Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001547.1 Hibiscus syriacus cultivar Beakdansim tig00003041_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10425128
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 2 of 51
Found at i:158951 original size:16 final size:16
Alignment explanation
Indices: 158930--158962 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
158920 TTAATGTATG
158930 TTCGTGAATGAAACAA
1 TTCGTGAATGAAACAA
158946 TTCGTGAATGAAACAA
1 TTCGTGAATGAAACAA
158962 T
1 T
158963 CTGCAATATG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.42, C:0.12, G:0.18, T:0.27
Consensus pattern (16 bp):
TTCGTGAATGAAACAA
Found at i:162551 original size:17 final size:18
Alignment explanation
Indices: 162512--162558 Score: 69
Period size: 18 Copynumber: 2.7 Consensus size: 18
162502 TGTTTCTGAG
162512 GGAATTGGAATCTGTGAA
1 GGAATTGGAATCTGTGAA
* *
162530 GGAATTGAAATCTGT-CA
1 GGAATTGGAATCTGTGAA
162547 GGAATTGGAATC
1 GGAATTGGAATC
162559 CAATTCTATA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
17 12 0.46
18 14 0.54
ACGTcount: A:0.34, C:0.09, G:0.30, T:0.28
Consensus pattern (18 bp):
GGAATTGGAATCTGTGAA
Found at i:162640 original size:44 final size:46
Alignment explanation
Indices: 162542--162641 Score: 111
Period size: 44 Copynumber: 2.2 Consensus size: 46
162532 AATTGAAATC
* * *
162542 TGTCAGGAATTGGAATCCAATTCTATATTCTGTTTGGTTGGCAGGAAA
1 TGTCA-GAATTGGAATCCAATTCCATAATCTGTTTGGTT-GCAGCAAA
*
162590 T-T--GAATTGGAATCCAATTCCATAATCTGTTTGGTT-CA-CACA
1 TGTCAGAATTGGAATCCAATTCCATAATCTGTTTGGTTGCAGCAAA
162631 TGTCAGAATTG
1 TGTCAGAATTG
162642 ATTTCAGTAA
Statistics
Matches: 45, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
41 3 0.07
42 3 0.07
44 37 0.82
47 1 0.02
48 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.21, T:0.36
Consensus pattern (46 bp):
TGTCAGAATTGGAATCCAATTCCATAATCTGTTTGGTTGCAGCAAA
Found at i:163415 original size:248 final size:244
Alignment explanation
Indices: 162906--163495 Score: 787
Period size: 253 Copynumber: 2.3 Consensus size: 244
162896 CATCCGAGAC
*
162906 CCGACCCGACCAAAATAAAGTTTCACCCGA-CCGA-CCGAATATATGAATTAGAAACCCGACCCA
1 CCGACCCGACCAAAATAAAGTTTCACCCGACCCGACCCGAATATATGAATTAGAAACCCGACCCG
* * * *
162969 ATCCGAAATAATAAAAATTTTATTTTTATTCAATAAAAACAGTGACTAATTGGAAAATATATAGA
66 ACCCGAAATAATAAAAA----A-ATTTATTCAATAAAAACAGTGACTAATTGAAAAAAATATAGA
*
163034 GAGAGGGGTATTATTGTAATTATTCCTAAATATATAAGGTAAAATTATAATTTTTTGGGTCGGGT
126 GAGAGGGGTATTATTGTAATTATTCCTAAATATATAAGGTAAAATTATAATTATTT--GTCGGGT
*
163099 CTGGTATTTTTCACCCTAAACCCGAACCCGACCCGAATATAACACTTAAAAAAAAT
189 CGGGTATTTTTCACCCTAAACCCGAACCCGACCCGAATATAACACTTAAAAAAAAT
** *
163155 GACCCGACCCGACCAAAATAAAGTTTCACCCGACCCGACCCGAATATATGAATTAGAAATTCGAT
1 ---CCGACCCGACCAAAATAAAGTTTCACCCGACCCGACCCGAATATATGAATTAGAAACCCGAC
* *
163220 CCGACCCGAAATAATAAAAAAATTTATTCAATAAAAATAGTGACTTAATTGAAAAAAATTATATA
63 CCGACCCGAAATAATAAAAAAATTTATTCAATAAAAACAGTGAC-TAATTGAAAAAAA-TATAGA
*
163285 TAGAGGGGTATTATTGTAATTATTCCTAAATATATAAGGTAAAATTAT-ATATATTT-TCGGGTC
126 GAGAGGGGTATTATTGTAATTATTCCTAAATATATAAGGTAAAATTATAAT-TATTTGTCGGGTC
* *
163348 GGGTATTTTTCATCCTAAACCCGAACTCGACCCGACCCGAATATTACACTT-AAAAAAAT
190 GGGTATTTTTCACCCTAAACCCG-A----ACCCGACCCGAATATAACACTTAAAAAAAAT
163407 -CGACCCGACCAAAATAAAGTTTCACCCGACCCGACCCGACCCAAATATATGAATTAGAAACCCG
1 CCGACCCGACCAAAATAAAGTTTCACCCGACCCGACCCG-----AATATATGAATTAGAAACCCG
*
163471 ACCCGACACGAAATAATAAAAAAAT
61 ACCCGACCCGAAATAATAAAAAAAT
163496 ATTTTTATTC
Statistics
Matches: 304, Mismatches: 19, Indels: 29
0.86 0.05 0.08
Matches are distributed among these distances:
248 66 0.22
249 22 0.07
250 14 0.05
251 56 0.18
252 38 0.12
253 67 0.22
254 41 0.13
ACGTcount: A:0.41, C:0.20, G:0.13, T:0.26
Consensus pattern (244 bp):
CCGACCCGACCAAAATAAAGTTTCACCCGACCCGACCCGAATATATGAATTAGAAACCCGACCCG
ACCCGAAATAATAAAAAAATTTATTCAATAAAAACAGTGACTAATTGAAAAAAATATAGAGAGAG
GGGTATTATTGTAATTATTCCTAAATATATAAGGTAAAATTATAATTATTTGTCGGGTCGGGTAT
TTTTCACCCTAAACCCGAACCCGACCCGAATATAACACTTAAAAAAAAT
Found at i:163488 original size:253 final size:243
Alignment explanation
Indices: 162906--163495 Score: 778
Period size: 248 Copynumber: 2.3 Consensus size: 243
162896 CATCCGAGAC
*
162906 CCGACCCGACCAAAATAAAGTTTCACCCGA-CCGA-CCGAATATATGAATTAGAAACCCGACCCA
1 CCGACCCGACCAAAATAAAGTTTCACCCGACCCGACCCGAATATATGAATTAGAAACCCGACCCG
* * *
162969 ATCCGAAATAATAAAAATTTTATTTTTATTCAATAAAAACAGTGACTAATTGGAAAATATATAGA
66 A-CCGAAATAATAAAAA----A-ATTTATTCAATAAAAACAGTGACTAATTGAAAAAAATATAGA
*
163034 GAGAGGGGTATTATTGTAATTATTCCTAAATATATAAGGTAAAATTATAATTTTTTGGGTCGGGT
125 GAGAGGGGTATTATTGTAATTATTCCTAAATATATAAGGTAAAATTATAATTATTT--GTCGGGT
*
163099 CTGGTATTTTTCACCCTAAACCCGAACCCGACCCGAATATAACACTTAAAAAAAAT
188 CGGGTATTTTTCACCCTAAACCCGAACCCGACCCGAATATAACACTTAAAAAAAAT
** *
163155 GACCCGACCCGACCAAAATAAAGTTTCACCCGACCCGACCCGAATATATGAATTAGAAATTCGAT
1 ---CCGACCCGACCAAAATAAAGTTTCACCCGACCCGACCCGAATATATGAATTAGAAACCCGAC
* *
163220 CCGACCCGAAATAATAAAAAAATTTATTCAATAAAAATAGTGACTTAATTGAAAAAAATTATATA
63 CCGA-CCGAAATAATAAAAAAATTTATTCAATAAAAACAGTGAC-TAATTGAAAAAAA-TATAGA
*
163285 TAGAGGGGTATTATTGTAATTATTCCTAAATATATAAGGTAAAATTAT-ATATATTT-TCGGGTC
125 GAGAGGGGTATTATTGTAATTATTCCTAAATATATAAGGTAAAATTATAAT-TATTTGTCGGGTC
* *
163348 GGGTATTTTTCATCCTAAACCCGAACTCGACCCGACCCGAATATTACACTT-AAAAAAAT
189 GGGTATTTTTCACCCTAAACCCG-A----ACCCGACCCGAATATAACACTTAAAAAAAAT
163407 -CGACCCGACCAAAATAAAGTTTCACCCGACCCGACCCGACCCAAATATATGAATTAGAAACCCG
1 CCGACCCGACCAAAATAAAGTTTCACCCGACCCGACCCG-----AATATATGAATTAGAAACCCG
163471 ACCCGACACGAAATAATAAAAAAAT
61 ACCCGAC-CGAAATAATAAAAAAAT
163496 ATTTTTATTC
Statistics
Matches: 304, Mismatches: 18, Indels: 31
0.86 0.05 0.09
Matches are distributed among these distances:
248 66 0.22
249 22 0.07
250 14 0.05
251 56 0.18
252 39 0.13
253 66 0.22
254 41 0.13
ACGTcount: A:0.41, C:0.20, G:0.13, T:0.26
Consensus pattern (243 bp):
CCGACCCGACCAAAATAAAGTTTCACCCGACCCGACCCGAATATATGAATTAGAAACCCGACCCG
ACCGAAATAATAAAAAAATTTATTCAATAAAAACAGTGACTAATTGAAAAAAATATAGAGAGAGG
GGTATTATTGTAATTATTCCTAAATATATAAGGTAAAATTATAATTATTTGTCGGGTCGGGTATT
TTTCACCCTAAACCCGAACCCGACCCGAATATAACACTTAAAAAAAAT
Found at i:165323 original size:107 final size:106
Alignment explanation
Indices: 165130--165394 Score: 350
Period size: 107 Copynumber: 2.5 Consensus size: 106
165120 GACGAAAGGG
* * * *
165130 CTTCCCAGTTTTAGAGCCAATTTCAACTTCACATCGAAGGATATTGGACTCGAGACAGCACAAGC
1 CTTCCCAGTTTCAGAGCCAATTTCAAATTCACAGCAAAGGATATTGGACTCGAGACAGCACAAGC
165195 TCAACTTCACAATGAAAGGGCGACTGACTGTCAACAAATAAA
66 TCAACTTCACAATGAAAGGGCGACTGACTGTCAACAAAT-AA
* * *
165237 CTTCCCAGTTTCATAGCCAATTTCAAATTCGCAGCAAATGATATTGGACTCGAGACAGCACAAGC
1 CTTCCCAGTTTCAGAGCCAATTTCAAATTCACAGCAAAGGATATTGGACTCGAGACAGCACAAGC
* * **
165302 TCAACTTCACAGTGAAGGGGCGGTTGACTGTCAACAAATAA
66 TCAACTTCACAATGAAAGGGCGACTGACTGTCAACAAATAA
* * * * ** **
165343 TTTCCCAATTCCAGAGCCAATTTCAACTTCATGGCGGAGGATATTGGACTCG
1 CTTCCCAGTTTCAGAGCCAATTTCAAATTCACAGCAAAGGATATTGGACTCG
165395 GAACAATACA
Statistics
Matches: 136, Mismatches: 22, Indels: 1
0.86 0.14 0.01
Matches are distributed among these distances:
106 43 0.32
107 93 0.68
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.24
Consensus pattern (106 bp):
CTTCCCAGTTTCAGAGCCAATTTCAAATTCACAGCAAAGGATATTGGACTCGAGACAGCACAAGC
TCAACTTCACAATGAAAGGGCGACTGACTGTCAACAAATAA
Found at i:165828 original size:120 final size:120
Alignment explanation
Indices: 165662--165895 Score: 371
Period size: 120 Copynumber: 1.9 Consensus size: 120
165652 GCAACTTACA
* * * *
165662 TTGGATTTCAACTTCACAACGAATGATATCTAATTCAAGGCTCAACTTCACAACGAAGTGGCCAT
1 TTGGATTTCAACTTCACAACAAATGATATCTAAGTCAAGGCGCAACTTCACAACGAAGGGGCCAT
* * *
165727 CCACGGTTTCAACTTCACGACGAAGGGAATCGTGCTCACCAGCAACATTACAAGC
66 CCACGATTTCAACTTCACGACGAAGGGAATCGTACCCACCAGCAACATTACAAGC
* *
165782 TTGGATTTCAACTTCACTACAAATGATAT-TAAGTCAAGGCAGCAACTTCACGACGAAGGGGCCA
1 TTGGATTTCAACTTCACAACAAATGATATCTAAGTCAAGGC-GCAACTTCACAACGAAGGGGCCA
165846 TCCACGATTTCAACTTCACGACGAAGGGAATCGTACCCACCAGCAACATT
65 TCCACGATTTCAACTTCACGACGAAGGGAATCGTACCCACCAGCAACATT
165896 CATCTTCAGG
Statistics
Matches: 104, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
119 10 0.10
120 94 0.90
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.23
Consensus pattern (120 bp):
TTGGATTTCAACTTCACAACAAATGATATCTAAGTCAAGGCGCAACTTCACAACGAAGGGGCCAT
CCACGATTTCAACTTCACGACGAAGGGAATCGTACCCACCAGCAACATTACAAGC
Found at i:166039 original size:36 final size:36
Alignment explanation
Indices: 165984--166099 Score: 169
Period size: 36 Copynumber: 3.2 Consensus size: 36
165974 AATTTACTCA
* *
165984 AAACAAAGTTTTGTTTCTCTTGAGACAGTTTCTCTTG
1 AAACAAA-TTTTGTCTCTCTTGAGACAGTTTCCCTTG
*
166021 AAAGAAATTTTGTCTCTCTTGAGACAGTTTCCCTTG
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTG
* * *
166057 AAACAAAATTTATCTCTCTTGAGACAATTTCCCTTG
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTG
166093 AAACAAA
1 AAACAAA
166100 ATCTTTGAAT
Statistics
Matches: 72, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
36 66 0.92
37 6 0.08
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.37
Consensus pattern (36 bp):
AAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTG
Found at i:166180 original size:37 final size:37
Alignment explanation
Indices: 166112--166271 Score: 207
Period size: 37 Copynumber: 4.4 Consensus size: 37
166102 CTTTGAATTT
* *
166112 GTTTTCCTTGAAACTAA-TTTCGTCTCTCTTGAGACA
1 GTTTCCCTTGAAACTAAGTTTTGTCTCTCTTGAGACA
** * * *
166148 GTTTCTTTTGGAACTAAGTTTTGTCTTTCTTGAGGCA
1 GTTTCCCTTGAAACTAAGTTTTGTCTCTCTTGAGACA
* *
166185 GTTTCCCTTGAAAC-AAATTTTGTCTCTCTTGAGATA
1 GTTTCCCTTGAAACTAAGTTTTGTCTCTCTTGAGACA
*
166221 GTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGACA
1 GTTTCCCTTGAAACTAAGTTTTGTCTCTCTTGAGACA
*
166258 GTTTCTCTTGAAAC
1 GTTTCCCTTGAAAC
166272 ACAAGAAACC
Statistics
Matches: 105, Mismatches: 17, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
36 45 0.43
37 60 0.57
ACGTcount: A:0.22, C:0.19, G:0.16, T:0.42
Consensus pattern (37 bp):
GTTTCCCTTGAAACTAAGTTTTGTCTCTCTTGAGACA
Found at i:166204 original size:73 final size:73
Alignment explanation
Indices: 166112--166272 Score: 223
Period size: 73 Copynumber: 2.2 Consensus size: 73
166102 CTTTGAATTT
* * ** * * *
166112 GTTTTCCTTGAAACTAATTTCGTCTCTCTTGAGACAGTTTCTTTTGGAACTAAGTTTTGTCTTTC
1 GTTTCCCTTGAAACAAATTTCGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAGTTTTGTCTCTC
*
166177 TTGAGGCA
66 TTGAGACA
* *
166185 GTTTCCCTTGAAACAAATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAGTTTTGTCTCTC
1 GTTTCCCTTGAAACAAATTTCGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAGTTTTGTCTCTC
166250 TTGAGACA
66 TTGAGACA
*
166258 GTTTCTCTTGAAACA
1 GTTTCCCTTGAAACA
166273 CAAGAAACCC
Statistics
Matches: 77, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
73 77 1.00
ACGTcount: A:0.22, C:0.19, G:0.16, T:0.42
Consensus pattern (73 bp):
GTTTCCCTTGAAACAAATTTCGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAGTTTTGTCTCTC
TTGAGACA
Found at i:168044 original size:12 final size:12
Alignment explanation
Indices: 168027--168053 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
168017 TGAACCGGGT
168027 TTTAAATTTTAA
1 TTTAAATTTTAA
168039 TTTAAATTTTAA
1 TTTAAATTTTAA
168051 TTT
1 TTT
168054 TTTGTAACTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (12 bp):
TTTAAATTTTAA
Found at i:170310 original size:40 final size:40
Alignment explanation
Indices: 170262--170343 Score: 146
Period size: 40 Copynumber: 2.0 Consensus size: 40
170252 TGCAGGTTTA
*
170262 TAATACACTTTGGTGTATATGGTGGGCACGACCTTATATG
1 TAATACACTTCGGTGTATATGGTGGGCACGACCTTATATG
*
170302 TAATACACTTCGGTGTATATGGTGGGCACGACCTTATGTG
1 TAATACACTTCGGTGTATATGGTGGGCACGACCTTATATG
170342 TA
1 TA
170344 GCACTACGGT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.24, C:0.16, G:0.26, T:0.34
Consensus pattern (40 bp):
TAATACACTTCGGTGTATATGGTGGGCACGACCTTATATG
Found at i:170354 original size:38 final size:40
Alignment explanation
Indices: 170262--170356 Score: 131
Period size: 40 Copynumber: 2.4 Consensus size: 40
170252 TGCAGGTTTA
**
170262 TAATACACTTTGGTGTATATGGTGGGCACGACCTTATATG
1 TAATACACTACGGTGTATATGGTGGGCACGACCTTATATG
* *
170302 TAATACACTTCGGTGTATATGGTGGGCACGACCTTATGTG
1 TAATACACTACGGTGTATATGGTGGGCACGACCTTATATG
*
170342 T-A-GCACTACGGTGTA
1 TAATACACTACGGTGTA
170357 AATATTACTC
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
38 11 0.22
39 1 0.02
40 39 0.76
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (40 bp):
TAATACACTACGGTGTATATGGTGGGCACGACCTTATATG
Found at i:170558 original size:45 final size:43
Alignment explanation
Indices: 170442--170564 Score: 126
Period size: 43 Copynumber: 2.8 Consensus size: 43
170432 ATGGTAATGC
* *
170442 AAATAAGCTTATGAGCTTACGGAA-ATAATGGCAAGTATATAGGA
1 AAATAAGCTTA-GAGCTTATGGAATA-AATGGTAAGTATATAGGA
* * *
170486 AAA-AAGCTTTA-AGCTTATGAAATTAAATGGTAAGTATTTTGGTA
1 AAATAAGC-TTAGAGCTTATGGAA-TAAATGGTAAGTATATAGG-A
170530 AAATAAGCTTACGAGCTTATGGAATAAATGGTAAG
1 AAATAAGCTTA-GAGCTTATGGAATAAATGGTAAG
170565 AGATTTTATA
Statistics
Matches: 66, Mismatches: 6, Indels: 13
0.78 0.07 0.15
Matches are distributed among these distances:
42 9 0.14
43 18 0.27
44 14 0.21
45 15 0.23
46 10 0.15
ACGTcount: A:0.42, C:0.07, G:0.21, T:0.29
Consensus pattern (43 bp):
AAATAAGCTTAGAGCTTATGGAATAAATGGTAAGTATATAGGA
Found at i:171007 original size:49 final size:49
Alignment explanation
Indices: 170954--171053 Score: 200
Period size: 49 Copynumber: 2.0 Consensus size: 49
170944 AAATTACTGT
170954 AGCAGTTACTGTAACATGAACAATAACCACGTTTTTAAACAAAATTTTC
1 AGCAGTTACTGTAACATGAACAATAACCACGTTTTTAAACAAAATTTTC
171003 AGCAGTTACTGTAACATGAACAATAACCACGTTTTTAAACAAAATTTTC
1 AGCAGTTACTGTAACATGAACAATAACCACGTTTTTAAACAAAATTTTC
171052 AG
1 AG
171054 ATTGTTAAGG
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 51 1.00
ACGTcount: A:0.41, C:0.18, G:0.11, T:0.30
Consensus pattern (49 bp):
AGCAGTTACTGTAACATGAACAATAACCACGTTTTTAAACAAAATTTTC
Found at i:171324 original size:2 final size:2
Alignment explanation
Indices: 171317--171407 Score: 175
Period size: 2 Copynumber: 46.0 Consensus size: 2
171307 GGATATTACA
171317 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
171359 AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
171400 AT AT AT AT
1 AT AT AT AT
171408 GCATGTTCAA
Statistics
Matches: 88, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
1 1 0.01
2 87 0.99
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:174067 original size:19 final size:19
Alignment explanation
Indices: 174043--174099 Score: 114
Period size: 19 Copynumber: 3.0 Consensus size: 19
174033 TGGATTAAAG
174043 TATTTAAGAACTTTAAATT
1 TATTTAAGAACTTTAAATT
174062 TATTTAAGAACTTTAAATT
1 TATTTAAGAACTTTAAATT
174081 TATTTAAGAACTTTAAATT
1 TATTTAAGAACTTTAAATT
174100 GATGACAAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 38 1.00
ACGTcount: A:0.42, C:0.05, G:0.05, T:0.47
Consensus pattern (19 bp):
TATTTAAGAACTTTAAATT
Found at i:175532 original size:21 final size:21
Alignment explanation
Indices: 175508--175593 Score: 118
Period size: 21 Copynumber: 4.1 Consensus size: 21
175498 AAGACAATCA
175508 AGAGTCGAAGAGAAACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
* * *
175529 AGAGTCGAAAAAAAACTTAAG
1 AGAGTCGAAGAGAAACTTGAG
*
175550 AGAGTCGAAGAGAAACTTGTG
1 AGAGTCGAAGAGAAACTTGAG
* *
175571 AGAGTCGAAGATACACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
175592 AG
1 AG
175594 GCATAAGGGG
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 55 1.00
ACGTcount: A:0.44, C:0.10, G:0.29, T:0.16
Consensus pattern (21 bp):
AGAGTCGAAGAGAAACTTGAG
Found at i:175658 original size:25 final size:25
Alignment explanation
Indices: 175630--175684 Score: 83
Period size: 25 Copynumber: 2.2 Consensus size: 25
175620 TAGATGGAGT
*
175630 GGTGAAAGAAGTAGAGGTGTTGAGG
1 GGTGAAAGAAGTAGAGGTGTTAAGG
* *
175655 GGTGAAAGAGGTTGAGGTGTTAAGG
1 GGTGAAAGAAGTAGAGGTGTTAAGG
175680 GGTGA
1 GGTGA
175685 TCTTAAGATG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.29, C:0.00, G:0.49, T:0.22
Consensus pattern (25 bp):
GGTGAAAGAAGTAGAGGTGTTAAGG
Found at i:177478 original size:17 final size:17
Alignment explanation
Indices: 177448--177485 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
177438 AATTTTTATA
*
177448 AGAT-TAATTTTGTATG
1 AGATGTAATTATGTATG
*
177464 TGATGTAATTATGTATG
1 AGATGTAATTATGTATG
177481 AGATG
1 AGATG
177486 AGAAAAGTTA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
16 3 0.17
17 15 0.83
ACGTcount: A:0.32, C:0.00, G:0.24, T:0.45
Consensus pattern (17 bp):
AGATGTAATTATGTATG
Found at i:179023 original size:197 final size:201
Alignment explanation
Indices: 177743--179030 Score: 1962
Period size: 197 Copynumber: 6.6 Consensus size: 201
177733 ACATATGCAT
* *
177743 CCATAAGTATAATGTAATAGGTAAATTTACAATGTAACCGGTAT-AATATACC-AGTTTATGAGA
1 CCATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCGATTTTATGAGA
177806 GAATAGGTCTACAACATGTATCGACAC-TTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGG
66 GAATAGGTCTACAACATGTATCGACACTTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGG
* * * *
177870 ATGCCAAAAAGGGTGAACGCATAATGTGTCGATATATTTTTAAAAAGTGTCGATCCCAGAAACAT
131 ATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTCAAAAAGTGTCGATCCCAAAAACAT
177935 CGAAAC
196 CGAAAC
* *
177941 CCATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTATACATATATCGATTTTATGAGA
1 CCATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCGATTTTATGAGA
* * *
178006 GAATAGGTTTACAACATGTATCGACATTTTTTTAATTTTGTGTCGATAC-TTTGGTCCATAATGG
66 GAATAGGTCTACAACATGTATCGACACTTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGG
* *
178070 ATGCCAAAAAGGGTAAACGCATAAAGTGTCGATACA-TTTCAAAAAGTGTCGATCCC-AGAACAT
131 ATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTCAAAAAGTGTCGATCCCAAAAACAT
178133 C-AAAC
196 CGAAAC
* * * *
178138 CCAT-A-T-TAATGAAATAGGTAAATTTACAATGTAATCTGTATAAATATACTGATTTTATGAGA
1 CCATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCGATTTTATGAGA
* *
178200 GAATAGGTCTACAACATGTATCGATACTTTTTTTTAATTTTGTGTCTATACTTTTGGTCCAGAAT
66 GAATAGGTCTACAACATGTATCGACAC--TTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAAT
* * * * *
178265 GGATGCCAAAAA-GGTGAACGTATAAAGTGTCGATACATTTTCAAACAGTGTCGATTCCAGAAAT
129 GGATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTCAAAAAGTGTCGATCCCAAAAAC
178329 ATCGAAA-
194 ATCGAAAC
*
178336 CCATAA-TATAATGTAATAGGTAAA-TTATAATGTAACCGGTATAAATATACCGATTTTATGAGA
1 CCATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCGATTTTATGAGA
*
178399 GAATAGGTCTACAACATGTATCGACACTTTTTTAA-TTTGTGTCGATTC-TTTGGTCCAGAATGG
66 GAATAGGTCTACAACATGTATCGACACTTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGG
*
178462 ATGCCAAAAAGGGTGAAC-CATAAAGTGTCGATACATTTTC-AAAAGTATCGATCCCAAAAACAT
131 ATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTCAAAAAGTGTCGATCCCAAAAACAT
178525 CGAAAC
196 CGAAAC
* * *
178531 CCATAATTATAATAT-ATATGTAAA-TTATAATGTAACCGGTATAAATATACCGA--TTATGAGA
1 CCATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCGATTTTATGAGA
*
178592 GAATAGGTCTACAACATGTATCGAC-CTTTTTTAATTTTGTGTCGATTCTTTTGGTCCAGAATGG
66 GAATAGGTCTACAACATGTATCGACACTTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGG
178656 ATGCCAAAAAGGGTGAAC-CATAAAGTGTCGAT---TTTTC-AAAAGTGTCGATCCCAAAAACAT
131 ATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTCAAAAAGTGTCGATCCCAAAAACAT
178716 CGAAA-
196 CGAAAC
178721 CCATAATTATAATGTAATAGGTAAATTTACAATGT-ACCGGTATAAATATACCGATTTTATGAGA
1 CCATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCGATTTTATGAGA
*
178785 GAATAGGTCTACAACATGTATCGACACGTTTTTAA-TTTGTGTCGATACTTTTGGTCCAGAATGG
66 GAATAGGTCTACAACATGTATCGACACTTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGG
*
178849 ATGCCAAAAAGGGTGAACGTATAAA-TGTCGATACATTTTCAAAAAGTGTCGATCCCAAAAACAT
131 ATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTCAAAAAGTGTCGATCCCAAAAACAT
178913 CGAAA-
196 CGAAAC
* * *
178918 CCATAATTATAATGTAATAGGTAAATTTTCAATATAACCGATATAAATATA-CGATTTTATGAGA
1 CCATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCGATTTTATGAGA
* * *
178982 GAATGGGTCTACAACA-GTATCGACACGTTTTTAATTTTGTGTCAATACT
66 GAATAGGTCTACAACATGTATCGACACTTTTTTAATTTTGTGTCGATACT
179031 AATTTAAATA
Statistics
Matches: 1003, Mismatches: 59, Indels: 57
0.90 0.05 0.05
Matches are distributed among these distances:
190 14 0.01
191 59 0.06
192 17 0.02
193 132 0.13
194 157 0.16
195 90 0.09
196 93 0.09
197 160 0.16
198 72 0.07
199 91 0.09
200 97 0.10
201 21 0.02
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.32
Consensus pattern (201 bp):
CCATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCGATTTTATGAGA
GAATAGGTCTACAACATGTATCGACACTTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGG
ATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTCAAAAAGTGTCGATCCCAAAAACAT
CGAAAC
Found at i:180490 original size:3 final size:3
Alignment explanation
Indices: 180482--180529 Score: 78
Period size: 3 Copynumber: 16.0 Consensus size: 3
180472 TAAAGATTAC
* *
180482 GAT GAT GAT GAT GAT GTT GAT GAT GAT GAT GAT GAT AAT GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
180530 CCAAACAAGT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.33, C:0.00, G:0.31, T:0.35
Consensus pattern (3 bp):
GAT
Found at i:182008 original size:51 final size:53
Alignment explanation
Indices: 181953--182062 Score: 140
Period size: 51 Copynumber: 2.1 Consensus size: 53
181943 AAAATGAATG
*
181953 CCAAAAAGGG-TGAAC-CTACAAAGTGTCGATACATTT-TTATAGAGTGTCGAT-
1 CCAAAAAGGGTTGAACAC-ACAAAGTGTCGATACATTTCTTA-AAAGTGTCGATC
* *
182004 CC-AAAAGGGTTGCACACATAAAGTGTCGATACATTTCTTAAAAGTGTCGATC
1 CCAAAAAGGGTTGAACACACAAAGTGTCGATACATTTCTTAAAAGTGTCGATC
182056 CCAAAAA
1 CCAAAAA
182063 CATCGAAACC
Statistics
Matches: 51, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
50 7 0.14
51 34 0.67
52 6 0.12
53 4 0.08
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.25
Consensus pattern (53 bp):
CCAAAAAGGGTTGAACACACAAAGTGTCGATACATTTCTTAAAAGTGTCGATC
Found at i:182252 original size:251 final size:251
Alignment explanation
Indices: 181808--182261 Score: 707
Period size: 251 Copynumber: 1.8 Consensus size: 251
181798 TAACAACCCA
*
181808 AAAAACATCGAAACCCATAATTATAATGTAATGGGTAATTTTTCAATATAACCGGTATAAATATA
1 AAAAACATCGAAACCCATAATTATAATGTAATAGGTAATTTTTCAATATAACCGGTATAAATATA
* * * * * *
181873 CCGGTTTTATGAAAAATATGTCTACAACATTTATCGACACTTATTAGTATTGTGTCGATACTTTT
66 CCAGTTTTATGAAAAATAGGTCTACAACATGTATCGACACTTATTAATATTATGTCGATAATTTT
* * *
181938 TGTCCAAAATGAATGCCAAAAAGGGTGAACCTACAAAGTGTCGATACATTTTTATAGAGTGTCGA
131 TGTCCAAAATGAATGCCAAAAAGGGTGAACCTACAAAGTGTCGATACATTTTCAAAAAGTGTCGA
182003 T-CCAAAAGGGTTGCACACATAAAGTGTCGATACATTTCTTAAAAGTGTCGATCCC
196 TCCCAAAAGGGTTGCACACATAAAGTGTCGATACATTTCTTAAAAGTGTCGATCCC
*
182058 AAAAACATCGAAACCCATAATTATAATGTAATAGGTAATTTTGT-AATATAACCGGTATACATAT
1 AAAAACATCGAAACCCATAATTATAATGTAATAGGTAATTTT-TCAATATAACCGGTATAAATAT
* * *
182122 ACCAGTTTTATGAGAGAATAGGTCTATAATATGTATCGACACTTATTAATATTATGTCGATAATT
65 ACCAGTTTTATGA-AAAATAGGTCTACAACATGTATCGACACTTATTAATATTATGTCGATAATT
* * *
182187 TTTGTCCATAATGGATGCCAAAAAGGGTGAACGC-ATAAAGTGTCGATACATTTTCAAAAAGTGT
129 TTTGTCCAAAATGAATGCCAAAAAGGGTGAAC-CTACAAAGTGTCGATACATTTTCAAAAAGTGT
182251 CGATCCCAAAA
193 CGATCCCAAAA
182262 ACATCGAAAC
Statistics
Matches: 183, Mismatches: 17, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
250 72 0.39
251 104 0.57
252 7 0.04
ACGTcount: A:0.38, C:0.15, G:0.16, T:0.31
Consensus pattern (251 bp):
AAAAACATCGAAACCCATAATTATAATGTAATAGGTAATTTTTCAATATAACCGGTATAAATATA
CCAGTTTTATGAAAAATAGGTCTACAACATGTATCGACACTTATTAATATTATGTCGATAATTTT
TGTCCAAAATGAATGCCAAAAAGGGTGAACCTACAAAGTGTCGATACATTTTCAAAAAGTGTCGA
TCCCAAAAGGGTTGCACACATAAAGTGTCGATACATTTCTTAAAAGTGTCGATCCC
Found at i:184473 original size:205 final size:198
Alignment explanation
Indices: 183794--184489 Score: 671
Period size: 198 Copynumber: 3.5 Consensus size: 198
183784 ACCTAAATAT
* * *
183794 GTGTCGATACATTTTATACAAGTATCGA-CCC-AAA-A---AAACCAATAATTATAATGTAATAG
1 GTGTCGATACA-TTTATAAAAGTATCGATCCCAAAACATTGAAACCGATAATAATAATGTAATAG
* * * **
183853 GTAAATTAACAATGTAACTGGTATAAATATACCGG-TTAATTAGAAA-ACATCAACATAATGTAT
65 GTAAATTTACAATGTAACCGGTATAAATATACCGGTTTAATGAGAAATAGGTCAA-ATAATGTAT
* * * *
183916 CGACACTTGTGTAATTTGTGTCGATACTTATTGTCCAG--G-ATGAATGCACAAACGAGGTGCAC
129 CGACACTTGT-TAATTTGTGTCGATACTTTTTGTCCAGAAGAATGAATGC-CCAACAAGGTGCAA
183978 GCATAAA
192 GCATAAA
*
183985 GTGTCGATACATTTATTAAAAGTATCGATCCCCAAAACATTGAAACCG---ATAATAATGTATTA
1 GTGTCGATACATTTA-TAAAAGTATCGAT-CCCAAAACATTGAAACCGATAATAATAATGTAATA
* * * * * *
184047 GGTAAATTTACAATGTAACCGATATAAATATACCGATTTCATGATAAAATAGGTCAGCATAAAGT
64 GGTAAATTTACAATGTAACCGGTATAAATATACCGGTTTAATGA-GAAATAGGTCA-AATAATGT
* * *
184112 ATCGACACTTGATAAATTTGTGTCGATACTTTTGGTCCAGAAGAAT--A---CCAAAAAGGGTGC
127 ATCGACACTTG-TTAATTTGTGTCGATACTTTTTGTCCAGAAGAATGAATGCCCAACAA-GGTGC
*
184172 AACCATAAA
190 AAGCATAAA
* * * *
184181 GTGTCTATACATTTATAAAAAGTATCGATCCCAGAACATCGAAACCCATAAGT-ATAATGTAATA
1 GTGTCGATACATTTAT-AAAAGTATCGATCCCAAAACATTGAAACCGATAA-TAATAATGTAATA
** * *
184245 GGTAAATTTTTAATGTAACCGGTATAAATATATCGGTTTTATGAGAGAATAGGTCTAAATAATGT
64 GGTAAATTTACAATGTAACCGGTATAAATATACCGGTTTAATGAGA-AATAGGTC-AAATAATGT
* * * *
184310 ATCGACATGTTGTTAGTTTGTGTCGATA-TTTTTTTCCAGAATGAAATATGAATGCCCAACCAGG
127 ATCGACA-CTTGTTAATTTGTGTCGATACTTTTTGTCCAGAA-G--A-ATGAATGCCCAACAAGG
184374 TGCAAGCATAAA
187 TGCAAGCATAAA
* * ** *
184386 GTATCGATACATTTA-AAATTGTATCGATCTAAAAAACATTGTAACCGATAATAATAATGTAATA
1 GTGTCGATACATTTATAAA-AGTATCGATC-CCAAAACATTGAAACCGATAATAATAATGTAATA
* *
184450 GGTAAATTTGCAATGTTACCGGTATAAATATACCGGTTTA
64 GGTAAATTTACAATGTAACCGGTATAAATATACCGGTTTA
184490 CTTCGAAAAT
Statistics
Matches: 409, Mismatches: 59, Indels: 60
0.77 0.11 0.11
Matches are distributed among these distances:
190 4 0.01
191 22 0.05
193 3 0.01
194 3 0.01
195 65 0.16
196 43 0.11
197 15 0.04
198 135 0.33
199 7 0.02
200 2 0.00
201 4 0.01
203 4 0.01
204 10 0.02
205 87 0.21
206 5 0.01
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.31
Consensus pattern (198 bp):
GTGTCGATACATTTATAAAAGTATCGATCCCAAAACATTGAAACCGATAATAATAATGTAATAGG
TAAATTTACAATGTAACCGGTATAAATATACCGGTTTAATGAGAAATAGGTCAAATAATGTATCG
ACACTTGTTAATTTGTGTCGATACTTTTTGTCCAGAAGAATGAATGCCCAACAAGGTGCAAGCAT
AAA
Found at i:184610 original size:86 final size:85
Alignment explanation
Indices: 184506--184665 Score: 284
Period size: 86 Copynumber: 1.9 Consensus size: 85
184496 AAATAAGTCA
*
184506 ATATAAGCGCTACATATTACATTATATAAGAGCTACCTAATATGTTATTGTACTTGATAATATTT
1 ATATAAGCGCTACATATTACATTATATAAGAGCTACCTAATATGTTATTGTACTTGATAAT-TTC
184571 CGGTTAAATGCCTATTTTATT
65 CGGTTAAATGCCTATTTTATT
* *
184592 ATATAAGCGCTACCTATTACATTATATAAGCGCTACCTAATATGTTATTGTACTTGATAATTTCC
1 ATATAAGCGCTACATATTACATTATATAAGAGCTACCTAATATGTTATTGTACTTGATAATTTCC
184657 GGTTAAATG
66 GGTTAAATG
184666 ATAACATTAC
Statistics
Matches: 71, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
85 12 0.17
86 59 0.83
ACGTcount: A:0.33, C:0.14, G:0.12, T:0.40
Consensus pattern (85 bp):
ATATAAGCGCTACATATTACATTATATAAGAGCTACCTAATATGTTATTGTACTTGATAATTTCC
GGTTAAATGCCTATTTTATT
Found at i:184639 original size:23 final size:23
Alignment explanation
Indices: 184589--184633 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
184579 TGCCTATTTT
*
184589 ATTATATAAGCGCTACCTATTAC
1 ATTATATAAGCGCTACCTAATAC
184612 ATTATATAAGCGCTACCTAATA
1 ATTATATAAGCGCTACCTAATA
184634 TGTTATTGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.33
Consensus pattern (23 bp):
ATTATATAAGCGCTACCTAATAC
Found at i:186837 original size:3 final size:3
Alignment explanation
Indices: 186829--186888 Score: 111
Period size: 3 Copynumber: 20.0 Consensus size: 3
186819 TTATATTGAT
*
186829 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TCA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
186877 TTA TTA TTA TTA
1 TTA TTA TTA TTA
186889 AATATATTAA
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:188336 original size:17 final size:20
Alignment explanation
Indices: 188306--188343 Score: 55
Period size: 18 Copynumber: 2.0 Consensus size: 20
188296 TAGTCATAAA
188306 TATATATAATATAAA-TATT
1 TATATATAATATAAATTATT
188325 TATAT-TAA-ATAAATTATT
1 TATATATAATATAAATTATT
188343 T
1 T
188344 TAATATTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 5 0.28
18 8 0.44
19 5 0.28
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
TATATATAATATAAATTATT
Found at i:199667 original size:15 final size:15
Alignment explanation
Indices: 199614--199677 Score: 56
Period size: 16 Copynumber: 4.0 Consensus size: 15
199604 TGCTTGAAGA
* *
199614 AAAAAGAAAAAAAAGA
1 AAAAA-AAAAAAAGGG
*
199630 AAAAGAAAAAAAAGAAG
1 AAAA-AAAAAAAAG-GG
*
199647 AGAAAAAAAAAAGGG
1 AAAAAAAAAAAAGGG
199662 AAAAAAGAAAAAAGGG
1 AAAAAA-AAAAAAGGG
199678 GGGTCAAGGT
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
15 6 0.15
16 29 0.74
17 4 0.10
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAAAAGGG
Found at i:199677 original size:16 final size:16
Alignment explanation
Indices: 199610--199674 Score: 80
Period size: 15 Copynumber: 4.0 Consensus size: 16
199600 ATTATGCTTG
199610 AAGAAAAAAGAAAAAA
1 AAGAAAAAAGAAAAAA
199626 AAG-AAAAAGAAAAAA
1 AAGAAAAAAGAAAAAA
199641 AAGAAGAGAAA-AAAAAA
1 AAGAA-A-AAAGAAAAAA
*
199658 AGGGAAAAAAGAAAAAA
1 A-AGAAAAAAGAAAAAA
199675 GGGGGGTCAA
Statistics
Matches: 43, Mismatches: 1, Indels: 9
0.81 0.02 0.17
Matches are distributed among these distances:
15 15 0.35
16 7 0.16
17 15 0.35
18 6 0.14
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (16 bp):
AAGAAAAAAGAAAAAA
Found at i:200945 original size:83 final size:83
Alignment explanation
Indices: 200808--201238 Score: 817
Period size: 83 Copynumber: 5.2 Consensus size: 83
200798 ATTGGAATAA
200808 ATGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACC
1 ATGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACC
*
200873 AATCATTGAATTTGGAAA
66 AATCATTGAATTTGGAAG
200891 ATGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACC
1 ATGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACC
200956 AATCATTGAATTTGGAAG
66 AATCATTGAATTTGGAAG
200974 ATGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACC
1 ATGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACC
201039 AATCATTGAATTTGGAAG
66 AATCATTGAATTTGGAAG
201057 ATGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACC
1 ATGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACC
201122 AATCATTGAATTTGGAAG
66 AATCATTGAATTTGGAAG
* *
201140 ATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACC
1 ATGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACC
201205 AATCATTGAATTTGGAAG
66 AATCATTGAATTTGGAAG
* *
201223 ATGACTTTGCTCATAG
1 ATGAATGTGCTCATAG
201239 TAGAAATAAG
Statistics
Matches: 343, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
83 343 1.00
ACGTcount: A:0.26, C:0.14, G:0.23, T:0.36
Consensus pattern (83 bp):
ATGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACC
AATCATTGAATTTGGAAG
Found at i:201292 original size:105 final size:105
Alignment explanation
Indices: 201151--201407 Score: 514
Period size: 105 Copynumber: 2.4 Consensus size: 105
201141 TGAATTTGCT
201151 AATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCATTGAAT
1 AATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCATTGAAT
201216 TTGGAAGATGACTTTGCTCATAGTAGAAATAAGGAGACTC
66 TTGGAAGATGACTTTGCTCATAGTAGAAATAAGGAGACTC
201256 AATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCATTGAAT
1 AATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCATTGAAT
201321 TTGGAAGATGACTTTGCTCATAGTAGAAATAAGGAGACTC
66 TTGGAAGATGACTTTGCTCATAGTAGAAATAAGGAGACTC
201361 AATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGG
1 AATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGG
201408 TAGGAACTAC
Statistics
Matches: 152, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
105 152 1.00
ACGTcount: A:0.28, C:0.14, G:0.23, T:0.35
Consensus pattern (105 bp):
AATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCATTGAAT
TTGGAAGATGACTTTGCTCATAGTAGAAATAAGGAGACTC
Found at i:202523 original size:116 final size:113
Alignment explanation
Indices: 202132--202928 Score: 924
Period size: 113 Copynumber: 7.0 Consensus size: 113
202122 TAGCAAAGAT
* * * * *
202132 TCAAATCTATCACTTGATGGATTATCTTTTCCAGA-AAGAGTTCATAATGAAAAGAACTCATCTG
1 TCAAATCCATCATTTGATGGATCAACTTTTCCAGAGAA-AGTTCATAATGAGAAGAACTCATCTG
* * *
202196 AAGAAGGAAGAAGAAGTTCATAATGAGAAAAACTTGTTCAACCTTTTAC
65 AAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGC
* ****
202245 -CTGAATCCATCATTTGATGGATCAACTTTTCCAGTTCGAGTTCATAATGAGAAGAACTCATCTG
1 TC-AAATCCATCATTTGATGGATCAACTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTG
* * *
202309 AAGAAGGAAGAAGAAGTTCATAATAAGAAGAACTTGTTTAACCCTTTTGC
65 AAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAA-CCTTTTGC
** * **** *
202359 TTGAATTCATCATTTGATGGATCAACAGCACCA-AGGAGAGTTCATAATGAGAAGAACTCGTCAT
1 TCAAATCCATCATTTGATGGATCAACTTTTCCAGA-GAAAGTTCATAATGAGAAGAA--C-TCAT
* * * *
202423 ATGAAGAAAGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAATCTTTTGC
62 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGC
*
202475 TCAAATCCATCATTTGATGGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGA
1 TCAAATCCATCATTTGATGGATCAACTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGA
* *
202540 AGAAGGAAGAATAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGT
66 AGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGC
* * * * *
202588 TTAAATTCATCATTTGATGGATTAACATTGCCA-AGAAGAGTTCATAATGAGAAGAACTCGTCAT
1 TCAAATCCATCATTTGATGGATCAACTTTTCCAGAGAA-AGTTCATAATGAGAAGAA--C-TCAT
* * * *
202652 CTGAAGAAAGAAGAAGAAATTCATAATGAGGAGAATTTGTTCAATCTTTTGC
62 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGC
*
202704 TCAAATCCATCATTTGATGGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGA
1 TCAAATCCATCATTTGATGGATCAACTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGA
* *
202769 AGAAGGAAGAATAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGT
66 AGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGC
* * * * * * *
202817 TTAAATTCATCATTTGATGGATTAACATTGCCAG-GTAGAGTTCATAATGAGAAGAACTCGTCAT
1 TCAAATCCATCATTTGATGGATCAACTTTTCCAGAG-AAAGTTCATAATGAGAAGAACTCATC-T
** * ** *
202881 -CTGAA-GAAGAAGAAGTTCATAATAAGAAGAGCTTGTTCAACTTTTTGC
64 GAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGC
202929 ATAATTCTAT
Statistics
Matches: 584, Mismatches: 84, Indels: 33
0.83 0.12 0.05
Matches are distributed among these distances:
112 43 0.07
113 290 0.50
114 55 0.09
115 1 0.00
116 148 0.25
117 47 0.08
ACGTcount: A:0.38, C:0.14, G:0.19, T:0.30
Consensus pattern (113 bp):
TCAAATCCATCATTTGATGGATCAACTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGA
AGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGC
Found at i:202693 original size:229 final size:229
Alignment explanation
Indices: 202140--202925 Score: 1160
Period size: 229 Copynumber: 3.5 Consensus size: 229
202130 ATTCAAATCT
* * * * *
202140 ATCACTTGATGGATTATCTTTTCC-AGAAAGAGTTCATAATGAAAAGAA--C-TCATCTGAAGAA
1 ATCATTTGATGGATTAACATTGCCAAG-AAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAA
* * * * * * *
202201 GGAAGAAGAAGTTCATAATGAGAAAAACTTGTTCAACCTTTTAC-CTGAATCCATCATTTGATGG
65 AGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAATCTTTTGCTC-AAATCCATCATTTGATGG
* **** *
202265 ATCAACTTTTCCAGTTCGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCAT
129 ATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAATAAGTTCAT
* * * * *
202330 AATAAGAAGAACTTGTTTAACCCTTTTGCTTGAATTC
194 AATGAGAAGAATTTGTTCAA-CCTTTTGTTTAAATTC
* *** * *
202367 ATCATTTGATGGATCAACAGCACCAAGGAGAGTTCATAATGAGAAGAACTCGTCATATGAAGAAA
1 ATCATTTGATGGATTAACATTGCCAAGAAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAA
202432 GAAGAAGAAATTCATAATGAGAAGAATTTGTTCAATCTTTTGCTCAAATCCATCATTTGATGGAT
66 GAAGAAGAAATTCATAATGAGAAGAATTTGTTCAATCTTTTGCTCAAATCCATCATTTGATGGAT
202497 CAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAATAAGTTCATAA
131 CAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAATAAGTTCATAA
202562 TGAGAAGAATTTGTTCAACCTTTTGTTTAAATTC
196 TGAGAAGAATTTGTTCAACCTTTTGTTTAAATTC
202596 ATCATTTGATGGATTAACATTGCCAAGAAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAA
1 ATCATTTGATGGATTAACATTGCCAAGAAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAA
*
202661 GAAGAAGAAATTCATAATGAGGAGAATTTGTTCAATCTTTTGCTCAAATCCATCATTTGATGGAT
66 GAAGAAGAAATTCATAATGAGAAGAATTTGTTCAATCTTTTGCTCAAATCCATCATTTGATGGAT
202726 CAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAATAAGTTCATAA
131 CAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAATAAGTTCATAA
202791 TGAGAAGAATTTGTTCAACCTTTTGTTTAAATTC
196 TGAGAAGAATTTGTTCAACCTTTTGTTTAAATTC
* *
202825 ATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCATCTGAAG-AA
1 ATCATTTGATGGATTAACATTGCCAAGAAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAA
* **
202889 GAAGAAG---TTCATAATAAGAAGAGCTTGTTCAA-CTTTT
66 GAAGAAGAAATTCATAATGAGAAGAATTTGTTCAATCTTTT
202926 TGCATAATTC
Statistics
Matches: 513, Mismatches: 41, Indels: 13
0.90 0.07 0.02
Matches are distributed among these distances:
224 5 0.01
225 21 0.04
227 36 0.07
228 11 0.02
229 297 0.58
230 142 0.28
231 1 0.00
ACGTcount: A:0.38, C:0.14, G:0.19, T:0.30
Consensus pattern (229 bp):
ATCATTTGATGGATTAACATTGCCAAGAAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAA
GAAGAAGAAATTCATAATGAGAAGAATTTGTTCAATCTTTTGCTCAAATCCATCATTTGATGGAT
CAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAATAAGTTCATAA
TGAGAAGAATTTGTTCAACCTTTTGTTTAAATTC
Found at i:203047 original size:84 final size:82
Alignment explanation
Indices: 202893--203076 Score: 199
Period size: 84 Copynumber: 2.2 Consensus size: 82
202883 GAAGAAGAAG
* * * * * * *
202893 AAGTTCATAATAAGAAGAGCTTGTTCAACTTTTTGCATAATTCTATCACAGAAGGAGATAGATTA
1 AAGTTCATAATAAGAAGAGCTTATTCAACCTTTTGAATAACTCTATCACAGAAGGAAAAAGATCA
* *
202958 GCATCAGCCTTTCCAG-AGA
66 ACATCA---TCTCCAGTAGA
* * * * *
202977 AAGTTCATAATGAGAAGAGCTTATTTAACCTTTTGAATGACTCTATCATAGAAGGAAAAAGGTCA
1 AAGTTCATAATAAGAAGAGCTTATTCAACCTTTTGAATAACTCTATCACAGAAGGAAAAAGATCA
*
203042 ACATCATCTCCAGTGGA
66 ACATCATCTCCAGTAGA
203059 AAGTTCATAATAAGAAGA
1 AAGTTCATAATAAGAAGA
203077 ACTCATCTGA
Statistics
Matches: 83, Mismatches: 16, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
81 6 0.07
82 19 0.23
84 58 0.70
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (82 bp):
AAGTTCATAATAAGAAGAGCTTATTCAACCTTTTGAATAACTCTATCACAGAAGGAAAAAGATCA
ACATCATCTCCAGTAGA
Found at i:203250 original size:3 final size:3
Alignment explanation
Indices: 203242--203312 Score: 126
Period size: 3 Copynumber: 24.0 Consensus size: 3
203232 CCATATTGAT
203242 TTA TTA TTA TTA TTA TTA TTA TTA -TA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
203289 TTA TCA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA
203313 AATATATTAA
Statistics
Matches: 65, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
2 2 0.03
3 63 0.97
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:203829 original size:14 final size:15
Alignment explanation
Indices: 203800--203834 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
203790 TCTCAGCAGC
*
203800 AAAGAAACAGAAAAG
1 AAAGAAACAAAAAAG
203815 AAAGAAA-AAAAAAG
1 AAAGAAACAAAAAAG
203829 AAAGAA
1 AAAGAA
203835 GAGAAACTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.63
15 7 0.37
ACGTcount: A:0.80, C:0.03, G:0.17, T:0.00
Consensus pattern (15 bp):
AAAGAAACAAAAAAG
Found at i:204718 original size:14 final size:14
Alignment explanation
Indices: 204699--204736 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
204689 TTATGTAGTC
*
204699 ATAAATATATATAT
1 ATAAATAAATATAT
*
204713 ATAAATAAATATTT
1 ATAAATAAATATAT
204727 ATAAATAAAT
1 ATAAATAAAT
204737 TATTTTAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (14 bp):
ATAAATAAATATAT
Found at i:204722 original size:18 final size:18
Alignment explanation
Indices: 204699--204736 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
204689 TTATGTAGTC
*
204699 ATAAATATATATATATAA
1 ATAAATATATATAAATAA
*
204717 ATAAATATTTATAAATAA
1 ATAAATATATATAAATAA
204735 AT
1 AT
204737 TATTTTAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (18 bp):
ATAAATATATATAAATAA
Found at i:221632 original size:6 final size:6
Alignment explanation
Indices: 221623--221647 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
221613 GGGATGATAA
221623 ACGGGG ACGGGG ACGGGG ACGGGG A
1 ACGGGG ACGGGG ACGGGG ACGGGG A
221648 AAACTTATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.20, C:0.16, G:0.64, T:0.00
Consensus pattern (6 bp):
ACGGGG
Found at i:221748 original size:2 final size:2
Alignment explanation
Indices: 221741--221838 Score: 64
Period size: 2 Copynumber: 52.0 Consensus size: 2
221731 AATAATTATT
221741 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA T- TA -A TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * * * * *
221780 AA TT TA -A TT TA AA TA -A AA AA TA TA TA TT TA TA TA TT TA -A
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
221819 TT TA AA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA
221839 CCCGGCCCGA
Statistics
Matches: 73, Mismatches: 17, Indels: 12
0.72 0.17 0.12
Matches are distributed among these distances:
1 6 0.08
2 67 0.92
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:226907 original size:40 final size:40
Alignment explanation
Indices: 226852--226969 Score: 191
Period size: 40 Copynumber: 3.0 Consensus size: 40
226842 GTAGGTTTAA
*
226852 AATACACTTTGGTGTATATGGTGGGCACGACCTTATGTGT
1 AATACACTTCGGTGTATATGGTGGGCACGACCTTATGTGT
* *
226892 AATACACTTCGGTGTATATGATGGGCACAACCTTATGTGT
1 AATACACTTCGGTGTATATGGTGGGCACGACCTTATGTGT
* *
226932 AATGCACTTCGGTGTATATGGCGGGCACGACCTTATGT
1 AATACACTTCGGTGTATATGGTGGGCACGACCTTATGT
226970 CTAGCACTAT
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 71 1.00
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (40 bp):
AATACACTTCGGTGTATATGGTGGGCACGACCTTATGTGT
Found at i:231200 original size:65 final size:65
Alignment explanation
Indices: 231118--231252 Score: 261
Period size: 65 Copynumber: 2.1 Consensus size: 65
231108 ACAATACCTA
231118 TATTTCAATCTCTGACTTTACTTAAGGGAATAAATAGTGTCTCTAGATCAACTTATTGTTGATAT
1 TATTTCAATCTCTGACTTTACTTAAGGGAATAAATAGTGTCTCTAGATCAACTTATTGTTGATAT
*
231183 TATTTTAATCTCTGACTTTACTTAAGGGAATAAATAGTGTCTCTAGATCAACTTATTGTTGATAT
1 TATTTCAATCTCTGACTTTACTTAAGGGAATAAATAGTGTCTCTAGATCAACTTATTGTTGATAT
231248 TATTT
1 TATTT
231253 GATTTTAATA
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
65 69 1.00
ACGTcount: A:0.30, C:0.13, G:0.13, T:0.44
Consensus pattern (65 bp):
TATTTCAATCTCTGACTTTACTTAAGGGAATAAATAGTGTCTCTAGATCAACTTATTGTTGATAT
Found at i:233533 original size:19 final size:19
Alignment explanation
Indices: 233509--233591 Score: 113
Period size: 19 Copynumber: 4.6 Consensus size: 19
233499 AGGAGCCGTT
*
233509 TGAGCCGAGCCGCTTGAGC
1 TGAGCCGAGCCGTTTGAGC
233528 TGAGCCGAGCCGTTT--G-
1 TGAGCCGAGCCGTTTGAGC
233544 T--GCCGAGCCGTTTGAGC
1 TGAGCCGAGCCGTTTGAGC
233561 TGAGCCGAGCCGTTTGAGC
1 TGAGCCGAGCCGTTTGAGC
*
233580 TGAGCCAAGCCG
1 TGAGCCGAGCCG
233592 AGCCGCCTAG
Statistics
Matches: 57, Mismatches: 2, Indels: 10
0.83 0.03 0.14
Matches are distributed among these distances:
14 12 0.21
16 2 0.04
17 2 0.04
19 41 0.72
ACGTcount: A:0.16, C:0.29, G:0.36, T:0.19
Consensus pattern (19 bp):
TGAGCCGAGCCGTTTGAGC
Found at i:233538 original size:33 final size:33
Alignment explanation
Indices: 233501--233585 Score: 143
Period size: 33 Copynumber: 2.6 Consensus size: 33
233491 GAAGCCTGAG
233501 GAGCCGTTTGAGCCGAGCCGCTTGAGCTGAGCC
1 GAGCCGTTTGAGCCGAGCCGCTTGAGCTGAGCC
* *
233534 GAGCCGTTTGTGCCGAGCCGTTTGAGCTGAGCC
1 GAGCCGTTTGAGCCGAGCCGCTTGAGCTGAGCC
*
233567 GAGCCGTTTGAGCTGAGCC
1 GAGCCGTTTGAGCCGAGCC
233586 AAGCCGAGCC
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 48 1.00
ACGTcount: A:0.14, C:0.28, G:0.36, T:0.21
Consensus pattern (33 bp):
GAGCCGTTTGAGCCGAGCCGCTTGAGCTGAGCC
Found at i:233585 original size:14 final size:14
Alignment explanation
Indices: 233501--233567 Score: 71
Period size: 14 Copynumber: 4.4 Consensus size: 14
233491 GAAGCCTGAG
233501 GAGCCGTTTGAGCC
1 GAGCCGTTTGAGCC
233515 GAGCCGCTTGAGCTGAGCC
1 GAGCCG-TT----TGAGCC
*
233534 GAGCCGTTTGTGCC
1 GAGCCGTTTGAGCC
*
233548 GAGCCGTTTGAGCT
1 GAGCCGTTTGAGCC
233562 GAGCCG
1 GAGCCG
233568 AGCCGTTTGA
Statistics
Matches: 45, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
14 29 0.64
15 2 0.04
18 2 0.04
19 12 0.27
ACGTcount: A:0.13, C:0.28, G:0.37, T:0.21
Consensus pattern (14 bp):
GAGCCGTTTGAGCC
Found at i:234949 original size:18 final size:18
Alignment explanation
Indices: 234923--234957 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
234913 TCGAAATGAC
*
234923 TGAAGTAAATGATAAGAT
1 TGAAGTAAATAATAAGAT
*
234941 TGAATTAAATAATAAGA
1 TGAAGTAAATAATAAGA
234958 CCGGATGGAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.17, T:0.29
Consensus pattern (18 bp):
TGAAGTAAATAATAAGAT
Found at i:238739 original size:19 final size:19
Alignment explanation
Indices: 238715--238797 Score: 113
Period size: 19 Copynumber: 4.6 Consensus size: 19
238705 AGGAGCCGTT
*
238715 TGAGCCGAGCCGCTTGAGC
1 TGAGCCGAGCCGTTTGAGC
238734 TGAGCCGAGCCGTTT--G-
1 TGAGCCGAGCCGTTTGAGC
238750 T--GCCGAGCCGTTTGAGC
1 TGAGCCGAGCCGTTTGAGC
238767 TGAGCCGAGCCGTTTGAGC
1 TGAGCCGAGCCGTTTGAGC
*
238786 TGAGCCAAGCCG
1 TGAGCCGAGCCG
238798 AGCCGCCTAG
Statistics
Matches: 57, Mismatches: 2, Indels: 10
0.83 0.03 0.14
Matches are distributed among these distances:
14 12 0.21
16 2 0.04
17 2 0.04
19 41 0.72
ACGTcount: A:0.16, C:0.29, G:0.36, T:0.19
Consensus pattern (19 bp):
TGAGCCGAGCCGTTTGAGC
Found at i:238744 original size:33 final size:33
Alignment explanation
Indices: 238707--238791 Score: 143
Period size: 33 Copynumber: 2.6 Consensus size: 33
238697 GAAGCCTGAG
238707 GAGCCGTTTGAGCCGAGCCGCTTGAGCTGAGCC
1 GAGCCGTTTGAGCCGAGCCGCTTGAGCTGAGCC
* *
238740 GAGCCGTTTGTGCCGAGCCGTTTGAGCTGAGCC
1 GAGCCGTTTGAGCCGAGCCGCTTGAGCTGAGCC
*
238773 GAGCCGTTTGAGCTGAGCC
1 GAGCCGTTTGAGCCGAGCC
238792 AAGCCGAGCC
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 48 1.00
ACGTcount: A:0.14, C:0.28, G:0.36, T:0.21
Consensus pattern (33 bp):
GAGCCGTTTGAGCCGAGCCGCTTGAGCTGAGCC
Found at i:238791 original size:14 final size:14
Alignment explanation
Indices: 238707--238773 Score: 71
Period size: 14 Copynumber: 4.4 Consensus size: 14
238697 GAAGCCTGAG
238707 GAGCCGTTTGAGCC
1 GAGCCGTTTGAGCC
238721 GAGCCGCTTGAGCTGAGCC
1 GAGCCG-TT----TGAGCC
*
238740 GAGCCGTTTGTGCC
1 GAGCCGTTTGAGCC
*
238754 GAGCCGTTTGAGCT
1 GAGCCGTTTGAGCC
238768 GAGCCG
1 GAGCCG
238774 AGCCGTTTGA
Statistics
Matches: 45, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
14 29 0.64
15 2 0.04
18 2 0.04
19 12 0.27
ACGTcount: A:0.13, C:0.28, G:0.37, T:0.21
Consensus pattern (14 bp):
GAGCCGTTTGAGCC
Found at i:240155 original size:18 final size:18
Alignment explanation
Indices: 240129--240163 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
240119 TCGAAATGAC
*
240129 TGAAGTAAATGATAAGAT
1 TGAAGTAAATAATAAGAT
*
240147 TGAATTAAATAATAAGA
1 TGAAGTAAATAATAAGA
240164 CCGGATGGAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.17, T:0.29
Consensus pattern (18 bp):
TGAAGTAAATAATAAGAT
Found at i:252652 original size:3 final size:3
Alignment explanation
Indices: 252644--252673 Score: 51
Period size: 3 Copynumber: 9.7 Consensus size: 3
252634 TAAATATAAG
252644 TAT TAT TAT TAT TAT TAAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT T-AT TAT TAT TAT TA
252674 CATATTTTGC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 23 0.88
4 3 0.12
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:252679 original size:13 final size:13
Alignment explanation
Indices: 252644--252673 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
252634 TAAATATAAG
252644 TATT-ATTATTAT
1 TATTAATTATTAT
252656 TATTAATTATTAT
1 TATTAATTATTAT
252669 TATTA
1 TATTA
252674 CATATTTTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 4 0.24
13 13 0.76
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (13 bp):
TATTAATTATTAT
Found at i:258492 original size:11 final size:11
Alignment explanation
Indices: 258474--258503 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
258464 CAACACCTCG
258474 TATTGCATTCA
1 TATTGCATTCA
*
258485 TCTTGCATTCA
1 TATTGCATTCA
258496 TATTGCAT
1 TATTGCAT
258504 CTACATTGCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.23, C:0.20, G:0.10, T:0.47
Consensus pattern (11 bp):
TATTGCATTCA
Found at i:260667 original size:19 final size:19
Alignment explanation
Indices: 260643--260683 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
260633 TTTGAAGCAT
260643 AGCGAGTACAGTACTGTCG
1 AGCGAGTACAGTACTGTCG
260662 AGCGAGTACAGTACTGTCG
1 AGCGAGTACAGTACTGTCG
260681 AGC
1 AGC
260684 AACTACGCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.27, C:0.22, G:0.32, T:0.20
Consensus pattern (19 bp):
AGCGAGTACAGTACTGTCG
Found at i:262049 original size:25 final size:25
Alignment explanation
Indices: 262014--262082 Score: 70
Period size: 25 Copynumber: 2.7 Consensus size: 25
262004 ACATCATCCC
262014 TTCTATTCTTTTATT-TAT-TTATTTAT
1 TTCT-TTCTTTT-TTATATATTA-TTAT
262040 TTCTTTCTTTTTTATATATTATTAT
1 TTCTTTCTTTTTTATATATTATTAT
* *
262065 TTCATTCTATTTTGATAT
1 TTCTTTCT-TTTTTATAT
262083 GGGATAGATT
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
24 2 0.05
25 21 0.55
26 15 0.39
ACGTcount: A:0.20, C:0.09, G:0.01, T:0.70
Consensus pattern (25 bp):
TTCTTTCTTTTTTATATATTATTAT
Found at i:265638 original size:11 final size:11
Alignment explanation
Indices: 265622--265671 Score: 50
Period size: 12 Copynumber: 4.5 Consensus size: 11
265612 AGACAAAAAT
265622 GAAAAATGAAA
1 GAAAAATGAAA
*
265633 GAAAAAGGAAA
1 GAAAAATGAAA
265644 GAAAAAATG--A
1 G-AAAAATGAAA
*
265654 GAAAAAAGAAAA
1 GAAAAATG-AAA
265666 GAAAAA
1 GAAAAA
265672 AAAATAAAAG
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
9 6 0.19
10 2 0.06
11 11 0.34
12 13 0.41
ACGTcount: A:0.76, C:0.00, G:0.20, T:0.04
Consensus pattern (11 bp):
GAAAAATGAAA
Found at i:265647 original size:22 final size:21
Alignment explanation
Indices: 265601--265671 Score: 72
Period size: 22 Copynumber: 3.2 Consensus size: 21
265591 TTCGCCTGAA
*
265601 AAAAATGAAAAAGACAA-AAATG
1 AAAAATGAAAAA-A-AAGAAAAG
*
265623 AAAAATGAAAGAAAAAGGAAAG
1 AAAAATGAAA-AAAAAGAAAAG
*
265645 AAAAAATGAGAAAAAAGAAAAG
1 -AAAAATGAAAAAAAAGAAAAG
265667 AAAAA
1 AAAAA
265672 AAAATAAAAG
Statistics
Matches: 42, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
21 7 0.17
22 24 0.57
23 11 0.26
ACGTcount: A:0.76, C:0.01, G:0.17, T:0.06
Consensus pattern (21 bp):
AAAAATGAAAAAAAAGAAAAG
Found at i:265672 original size:22 final size:23
Alignment explanation
Indices: 265623--265672 Score: 75
Period size: 22 Copynumber: 2.2 Consensus size: 23
265613 GACAAAAATG
*
265623 AAAAATGAAAGAAAAAGGAAAGA
1 AAAAATGAAAGAAAAAGAAAAGA
*
265646 AAAAATGAGA-AAAAAGAAAAGA
1 AAAAATGAAAGAAAAAGAAAAGA
265668 AAAAA
1 AAAAA
265673 AAATAAAAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 16 0.64
23 9 0.36
ACGTcount: A:0.78, C:0.00, G:0.18, T:0.04
Consensus pattern (23 bp):
AAAAATGAAAGAAAAAGAAAAGA
Found at i:265680 original size:22 final size:22
Alignment explanation
Indices: 265630--265680 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
265620 ATGAAAAATG
*
265630 AAAG-AAAAAGGAAAGAAAAAA
1 AAAGAAAAAAGAAAAGAAAAAA
**
265651 TGAGAAAAAAGAAAAGAAAAAA
1 AAAGAAAAAAGAAAAGAAAAAA
*
265673 AAATAAAA
1 AAAGAAAA
265681 GGAGGGTTCA
Statistics
Matches: 23, Mismatches: 6, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
21 2 0.09
22 21 0.91
ACGTcount: A:0.80, C:0.00, G:0.16, T:0.04
Consensus pattern (22 bp):
AAAGAAAAAAGAAAAGAAAAAA
Found at i:265753 original size:24 final size:22
Alignment explanation
Indices: 265694--265757 Score: 60
Period size: 21 Copynumber: 2.9 Consensus size: 22
265684 GGGTTCAAGA
265694 TGAAAACCCGTAAAGGGCGTAT
1 TGAAAACCCGTAAAGGGCGTAT
* * *
265716 TG-AAACCAGAAAAGGTC-TCAGGT
1 TGAAAACCCGTAAAGGGCGT-A--T
265739 TGAAAACCCGTAAAGGGCG
1 TGAAAACCCGTAAAGGGCG
265758 GCTTGAGAAT
Statistics
Matches: 31, Mismatches: 6, Indels: 7
0.70 0.14 0.16
Matches are distributed among these distances:
20 1 0.03
21 13 0.42
22 2 0.06
23 3 0.10
24 12 0.39
ACGTcount: A:0.38, C:0.19, G:0.28, T:0.16
Consensus pattern (22 bp):
TGAAAACCCGTAAAGGGCGTAT
Found at i:267214 original size:113 final size:114
Alignment explanation
Indices: 266763--267311 Score: 813
Period size: 113 Copynumber: 4.9 Consensus size: 114
266753 TTCAGGTTCG
* * * * * * *
266763 ATCC-CGATTCAATTGATTCATTCCTCCTGATCTGATATTCCCTTCAGAGTAAGCGGAAAATGTC
1 ATCCTCGATTCAATGGATTAACTCCCCCAGATATGATATTCCCTTCAGAGTAAGCGGAACATGTC
*
266827 TCTCTTATCCAAGATTTGATATTCCCTTCAGAGTAAGTGGAACAAGTCT
66 TCTCTTTTCCAAGATTTGATATTCCCTTCAGAGTAAGTGGAACAAGTCT
266876 ATCCT-GATTCAATGGATTAACTCCCCCCAGATATGATATTCCCTTCAGAGTAAGCGGAACATGT
1 ATCCTCGATTCAATGGATTAACT-CCCCCAGATATGATATTCCCTTCAGAGTAAGCGGAACATGT
* *
266940 CTCTTTTTTTCTAAGATTTGATATTCCCTTCAGAGTAAGTGGAACAAGTCT
65 CTC-TCTTTTCCAAGATTTGATATTCCCTTCAGAGTAAGTGGAACAAGTCT
* *
266991 ATCCT-GATTCAATGGATCAACTCCCCCAGACATGATATTCCCTTCAGA-TAAGCGGAACATGTC
1 ATCCTCGATTCAATGGATTAACTCCCCCAGATATGATATTCCCTTCAGAGTAAGCGGAACATGTC
* *
267054 TCTTTTTTCTAAGATTTGATATTCCCTTCAGAGTAAGTGGAACAAGTCT
66 TCTCTTTTCCAAGATTTGATATTCCCTTCAGAGTAAGTGGAACAAGTCT
*
267103 -TCTTCGATTCAATGGATTAACTCCCCCAGATATGATATTCCCTTCAGAGTAAGCGGAACATGTC
1 ATCCTCGATTCAATGGATTAACTCCCCCAGATATGATATTCCCTTCAGAGTAAGCGGAACATGTC
267167 TCTCTTTTCCAAGATTTGATATTCCCTTCAGAGTAAGTGGAACAAGTCT
66 TCTCTTTTCCAAGATTTGATATTCCCTTCAGAGTAAGTGGAACAAGTCT
* * * * * * *
267216 -GCTTCGATTCAATGGATCAACTTCCCCAGATCTGATAGTCCATTCAGAGTAAGCGGAACATGTC
1 ATCCTCGATTCAATGGATTAACTCCCCCAGATATGATATTCCCTTCAGAGTAAGCGGAACATGTC
* * *
267280 TCTATTCTCAAAGATTTGATATTCCCTTCAGA
66 TCTCTTTTCCAAGATTTGATATTCCCTTCAGA
267312 TGGAATAGAT
Statistics
Matches: 405, Mismatches: 26, Indels: 10
0.92 0.06 0.02
Matches are distributed among these distances:
111 3 0.01
112 88 0.22
113 184 0.45
114 65 0.16
115 65 0.16
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.33
Consensus pattern (114 bp):
ATCCTCGATTCAATGGATTAACTCCCCCAGATATGATATTCCCTTCAGAGTAAGCGGAACATGTC
TCTCTTTTCCAAGATTTGATATTCCCTTCAGAGTAAGTGGAACAAGTCT
Found at i:267515 original size:3 final size:3
Alignment explanation
Indices: 267507--267536 Score: 51
Period size: 3 Copynumber: 9.7 Consensus size: 3
267497 TAAATATAAG
267507 TAT TAT TAT TAT TAT TACT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TA-T TAT TAT TAT TA
267537 CATATTTGCA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 23 0.88
4 3 0.12
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:267530 original size:13 final size:13
Alignment explanation
Indices: 267507--267542 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
267497 TAAATATAAG
267507 TATTA-TTATTAT
1 TATTACTTATTAT
267519 TATTACTTATTAT
1 TATTACTTATTAT
*
267532 TATTACATATT
1 TATTACTTATT
267543 TGCAGCACCC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 5 0.23
13 17 0.77
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (13 bp):
TATTACTTATTAT
Found at i:267644 original size:163 final size:165
Alignment explanation
Indices: 267427--267755 Score: 635
Period size: 163 Copynumber: 2.0 Consensus size: 165
267417 TCTCTTCGCC
267427 TTTGCCCTATTCTTGTTGACACAAAATTAGAACAAAGAGGGGCAGCTGTTAACACTCATTTTTTC
1 TTTGCCCTATTCTTGTTGACACAAAATTAGAACAAAGAGGGGCAGCTGTTAACACTCATTTTTTC
267492 CGTCCTAAATATAAGTATTATTATTATTATTACTTATTATTATTACATA-TTTGCAGCACCCTAG
66 CGTCCTAAATATAAGTATTATTATTATTATTACTTATTATTATTACATATTTTGCAGCACCCTAG
267556 GTG-AGCACTACCAATTGAGTAGACCCATGTCCTG
131 GTGAAGCACTACCAATTGAGTAGACCCATGTCCTG
267590 TTTGCCCTATTCTTGTTGACACAAAATTAGAACAAAGAGGGGCAGCTGTTAACACTCATTTTTTC
1 TTTGCCCTATTCTTGTTGACACAAAATTAGAACAAAGAGGGGCAGCTGTTAACACTCATTTTTTC
*
267655 CGTCCTAAATATAAGTATTATTATTATTATTACTTATTATTATTACATATTTTGCAGCACCCTAT
66 CGTCCTAAATATAAGTATTATTATTATTATTACTTATTATTATTACATATTTTGCAGCACCCTAG
267720 GTGAAGCACTACCAATTGAGTAGACCCATGTCCTG
131 GTGAAGCACTACCAATTGAGTAGACCCATGTCCTG
267755 T
1 T
267756 CAACATTTCA
Statistics
Matches: 163, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
163 114 0.70
164 17 0.10
165 32 0.20
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.36
Consensus pattern (165 bp):
TTTGCCCTATTCTTGTTGACACAAAATTAGAACAAAGAGGGGCAGCTGTTAACACTCATTTTTTC
CGTCCTAAATATAAGTATTATTATTATTATTACTTATTATTATTACATATTTTGCAGCACCCTAG
GTGAAGCACTACCAATTGAGTAGACCCATGTCCTG
Found at i:267678 original size:3 final size:3
Alignment explanation
Indices: 267670--267699 Score: 51
Period size: 3 Copynumber: 9.7 Consensus size: 3
267660 TAAATATAAG
267670 TAT TAT TAT TAT TAT TACT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TA-T TAT TAT TAT TA
267700 CATATTTTGC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 23 0.88
4 3 0.12
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:267693 original size:13 final size:13
Alignment explanation
Indices: 267670--267705 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
267660 TAAATATAAG
267670 TATTA-TTATTAT
1 TATTACTTATTAT
267682 TATTACTTATTAT
1 TATTACTTATTAT
*
267695 TATTACATATT
1 TATTACTTATT
267706 TTGCAGCACC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 5 0.23
13 17 0.77
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (13 bp):
TATTACTTATTAT
Found at i:270108 original size:80 final size:80
Alignment explanation
Indices: 270007--270166 Score: 320
Period size: 80 Copynumber: 2.0 Consensus size: 80
269997 CTAATCAAAG
270007 ATTGGTGGCGACTCCTCGAACCATATTTTTTCTATCGTAAAGGAATTTCCAAATTTTCGAAATGA
1 ATTGGTGGCGACTCCTCGAACCATATTTTTTCTATCGTAAAGGAATTTCCAAATTTTCGAAATGA
270072 GAGATTTTCTAAAAT
66 GAGATTTTCTAAAAT
270087 ATTGGTGGCGACTCCTCGAACCATATTTTTTCTATCGTAAAGGAATTTCCAAATTTTCGAAATGA
1 ATTGGTGGCGACTCCTCGAACCATATTTTTTCTATCGTAAAGGAATTTCCAAATTTTCGAAATGA
270152 GAGATTTTCTAAAAT
66 GAGATTTTCTAAAAT
270167 CACATTTATT
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
80 80 1.00
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.36
Consensus pattern (80 bp):
ATTGGTGGCGACTCCTCGAACCATATTTTTTCTATCGTAAAGGAATTTCCAAATTTTCGAAATGA
GAGATTTTCTAAAAT
Found at i:278185 original size:30 final size:30
Alignment explanation
Indices: 278149--278221 Score: 110
Period size: 30 Copynumber: 2.4 Consensus size: 30
278139 TCTATTAATA
*
278149 ATTTATTTTTTATTTTTTACAATTTTATAT
1 ATTTATTTTTTATTTTTTAAAATTTTATAT
* *
278179 ATTTATTCTTGATTTTTTAAAATTTTATAT
1 ATTTATTTTTTATTTTTTAAAATTTTATAT
278209 ATTTATTCTTTTA
1 ATTTATT-TTTTA
278222 AAATATATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
30 34 0.92
31 3 0.08
ACGTcount: A:0.27, C:0.04, G:0.01, T:0.67
Consensus pattern (30 bp):
ATTTATTTTTTATTTTTTAAAATTTTATAT
Found at i:278406 original size:60 final size:59
Alignment explanation
Indices: 278276--278456 Score: 177
Period size: 60 Copynumber: 3.0 Consensus size: 59
278266 CTAATTTTTG
* * * * *
278276 CCAAACTATAACTCTCATT-TGAAATTGGTCGTTAAGC-TTTAGAATATTATAATTTCATTC
1 CCAAACTATGACTCTCATTCT-AAATTAGTCCTTAAACTTTTA-AATATTCTAATTTCA-TC
*
278336 CCAAATTATGACTCTCATTCTAAATTAGTCCTTAAACTTTTAAATATTCTAATTTCATC
1 CCAAACTATGACTCTCATTCTAAATTAGTCCTTAAACTTTTAAATATTCTAATTTCATC
** * * * * * * *
278395 CCTAGGCTATGACCCTCTTTCTATATTAGTCCTAAAACTTTTGAATATTCCAATTTTATC
1 CC-AAACTATGACTCTCATTCTAAATTAGTCCTTAAACTTTTAAATATTCTAATTTCATC
278455 CC
1 CC
278457 CAAATTCATC
Statistics
Matches: 102, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
59 4 0.04
60 93 0.91
61 5 0.05
ACGTcount: A:0.31, C:0.21, G:0.07, T:0.41
Consensus pattern (59 bp):
CCAAACTATGACTCTCATTCTAAATTAGTCCTTAAACTTTTAAATATTCTAATTTCATC
Found at i:281156 original size:11 final size:11
Alignment explanation
Indices: 281140--281164 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
281130 TTATGAACCT
281140 TTTAAAGCCAC
1 TTTAAAGCCAC
281151 TTTAAAGCCAC
1 TTTAAAGCCAC
281162 TTT
1 TTT
281165 TTTTACTCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.32, C:0.24, G:0.08, T:0.36
Consensus pattern (11 bp):
TTTAAAGCCAC
Found at i:284733 original size:43 final size:41
Alignment explanation
Indices: 284686--284857 Score: 136
Period size: 41 Copynumber: 4.1 Consensus size: 41
284676 TATAGAGGCA
*
284686 TTTTTGTAAAAACGCCGCTATAAACGCATACTTTA-TAGCAGCG
1 TTTTTGTAAAAACGCCGCTATAAACACATACTTTAGT-G--GCG
* * *
284729 TTTTTGTGAAAACGCCGCTACAAACACGTACTTTAGTGGCG
1 TTTTTGTAAAAACGCCGCTATAAACACATACTTTAGTGGCG
* * * * *
284770 TTTATGTAAAAAACGCCGCTAT-AGCCCGATA-TATAGTGGTG
1 TTTTTGT-AAAAACGCCGCTATAAACAC-ATACTTTAGTGGCG
* * **
284811 TTTGTGTAACAAACGCC-ATGATAAATGCATACTTTAGTGGCG
1 TTTTTGTAA-AAACGCCGCT-ATAAACACATACTTTAGTGGCG
284853 TTTTT
1 TTTTT
284858 AACGGAATGT
Statistics
Matches: 102, Mismatches: 20, Indels: 15
0.74 0.15 0.11
Matches are distributed among these distances:
40 3 0.03
41 38 0.37
42 28 0.27
43 32 0.31
44 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.32
Consensus pattern (41 bp):
TTTTTGTAAAAACGCCGCTATAAACACATACTTTAGTGGCG
Found at i:284807 original size:41 final size:41
Alignment explanation
Indices: 284633--284827 Score: 114
Period size: 41 Copynumber: 4.7 Consensus size: 41
284623 CGATATCCTA
* * * *
284633 ATATATAGTGGCATTTAAGTAAAAAA-GTCGCGATAGC-CAG
1 ATATATAGTGGCGTTTATGTAAAAAACGCCGCTATAGCAC-G
* * * *
284673 ATATATAGAGGCATTTTTGT-AAAAACGCCGCTATA-AACG
1 ATATATAGTGGCGTTTATGTAAAAAACGCCGCTATAGCACG
** * * * *
284712 CATACTTTATAGCAGCGTTTTTGT-GAAAACGCCGCTACAAACACG
1 -ATA---TATAGTGGCGTTTATGTAAAAAACGCCGCTA-TAGCACG
* *
284757 -TACTTTAGTGGCGTTTATGTAAAAAACGCCGCTATAGCCCG
1 ATA-TATAGTGGCGTTTATGTAAAAAACGCCGCTATAGCACG
* * *
284798 ATATATAGTGGTGTTTGTGTAACAAACGCC
1 ATATATAGTGGCGTTTATGTAAAAAACGCC
284828 ATGATAAATG
Statistics
Matches: 120, Mismatches: 25, Indels: 19
0.73 0.15 0.12
Matches are distributed among these distances:
39 6 0.05
40 28 0.23
41 40 0.33
42 14 0.12
43 28 0.23
44 1 0.01
45 3 0.03
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (41 bp):
ATATATAGTGGCGTTTATGTAAAAAACGCCGCTATAGCACG
Found at i:287195 original size:11 final size:11
Alignment explanation
Indices: 287179--287211 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
287169 CATAACTACT
287179 CTAACAACCTC
1 CTAACAACCTC
287190 CTAACAGA-CTC
1 CTAACA-ACCTC
287201 CTAACAACCTC
1 CTAACAACCTC
287212 AACCGACTAC
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
10 1 0.05
11 18 0.90
12 1 0.05
ACGTcount: A:0.36, C:0.42, G:0.03, T:0.18
Consensus pattern (11 bp):
CTAACAACCTC
Found at i:289877 original size:19 final size:19
Alignment explanation
Indices: 289853--289956 Score: 208
Period size: 19 Copynumber: 5.5 Consensus size: 19
289843 TTGGACTCTT
289853 AGTGCATCGGTGCACTAAG
1 AGTGCATCGGTGCACTAAG
289872 AGTGCATCGGTGCACTAAG
1 AGTGCATCGGTGCACTAAG
289891 AGTGCATCGGTGCACTAAG
1 AGTGCATCGGTGCACTAAG
289910 AGTGCATCGGTGCACTAAG
1 AGTGCATCGGTGCACTAAG
289929 AGTGCATCGGTGCACTAAG
1 AGTGCATCGGTGCACTAAG
289948 AGTGCATCG
1 AGTGCATCG
289957 ATGAATGAAG
Statistics
Matches: 85, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 85 1.00
ACGTcount: A:0.26, C:0.21, G:0.32, T:0.21
Consensus pattern (19 bp):
AGTGCATCGGTGCACTAAG
Found at i:290020 original size:64 final size:64
Alignment explanation
Indices: 289950--290108 Score: 189
Period size: 65 Copynumber: 2.5 Consensus size: 64
289940 GCACTAAGAG
* * * ** **
289950 TGCATCGATGAATGAAGTGCATTCGATGTTTCA-AAATAGTCTGAGTGCATCGATGTATGG-T-A
1 TGCATCGATGCATAAAATGCATTCGATGTTTCATAAA-ACCCTGAGTGCATCGATACATGGATAA
*
290012 TGTTCATCGATGCATCAAATGCATTCGATGTTTTCATAAAACCCTGAGTGCATCGATACATGGAT
1 TG--CATCGATGCATAAAATGCATTCGATG-TTTCATAAAACCCTGAGTGCATCGATACATGGAT
290077 AA
63 AA
290079 TGCATCGATGCATAAAATGCATTCGATGTT
1 TGCATCGATGCATAAAATGCATTCGATGTT
290109 CAATTTATTC
Statistics
Matches: 83, Mismatches: 8, Indels: 10
0.82 0.08 0.10
Matches are distributed among these distances:
62 2 0.02
64 25 0.30
65 49 0.59
66 4 0.05
67 3 0.04
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.32
Consensus pattern (64 bp):
TGCATCGATGCATAAAATGCATTCGATGTTTCATAAAACCCTGAGTGCATCGATACATGGATAA
Found at i:290480 original size:13 final size:13
Alignment explanation
Indices: 290462--290490 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
290452 TTATTTAAAA
290462 AAAATCAATTTTG
1 AAAATCAATTTTG
290475 AAAATCAATTTTG
1 AAAATCAATTTTG
290488 AAA
1 AAA
290491 TTACTCCCCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.52, C:0.07, G:0.07, T:0.34
Consensus pattern (13 bp):
AAAATCAATTTTG
Found at i:296728 original size:65 final size:65
Alignment explanation
Indices: 296595--296754 Score: 200
Period size: 65 Copynumber: 2.5 Consensus size: 65
296585 TGCACTAAGA
* * *
296595 GTGCATCGATGCATCAAGTGCATTTGATG-TTTCAAAATAGCCAGAGTGCATCGATGCATGGCTG
1 GTGCATCGATGCATCAAATGCATTCGATGTTTTCAAAATAGCCACAGTGCATCGATGCATGGCTG
* * * *
296659 GTGCATCGATGCATCAAATGAATTCGATGTTTTCATAAA-ATCCTCAGTGCATCGGTGCATGG-T
1 GTGCATCGATGCATCAAATGCATTCGATGTTTTCA-AAATAGCCACAGTGCATCGATGCATGGCT
*
296722 AT
65 -G
*
296724 GTGCATCGATGCATGAAATGCATTCGATGTT
1 GTGCATCGATGCATCAAATGCATTCGATGTT
296755 CAATTTAATT
Statistics
Matches: 83, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
64 27 0.33
65 53 0.64
66 3 0.04
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (65 bp):
GTGCATCGATGCATCAAATGCATTCGATGTTTTCAAAATAGCCACAGTGCATCGATGCATGGCTG
Found at i:297241 original size:2 final size:2
Alignment explanation
Indices: 297234--297281 Score: 89
Period size: 2 Copynumber: 24.5 Consensus size: 2
297224 TAGCCAATTG
297234 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
297276 A- AT AT A
1 AT AT AT A
297282 GCTTAATCTG
Statistics
Matches: 45, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 44 0.98
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:302910 original size:24 final size:24
Alignment explanation
Indices: 302883--302934 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
302873 AACGGATATA
*
302883 TCAAAAATCAAAACATAAATCAGG
1 TCAAAAATCAAAACAGAAATCAGG
** * *
302907 TCAAGTATCATATCAGAAATCAGG
1 TCAAAAATCAAAACAGAAATCAGG
302931 TCAA
1 TCAA
302935 GTAACAGATC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.50, C:0.17, G:0.12, T:0.21
Consensus pattern (24 bp):
TCAAAAATCAAAACAGAAATCAGG
Found at i:302935 original size:24 final size:24
Alignment explanation
Indices: 302903--303020 Score: 159
Period size: 24 Copynumber: 4.9 Consensus size: 24
302893 AAACATAAAT
*
302903 CAGGTCAAGTATCATATCAGAAAT-
1 CAGGTCAAGTATCAGATCAG-AATC
*
302927 CAGGTCAAGTAACAGATCAGAATC
1 CAGGTCAAGTATCAGATCAGAATC
*
302951 CAAGTCAAGTATCAGATCAGAATC
1 CAGGTCAAGTATCAGATCAGAATC
*
302975 CATGTC-AGATATCAGATCAGAATC
1 CAGGTCAAG-TATCAGATCAGAATC
*
302999 CATGTCAAGTATCAGATCAGAA
1 CAGGTCAAGTATCAGATCAGAA
303021 ATCAAATCAA
Statistics
Matches: 86, Mismatches: 5, Indels: 6
0.89 0.05 0.06
Matches are distributed among these distances:
23 5 0.06
24 79 0.92
25 2 0.02
ACGTcount: A:0.41, C:0.19, G:0.18, T:0.22
Consensus pattern (24 bp):
CAGGTCAAGTATCAGATCAGAATC
Found at i:303037 original size:48 final size:48
Alignment explanation
Indices: 302906--303037 Score: 160
Period size: 48 Copynumber: 2.8 Consensus size: 48
302896 CATAAATCAG
* * *
302906 GTCAAGTATCATATCAGAAATCAGGTCAAGTAA-CAGATCAGAATCCAA
1 GTCAAGTATCAGATCAGAAATCAAGTCAA-AAATCAGATCAGAATCCAA
* * * *
302954 GTCAAGTATCAGATCAG-AATCCATGTCAGATATCAGATCAGAATCCAT
1 GTCAAGTATCAGATCAGAAAT-CAAGTCAAAAATCAGATCAGAATCCAA
*
303002 GTCAAGTATCAGATCAGAAATCAAATCAAAAATCAG
1 GTCAAGTATCAGATCAGAAATCAAGTCAAAAATCAG
303038 GTAAAATATT
Statistics
Matches: 71, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
47 4 0.06
48 64 0.90
49 3 0.04
ACGTcount: A:0.43, C:0.19, G:0.16, T:0.22
Consensus pattern (48 bp):
GTCAAGTATCAGATCAGAAATCAAGTCAAAAATCAGATCAGAATCCAA
Found at i:305452 original size:10 final size:9
Alignment explanation
Indices: 305439--305494 Score: 52
Period size: 10 Copynumber: 6.7 Consensus size: 9
305429 GTCAAAGTTT
305439 TGGTCAACAG
1 TGGTCAAC-G
305449 TGGTCAACG
1 TGGTCAACG
305458 TGGGTCAAC-
1 T-GGTCAACG
305467 -GGTCAACG
1 TGGTCAACG
305475 -GGTCAAC-
1 TGGTCAACG
305482 -GGTCAACG
1 TGGTCAACG
305490 -GGTCA
1 TGGTCA
305495 GGTCAACGGG
Statistics
Matches: 43, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
7 14 0.33
8 12 0.28
9 2 0.05
10 15 0.35
ACGTcount: A:0.25, C:0.23, G:0.34, T:0.18
Consensus pattern (9 bp):
TGGTCAACG
Found at i:305472 original size:7 final size:7
Alignment explanation
Indices: 305460--305503 Score: 56
Period size: 7 Copynumber: 6.3 Consensus size: 7
305450 GGTCAACGTG
305460 GGTCAAC
1 GGTCAAC
305467 GGTCAAC
1 GGTCAAC
305474 GGGTCAAC
1 -GGTCAAC
305482 GGTCAAC
1 GGTCAAC
305489 GGGTC-A-
1 -GGTCAAC
305495 GGTCAAC
1 GGTCAAC
305502 GG
1 GG
305504 GTCGGGTCGG
Statistics
Matches: 33, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
5 4 0.12
6 1 0.03
7 17 0.52
8 11 0.33
ACGTcount: A:0.25, C:0.25, G:0.36, T:0.14
Consensus pattern (7 bp):
GGTCAAC
Found at i:305479 original size:15 final size:15
Alignment explanation
Indices: 305459--305506 Score: 82
Period size: 15 Copynumber: 3.3 Consensus size: 15
305449 TGGTCAACGT
305459 GGGTCAACGGTCAAC
1 GGGTCAACGGTCAAC
305474 GGGTCAACGGTCAAC
1 GGGTCAACGGTCAAC
305489 GGGTC-A-GGTCAAC
1 GGGTCAACGGTCAAC
305502 GGGTC
1 GGGTC
305507 GGGTCGGGTC
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.36
14 1 0.03
15 20 0.61
ACGTcount: A:0.23, C:0.25, G:0.38, T:0.15
Consensus pattern (15 bp):
GGGTCAACGGTCAAC
Found at i:305500 original size:13 final size:13
Alignment explanation
Indices: 305467--305511 Score: 63
Period size: 13 Copynumber: 3.3 Consensus size: 13
305457 GTGGGTCAAC
305467 GGTCAACGGGTCAA
1 GGTCAACGGGTC-A
305481 CGGTCAACGGGTCA
1 -GGTCAACGGGTCA
*
305495 GGTCAACGGGTCG
1 GGTCAACGGGTCA
305508 GGTC
1 GGTC
305512 GGGTCAACTG
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
13 16 0.55
14 1 0.03
15 12 0.41
ACGTcount: A:0.20, C:0.24, G:0.40, T:0.16
Consensus pattern (13 bp):
GGTCAACGGGTCA
Found at i:305511 original size:18 final size:18
Alignment explanation
Indices: 305488--305528 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
305478 CAACGGTCAA
305488 CGGGTCAGGTCAACGGGT
1 CGGGTCAGGTCAACGGGT
* *
305506 CGGGTCGGGTCAACTGGT
1 CGGGTCAGGTCAACGGGT
305524 CGGGT
1 CGGGT
305529 AAACGGGTCG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.12, C:0.22, G:0.46, T:0.20
Consensus pattern (18 bp):
CGGGTCAGGTCAACGGGT
Found at i:305524 original size:13 final size:13
Alignment explanation
Indices: 305506--305554 Score: 80
Period size: 13 Copynumber: 3.8 Consensus size: 13
305496 GTCAACGGGT
*
305506 CGGGTCGGGTCAA
1 CGGGTCGGGTAAA
*
305519 CTGGTCGGGTAAA
1 CGGGTCGGGTAAA
305532 CGGGTCGGGTAAA
1 CGGGTCGGGTAAA
305545 CGGGTCGGGT
1 CGGGTCGGGT
305555 CGGGTTATGA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 33 1.00
ACGTcount: A:0.16, C:0.18, G:0.47, T:0.18
Consensus pattern (13 bp):
CGGGTCGGGTAAA
Found at i:305534 original size:31 final size:31
Alignment explanation
Indices: 305482--305541 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
305472 ACGGGTCAAC
*
305482 GGTCAACGGGTCAGGTCAACGGGTCGGGTCG
1 GGTCAACGGGTCAGGTAAACGGGTCGGGTCG
* *
305513 GGTCAACTGGTCGGGTAAACGGGTCGGGT
1 GGTCAACGGGTCAGGTAAACGGGTCGGGT
305542 AAACGGGTCG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.17, C:0.20, G:0.45, T:0.18
Consensus pattern (31 bp):
GGTCAACGGGTCAGGTAAACGGGTCGGGTCG
Found at i:309561 original size:64 final size:63
Alignment explanation
Indices: 309472--309661 Score: 208
Period size: 65 Copynumber: 3.0 Consensus size: 63
309462 TGCACTAAGA
*
309472 GTGCATCGATGCATCAAGTGCATTCGATGTTTCAAAATAGTCAGAGTGCATCGATGCATGGCT-G
1 GTGCATCGATGCATCAAATGCATTCGATGTTTCAAAATA-TCAGAGTGCATCGATGCATGG-TAG
* ** *
309536 GTGCATCGATGCATCAAATGAATTCGATGTTTTCATAAA-ATCCTCAGTGCATCGGTGCATGGTA
1 GTGCATCGATGCATCAAATGCATTCGATG-TTTCA-AAATAT-CAGAGTGCATCGATGCATGGTA
*
309600 T
63 G
* *
309601 GTGCATCGATGCATGAAATGCATTCGATG-TTCAAATTAATTCATG-GTGCATCGATGCATGG
1 GTGCATCGATGCATCAAATGCATTCGATGTTTCAAAAT-A-TCA-GAGTGCATCGATGCATGG
309662 ATTAGTGCAT
Statistics
Matches: 106, Mismatches: 12, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
62 2 0.02
63 4 0.04
64 46 0.43
65 51 0.48
66 3 0.03
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (63 bp):
GTGCATCGATGCATCAAATGCATTCGATGTTTCAAAATATCAGAGTGCATCGATGCATGGTAG
Found at i:310861 original size:17 final size:16
Alignment explanation
Indices: 310815--310861 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 16
310805 AAAATTCAAG
*
310815 TTTTTTGTAA-TAAAT
1 TTTTTTGTAACTATAT
310830 TTTTTTGT-ACTTATAT
1 TTTTTTGTAAC-TATAT
310846 ATTTTTTGTAACTATA
1 -TTTTTTGTAACTATA
310862 AATGTTAATA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 1 0.04
15 8 0.30
16 4 0.15
17 12 0.44
18 2 0.07
ACGTcount: A:0.28, C:0.04, G:0.06, T:0.62
Consensus pattern (16 bp):
TTTTTTGTAACTATAT
Found at i:311273 original size:276 final size:276
Alignment explanation
Indices: 310613--311398 Score: 1380
Period size: 276 Copynumber: 2.9 Consensus size: 276
310603 AGTGTTAATA
*
310613 ATTATTACAAAAAATAATGATATTCACGTTTTTGTGACAAATTATATTTGTAGTTATAAAGTTTA
1 ATTATCACAAAAAATAATGATATTCACGTTTTTGTGACAAATTATATTTGTAGTTATAAAGTTTA
* *
310678 ACTATAGTGATAACATATATTGTCATGACTATTTTTCTCCACTTTTTTGTTTCAAAAGTTGTATT
66 ACTATAGTGATAGCATATATTGTCATGACTATTTTTCTCCACTTTTTTGTTTCAAAAGTTATATT
*
310743 GATAATTTTTATAATTATAATTTATAGTTATTTTTATAGAAAAAACTATCACATCAAATAATAAA
131 GATAATTTTTATAATTATAATTTATAGTTATTTTTATAGAAAAAATTATCACATCAAATAATAAA
*
310808 ATTCAAGTTTTTTGTAATAAATT-TTTTTGTACT-TATATATTTTTTGTAACTATAAATGTTAAT
196 ATTCAAGTTTTTTGTAATAAATTATTTTTGTATTATATATATTTTTTGTAACTATAAATGTTAAT
310871 AATTATTACAAAAAAT
261 AATTATTACAAAAAAT
* *
310887 ATTGTCACAAAAAATAACGATATTCACGTTTTTGTGACAAATTATATTTGTAGTTATAAAGTTTA
1 ATTATCACAAAAAATAATGATATTCACGTTTTTGTGACAAATTATATTTGTAGTTATAAAGTTTA
* *
310952 ACTATAGTGATAGCATAAATTGTCATGACTATTTTTCTCCACTTTTTTATTTCAAAAGTTATATT
66 ACTATAGTGATAGCATATATTGTCATGACTATTTTTCTCCACTTTTTTGTTTCAAAAGTTATATT
*
311017 GATAATTTTTATAATTATAATTTATAGTTATTTTTATAGAAAAAATTATCACATCAAATGATAAA
131 GATAATTTTTATAATTATAATTTATAGTTATTTTTATAGAAAAAATTATCACATCAAATAATAAA
* *
311082 ATTCAAGTTTTTTATAATAAATTATTTTTGTATTTATATATATTTTTTGTAACTATAAGTGTTAA
196 ATTCAAGTTTTTTGTAATAAATTATTTTTGTA-TTATATATATTTTTTGTAACTATAAATGTTAA
311147 TAATTATTA-AAAAAAT
260 TAATTATTACAAAAAAT
* *
311163 ATTATCACAAAAACTAATGATATTCATGTTTTTGTGACAAATTATATTTGTAGTTATAAAGTTTA
1 ATTATCACAAAAAATAATGATATTCACGTTTTTGTGACAAATTATATTTGTAGTTATAAAGTTTA
*
311228 ACTATAGTGATAGCGTATATTGTCATGACTATTTTTCTCCACTTTTTTGTTTCAAAAGTTATATT
66 ACTATAGTGATAGCATATATTGTCATGACTATTTTTCTCCACTTTTTTGTTTCAAAAGTTATATT
*
311293 GATAATTTTTATAATTATAATTTATAGTTATTTTTATAGAAACAATTATCACATCAAATAATAAA
131 GATAATTTTTATAATTATAATTTATAGTTATTTTTATAGAAAAAATTATCACATCAAATAATAAA
*
311358 ATTCAAATTTTTTGTAATAAATTATTTTTGTACTTATATAT
196 ATTCAAGTTTTTTGTAATAAATTATTTTTGTA-TTATATAT
311399 GTTAATCATT
Statistics
Matches: 485, Mismatches: 24, Indels: 4
0.95 0.05 0.01
Matches are distributed among these distances:
274 208 0.43
275 8 0.02
276 232 0.48
277 37 0.08
ACGTcount: A:0.38, C:0.08, G:0.08, T:0.46
Consensus pattern (276 bp):
ATTATCACAAAAAATAATGATATTCACGTTTTTGTGACAAATTATATTTGTAGTTATAAAGTTTA
ACTATAGTGATAGCATATATTGTCATGACTATTTTTCTCCACTTTTTTGTTTCAAAAGTTATATT
GATAATTTTTATAATTATAATTTATAGTTATTTTTATAGAAAAAATTATCACATCAAATAATAAA
ATTCAAGTTTTTTGTAATAAATTATTTTTGTATTATATATATTTTTTGTAACTATAAATGTTAAT
AATTATTACAAAAAAT
Found at i:311586 original size:15 final size:15
Alignment explanation
Indices: 311562--311592 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
311552 AGTGTTTATA
*
311562 ATTATTACAAAAAAT
1 ATTATCACAAAAAAT
311577 ATTATCACAAAAAAT
1 ATTATCACAAAAAAT
311592 A
1 A
311593 ATGGTATTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.61, C:0.10, G:0.00, T:0.29
Consensus pattern (15 bp):
ATTATCACAAAAAAT
Found at i:314827 original size:22 final size:22
Alignment explanation
Indices: 314801--314857 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
314791 TTAATCAATT
*
314801 ATAACAAATTTATTTAGTCACA
1 ATAACAAATTTATTTAGTCAAA
* * *
314823 ATAACATATTAAATTTAGTTAAA
1 ATAACAAATT-TATTTAGTCAAA
314846 ATAA-AAATTTAT
1 ATAACAAATTTAT
314858 GTTAAATTTA
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
21 2 0.07
22 13 0.46
23 13 0.46
ACGTcount: A:0.51, C:0.07, G:0.04, T:0.39
Consensus pattern (22 bp):
ATAACAAATTTATTTAGTCAAA
Found at i:315000 original size:32 final size:32
Alignment explanation
Indices: 314877--315006 Score: 109
Period size: 32 Copynumber: 4.0 Consensus size: 32
314867 ATTTCGTCTC
*
314877 AATATTTTCTCAAAATAACAAATTTTAACAAAT
1 AATATTTT-TCAAAATAACAAATTGTAACAAAT
* * * *
314910 -TTATTTAATCAAAATAACAATTTATAACAAAT
1 AATATTT-TTCAAAATAACAAATTGTAACAAAT
* * ** * *
314942 ATTAATTTCTCATTATAAAAAAATTGTGACAAAT
1 AAT-ATTTTTCAAAAT-AACAAATTGTAACAAAT
*
314976 AATATTTTTCACAATAACAAATTGTAACAAA
1 AATATTTTTCAAAATAACAAATTGTAACAAA
315007 ATTATTTAGT
Statistics
Matches: 76, Mismatches: 17, Indels: 9
0.75 0.17 0.09
Matches are distributed among these distances:
32 41 0.54
33 16 0.21
34 19 0.25
ACGTcount: A:0.51, C:0.11, G:0.02, T:0.36
Consensus pattern (32 bp):
AATATTTTTCAAAATAACAAATTGTAACAAAT
Found at i:318307 original size:64 final size:65
Alignment explanation
Indices: 318237--318397 Score: 220
Period size: 65 Copynumber: 2.5 Consensus size: 65
318227 GTGCACTAAG
* * *
318237 AGTGCATCGATGCATGAAGTGCATTCGATGTTTT-A-AAATAGCCTGAGTGCATCAATGCATGG-
1 AGTGCATCGATGCATAAAATGCATTCGATGTTTTCATAAA-ACCCTGAGTGCATCAATGCATGGA
318299 T
65 T
* * *
318300 ATGTGCATCGATGCATCAAATGCATTCGATGTTTTCATAAAACCCTGAGTTCATCGATGCATGGA
1 A-GTGCATCGATGCATAAAATGCATTCGATGTTTTCATAAAACCCTGAGTGCATCAATGCATGGA
318365 T
65 T
*
318366 AGTGCATCAATGCATAAAATGCATTCGATGTT
1 AGTGCATCGATGCATAAAATGCATTCGATGTT
318398 CAATTTATTC
Statistics
Matches: 87, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
63 1 0.01
64 31 0.36
65 50 0.57
66 5 0.06
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31
Consensus pattern (65 bp):
AGTGCATCGATGCATAAAATGCATTCGATGTTTTCATAAAACCCTGAGTGCATCAATGCATGGAT
Found at i:320814 original size:38 final size:39
Alignment explanation
Indices: 320757--320839 Score: 141
Period size: 39 Copynumber: 2.2 Consensus size: 39
320747 GAACCCGAAA
*
320757 ATATTTTATATATAATTAATAT-AAAAATATAAAATATT
1 ATATATTATATATAATTAATATAAAAAATATAAAATATT
*
320795 ATATATTATATATAGTTAATATAAAAAATATAAAATATT
1 ATATATTATATATAATTAATATAAAAAATATAAAATATT
320834 ATATAT
1 ATATAT
320840 ATTTAATCGG
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
38 20 0.48
39 22 0.52
ACGTcount: A:0.55, C:0.00, G:0.01, T:0.43
Consensus pattern (39 bp):
ATATATTATATATAATTAATATAAAAAATATAAAATATT
Found at i:321372 original size:51 final size:51
Alignment explanation
Indices: 321302--321398 Score: 167
Period size: 51 Copynumber: 1.9 Consensus size: 51
321292 GTATATTGAA
*
321302 ACTTGCCTAATTATGTTATAAGCTATAGTATAGGTTGCCTAATTATCTTTC
1 ACTTGCCTAATTATGTTATAAGCTATAGTATACGTTGCCTAATTATCTTTC
* *
321353 ACTTTCCTATTTATGTTATAAGCTATAGTATACGTTGCCTAATTAT
1 ACTTGCCTAATTATGTTATAAGCTATAGTATACGTTGCCTAATTAT
321399 GTTATAAGCT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
51 43 1.00
ACGTcount: A:0.28, C:0.15, G:0.12, T:0.44
Consensus pattern (51 bp):
ACTTGCCTAATTATGTTATAAGCTATAGTATACGTTGCCTAATTATCTTTC
Found at i:321404 original size:32 final size:32
Alignment explanation
Indices: 321358--321430 Score: 128
Period size: 32 Copynumber: 2.3 Consensus size: 32
321348 CTTTCACTTT
*
321358 CCTATTTATGTTATAAGCTATAGTATACGTTG
1 CCTAATTATGTTATAAGCTATAGTATACGTTG
*
321390 CCTAATTATGTTATAAGCTATAGTATAGGTTG
1 CCTAATTATGTTATAAGCTATAGTATACGTTG
321422 CCTAATTAT
1 CCTAATTAT
321431 CTTTCACTTG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 39 1.00
ACGTcount: A:0.30, C:0.12, G:0.15, T:0.42
Consensus pattern (32 bp):
CCTAATTATGTTATAAGCTATAGTATACGTTG
Found at i:321407 original size:83 final size:83
Alignment explanation
Indices: 321304--321481 Score: 329
Period size: 83 Copynumber: 2.1 Consensus size: 83
321294 ATATTGAAAC
* *
321304 TTGCCTAATTATGTTATAAGCTATAGTATAGGTTGCCTAATTATCTTTCACTTTCCTATTTATGT
1 TTGCCTAATTATGTTATAAGCTATAGTATAGGTTGCCTAATTATCTTTCACTTGCCTAATTATGT
321369 TATAAGCTATAGTATACG
66 TATAAGCTATAGTATACG
321387 TTGCCTAATTATGTTATAAGCTATAGTATAGGTTGCCTAATTATCTTTCACTTGCCTAATTATGT
1 TTGCCTAATTATGTTATAAGCTATAGTATAGGTTGCCTAATTATCTTTCACTTGCCTAATTATGT
*
321452 TATAAGCTATAGTATAGG
66 TATAAGCTATAGTATACG
321470 TTGCCTAATTAT
1 TTGCCTAATTAT
321482 CTTTCGCTTG
Statistics
Matches: 92, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
83 92 1.00
ACGTcount: A:0.28, C:0.14, G:0.14, T:0.44
Consensus pattern (83 bp):
TTGCCTAATTATGTTATAAGCTATAGTATAGGTTGCCTAATTATCTTTCACTTGCCTAATTATGT
TATAAGCTATAGTATACG
Found at i:321442 original size:51 final size:51
Alignment explanation
Indices: 321387--321763 Score: 686
Period size: 51 Copynumber: 7.4 Consensus size: 51
321377 ATAGTATACG
321387 TTGCCTAATTATGTTATAAGCTATAGTATAGGTTGCCTAATTATCTTTCAC
1 TTGCCTAATTATGTTATAAGCTATAGTATAGGTTGCCTAATTATCTTTCAC
*
321438 TTGCCTAATTATGTTATAAGCTATAGTATAGGTTGCCTAATTATCTTTCGC
1 TTGCCTAATTATGTTATAAGCTATAGTATAGGTTGCCTAATTATCTTTCAC
* *
321489 TTGCCTAATT-TGTTATAAGCTATAGTATACGTTGCCTAATTGTCTTTCAC
1 TTGCCTAATTATGTTATAAGCTATAGTATAGGTTGCCTAATTATCTTTCAC
321539 TTGCCTAATTATGTTATAAGCTATAGTATAGGTTGCCTAATTATCTTTCAC
1 TTGCCTAATTATGTTATAAGCTATAGTATAGGTTGCCTAATTATCTTTCAC
*
321590 TTGCCTAATTATGTTATAAGCTATAGTATAGGTTGCCTAATTATCTTTCGC
1 TTGCCTAATTATGTTATAAGCTATAGTATAGGTTGCCTAATTATCTTTCAC
* *
321641 TTGCCTAATT-TGTTATAAGCTATAGTATACGTTGCCTAATTGTCTTTCAC
1 TTGCCTAATTATGTTATAAGCTATAGTATAGGTTGCCTAATTATCTTTCAC
321691 TTGCCTAATTATGTTATAAGCTATAGTATAGGTTGCCTAATTATCTTTCAC
1 TTGCCTAATTATGTTATAAGCTATAGTATAGGTTGCCTAATTATCTTTCAC
321742 TTGCCTAATTATGTTATAAGCT
1 TTGCCTAATTATGTTATAAGCT
321764 CATTAATTTA
Statistics
Matches: 312, Mismatches: 12, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
50 94 0.30
51 218 0.70
ACGTcount: A:0.26, C:0.16, G:0.14, T:0.44
Consensus pattern (51 bp):
TTGCCTAATTATGTTATAAGCTATAGTATAGGTTGCCTAATTATCTTTCAC
Found at i:321523 original size:101 final size:102
Alignment explanation
Indices: 321387--321763 Score: 686
Period size: 101 Copynumber: 3.7 Consensus size: 102
321377 ATAGTATACG
321387 TTGCCTAATTATGTTATAAGCTATAGTATAGGTTGCCTAATTATCTTTCACTTGCCTAATTATGT
1 TTGCCTAATTATGTTATAAGCTATAGTATAGGTTGCCTAATTATCTTTCACTTGCCTAATTATGT
*
321452 TATAAGCTATAGTATAGGTTGCCTAATTATCTTTCGC
66 TATAAGCTATAGTATAGGTTGCCTAATTATCTTTCAC
* *
321489 TTGCCTAATT-TGTTATAAGCTATAGTATACGTTGCCTAATTGTCTTTCACTTGCCTAATTATGT
1 TTGCCTAATTATGTTATAAGCTATAGTATAGGTTGCCTAATTATCTTTCACTTGCCTAATTATGT
321553 TATAAGCTATAGTATAGGTTGCCTAATTATCTTTCAC
66 TATAAGCTATAGTATAGGTTGCCTAATTATCTTTCAC
*
321590 TTGCCTAATTATGTTATAAGCTATAGTATAGGTTGCCTAATTATCTTTCGCTTGCCTAATT-TGT
1 TTGCCTAATTATGTTATAAGCTATAGTATAGGTTGCCTAATTATCTTTCACTTGCCTAATTATGT
* *
321654 TATAAGCTATAGTATACGTTGCCTAATTGTCTTTCAC
66 TATAAGCTATAGTATAGGTTGCCTAATTATCTTTCAC
321691 TTGCCTAATTATGTTATAAGCTATAGTATAGGTTGCCTAATTATCTTTCACTTGCCTAATTATGT
1 TTGCCTAATTATGTTATAAGCTATAGTATAGGTTGCCTAATTATCTTTCACTTGCCTAATTATGT
321756 TATAAGCT
66 TATAAGCT
321764 CATTAATTTA
Statistics
Matches: 264, Mismatches: 9, Indels: 4
0.95 0.03 0.01
Matches are distributed among these distances:
101 196 0.74
102 68 0.26
ACGTcount: A:0.26, C:0.16, G:0.14, T:0.44
Consensus pattern (102 bp):
TTGCCTAATTATGTTATAAGCTATAGTATAGGTTGCCTAATTATCTTTCACTTGCCTAATTATGT
TATAAGCTATAGTATAGGTTGCCTAATTATCTTTCAC
Found at i:321663 original size:152 final size:152
Alignment explanation
Indices: 321387--321763 Score: 754
Period size: 152 Copynumber: 2.5 Consensus size: 152
321377 ATAGTATACG
321387 TTGCCTAATTATGTTATAAGCTATAGTATAGGTTGCCTAATTATCTTTCACTTGCCTAATTATGT
1 TTGCCTAATTATGTTATAAGCTATAGTATAGGTTGCCTAATTATCTTTCACTTGCCTAATTATGT
321452 TATAAGCTATAGTATAGGTTGCCTAATTATCTTTCGCTTGCCTAATTTGTTATAAGCTATAGTAT
66 TATAAGCTATAGTATAGGTTGCCTAATTATCTTTCGCTTGCCTAATTTGTTATAAGCTATAGTAT
321517 ACGTTGCCTAATTGTCTTTCAC
131 ACGTTGCCTAATTGTCTTTCAC
321539 TTGCCTAATTATGTTATAAGCTATAGTATAGGTTGCCTAATTATCTTTCACTTGCCTAATTATGT
1 TTGCCTAATTATGTTATAAGCTATAGTATAGGTTGCCTAATTATCTTTCACTTGCCTAATTATGT
321604 TATAAGCTATAGTATAGGTTGCCTAATTATCTTTCGCTTGCCTAATTTGTTATAAGCTATAGTAT
66 TATAAGCTATAGTATAGGTTGCCTAATTATCTTTCGCTTGCCTAATTTGTTATAAGCTATAGTAT
321669 ACGTTGCCTAATTGTCTTTCAC
131 ACGTTGCCTAATTGTCTTTCAC
321691 TTGCCTAATTATGTTATAAGCTATAGTATAGGTTGCCTAATTATCTTTCACTTGCCTAATTATGT
1 TTGCCTAATTATGTTATAAGCTATAGTATAGGTTGCCTAATTATCTTTCACTTGCCTAATTATGT
321756 TATAAGCT
66 TATAAGCT
321764 CATTAATTTA
Statistics
Matches: 225, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
152 225 1.00
ACGTcount: A:0.26, C:0.16, G:0.14, T:0.44
Consensus pattern (152 bp):
TTGCCTAATTATGTTATAAGCTATAGTATAGGTTGCCTAATTATCTTTCACTTGCCTAATTATGT
TATAAGCTATAGTATAGGTTGCCTAATTATCTTTCGCTTGCCTAATTTGTTATAAGCTATAGTAT
ACGTTGCCTAATTGTCTTTCAC
Found at i:322701 original size:229 final size:227
Alignment explanation
Indices: 322296--322744 Score: 785
Period size: 229 Copynumber: 2.0 Consensus size: 227
322286 GTAAATTATC
* * *
322296 TATCCTTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAATATATTTATTATTATCTTTAGT
1 TATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAACATATTTATTATTATATTTAGT
**
322361 TAATATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTT
66 TAATATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAAAATTT
322426 TGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAA-AAATTT
131 TGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAATAAA-TT
322490 GAAACATAAATTACATAACTTTCAAAAAAGTATA
195 GAAACATAAATTACATAACTTT-AAAAAAGTATA
*
322524 TATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTTGAAAACATATTTATTATTATATTTGG
1 TATCATTTTTATAAAAGTGTCCATACTTATTTCACTG-TGAAAACATATTTATTATTATATTTAG
322589 TTAATATTGTTAAATTT-AAATGCTAAATAATATTTTATAAAATATCAAAACAATCAAATAAAAT
65 TTAATATTGTTAAATTTAAAAT-CTAAATAATATTTTATAAAATATCAAAACAATCAAATAAAAT
*
322653 TTTGTGTAAATTAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAATAAAT
129 TTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAATAAAT
322718 TGAAACATAAATTACATAACTTTAAAA
194 TGAAACATAAATTACATAACTTTAAAA
322745 GCAGTTTTAA
Statistics
Matches: 211, Mismatches: 7, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
228 44 0.21
229 164 0.78
230 3 0.01
ACGTcount: A:0.45, C:0.08, G:0.08, T:0.39
Consensus pattern (227 bp):
TATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAACATATTTATTATTATATTTAGT
TAATATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAAAATTT
TGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAATAAATTG
AAACATAAATTACATAACTTTAAAAAAGTATA
Found at i:322833 original size:20 final size:19
Alignment explanation
Indices: 322810--322855 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 19
322800 CGATATACCA
322810 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
322830 GGTAACAAAATGATAAAACC
1 GGTAA-AAAATGATAAAACC
322850 GGTAAA
1 GGTAAA
322856 TTTAAAAGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 1 0.04
20 21 0.84
21 3 0.12
ACGTcount: A:0.54, C:0.11, G:0.17, T:0.17
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:322998 original size:20 final size:19
Alignment explanation
Indices: 322975--323021 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
322965 CGATATAACA
*
322975 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAAAC
*
322995 GGTATCAAAATGATAAAAAC
1 GGTA-AAAAATGATAAAAAC
323015 GGTAAAA
1 GGTAAAA
323022 TGATACCGGA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 2 0.09
20 18 0.78
21 3 0.13
ACGTcount: A:0.55, C:0.09, G:0.17, T:0.19
Consensus pattern (19 bp):
GGTAAAAAATGATAAAAAC
Found at i:324289 original size:184 final size:184
Alignment explanation
Indices: 323980--324835 Score: 1622
Period size: 184 Copynumber: 4.7 Consensus size: 184
323970 CTTTCAACAT
**
323980 ATTATAATAAAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
324045 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
324110 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
131 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
* * *
324164 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGCCAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
*
324229 GGTCTACAACCTATATCGACACTTTTTAATATTATGTCGGTACTTTATGTCCATATTGGAAGAAA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
*
324294 AATGTGTCGATACAATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
131 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
324348 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
324413 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
324478 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
131 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
324532 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
324597 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
324662 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
131 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
* *
324716 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGCGAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
*
324781 GGTCTACAACCTATATCGACACTTTATAATATTGTGTCGGTACTTTATGTCCATA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATA
324836 CCATTTAAAA
Statistics
Matches: 657, Mismatches: 15, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
184 657 1.00
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34
Consensus pattern (184 bp):
ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
Found at i:340490 original size:23 final size:23
Alignment explanation
Indices: 340444--340504 Score: 97
Period size: 23 Copynumber: 2.7 Consensus size: 23
340434 AGCTCGTATC
*
340444 ATTGCACCGAAGTG-CACGTAGA
1 ATTGCACCGTAGTGCCACGTAGA
*
340466 ATTGCACCGTAGTGCCGCGTAGA
1 ATTGCACCGTAGTGCCACGTAGA
340489 ATTGCACCGTAGTGCC
1 ATTGCACCGTAGTGCC
340505 TTATAATAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
22 13 0.36
23 23 0.64
ACGTcount: A:0.25, C:0.26, G:0.28, T:0.21
Consensus pattern (23 bp):
ATTGCACCGTAGTGCCACGTAGA
Found at i:340750 original size:149 final size:149
Alignment explanation
Indices: 340480--340935 Score: 853
Period size: 147 Copynumber: 3.1 Consensus size: 149
340470 CACCGTAGTG
*
340480 CCGCGTAGAATTGCACCGTAGTGCCTTATAATAATGTCCATAAGGACCACATATCATTCCTTAAG
1 CCGCGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATATCATTCCTTAAG
*
340545 AATCATATACATATACTAGGGATCAAGTATGTGTCTTACAAGACTTCACACATGTTCCACAGAAT
66 AATCATATACATATACTAAGGATCAAGTATGTGTCTTACAAGACTTCACACATGTTCCACAGAAT
340610 ATATATATATCCCGAAGGA
131 ATATATATATCCCGAAGGA
340629 CCGCGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATATCATTCCTTAAG
1 CCGCGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATATCATTCCTTAAG
340694 AATCATATACATATACTAAGGATCAAGTATGTGTCTTACAAGACTTCACACATGTTCCACAG-A-
66 AATCATATACATATACTAAGGATCAAGTATGTGTCTTACAAGACTTCACACATGTTCCACAGAAT
340757 ATATATATATCCCGAAGGA
131 ATATATATATCCCGAAGGA
*
340776 CCGCTTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATATCATTCCTTAAG
1 CCGCGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATATCATTCCTTAAG
340841 AATCATATACATATACTAAGGATCAAGTATGTGTCTTACAAGACTTCACACATGTTCCACAGAAT
66 AATCATATACATATACTAAGGATCAAGTATGTGTCTTACAAGACTTCACACATGTTCCACAG-A-
340906 ATATATATATATCCCGAAGGA
129 ATATATATATATCCCGAAGGA
340927 CCGCGTAGA
1 CCGCGTAGA
340936 CCCTCGACTC
Statistics
Matches: 299, Mismatches: 4, Indels: 6
0.97 0.01 0.02
Matches are distributed among these distances:
147 145 0.48
148 1 0.00
149 125 0.42
150 1 0.00
151 27 0.09
ACGTcount: A:0.36, C:0.22, G:0.15, T:0.28
Consensus pattern (149 bp):
CCGCGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATATCATTCCTTAAG
AATCATATACATATACTAAGGATCAAGTATGTGTCTTACAAGACTTCACACATGTTCCACAGAAT
ATATATATATCCCGAAGGA
Found at i:344787 original size:23 final size:23
Alignment explanation
Indices: 344757--344821 Score: 107
Period size: 23 Copynumber: 2.9 Consensus size: 23
344747 CCATTAATGC
*
344757 TTAAACTCTTTAAATTTCATAGT
1 TTAAACTCTTTAAATTTCACAGT
344780 TTAAACTCTTTAAATTTCACAGT
1 TTAAACTCTTTAAATTTCACAGT
344803 TTAAACTC--TAAATTTCACA
1 TTAAACTCTTTAAATTTCACA
344822 ATTTGTTCAA
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
21 11 0.27
23 30 0.73
ACGTcount: A:0.37, C:0.17, G:0.03, T:0.43
Consensus pattern (23 bp):
TTAAACTCTTTAAATTTCACAGT
Found at i:345174 original size:43 final size:43
Alignment explanation
Indices: 345086--345204 Score: 152
Period size: 43 Copynumber: 2.8 Consensus size: 43
345076 TCGATATTAC
**
345086 TTTTTATC-TTATAATTGAGGCCCTTAA-TTTTTTAATTTTAT
1 TTTTTATCTTTATAATTGAAACCCTTAATTTTTTTAATTTTAT
* ** *
345127 TTTTTAACTTTATAATTGATTCCCTTAATTTTTTTAATTTTGT
1 TTTTTATCTTTATAATTGAAACCCTTAATTTTTTTAATTTTAT
* *
345170 TTTTTCTCTTTATAATTGAAACCCCTAATTTTTTT
1 TTTTTATCTTTATAATTGAAACCCTTAATTTTTTT
345205 CAATCCCACT
Statistics
Matches: 67, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
41 7 0.10
42 17 0.25
43 43 0.64
ACGTcount: A:0.24, C:0.12, G:0.05, T:0.60
Consensus pattern (43 bp):
TTTTTATCTTTATAATTGAAACCCTTAATTTTTTTAATTTTAT
Found at i:345373 original size:42 final size:43
Alignment explanation
Indices: 345069--345394 Score: 232
Period size: 42 Copynumber: 7.6 Consensus size: 43
345059 ATAGAACCTC
* * * * *
345069 AATTTTTTCGATATTACTTTTTATC-TTATAATTGAGGCCCTT
1 AATTTTTTCAATCTCACTTTTTACCTTTATAATTGAGACCCTT
* * * * **
345111 AATTTTTT-AATTTTATTTTTTAACTTTATAATTGATTCCCTT
1 AATTTTTTCAATCTCACTTTTTACCTTTATAATTGAGACCCTT
* *** * * *
345153 AATTTTTTTAAT-TTTGTTTTTTCTCTTTATAATTGAAACCCCT
1 AATTTTTTCAATCTCACTTTTTAC-CTTTATAATTGAGACCCTT
* ** *
345196 AATTTTTTTCAATCCCACTTTTTTACCTTTATCGTAGAGACCCTT
1 AA-TTTTTTCAATCTCAC-TTTTTACCTTTATAATTGAGACCCTT
* * * *
345241 AATTGTTTTTCAATCCCACTTTTTACATTTATAATTGAGGCCCCT
1 AA-T-TTTTTCAATCTCACTTTTTACCTTTATAATTGAGACCCTT
* * * ** * *
345286 -AGTTTTTCAATCCCACTTTTGATATTTATAA-TGAAGGCCCCT
1 AATTTTTTCAATCTCACTTTTTACCTTTATAATTG-AGACCCTT
*
345328 AA-TTTTTCAATCTCACTTTTTACCTTTATAATTGAGATCCTT
1 AATTTTTTCAATCTCACTTTTTACCTTTATAATTGAGACCCTT
*
345370 AATTTTTTTCAAACTCACTTTTTAC
1 AA-TTTTTTCAATCTCACTTTTTAC
345395 TGAGTCGAGC
Statistics
Matches: 231, Mismatches: 41, Indels: 22
0.79 0.14 0.07
Matches are distributed among these distances:
41 14 0.06
42 105 0.45
43 24 0.10
44 30 0.13
45 38 0.16
46 20 0.09
ACGTcount: A:0.25, C:0.18, G:0.06, T:0.51
Consensus pattern (43 bp):
AATTTTTTCAATCTCACTTTTTACCTTTATAATTGAGACCCTT
Found at i:357046 original size:29 final size:29
Alignment explanation
Indices: 357014--357071 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
357004 CAATATAAAT
357014 ATTGAAAATTCGTAATATTTACAAAATCA
1 ATTGAAAATTCGTAATATTTACAAAATCA
357043 ATTGAAAATTCGTAATATTTACAAAATCA
1 ATTGAAAATTCGTAATATTTACAAAATCA
357072 CGTATTAATC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.48, C:0.10, G:0.07, T:0.34
Consensus pattern (29 bp):
ATTGAAAATTCGTAATATTTACAAAATCA
Found at i:363701 original size:30 final size:31
Alignment explanation
Indices: 363658--363724 Score: 82
Period size: 31 Copynumber: 2.2 Consensus size: 31
363648 ACAAGCCTTA
* * * *
363658 GAAAAATTTGGGGACC-ATTCTATAATTTTT
1 GAAAAATTGGGGGACCAATTCGACAATTTTG
*
363688 GAAAAGTTGGGGGACCAATTCGACAATTTTG
1 GAAAAATTGGGGGACCAATTCGACAATTTTG
363719 GAAAAA
1 GAAAAA
363725 AAATTAATGG
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
30 14 0.47
31 16 0.53
ACGTcount: A:0.37, C:0.10, G:0.22, T:0.30
Consensus pattern (31 bp):
GAAAAATTGGGGGACCAATTCGACAATTTTG
Found at i:368812 original size:180 final size:180
Alignment explanation
Indices: 368510--368871 Score: 724
Period size: 180 Copynumber: 2.0 Consensus size: 180
368500 TTGATAAACC
368510 AAATTTCATTCACATAACCTGGGAAAAAATATTTAGTATCCCAGCATACCTATAAATCAGTATTT
1 AAATTTCATTCACATAACCTGGGAAAAAATATTTAGTATCCCAGCATACCTATAAATCAGTATTT
368575 TTCCAAAGTATCCATTTATTTGGTCAATGTATGTTGAATGAGAATGTAAGATACATGAGTTGCAC
66 TTCCAAAGTATCCATTTATTTGGTCAATGTATGTTGAATGAGAATGTAAGATACATGAGTTGCAC
368640 CTAAGTGCTAAAAGAAAGCCTAGGTTCTGTGGTGACAACAACATTATACA
131 CTAAGTGCTAAAAGAAAGCCTAGGTTCTGTGGTGACAACAACATTATACA
368690 AAATTTCATTCACATAACCTGGGAAAAAATATTTAGTATCCCAGCATACCTATAAATCAGTATTT
1 AAATTTCATTCACATAACCTGGGAAAAAATATTTAGTATCCCAGCATACCTATAAATCAGTATTT
368755 TTCCAAAGTATCCATTTATTTGGTCAATGTATGTTGAATGAGAATGTAAGATACATGAGTTGCAC
66 TTCCAAAGTATCCATTTATTTGGTCAATGTATGTTGAATGAGAATGTAAGATACATGAGTTGCAC
368820 CTAAGTGCTAAAAGAAAGCCTAGGTTCTGTGGTGACAACAACATTATACA
131 CTAAGTGCTAAAAGAAAGCCTAGGTTCTGTGGTGACAACAACATTATACA
368870 AA
1 AA
368872 GGTAACGAAA
Statistics
Matches: 182, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
180 182 1.00
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.31
Consensus pattern (180 bp):
AAATTTCATTCACATAACCTGGGAAAAAATATTTAGTATCCCAGCATACCTATAAATCAGTATTT
TTCCAAAGTATCCATTTATTTGGTCAATGTATGTTGAATGAGAATGTAAGATACATGAGTTGCAC
CTAAGTGCTAAAAGAAAGCCTAGGTTCTGTGGTGACAACAACATTATACA
Found at i:375141 original size:3 final size:3
Alignment explanation
Indices: 375133--375392 Score: 146
Period size: 3 Copynumber: 86.3 Consensus size: 3
375123 ATATTTTGTA
*
375133 AAT AAT AAT -AT AAT -AT AAT AAT AAT AAT AGT AAT AAT AAT AAT -AT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * *
375178 TAT AAA AAT AATT AGT AAT AAT AATT AAT AA- AAT AAG AGT AA- AAT
1 AAT AAT AAT AA-T AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT
* * * *
375223 AA- AAT AAC ATT AAAT AAT AAT AAT AAT AAT AAC AAT -AT AAT AAC
1 AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * *
375267 AA- AAT AAT AAAT GAT AATT GA- AAT AAT AAT AGAGT AAT AGT AA- ATT
1 AAT AAT AAT -AAT AAT AA-T AAT AAT AAT AAT A-A-T AAT AAT AAT AAT
* * * *
375313 AAT AAT AAT AACA AAT AAT AA- ATT AAAT AAT AGT AAT ATAT ACT AAT
1 AAT AAT AAT AA-T AAT AAT AAT AAT -AAT AAT AAT AAT A-AT AAT AAT
* * *
375360 ATAT AAT AAT AGT AAT ATAT ATT AAA AAT AAT A
1 A-AT AAT AAT AAT AAT A-AT AAT AAT AAT AAT A
375393 GTCTATGGCA
Statistics
Matches: 194, Mismatches: 40, Indels: 46
0.69 0.14 0.16
Matches are distributed among these distances:
2 19 0.10
3 146 0.75
4 27 0.14
5 2 0.01
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:375276 original size:47 final size:46
Alignment explanation
Indices: 375142--375368 Score: 124
Period size: 47 Copynumber: 4.6 Consensus size: 46
375132 AAATAATAAT
* * * * *
375142 ATAAT-ATAATAATAATAATAGTAATAATAATAATATTATAAAAATAA
1 ATAATAATAATAATAATAA-AAT-ATAATAACAAAATAATAAAATTAA
* * *
375189 TTAGTAATAATAATTAATAAAATA-AGAGTAA-AATAA-AATAACATTAA
1 ATAATAATAATAA-TAATAAAATATA-A-TAACAA-AATAATAAAATTAA
375236 ATAATAATAATAATAATAACAATATAATAACAAAATAATAAATGATAATTGAA
1 ATAATAATAATAATAATAA-AATATAATAACAAAATAAT--A--A-AATT-AA
*
375289 ATAATAATAGAGTAATAGTAAATTAATAATAATAAC-AAATAAT-AAATTAA
1 ATAATAATA-A-TAATAAT-AA--AAT-ATAATAACAAAATAATAAAATTAA
* * *
375339 ATAATAGTAATATATACTAATATATAATAA
1 ATAATAATAATA-ATAATAAAATATAATAA
375369 TAGTAATATA
Statistics
Matches: 144, Mismatches: 15, Indels: 44
0.71 0.07 0.22
Matches are distributed among these distances:
45 7 0.05
46 14 0.10
47 36 0.25
48 18 0.12
49 12 0.08
50 10 0.07
51 5 0.03
52 4 0.03
53 11 0.08
54 1 0.01
55 6 0.04
56 2 0.01
57 10 0.07
58 8 0.06
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.31
Consensus pattern (46 bp):
ATAATAATAATAATAATAAAATATAATAACAAAATAATAAAATTAA
Found at i:375391 original size:16 final size:16
Alignment explanation
Indices: 375132--375392 Score: 60
Period size: 16 Copynumber: 15.5 Consensus size: 16
375122 CATATTTTGT
375132 AAATAATAATATAATATA
1 AAATAAT-ATATAATA-A
375150 ATAATAATAATAGTAATAA
1 A-AATAAT-ATA-TAATAA
*
375169 TAATAATAT-T-ATAA
1 AAATAATATATAATAA
375183 AAATAAT-TAGTAATAA
1 AAATAATATA-TAATAA
* * *
375199 TAATTAATAAAATAAGAGTA
1 -AAATAAT-ATATAATA--A
*
375219 AAATAAAATA-ACATTAA
1 AAATAATATATA-A-TAA
375236 ATAATAATA-ATAATAA
1 A-AATAATATATAATAA
* * *
375252 TAACAATATAATAA-CA
1 AAATAATAT-ATAATAA
375268 AAATAATAAATGATAATTGAA
1 AAATAAT--AT-ATAA-T-AA
*
375289 ATAATAATAGAGTAATAGTA
1 A-AATAATATA-TAATA--A
*
375309 AATTAATA-ATAATAA
1 AAATAATATATAATAA
*
375324 CAAAT-A-ATA-AAT-T
1 -AAATAATATATAATAA
*
375337 AAATAATA-GTAATATA
1 AAATAATATATAATA-A
* *
375353 TACTAATATATAATAA
1 AAATAATATATAATAA
* * *
375369 TAGTAATATATATTAA
1 AAATAATATATAATAA
375385 AAATAATA
1 AAATAATA
375393 GTCTATGGCA
Statistics
Matches: 180, Mismatches: 30, Indels: 68
0.65 0.11 0.24
Matches are distributed among these distances:
12 4 0.02
13 2 0.01
14 18 0.10
15 11 0.06
16 43 0.24
17 27 0.15
18 29 0.16
19 26 0.14
20 12 0.07
21 2 0.01
22 6 0.03
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.32
Consensus pattern (16 bp):
AAATAATATATAATAA
Found at i:376228 original size:118 final size:118
Alignment explanation
Indices: 375822--376399 Score: 747
Period size: 118 Copynumber: 4.9 Consensus size: 118
375812 AAATTTACTT
* * * *
375822 TGATGGATTTGAGTAAAAGTTCGAACAAATTCTTCTCATTATGAACTCCTTCCCCCTCTTCCGAT
1 TGATGGATTTGAGTAAAAGGTCGAACAAATTCTTCTCATTATGAACTTCTTCTCCCTCTTCGGAT
* * * * * *
375887 GAGTCCTTTTCCTTATGAACTTTCCATTGAAAATGACGTTCCACCTTC-TTCTG
66 GAGTTCTTCTCATTATGAACTCTCCATTGAAAATGATGATCCACC-TCATTCTG
* * * * * * *
375940 TGATGGATTTAAGTAAAATGTCGAACAAATTCTTCTCATTATGAATTTTTTC-CCCTCATCGAAC
1 TGATGGATTTGAGTAAAAGGTCGAACAAATTCTTCTCATTATGAACTTCTTCTCCCTCTTCGGAT
* * *
376004 GAG-TCATTCTCATTATGAACTCTCCATTTAAAATG-TCGATCTACCTCCTTCAT-
66 GAGTTC-TTCTCATTATGAACTCTCCATTGAAAATGAT-GATCCACCTCATTC-TG
** * * *
376057 TGATGGATTTCTGTAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTCACTCTTCGGAT
1 TGATGGATTTGAGTAAAAGGTCGAACAAATTCTTCTCATTATGAACTTCTTCTCCCTCTTCGGAT
376122 GAGTTCTTCTCATTATGAACTCTCCATTGAAAATGATGATCCACCTCATTCTG
66 GAGTTCTTCTCATTATGAACTCTCCATTGAAAATGATGATCCACCTCATTCTG
* *
376175 TGAT-GATTTGAGTAAAAGGTCGAACAAGTTCTTCTTATTATGAACTTCTTTCTCCCTCTTCGGA
1 TGATGGATTTGAGTAAAAGGTCGAACAAATTCTTCTCATTATGAACTTC-TTCTCCCTCTTCGGA
* *
376239 TGAGTTCTCCTCATTATGAACTCTCCAATGAAAATGATGATCCA-CTCATTCTG
65 TGAGTTCTTCTCATTATGAACTCTCCATTGAAAATGATGATCCACCTCATTCTG
*
376292 TGATGGATTTGAGTAAAAGGTCGAACAAATTCTTCTCATTATGAACTTCTTCTCCCTCTTCAGAT
1 TGATGGATTTGAGTAAAAGGTCGAACAAATTCTTCTCATTATGAACTTCTTCTCCCTCTTCGGAT
* * ** *
376357 GAATTTTTCTCATTACAAACTCTCCATTGAAAATGACGATCCA
66 GAGTTCTTCTCATTATGAACTCTCCATTGAAAATGATGATCCA
376400 TGTAAAATCC
Statistics
Matches: 401, Mismatches: 49, Indels: 21
0.85 0.10 0.04
Matches are distributed among these distances:
116 3 0.01
117 195 0.49
118 200 0.50
119 3 0.01
ACGTcount: A:0.27, C:0.22, G:0.13, T:0.37
Consensus pattern (118 bp):
TGATGGATTTGAGTAAAAGGTCGAACAAATTCTTCTCATTATGAACTTCTTCTCCCTCTTCGGAT
GAGTTCTTCTCATTATGAACTCTCCATTGAAAATGATGATCCACCTCATTCTG
Done.