Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001546.1 Hibiscus syriacus cultivar Beakdansim tig00003036_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47451

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
507--584
21
3.8
21
89
8
115
39
8
20
30
1.83
507--584
40
1.9
41
92
2
131
39
8
20
30
1.83
2307--2345
19
2.0
20
90
5
62
38
2
7
51
1.44
3706--3749
22
2.0
22
100
0
88
36
13
18
31
1.90
8974--9068
32
2.9
33
84
3
122
28
29
24
17
1.97
10096--10170
27
2.7
27
85
4
87
24
9
18
48
1.77
14314--14340
2
13.5
2
100
0
54
48
0
0
51
1.00
17329--17423
31
3.4
28
75
17
81
32
6
0
61
1.21
17393--17450
18
3.3
16
77
22
55
32
3
1
62
1.22
21195--21235
20
2.0
21
90
4
66
24
14
24
36
1.93
26518--26600
14
6.5
14
76
20
65
13
12
15
59
1.62
26521--26586
24
2.8
24
92
0
105
13
13
15
57
1.66
26540--26614
38
2.0
38
89
0
114
13
9
16
61
1.56
26525--26572
10
4.4
10
80
19
60
16
14
12
56
1.68
26578--26632
24
2.3
24
83
0
65
16
7
16
60
1.57
26598--26971
176
2.1
177
95
0
669
42
13
6
37
1.71
28018--28054
19
2.1
18
90
10
58
45
5
10
37
1.62
28056--28080
13
1.9
13
100
0
50
48
8
0
44
1.32
28173--28199
13
2.1
13
100
0
54
44
7
7
40
1.60
36252--36317
18
3.7
18
97
0
123
21
22
24
31
1.98
38000--38046
23
2.0
24
87
4
69
51
2
0
46
1.13
39784--39808
7
3.6
7
100
0
50
12
0
24
64
1.27
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40868--40927
29
2.0
31
83
6
79
35
5
16
43
1.70
41007--41063
22
2.7
21
84
10
73
24
33
21
21
1.97
41084--41157
20
3.7
19
75
10
67
21
21
22
33
1.97
41084--41166
41
2.0
41
84
13
109
22
20
24
32
1.98
41515--41584
34
2.1
32
86
5
95
31
15
30
22
1.95
41756--41811
23
2.4
23
100
0
112
26
39
8
25
1.85
42465--42512
19
2.5
20
82
3
62
52
6
12
29
1.63
43738--43797
29
2.0
31
87
6
88
36
5
16
41
1.70
43877--43975
21
4.7
21
83
12
123
23
37
19
20
1.94
43997--44069
20
3.7
18
79
17
74
20
24
21
32
1.97
46454--46485
15
2.3
15
89
10
50
37
21
0
40
1.54
47156--47451
3
99.3
3
92
7
498
0
33
0
66
0.92

Tables:   1

The End!