3
32
1.10
62037--62114
33
2.5
31
87
8
104
62
0
2
34
1.09
62021--62120
32
3.1
32
85
7
123
61
0
3
36
1.12
69858--70503
59
11.1
59
84
3
799
28
22
10
37
1.88
76725--76781
18
3.2
18
94
0
96
19
38
19
22
1.93
77297--77344
16
3.1
16
85
5
64
39
0
0
60
0.97

Tables:   1

The End!