Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001547.1 Hibiscus syriacus cultivar Beakdansim tig00003041_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10425128
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 31 of 51
Found at i:6168055 original size:11 final size:11
Alignment explanation
Indices: 6168039--6168076 Score: 76
Period size: 11 Copynumber: 3.5 Consensus size: 11
6168029 CTTAAAATGT
6168039 AACAATTATGC
1 AACAATTATGC
6168050 AACAATTATGC
1 AACAATTATGC
6168061 AACAATTATGC
1 AACAATTATGC
6168072 AACAA
1 AACAA
6168077 AAGCATCAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.50, C:0.18, G:0.08, T:0.24
Consensus pattern (11 bp):
AACAATTATGC
Found at i:6172674 original size:17 final size:14
Alignment explanation
Indices: 6172635--6172680 Score: 56
Period size: 14 Copynumber: 3.1 Consensus size: 14
6172625 TTTTTTATTG
6172635 AAAAACCGAACCGA
1 AAAAACCGAACCGA
*
6172649 AAAACCCGAACCGTTAA
1 AAAAACCGAACCG---A
6172666 AAAAACCGAACCGA
1 AAAAACCGAACCGA
6172680 A
1 A
6172681 CCAAAAAAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
14 14 0.52
17 13 0.48
ACGTcount: A:0.54, C:0.28, G:0.13, T:0.04
Consensus pattern (14 bp):
AAAAACCGAACCGA
Found at i:6172686 original size:17 final size:18
Alignment explanation
Indices: 6172638--6172687 Score: 52
Period size: 17 Copynumber: 2.8 Consensus size: 18
6172628 TTTATTGAAA
6172638 AACCGAACCGAAAAACCCG
1 AACCGAACC-AAAAACCCG
6172657 AACCGTTAA--AAAAA-CCG
1 AACCG--AACCAAAAACCCG
6172674 AACCGAACCAAAAA
1 AACCGAACCAAAAA
6172688 AACCGATTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 10
0.73 0.00 0.27
Matches are distributed among these distances:
15 2 0.07
17 13 0.48
18 5 0.19
19 5 0.19
21 2 0.07
ACGTcount: A:0.54, C:0.30, G:0.12, T:0.04
Consensus pattern (18 bp):
AACCGAACCAAAAACCCG
Found at i:6172686 original size:19 final size:19
Alignment explanation
Indices: 6172638--6172693 Score: 62
Period size: 19 Copynumber: 3.1 Consensus size: 19
6172628 TTTATTGAAA
* *
6172638 AACCGAACCGAAAAACCCG
1 AACCGAACCAAAAAAACCG
**
6172657 AACCG--TTAAAAAAACCG
1 AACCGAACCAAAAAAACCG
6172674 AACCGAACCAAAAAAACCG
1 AACCGAACCAAAAAAACCG
6172693 A
1 A
6172694 TTTCGATTTT
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
17 13 0.45
19 16 0.55
ACGTcount: A:0.54, C:0.30, G:0.12, T:0.04
Consensus pattern (19 bp):
AACCGAACCAAAAAAACCG
Found at i:6174750 original size:2 final size:2
Alignment explanation
Indices: 6174745--6174772 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
6174735 GTCATTATGA
6174745 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6174773 TTTTTGGAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6175438 original size:37 final size:37
Alignment explanation
Indices: 6175378--6175485 Score: 189
Period size: 37 Copynumber: 2.9 Consensus size: 37
6175368 AACATAACGT
*
6175378 TAGAGTTTTACTAAGATTCAAACTCCTAAAAATATGA
1 TAGAGTTTTACTATGATTCAAACTCCTAAAAATATGA
*
6175415 TAGAGTTTTACTATGATTTAAACTCCTAAAAATATGA
1 TAGAGTTTTACTATGATTCAAACTCCTAAAAATATGA
*
6175452 TAGAGTTTTACTATGATTCAAACTTCTAAAAATA
1 TAGAGTTTTACTATGATTCAAACTCCTAAAAATA
6175486 GGATCTATAA
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.42, C:0.12, G:0.10, T:0.36
Consensus pattern (37 bp):
TAGAGTTTTACTATGATTCAAACTCCTAAAAATATGA
Found at i:6175899 original size:19 final size:19
Alignment explanation
Indices: 6175877--6175929 Score: 54
Period size: 19 Copynumber: 2.8 Consensus size: 19
6175867 ATTATTATTG
**
6175877 TTATTATATTTTTTATTTT
1 TTATTATATTTTTTATAAT
* *
6175896 TTATTTTGTTTTTT-TAAT
1 TTATTATATTTTTTATAAT
6175914 TTATTATTATTTTTTA
1 TTATTA-TATTTTTTA
6175930 AAACATTTTA
Statistics
Matches: 26, Mismatches: 6, Indels: 3
0.74 0.17 0.09
Matches are distributed among these distances:
18 7 0.27
19 19 0.73
ACGTcount: A:0.21, C:0.00, G:0.02, T:0.77
Consensus pattern (19 bp):
TTATTATATTTTTTATAAT
Found at i:6176117 original size:21 final size:20
Alignment explanation
Indices: 6176072--6176125 Score: 58
Period size: 21 Copynumber: 2.8 Consensus size: 20
6176062 ATTTATTTTT
6176072 TTTTATTT-TT-TTCAAATA
1 TTTTATTTATTATTCAAATA
* *
6176090 TTATATTTATTATTACATATA
1 TTTTATTTATTATT-CAAATA
*
6176111 TTTTATTTAATATTC
1 TTTTATTTATTATTC
6176126 TTATACCCTT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
18 7 0.24
19 2 0.07
20 3 0.10
21 17 0.59
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.63
Consensus pattern (20 bp):
TTTTATTTATTATTCAAATA
Found at i:6178955 original size:3 final size:3
Alignment explanation
Indices: 6178947--6179053 Score: 115
Period size: 3 Copynumber: 35.0 Consensus size: 3
6178937 ATTAATTTAT
* *
6178947 TTA TTA TTA TTA TAA ATA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * *
6178995 TTAA ATA TTA TTA TTA TAA TTA TAA TTA CTA ATA TTA TTA TTTA TTA
1 TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA
* *
6179042 CTA ATA TTA TTA
1 TTA TTA TTA TTA
6179054 ATAAAAAATT
Statistics
Matches: 86, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
3 81 0.94
4 5 0.06
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (3 bp):
TTA
Found at i:6192146 original size:21 final size:21
Alignment explanation
Indices: 6192120--6192159 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
6192110 CAGAACCCTA
*
6192120 GGGGGGTATCGATTCCCCTGT
1 GGGGGGAATCGATTCCCCTGT
*
6192141 GGGGGGAATCGGTTCCCCT
1 GGGGGGAATCGATTCCCCT
6192160 TCAAAGGGGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.10, C:0.25, G:0.40, T:0.25
Consensus pattern (21 bp):
GGGGGGAATCGATTCCCCTGT
Found at i:6192194 original size:20 final size:20
Alignment explanation
Indices: 6192115--6192202 Score: 63
Period size: 20 Copynumber: 4.2 Consensus size: 20
6192105 TTTAACAGAA
*
6192115 CCCT-AGGGGGGTATCGATT
1 CCCTCAGGGGGGGATCGATT
* *
6192134 CCC-CTGTGGGGGGAATCGGTT
1 CCCTCAG-GGGGGG-ATCGATT
* * *
6192155 CCCCTTCAAAGGGGGAATCGGTT
1 -CCC-TC-AGGGGGGGATCGATT
6192178 CCCTCAGGGGGGGATCGATT
1 CCCTCAGGGGGGGATCGATT
6192198 CCCTC
1 CCCTC
6192203 TGCACCAAAA
Statistics
Matches: 53, Mismatches: 9, Indels: 13
0.71 0.12 0.17
Matches are distributed among these distances:
19 4 0.08
20 22 0.42
21 8 0.15
22 6 0.11
23 7 0.13
24 6 0.11
ACGTcount: A:0.15, C:0.27, G:0.35, T:0.23
Consensus pattern (20 bp):
CCCTCAGGGGGGGATCGATT
Found at i:6196053 original size:22 final size:21
Alignment explanation
Indices: 6196011--6196050 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
6196001 GAGTTTGTTT
*
6196011 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTAAAACA
6196032 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
6196051 ACAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:6201482 original size:1 final size:1
Alignment explanation
Indices: 6201478--6201533 Score: 58
Period size: 1 Copynumber: 56.0 Consensus size: 1
6201468 GAAAAAAGTG
* * * * * *
6201478 AAAAAAAGAGAAAAAAAAGAAAAAAAAAAAAAAAAGAAGAAAAAAAAGAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
6201534 GGGGGGGTCA
Statistics
Matches: 43, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
1 43 1.00
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (1 bp):
A
Found at i:6201484 original size:10 final size:10
Alignment explanation
Indices: 6201464--6201532 Score: 83
Period size: 9 Copynumber: 7.2 Consensus size: 10
6201454 ATTATGCTTG
6201464 AAGAG-AAAA
1 AAGAGAAAAA
*
6201473 AAGTGAAAAA
1 AAGAGAAAAA
6201483 AAGAGAAAAA
1 AAGAGAAAAA
6201493 AA-AGAAAAA
1 AAGAGAAAAA
*
6201502 AA-AAAAAAA
1 AAGAGAAAAA
6201511 AAGAAGAAAAA
1 AAG-AGAAAAA
6201522 AA-AGAAAAA
1 AAGAGAAAAA
6201531 AA
1 AA
6201533 AGGGGGGGTC
Statistics
Matches: 53, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
9 30 0.57
10 15 0.28
11 8 0.15
ACGTcount: A:0.84, C:0.00, G:0.14, T:0.01
Consensus pattern (10 bp):
AAGAGAAAAA
Found at i:6201486 original size:19 final size:19
Alignment explanation
Indices: 6201464--6201531 Score: 84
Period size: 19 Copynumber: 3.6 Consensus size: 19
6201454 ATTATGCTTG
*
6201464 AAGAGAAAAAAGTGAAAAA
1 AAGAGAAAAAAGAGAAAAA
*
6201483 AAGAGAAAAAAAAGAAAAA
1 AAGAGAAAAAAGAGAAAAA
* *
6201502 AAAAAAAAAAAGAAGAAAAA
1 AAGAGAAAAAAG-AGAAAAA
6201522 AA-AGAAAAAA
1 AAGAGAAAAAA
6201532 AAGGGGGGGT
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
19 33 0.79
20 9 0.21
ACGTcount: A:0.84, C:0.00, G:0.15, T:0.01
Consensus pattern (19 bp):
AAGAGAAAAAAGAGAAAAA
Found at i:6201500 original size:17 final size:16
Alignment explanation
Indices: 6201480--6201531 Score: 65
Period size: 14 Copynumber: 3.4 Consensus size: 16
6201470 AAAAAGTGAA
6201480 AAAAAGAGAAAAAAAAG
1 AAAAA-AGAAAAAAAAG
6201497 -AAAAA-AAAAAAAA-
1 AAAAAAGAAAAAAAAG
*
6201510 AAAGAAGAAAAAAAAG
1 AAAAAAGAAAAAAAAG
6201526 AAAAAA
1 AAAAAA
6201532 AAGGGGGGGT
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
14 12 0.40
15 9 0.30
16 9 0.30
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (16 bp):
AAAAAAGAAAAAAAAG
Found at i:6201511 original size:29 final size:29
Alignment explanation
Indices: 6201478--6201533 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
6201468 GAAAAAAGTG
6201478 AAAAAAAG-AGAAAAAAAAGAAAAAAAAA
1 AAAAAAAGAAGAAAAAAAAGAAAAAAAAA
6201506 AAAAAAAGAAGAAAAAAAAGAAAAAAAA
1 AAAAAAAGAAGAAAAAAAAGAAAAAAAA
6201534 GGGGGGGTCA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
28 8 0.30
29 19 0.70
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (29 bp):
AAAAAAAGAAGAAAAAAAAGAAAAAAAAA
Found at i:6201904 original size:19 final size:17
Alignment explanation
Indices: 6201864--6201909 Score: 58
Period size: 19 Copynumber: 2.6 Consensus size: 17
6201854 CTATTTCAAG
*
6201864 TTCAATTTA-TTTGAAA
1 TTCAATTTATTTTAAAA
6201880 TTCAATTTATTTTCAAAA
1 TTCAATTTATTTT-AAAA
6201898 TTTCAATTTATT
1 -TTCAATTTATT
6201910 CTTCTATGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
16 9 0.35
17 3 0.12
18 3 0.12
19 11 0.42
ACGTcount: A:0.35, C:0.09, G:0.02, T:0.54
Consensus pattern (17 bp):
TTCAATTTATTTTAAAA
Found at i:6202704 original size:82 final size:83
Alignment explanation
Indices: 6202567--6202958 Score: 680
Period size: 82 Copynumber: 4.7 Consensus size: 83
6202557 ACCTTAACTG
*
6202567 GAAGATGAATGTGCTCATAGCATCTTCTGGAAGTGATCTTTGAGTTATCTGATCTGGTTTGGCAG
1 GAAGATGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAG
6202632 AATCAATCATTGAATTT-
66 AATCAATCATTGAATTTA
* *
6202649 GAAGATGAATATGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGTCAG
1 GAAGATGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAG
6202714 AATCAATCATTGAATTT-
66 AATCAATCATTGAATTTA
*
6202731 GAAGATGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAATTATCTGATCTGGTTTGGCAG
1 GAAGATGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAG
*
6202796 AATCAATCATTGGATTTA
66 AATCAATCATTGAATTTA
* *
6202814 AAAGATGAATTTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAG
1 GAAGATGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAG
*
6202879 AACCAATCATTGAATTTA
66 AATCAATCATTGAATTTA
* *
6202897 GAAGATGAATTTGCTCATAGCATCTTCTGGAAGTGATCTTTGAGTTATCTGATCTGGTTTGG
1 GAAGATGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGG
6202959 TAGGAACTAC
Statistics
Matches: 295, Mismatches: 14, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
82 157 0.53
83 138 0.47
ACGTcount: A:0.26, C:0.14, G:0.22, T:0.38
Consensus pattern (83 bp):
GAAGATGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAG
AATCAATCATTGAATTTA
Found at i:6203892 original size:113 final size:113
Alignment explanation
Indices: 6203685--6204684 Score: 1758
Period size: 113 Copynumber: 8.8 Consensus size: 113
6203675 GCGAAGATTT
* *
6203685 AAATCCATTACTTGATGGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAG
1 AAATCCATCACTTGATGGATCAGCTTTTCCAGAGAAAGTTCATAAAGAGAAGAACTCATCTGAAG
*
6203750 AAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTACAT-
66 AAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGC-TC
* *
6203798 GAATTCATCACTTGATGGATCAGCTTTTCCAGAGAAAGTTCATAAAGAGAAGAACTCATCTGAAG
1 AAATCCATCACTTGATGGATCAGCTTTTCCAGAGAAAGTTCATAAAGAGAAGAACTCATCTGAAG
6203863 AAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTC
66 AAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTC
6203911 AAATCCATCACTTGATGGATCAGCTTTTCCAGAGAAAGTTCATAAAGAGAAGAACTCATCTGAAG
1 AAATCCATCACTTGATGGATCAGCTTTTCCAGAGAAAGTTCATAAAGAGAAGAACTCATCTGAAG
6203976 AAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTC
66 AAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTC
6204024 AAATCCATCACTTGATGGATCAGCTTTTCCAGAGAAAGTTCATAAAGAGAAGAACTCATCTGAAG
1 AAATCCATCACTTGATGGATCAGCTTTTCCAGAGAAAGTTCATAAAGAGAAGAACTCATCTGAAG
6204089 AAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTC
66 AAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTC
6204137 AAATCCATCACTTGATGGATCAGCTTTTCCAGAGAAAGTTCATAAAGAGAAGAACTCATCTGAAG
1 AAATCCATCACTTGATGGATCAGCTTTTCCAGAGAAAGTTCATAAAGAGAAGAACTCATCTGAAG
6204202 AAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTC
66 AAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTC
6204250 AAATCCATCACTTGATGGATCAGCTTTTCCAGAGAAAGTTCATAAAGAGAAGAACTCATCTGAAG
1 AAATCCATCACTTGATGGATCAGCTTTTCCAGAGAAAGTTCATAAAGAGAAGAACTCATCTGAAG
6204315 AAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTC
66 AAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTC
6204363 AAATCCATCACTTGATGGATCAGCTTTTCCAGAGAAAGTTCATAAAGAGAAGAACTCATCTGAAG
1 AAATCCATCACTTGATGGATCAGCTTTTCCAGAGAAAGTTCATAAAGAGAAGAACTCATCTGAAG
*
6204428 AAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCAT-
66 AAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGC-TC
* * *
6204476 GAATTCATCACTTGATGGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAG
1 AAATCCATCACTTGATGGATCAGCTTTTCCAGAGAAAGTTCATAAAGAGAAGAACTCATCTGAAG
* *
6204541 AAGTAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTACAT-
66 AAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGC-TC
* * * * * *
6204589 GAATTCATCAATTGATGGATCAGCCTTGCCAGA-AAGAGTTCATAATGAGAAGAACTCATC-GAA
1 AAATCCATCACTTGATGGATCAGCTTTTCCAGAGAA-AGTTCATAAAGAGAAGAACTCATCTG-A
*
6204652 AGAAGGATGAAGAAGTTCATAATGAGAAGAACT
64 AGAAGGAAGAAGAAGTTCATAATGAGAAGAACT
6204685 CATCAAGAGC
Statistics
Matches: 864, Mismatches: 19, Indels: 8
0.97 0.02 0.01
Matches are distributed among these distances:
112 4 0.00
113 859 0.99
114 1 0.00
ACGTcount: A:0.39, C:0.16, G:0.20, T:0.26
Consensus pattern (113 bp):
AAATCCATCACTTGATGGATCAGCTTTTCCAGAGAAAGTTCATAAAGAGAAGAACTCATCTGAAG
AAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTC
Found at i:6204954 original size:3 final size:3
Alignment explanation
Indices: 6204946--6205046 Score: 94
Period size: 3 Copynumber: 33.0 Consensus size: 3
6204936 ATTAATTTAT
* **
6204946 TTA TTA TTA TTA TAA AAA TTA TTA TTA TTA TTA TTA TTA TTA TTAA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A
* * * * * *
6204992 ATA TTA TTA TTA TAA TTA TAA TTA CTA ATA TTA TTA TTTA TTA CTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA
*
6205038 ATA TTA TTA
1 TTA TTA TTA
6205047 ATAAAAAATT
Statistics
Matches: 80, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
3 75 0.94
4 5 0.06
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (3 bp):
TTA
Found at i:6205004 original size:37 final size:37
Alignment explanation
Indices: 6204963--6205046 Score: 96
Period size: 37 Copynumber: 2.3 Consensus size: 37
6204953 TATTATAAAA
* * * *
6204963 ATTATTATTATTATTATTATTATTATTAAATATTATT
1 ATTATTATTATAATTACTAATATTATTAAATATTACT
* **
6205000 ATTATAATTATAATTACTAATATTATTATTTATTACT
1 ATTATTATTATAATTACTAATATTATTAAATATTACT
*
6205037 AATATTATTA
1 ATTATTATTA
6205047 ATAAAAAATT
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.57
Consensus pattern (37 bp):
ATTATTATTATAATTACTAATATTATTAAATATTACT
Found at i:6205006 original size:46 final size:46
Alignment explanation
Indices: 6204947--6205057 Score: 136
Period size: 46 Copynumber: 2.4 Consensus size: 46
6204937 TTAATTTATT
* * *
6204947 TATTATTATTATAAAAATTATTATTATTATTATTA-TTATTATTAAA
1 TATTATTATTATAAAAATTATTACTAATATTATTATTTATTACT-AA
** *
6204993 TATTATTATTATAATTATAATTACTAATATTATTATTTATTACTAA
1 TATTATTATTATAAAAATTATTACTAATATTATTATTTATTACTAA
*
6205039 TATTATTAATA-AAAAATTA
1 TATTATTATTATAAAAATTA
6205058 CAAGCCCAGT
Statistics
Matches: 54, Mismatches: 10, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
45 5 0.09
46 42 0.78
47 7 0.13
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (46 bp):
TATTATTATTATAAAAATTATTACTAATATTATTATTTATTACTAA
Found at i:6210220 original size:55 final size:54
Alignment explanation
Indices: 6210085--6210580 Score: 639
Period size: 53 Copynumber: 9.2 Consensus size: 54
6210075 GAACTCGAAT
* *
6210085 AATCTTTAACAATCGTGTCTGCCCCCTATTTCTTCAGAGAGTATAAGA-TCCAC
1 AATCTTCAACAATCGTGTCTGCCCCCTATTTCTTCAGAGAGTATAAGACTCAAC
* *
6210138 AATCTTCATCAATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAGACTCGAAC
1 AATCTTCAACAATCGTGTCTGCCCCCTATTTCTTCAGAGAGTATAAGACTC-AAC
* * * * *
6210193 AATCTTCAGCAATCGTGTCTACTCCCTA-TTCTTTCAGAGAGTATGAGACTCGAAT
1 AATCTTCAACAATCGTGTCTGCCCCCTATTTC-TTCAGAGAGTATAAGACTC-AAC
*
6210248 AATCTTCAACAATCGTGTCTGCTCCCTA-TTCTTTCAGAGAGTATAAGACTCGAAC
1 AATCTTCAACAATCGTGTCTGCCCCCTATTTC-TTCAGAGAGTATAAGACTC-AAC
* * * * * *
6210303 AAACTTTAACAATCGGGTCTACTCCCTATTTCTTCAGAGAGTATAAGAC-CCAC
1 AATCTTCAACAATCGTGTCTGCCCCCTATTTCTTCAGAGAGTATAAGACTCAAC
* *
6210356 AATCTTCATCAATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAGACTC-AC
1 AATCTTCAACAATCGTGTCTGCCCCCTATTTCTTCAGAGAGTATAAGACTCAAC
* * *
6210409 AATCTTCATCAATCGTGTTTGCCCCCTATTTTTTCAGAGAGTATAAGACTCGAAC
1 AATCTTCAACAATCGTGTCTGCCCCCTATTTCTTCAGAGAGTATAAGACTC-AAC
* * *
6210464 AATCTTCAACTATCGTGTCT-CCCCCTATATCTTCAGAGAGTATAAGAC-CCAC
1 AATCTTCAACAATCGTGTCTGCCCCCTATTTCTTCAGAGAGTATAAGACTCAAC
* * *
6210516 AATCTTCAACGATCGTGTCTGCTCCCTATTTCTTCAGAGAGTATAAGAC-CCAC
1 AATCTTCAACAATCGTGTCTGCCCCCTATTTCTTCAGAGAGTATAAGACTCAAC
6210569 AATCTTCAACAA
1 AATCTTCAACAA
6210581 ATGGGTTCAC
Statistics
Matches: 397, Mismatches: 38, Indels: 16
0.88 0.08 0.04
Matches are distributed among these distances:
52 21 0.05
53 182 0.46
54 33 0.08
55 158 0.40
56 3 0.01
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.31
Consensus pattern (54 bp):
AATCTTCAACAATCGTGTCTGCCCCCTATTTCTTCAGAGAGTATAAGACTCAAC
Found at i:6210667 original size:160 final size:159
Alignment explanation
Indices: 6210106--6210612 Score: 535
Period size: 160 Copynumber: 3.1 Consensus size: 159
6210096 ATCGTGTCTG
* * * *
6210106 CCCCCTA-TTTCTTCAGAGAGTATAAGA-TC-CACAATCTTCATCAATCGCGTCTGCCCCCTATT
1 CCCCCTATTTTC-TCAGAGAGTATAAGACTCGAACAATCTTCAAC-ATCGGGTCT-CCCCCTATA
* * * * *
6210168 TCTTCAGAGAGTATAAGACTCGAACAATCTTCAGCAATCGTGTCTACTCCCTA-TTCTTTCAGAG
63 TCTTCAGAGAGTATAAGAC-C-CACAATCTTCAACAATCGCGTCTGCCCCCTATTTC-TTCAGAG
* * * * *
6210232 AGTATGAGACTCGAATAATCTTCAACAATCGTG-TCTG
125 AGTATAAGAC-C-CACAATCTTCAACAATCGGGTTC-A
* * * * *
6210269 CTCCCTATTCTT-TCAGAGAGTATAAGACTCGAACAAACTTTAACAATCGGGTCTACTCCCTATT
1 CCCCCTATT-TTCTCAGAGAGTATAAGACTCGAACAATCTTCAAC-ATCGGGTCT-CCCCCTATA
*
6210333 TCTTCAGAGAGTATAAGACCCACAATCTTCATCAATCGCGTCTGCCCCCTATTTCTTCAGAGAGT
63 TCTTCAGAGAGTATAAGACCCACAATCTTCAACAATCGCGTCTGCCCCCTATTTCTTCAGAGAGT
* * * **
6210398 ATAAGACTCACAATCTTCATCAATCGTGTTTG
128 ATAAGACCCACAATCTTCAACAATCGGGTTCA
* *
6210430 CCCCCTATTTTTTCAGAGAGTATAAGACTCGAACAATCTTCAACTATCGTGTCTCCCCCTATATC
1 CCCCCTATTTTCTCAGAGAGTATAAGACTCGAACAATCTTCAAC-ATCGGGTCTCCCCCTATATC
* * *
6210495 TTCAGAGAGTATAAGACCCACAATCTTCAACGATCGTGTCTGCTCCCTATTTCTTCAGAGAGTAT
65 TTCAGAGAGTATAAGACCCACAATCTTCAACAATCGCGTCTGCCCCCTATTTCTTCAGAGAGTAT
6210560 AAGACCCACAATCTTCAACAAAT-GGGTTCA
130 AAGACCCACAATCTTCAAC-AATCGGGTTCA
* *
6210590 CTCCCTA-TTTCTCTAGGGAGTAT
1 CCCCCTATTTTCTC-AGAGAGTAT
6210613 GGAACTCAGA
Statistics
Matches: 297, Mismatches: 38, Indels: 21
0.83 0.11 0.06
Matches are distributed among these distances:
159 5 0.02
160 107 0.36
161 67 0.23
162 1 0.00
163 63 0.21
164 7 0.02
165 47 0.16
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.31
Consensus pattern (159 bp):
CCCCCTATTTTCTCAGAGAGTATAAGACTCGAACAATCTTCAACATCGGGTCTCCCCCTATATCT
TCAGAGAGTATAAGACCCACAATCTTCAACAATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATA
AGACCCACAATCTTCAACAATCGGGTTCA
Found at i:6210760 original size:51 final size:51
Alignment explanation
Indices: 6210578--6211340 Score: 877
Period size: 51 Copynumber: 14.8 Consensus size: 51
6210568 CAATCTTCAA
* * * * * *
6210578 CAAATGGGTTCACTCCCTATTTCTCTAGGGAGTATGGAACTCAGACATATTCTT
1 CAAACGGGTTCGCTCCTTCTTTCTTTAGGGAGTATGGAACTC-GA-ACA-TCTT
** * *
6210632 CAAACGGGTTCGCTCCCCCTTTCTCTAGGGAGTATAGAACTCGAACATCTCTT
1 CAAACGGGTTCGCTCCTTCTTTCTTTAGGGAGTATGGAACTCGAACA--TCTT
* * * *
6210685 CAAACGGGTTCGCTCATTCCTTCTTTAAGGAGTATAGAACTCGAACATCTT
1 CAAACGGGTTCGCTCCTTCTTTCTTTAGGGAGTATGGAACTCGAACATCTT
* *
6210736 CAAACGGGTTCGCTCCTTCTTTCTTTAAGGAGTATAGAACTCGAACATCTT
1 CAAACGGGTTCGCTCCTTCTTTCTTTAGGGAGTATGGAACTCGAACATCTT
* * * *
6210787 CAAATGGGTTTGCTCCCTCTTTCTTTAGGGAGTATAGAACTCGAACATCTCTT
1 CAAACGGGTTCGCTCCTTCTTTCTTTAGGGAGTATGGAACTCGAACA--TCTT
* *
6210840 C--ACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGAACTCGAACATCTT
1 CAAACGGGTTCGCTCCTTCTTTCTTTAGGGAGTATGGAACTCGAACATCTT
*
6210889 C-AACTGGGTTCGCTCCTTCTTTCTTTAAGGAGTATGGAACTCGAACATCTT
1 CAAAC-GGGTTCGCTCCTTCTTTCTTTAGGGAGTATGGAACTCGAACATCTT
* * * * * *
6210940 TAAACGGGTTCGCTCCTTCTTTCTTTAAGGATTATAGAACTCGCATATCTT
1 CAAACGGGTTCGCTCCTTCTTTCTTTAGGGAGTATGGAACTCGAACATCTT
* * *
6210991 CACACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGAACTC-AGACATCTATT
1 CAAACGGGTTCGCTCCTTCTTTCTTTAGGGAGTATGGAACTCGA-ACATC--TT
*
6211044 CAAACGGGTTCGCTCCTTCTTTCTTTAAGGAGTATGGAACTCGAACATCTT
1 CAAACGGGTTCGCTCCTTCTTTCTTTAGGGAGTATGGAACTCGAACATCTT
* * * * ** * *
6211095 TAAACGGTTTCGCTCCTTCTTTCTTTAAGGATTATAAAACTCGCATATCTT
1 CAAACGGGTTCGCTCCTTCTTTCTTTAGGGAGTATGGAACTCGAACATCTT
* * * *
6211146 CACACGGGTTCGCTCCTTCCTTCTCTAGGGAGTATGGAACTCGGACATCTT
1 CAAACGGGTTCGCTCCTTCTTTCTTTAGGGAGTATGGAACTCGAACATCTT
* * * * * *
6211197 TAAACGGGTTCGCTCATTCTTTCTTTAAGGAGTATAGAACTCGCATATCTT
1 CAAACGGGTTCGCTCCTTCTTTCTTTAGGGAGTATGGAACTCGAACATCTT
* * * *
6211248 CACACGGGTTCGCTCCTTCCTTCTCTAGGGAGTATGGAACTCGGACATCTT
1 CAAACGGGTTCGCTCCTTCTTTCTTTAGGGAGTATGGAACTCGAACATCTT
* * *
6211299 CAAACAGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGAACTC
1 CAAACGGGTTCGCTCCTTCTTTCTTTAGGGAGTATGGAACTC
6211341 AAATAATCTT
Statistics
Matches: 615, Mismatches: 84, Indels: 23
0.85 0.12 0.03
Matches are distributed among these distances:
49 5 0.01
50 2 0.00
51 468 0.76
52 5 0.01
53 97 0.16
54 38 0.06
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.33
Consensus pattern (51 bp):
CAAACGGGTTCGCTCCTTCTTTCTTTAGGGAGTATGGAACTCGAACATCTT
Found at i:6210978 original size:308 final size:307
Alignment explanation
Indices: 6210582--6211341 Score: 1005
Period size: 308 Copynumber: 2.5 Consensus size: 307
6210572 CTTCAACAAA
* * * * *
6210582 TGGGTTCACTCCCTATTTCTCTAGGGAGTATGGAACTCAGACATATTCTTCAAACGGGTTCGCTC
1 TGGGTTCGCTCCTTCTTTCTTTAAGGAGTATGGAACTC-GA-ATA-TCTTCAAACGGGTTCGCTC
** ** * *
6210647 CCCCTTTCTCTAGGGAGTATAGAACTCGAACATCTCTTCAAACGGGTTCGCTCATTCCTTCTTTA
63 CTTCTTTCTCTAGGGAGTATAGAACTCG-ACAT-TCTTCAAACGGGTTCGCTCCCTCTTTCTCTA
* *
6210712 AGGAGTATAGAACTC-GAACATC-TTCAAACGGGTTCGCTCCTTCTTTCTTTAAGGAGTATAGAA
126 GGGAGTATGGAACTCAG-ACATCATTCAAACGGGTTCGCTCCTTCTTTCTTTAAGGAGTATAGAA
* * * *
6210775 CTCGAACATCTTCAAATGGGTTT-GCTCCCTCTTTCTTTAGGGAGTATAGAACTCGAACATCTCT
190 CTCGAACATCTTCAAA-CGGTTTCGCTCCCTCTTTCTTTAAGGAGTATAAAACTCG--CATATCT
* *
6210839 T-CACGGGTTCGCTCCCTCTTTCTCTAGGGAGTATGGAACTCGAACATC-TTCAAC
252 TACACGGGTTCGCTCCCTCCTTCTCTAGGGAGTATGGAACTCGAACATCTTTAAAC
* *
6210893 TGGGTTCGCTCCTTCTTTCTTTAAGGAGTATGGAACTCGAACATCTTTAAACGGGTTCGCTCCTT
1 TGGGTTCGCTCCTTCTTTCTTTAAGGAGTATGGAACTCGAATATCTTCAAACGGGTTCGCTCCTT
* * * *
6210958 CTTTCTTTAAGGATTATAGAACTCG-CATATCTTCACACGGGTTCGCTCCCTCTTTCTCTAGGGA
66 CTTTCTCTAGGGAGTATAGAACTCGACAT-TCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGGGA
*
6211022 GTATGGAACTCAGACATCTATTCAAACGGGTTCGCTCCTTCTTTCTTTAAGGAGTATGGAACTCG
130 GTATGGAACTCAGACATC-ATTCAAACGGGTTCGCTCCTTCTTTCTTTAAGGAGTATAGAACTCG
* * *
6211087 AACATCTTTAAACGGTTTCGCTCCTTCTTTCTTTAAGGATTATAAAACTCGCATATCTTCACACG
194 AACATCTTCAAACGGTTTCGCTCCCTCTTTCTTTAAGGAGTATAAAACTCGCATATCTT-ACACG
* *
6211152 GGTTCGCTCCTTCCTTCTCTAGGGAGTATGGAACTCGGACATCTTTAAAC
258 GGTTCGCTCCCTCCTTCTCTAGGGAGTATGGAACTCGAACATCTTTAAAC
* * * *
6211202 -GGGTTCGCTCATTCTTTCTTTAAGGAGTATAGAACTCGCATATCTTCACACGGGTTCGCTCCTT
1 TGGGTTCGCTCCTTCTTTCTTTAAGGAGTATGGAACTCGAATATCTTCAAACGGGTTCGCTCCTT
* * *
6211266 CCTTCTCTAGGGAGTATGGAACTCGGACA-TCTTCAAACAGGTTCGCTCCCTCTTTCTCTAGGGA
66 CTTTCTCTAGGGAGTATAGAACTC-GACATTCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGGGA
6211330 GTATGGAACTCA
130 GTATGGAACTCA
6211342 AATAATCTTC
Statistics
Matches: 395, Mismatches: 45, Indels: 21
0.86 0.10 0.05
Matches are distributed among these distances:
306 54 0.14
307 6 0.02
308 290 0.73
309 8 0.02
310 4 0.01
311 33 0.08
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.33
Consensus pattern (307 bp):
TGGGTTCGCTCCTTCTTTCTTTAAGGAGTATGGAACTCGAATATCTTCAAACGGGTTCGCTCCTT
CTTTCTCTAGGGAGTATAGAACTCGACATTCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGGGAG
TATGGAACTCAGACATCATTCAAACGGGTTCGCTCCTTCTTTCTTTAAGGAGTATAGAACTCGAA
CATCTTCAAACGGTTTCGCTCCCTCTTTCTTTAAGGAGTATAAAACTCGCATATCTTACACGGGT
TCGCTCCCTCCTTCTCTAGGGAGTATGGAACTCGAACATCTTTAAAC
Found at i:6211745 original size:36 final size:36
Alignment explanation
Indices: 6211687--6211876 Score: 238
Period size: 36 Copynumber: 5.2 Consensus size: 36
6211677 ACTCTTCTGA
* * **
6211687 GAAGGCTTAAAATGGATATGCTTCACTACTT-TTTGGT
1 GAAGGCTTAAGATGG-TTTGCTTCACTA-TTCTCCGGT
* * *
6211724 GAAGACTTAAGATGGTTTGCTTCACTACTCTCTGGT
1 GAAGGCTTAAGATGGTTTGCTTCACTATTCTCCGGT
* *
6211760 GAAGACTTATGATGGTTTGCTTCACTATTCTCCGGT
1 GAAGGCTTAAGATGGTTTGCTTCACTATTCTCCGGT
* * *
6211796 GAAGGCTTCAGATTGATTGCTTCACTATTCTCCGGT
1 GAAGGCTTAAGATGGTTTGCTTCACTATTCTCCGGT
*
6211832 GAAGGCTTCAGATGGTTTGCTTCACTATTCTCCGGT
1 GAAGGCTTAAGATGGTTTGCTTCACTATTCTCCGGT
6211868 GAAGGCTTA
1 GAAGGCTTA
6211877 GGATTGACTT
Statistics
Matches: 136, Mismatches: 16, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
35 1 0.01
36 122 0.90
37 13 0.10
ACGTcount: A:0.22, C:0.19, G:0.23, T:0.36
Consensus pattern (36 bp):
GAAGGCTTAAGATGGTTTGCTTCACTATTCTCCGGT
Found at i:6212791 original size:127 final size:127
Alignment explanation
Indices: 6212607--6212917 Score: 430
Period size: 127 Copynumber: 2.4 Consensus size: 127
6212597 CTCAATAACT
* * *
6212607 TCTTGGTCTGAATCTTATT-TTCTCATCATGATGTGGGTTCAGTCGTGCCCCAACATTATCTTAT
1 TCTTGGTCTGAATCTT-TTCATCTCAACATGATGTGGGTTCAGTCGTGCCCCAACATTACCTTAT
* *
6212671 ACTGGTACGGGCCTTTCAAAATGCCCCTATTACCTCAAATTGTAAGGCTCATTCTTCATGCC-TC
65 ACTGGTACGAGCC-TTCAAAATGCCCC-ATCACCTCAAATTGTAAGGCTCATTCTTCATGCCTTC
6212735 -CTTGGTCTGAATCTTTTCATCTCAACATGATGTGGGTTCAGTCGTGCCCCAACATTACCTTATA
1 TCTTGGTCTGAATCTTTTCATCTCAACATGATGTGGGTTCAGTCGTGCCCCAACATTACCTTATA
* * *
6212799 CTGGTACGAGCCTTCAAAATGTCCCATCACCTCAGATTGTAAGGCTTATTCTTCATGCCTTC
66 CTGGTACGAGCCTTCAAAATGCCCCATCACCTCAAATTGTAAGGCTCATTCTTCATGCCTTC
** * * * * *
6212861 TTCTTCTTCTGAATCTTGTCATCTCAACCTAATGTGGGTTCAGCCGTGCCACAACAT
1 -TCTTGGTCTGAATCTTTTCATCTCAACATGATGTGGGTTCAGTCGTGCCCCAACAT
6212918 ATCGCAACTT
Statistics
Matches: 164, Mismatches: 15, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
125 31 0.19
126 16 0.10
127 69 0.42
128 48 0.29
ACGTcount: A:0.22, C:0.27, G:0.16, T:0.35
Consensus pattern (127 bp):
TCTTGGTCTGAATCTTTTCATCTCAACATGATGTGGGTTCAGTCGTGCCCCAACATTACCTTATA
CTGGTACGAGCCTTCAAAATGCCCCATCACCTCAAATTGTAAGGCTCATTCTTCATGCCTTC
Found at i:6216858 original size:21 final size:20
Alignment explanation
Indices: 6216815--6216927 Score: 111
Period size: 21 Copynumber: 5.5 Consensus size: 20
6216805 GCGATGTGGA
6216815 CTTCTCGTCTTTATGAAGGT
1 CTTCTCGTCTTTATGAAGGT
6216835 CTTCTCGTCTTTATGAAGGGT
1 CTTCTCGTCTTTATGAA-GGT
* *
6216856 CTTCTCGTCTTGATGAATAG-
1 CTTCTCGTCTTTATGAA-GGT
* * * *
6216876 CACTCTCGTCTTGATGAATGA
1 C-TTCTCGTCTTTATGAAGGT
*
6216897 CATTCTCGTCTTTATGAATGCT
1 C-TTCTCGTCTTTATGAA-GGT
6216919 CTTCTCGTC
1 CTTCTCGTC
6216928 CTTGGTACGA
Statistics
Matches: 79, Mismatches: 10, Indels: 7
0.82 0.10 0.07
Matches are distributed among these distances:
20 19 0.24
21 59 0.75
22 1 0.01
ACGTcount: A:0.17, C:0.23, G:0.19, T:0.42
Consensus pattern (20 bp):
CTTCTCGTCTTTATGAAGGT
Found at i:6216925 original size:42 final size:42
Alignment explanation
Indices: 6216812--6216927 Score: 139
Period size: 42 Copynumber: 2.8 Consensus size: 42
6216802 CATGCGATGT
* *
6216812 GGACTTCTCGTCTTTATGAA-GGTCTTCTCGTCTTTATGAAG
1 GGACTTCTCGTCTTTATGAATGCTCTTCTCGTCTTGATGAAG
* * *
6216853 GGTCTTCTCGTCTTGATGAATAGCAC-TCTCGTCTTGATGAA-
1 GGACTTCTCGTCTTTATGAAT-GCTCTTCTCGTCTTGATGAAG
*
6216894 TGACATTCTCGTCTTTATGAATGCTCTTCTCGTC
1 GGAC-TTCTCGTCTTTATGAATGCTCTTCTCGTC
6216928 CTTGGTACGA
Statistics
Matches: 62, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
41 23 0.37
42 37 0.60
43 2 0.03
ACGTcount: A:0.17, C:0.22, G:0.20, T:0.41
Consensus pattern (42 bp):
GGACTTCTCGTCTTTATGAATGCTCTTCTCGTCTTGATGAAG
Found at i:6223814 original size:110 final size:110
Alignment explanation
Indices: 6223400--6223804 Score: 684
Period size: 110 Copynumber: 3.7 Consensus size: 110
6223390 TCGAGACAAG
6223400 CTGACTGTCAACAAACAACTTTTCAGTTTCATTCAGAGTCAATTTCAACTTCACAGCGAAGGATA
1 CTGACTGTCAACAAACAACTTTTCAGTTTCATTCAGAGTCAATTTCAACTTCACAGCGAAGGATA
*
6223465 TTGGACTCGAGACAACACAAGCTCAACTTCACAGTGAAAGGGCGA
66 TTGGACTCGAGACAACACAAGCTCAACTTCACAGCGAAAGGGCGA
* * * *
6223510 CTGACTATCAACAAACAACTTTTCAGTTTCATTCAGAGTCAATTCCAACTTCACAACGAAGAATA
1 CTGACTGTCAACAAACAACTTTTCAGTTTCATTCAGAGTCAATTTCAACTTCACAGCGAAGGATA
* *
6223575 TTGGACTCGAGAAAACACAAGCTCAACTTCACAGCGAAGGGGCGA
66 TTGGACTCGAGACAACACAAGCTCAACTTCACAGCGAAAGGGCGA
* *
6223620 CTGACTGTCAACAAACAACTTTTCAGCTTCATTCAGATTCAATTTCAACTTCACAGCGAAGGATA
1 CTGACTGTCAACAAACAACTTTTCAGTTTCATTCAGAGTCAATTTCAACTTCACAGCGAAGGATA
* *
6223685 TTGGACTTGAGACAACACAAGCTCAACTTCACAGCGAATGGGCGA
66 TTGGACTCGAGACAACACAAGCTCAACTTCACAGCGAAAGGGCGA
* *
6223730 TTGACTGTCAACAAACAACTTTTCAGTTTCATTCAGAGTCAATTTCAACTTTACAGCGAAGGATA
1 CTGACTGTCAACAAACAACTTTTCAGTTTCATTCAGAGTCAATTTCAACTTCACAGCGAAGGATA
*
6223795 TTGAACTCGA
66 TTGGACTCGA
6223805 AGTGACACAA
Statistics
Matches: 273, Mismatches: 22, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
110 273 1.00
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.25
Consensus pattern (110 bp):
CTGACTGTCAACAAACAACTTTTCAGTTTCATTCAGAGTCAATTTCAACTTCACAGCGAAGGATA
TTGGACTCGAGACAACACAAGCTCAACTTCACAGCGAAAGGGCGA
Found at i:6224951 original size:37 final size:37
Alignment explanation
Indices: 6224901--6225049 Score: 262
Period size: 37 Copynumber: 4.0 Consensus size: 37
6224891 AACATAACGT
6224901 TAGAGTTTTACTATGATTCAAACTCCTAAAAATAGGA
1 TAGAGTTTTACTATGATTCAAACTCCTAAAAATAGGA
*
6224938 TAGAGTTTTACTATGATTCAAACTCCTAAAAATATGA
1 TAGAGTTTTACTATGATTCAAACTCCTAAAAATAGGA
* *
6224975 TAGAGTTTTACTATAATTCAAACTCCTAAAAATATGA
1 TAGAGTTTTACTATGATTCAAACTCCTAAAAATAGGA
*
6225012 TAGAGTTTTACTATGATTCAAAATCCTAAAAATAGGA
1 TAGAGTTTTACTATGATTCAAACTCCTAAAAATAGGA
6225049 T
1 T
6225050 CCATAAGCAT
Statistics
Matches: 107, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 107 1.00
ACGTcount: A:0.42, C:0.13, G:0.11, T:0.34
Consensus pattern (37 bp):
TAGAGTTTTACTATGATTCAAACTCCTAAAAATAGGA
Found at i:6225467 original size:19 final size:18
Alignment explanation
Indices: 6225445--6225513 Score: 52
Period size: 19 Copynumber: 3.7 Consensus size: 18
6225435 TTATTATTAG
6225445 TATTATATTTTATATGTTT
1 TATTATATTTTATAT-TTT
* *
6225464 TATTTTGTTTTATATTTTT
1 TATTATATTTTATA-TTTT
6225483 TAATT-TATTATTA-ATTTT
1 T-ATTATATT-TTATATTTT
**
6225501 TAAAATATTTTAT
1 TATTATATTTTAT
6225514 TTATATGCAT
Statistics
Matches: 40, Mismatches: 5, Indels: 11
0.71 0.09 0.20
Matches are distributed among these distances:
17 4 0.10
18 9 0.22
19 20 0.50
20 7 0.17
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (18 bp):
TATTATATTTTATATTTT
Found at i:6225589 original size:22 final size:22
Alignment explanation
Indices: 6225523--6225594 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
6225513 TTTATATGCA
* *
6225523 TATTCATTATATTTTTTTATCT-
1 TATT-ATTATATTTTTCTCTCTC
*
6225545 TATT-TTAT-TTCATTTCCCT-TC
1 TATTATTATATT--TTTCTCTCTC
6225566 TATTATTATATTTTTCTCTCTC
1 TATTATTATATTTTTCTCTCTC
6225588 TATTATT
1 TATTATT
6225595 TATCTATACA
Statistics
Matches: 40, Mismatches: 4, Indels: 12
0.71 0.07 0.21
Matches are distributed among these distances:
19 2 0.05
20 5 0.12
21 14 0.35
22 17 0.43
23 2 0.05
ACGTcount: A:0.19, C:0.15, G:0.00, T:0.65
Consensus pattern (22 bp):
TATTATTATATTTTTCTCTCTC
Found at i:6225756 original size:3 final size:3
Alignment explanation
Indices: 6225748--6225780 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
6225738 CTTACTGTTT
6225748 TTA TTA TTA TTA TTA TTA TTA TTA -TA TT- TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
6225781 TATTTCTATT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
2 4 0.14
3 24 0.86
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (3 bp):
TTA
Found at i:6225828 original size:25 final size:24
Alignment explanation
Indices: 6225796--6225842 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 24
6225786 CTATTTACCC
6225796 TTTTTTCCTATAT-TTCATTTTTAT
1 TTTTTTCCT-TATCTTCATTTTTAT
*
6225820 TTTTATTCCTTATCTTTATTTTT
1 TTTT-TTCCTTATCTTCATTTTT
6225843 TTAATCTTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 7 0.35
25 13 0.65
ACGTcount: A:0.15, C:0.13, G:0.00, T:0.72
Consensus pattern (24 bp):
TTTTTTCCTTATCTTCATTTTTAT
Found at i:6231718 original size:147 final size:148
Alignment explanation
Indices: 6231447--6231744 Score: 564
Period size: 147 Copynumber: 2.0 Consensus size: 148
6231437 CCAGCGGAGT
6231447 TGATCGGTATAGGCAACAATTTGAGTGTCTTGAGGGCAAAAATGAAAGAGGCATTGTGCTCAGAA
1 TGATCGGTATAGGCAACAATTTGAGTGTCTTGAGGGCAAAAATGAAAGAGGCATTGTGCTCAGAA
6231512 GGAAATATGCATCTTAACCTAGGTGAATTTCTAGAAATTATACACATCTTCTTTGTTTTTCTTTT
66 GGAAATATGCATCTTAACCTAGGTGAATTTCTAGAAATTATACACATCTTCTTTGTTTTTCTTTT
6231577 C-TTTCTTTGACTGAATA
131 CTTTTCTTTGACTGAATA
6231594 TGATCGGTATAGGCAACAATTTGAGTGTCTTGAGGGCAAAAATGAAAGAGGCATTGTGCTCAGAA
1 TGATCGGTATAGGCAACAATTTGAGTGTCTTGAGGGCAAAAATGAAAGAGGCATTGTGCTCAGAA
6231659 GGAAATATGCATCTTAACCTAGGTGAATTTCTAGAAATATATACACATTCTTCTTT-TTTTTCTT
66 GGAAATATGCATCTTAACCTAGGTGAATTTCTAGAAAT-TATACACA-TCTTCTTTGTTTTTCTT
6231723 TTCTTTTCTTTGACTGAATA
129 TTCTTTTCTTTGACTGAATA
6231743 TG
1 TG
6231745 CTACTTTTAT
Statistics
Matches: 148, Mismatches: 0, Indels: 4
0.97 0.00 0.03
Matches are distributed among these distances:
147 103 0.70
148 19 0.13
149 26 0.18
ACGTcount: A:0.30, C:0.14, G:0.19, T:0.37
Consensus pattern (148 bp):
TGATCGGTATAGGCAACAATTTGAGTGTCTTGAGGGCAAAAATGAAAGAGGCATTGTGCTCAGAA
GGAAATATGCATCTTAACCTAGGTGAATTTCTAGAAATTATACACATCTTCTTTGTTTTTCTTTT
CTTTTCTTTGACTGAATA
Found at i:6240766 original size:96 final size:96
Alignment explanation
Indices: 6240602--6240795 Score: 388
Period size: 96 Copynumber: 2.0 Consensus size: 96
6240592 TAACCTTTAT
6240602 TCTATCTCCCATTTGGTTGAACCTAAGACTTATAATGAAGCCATTCAAAATCCTGTATGGATTAA
1 TCTATCTCCCATTTGGTTGAACCTAAGACTTATAATGAAGCCATTCAAAATCCTGTATGGATTAA
6240667 AGCCATGAATGAGGATATTTTCGCTTTGGAA
66 AGCCATGAATGAGGATATTTTCGCTTTGGAA
6240698 TCTATCTCCCATTTGGTTGAACCTAAGACTTATAATGAAGCCATTCAAAATCCTGTATGGATTAA
1 TCTATCTCCCATTTGGTTGAACCTAAGACTTATAATGAAGCCATTCAAAATCCTGTATGGATTAA
6240763 AGCCATGAATGAGGATATTTTCGCTTTGGAA
66 AGCCATGAATGAGGATATTTTCGCTTTGGAA
6240794 TC
1 TC
6240796 CAATAATACT
Statistics
Matches: 98, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
96 98 1.00
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.34
Consensus pattern (96 bp):
TCTATCTCCCATTTGGTTGAACCTAAGACTTATAATGAAGCCATTCAAAATCCTGTATGGATTAA
AGCCATGAATGAGGATATTTTCGCTTTGGAA
Found at i:6246665 original size:15 final size:15
Alignment explanation
Indices: 6246645--6246674 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
6246635 AGAAAATATT
6246645 TTTGATTTGAAAGAC
1 TTTGATTTGAAAGAC
6246660 TTTGATTTGAAAGAC
1 TTTGATTTGAAAGAC
6246675 ACCCAAGTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.07, G:0.20, T:0.40
Consensus pattern (15 bp):
TTTGATTTGAAAGAC
Found at i:6262958 original size:116 final size:116
Alignment explanation
Indices: 6262754--6262986 Score: 439
Period size: 116 Copynumber: 2.0 Consensus size: 116
6262744 ATGTATCGGA
*
6262754 TATGCACATCCCATCAGAAGATTTTTGTTGGGTGAAAAACTCCTTAACAGGGGTTATTAAAGATC
1 TATGCACATCCCATCAGAAGATTTTTGCTGGGTGAAAAACTCCTTAACAGGGGTTATTAAAGATC
*
6262819 CCTTTCAGCCTGATATGGTGGTGAGAGATTTGGCAAAGGAGGGTTTCCAGG
66 CCTTTCAGCCTGAGATGGTGGTGAGAGATTTGGCAAAGGAGGGTTTCCAGG
6262870 TATGCACATCCCATCAGAAGATTTTTGCTGGGTGAAAAACTCCTTAACAGGGGTTATTAAAGATC
1 TATGCACATCCCATCAGAAGATTTTTGCTGGGTGAAAAACTCCTTAACAGGGGTTATTAAAGATC
*
6262935 CCTTTCAGCCTGAGATGGTGGTGAGAGCTTTGGCAAAGGAGGGTTTCCAGG
66 CCTTTCAGCCTGAGATGGTGGTGAGAGATTTGGCAAAGGAGGGTTTCCAGG
6262986 T
1 T
6262987 TAAGATAGTA
Statistics
Matches: 114, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
116 114 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (116 bp):
TATGCACATCCCATCAGAAGATTTTTGCTGGGTGAAAAACTCCTTAACAGGGGTTATTAAAGATC
CCTTTCAGCCTGAGATGGTGGTGAGAGATTTGGCAAAGGAGGGTTTCCAGG
Found at i:6263795 original size:369 final size:366
Alignment explanation
Indices: 6263120--6263847 Score: 1413
Period size: 369 Copynumber: 2.0 Consensus size: 366
6263110 CCTTTGTTGA
6263120 GTGAAGATGAAGTTTCTTTGGCCTATTGCTTGGTCGAGTTAGTTGGTTTACCGCTTCTTAGCTGG
1 GTGAAGATGAAGTTTCTTTGGCCTATTGCTTGGTCGAGTTAGTTGGTTTACCGCTTCTTAGCTGG
6263185 AGCGTACCTTTCTGGAGCTTGGAGGTAAGTGGGGAAAGGTTGTTAGTATAATGGAGGAAACAAGA
66 AGCGTACCTTTCTGGAGCTTGGAGGTAAGTGGGGAAAGGTTGTTAGTATAATGGAGGAAACAAGA
6263250 AATAGAGATGACCTCTCTTCGGCCAGAATGCTGTTAAGGGTTGCAAGCCCTTTTGATGTTCAAGA
131 AATAGAGATGACCTCTCTTCGGCCAGAATGCTGTTAAGGGTTGCAAGCCCTTTTGATGTTCAAGA
6263315 ATCTATTATTGTAGGATCTTATGGAAGATCGTTTAAAGTTAAAATTAATGTGGGATCCAGCTCTA
196 ATCTATTATTGTAGGATCTTATGGAAGATCGTTTAAAGTTAAAATTAATGTGGGATCCAGCTCTA
6263380 AATCTATTTCTGAAGCTTTTGGTGCCATGAGGCAGAATTCTGCATATGGCAGCAACAGTGACAAT
261 AATCTATTTCTGAAGCTTTTGGTGCCATGAGGCAGAATTCTGCATATGGCAGCAACAGTGACAAT
6263445 GGTGGAAATACAGAGAAGGAAG-AGACAATAGGGGCGGACT
326 GGTGGAAATACAGAGAAGGAAGAAGACAATAGGGGCGGACT
6263485 GTGAAGATGAAGTTTCTTTGGCCTATTGCTTGGTCGAGTTAGTTGGTTTACCGCTTCTTAGCTGG
1 GTGAAGATGAAGTTTCTTTGGCCTATTGCTTGGTCGAGTTAGTTGGTTTACCGCTTCTTAGCTGG
6263550 AGCGTACCTTTTCTGGAGAAGCTTGGAGGTAAGTGGGGAAAGGTTGTTAGTATAATGGAGGAAAC
66 AGCGTACC-TTTCT-G-G-AGCTTGGAGGTAAGTGGGGAAAGGTTGTTAGTATAATGGAGGAAAC
6263615 AAGAAATAGAGATGACCTCTCTTCGGCCAGAATGCTGTTAAGGGTTGCAAGCCCTTTTGATGTTC
127 AAGAAATAGAGATGACCTCTCTTCGGCCAGAATGCTGTTAAGGGTTGCAAGCCCTTTTGATGTTC
6263680 AAGAATCTATTATTGTAGGATCTTATGGAAGATCGTTTAAAGTTAAAATTAATGTGGGATCCAGC
192 AAGAATCTATTATTGTAGGATCTTATGGAAGATCGTTTAAAGTTAAAATTAATGTGGGATCCAGC
6263745 TCTAAATCTATTTCTGAAGCTTTTGGTGCCATGAGGCAGAATTCTGCATATGGCAGCAACAGTGA
257 TCTAAATCTATTTCTGAAGCTTTTGGTGCCATGAGGCAGAATTCTGCATATGGCAGCAACAGTGA
6263810 CAATGGTGGAAATACAGAGAAGGAAGAAGACAATAGGG
322 CAATGGTGGAAATACAGAGAAGGAAGAAGACAATAGGG
6263848 AGGACTCAGC
Statistics
Matches: 358, Mismatches: 0, Indels: 5
0.99 0.00 0.01
Matches are distributed among these distances:
365 73 0.20
366 5 0.01
367 1 0.00
368 1 0.00
369 267 0.75
370 11 0.03
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (366 bp):
GTGAAGATGAAGTTTCTTTGGCCTATTGCTTGGTCGAGTTAGTTGGTTTACCGCTTCTTAGCTGG
AGCGTACCTTTCTGGAGCTTGGAGGTAAGTGGGGAAAGGTTGTTAGTATAATGGAGGAAACAAGA
AATAGAGATGACCTCTCTTCGGCCAGAATGCTGTTAAGGGTTGCAAGCCCTTTTGATGTTCAAGA
ATCTATTATTGTAGGATCTTATGGAAGATCGTTTAAAGTTAAAATTAATGTGGGATCCAGCTCTA
AATCTATTTCTGAAGCTTTTGGTGCCATGAGGCAGAATTCTGCATATGGCAGCAACAGTGACAAT
GGTGGAAATACAGAGAAGGAAGAAGACAATAGGGGCGGACT
Found at i:6267015 original size:19 final size:20
Alignment explanation
Indices: 6266979--6267017 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
6266969 TGAGTATGTA
* *
6266979 TACTTAAATTATTCAAATTT
1 TACTAAAATAATTCAAATTT
6266999 TACTAAAATAATT-AAATTT
1 TACTAAAATAATTCAAATTT
6267018 ATTTATTTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (20 bp):
TACTAAAATAATTCAAATTT
Found at i:6267584 original size:60 final size:55
Alignment explanation
Indices: 6267520--6267651 Score: 165
Period size: 57 Copynumber: 2.3 Consensus size: 55
6267510 CAATTCGTGT
* * *
6267520 GTATGTGTTTGTTCTTGTTTTTTCCTTTTCTTTTCTAAGTATACAGTTATTCATAATTTC
1 GTATGTGTCTGTTCTTG-TTTTT--TTTCCTTTTCTAAGTATACAGTTATTCAT--TTGC
* * *
6267580 GTATGTGTCTGTTCTTGTTTTTTTTCCTTTTTTAAGTATGCAGTTATTCGTTTGC
1 GTATGTGTCTGTTCTTGTTTTTTTTCCTTTTCTAAGTATACAGTTATTCATTTGC
6267635 GTATGTGTCTGTTCTTG
1 GTATGTGTCTGTTCTTG
6267652 ATAATCATAA
Statistics
Matches: 66, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
55 20 0.30
57 25 0.38
59 5 0.08
60 16 0.24
ACGTcount: A:0.13, C:0.13, G:0.17, T:0.58
Consensus pattern (55 bp):
GTATGTGTCTGTTCTTGTTTTTTTTCCTTTTCTAAGTATACAGTTATTCATTTGC
Found at i:6268810 original size:9 final size:9
Alignment explanation
Indices: 6268796--6268820 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
6268786 GCACCTTGTA
6268796 GATGAAGAT
1 GATGAAGAT
6268805 GATGAAGAT
1 GATGAAGAT
6268814 GATGAAG
1 GATGAAG
6268821 TTGTTATGCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.36, T:0.20
Consensus pattern (9 bp):
GATGAAGAT
Found at i:6277496 original size:21 final size:21
Alignment explanation
Indices: 6277464--6277511 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
6277454 GAGCTTTAAT
* *
6277464 TTCAGAAA-TAGAATTGAAGA
1 TTCAAAAATTAGAAGTGAAGA
* *
6277484 TTTAAAAATTAGAAGTGGAGA
1 TTCAAAAATTAGAAGTGAAGA
6277505 TTCAAAA
1 TTCAAAA
6277512 GCAGCAAGAT
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
20 6 0.27
21 16 0.73
ACGTcount: A:0.50, C:0.04, G:0.19, T:0.27
Consensus pattern (21 bp):
TTCAAAAATTAGAAGTGAAGA
Found at i:6286886 original size:53 final size:53
Alignment explanation
Indices: 6286824--6287030 Score: 265
Period size: 53 Copynumber: 3.9 Consensus size: 53
6286814 TTCAACCAGT
*
6286824 GGGTTCGCTCCCTCTTGCTTCAAGGAGTAGAACTCGAACAATCTTCTG-CTTAC
1 GGGTTCGCTCCCTCTTGCTTCAGGGAGTAGAACTCGAACAATCTTCTGTC-TAC
** *
6286877 GGGTTCGCTCCCTCTTGCTTCAGGGCTTAGAACTCGAACAATCTTCTGTCTAT
1 GGGTTCGCTCCCTCTTGCTTCAGGGAGTAGAACTCGAACAATCTTCTGTCTAC
** ** *
6286930 GGGTTCGCTCCCTCTTGCTTCAGGGAGTAGAACTCGAACAATCTTCAATAAAT
1 GGGTTCGCTCCCTCTTGCTTCAGGGAGTAGAACTCGAACAATCTTCTGTCTAC
* *
6286983 GGGTCCGCTCCCTATCTG-TTCAGGGAGTATAGAACTCGAACAATCTTC
1 GGGTTCGCTCCCTCT-TGCTTCAGGGAG--TAGAACTCGAACAATCTTC
6287031 ATAAAATGGG
Statistics
Matches: 138, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
53 116 0.84
54 3 0.02
55 19 0.14
ACGTcount: A:0.22, C:0.27, G:0.21, T:0.30
Consensus pattern (53 bp):
GGGTTCGCTCCCTCTTGCTTCAGGGAGTAGAACTCGAACAATCTTCTGTCTAC
Found at i:6286992 original size:106 final size:108
Alignment explanation
Indices: 6286823--6287030 Score: 298
Period size: 106 Copynumber: 1.9 Consensus size: 108
6286813 CTTCAACCAG
** * *
6286823 TGGGTTCGCTCCCTCTTGCTTCAAGGAGTAGAACTCGAACAATCTTCTGCTTACGGGTTCGCTCC
1 TGGGTTCGCTCCCTCTTGCTTCAAGGAGTAGAACTCGAACAATCTTCTAATAACGGGTCCGCTCC
*
6286888 CTCT-TGCTTCAGGG-CT-TAGAACTCGAACAATCTTCTGTCTA
66 CTATCTG-TTCAGGGACTATAGAACTCGAACAATCTTCTGTCTA
* *
6286929 TGGGTTCGCTCCCTCTTGCTTCAGGGAGTAGAACTCGAACAATCTTC-AATAAATGGGTCCGCTC
1 TGGGTTCGCTCCCTCTTGCTTCAAGGAGTAGAACTCGAACAATCTTCTAAT-AACGGGTCCGCTC
*
6286993 CCTATCTGTTCAGGGAGTATAGAACTCGAACAATCTTC
65 CCTATCTGTTCAGGGACTATAGAACTCGAACAATCTTC
6287031 ATAAAATGGG
Statistics
Matches: 90, Mismatches: 8, Indels: 6
0.87 0.08 0.06
Matches are distributed among these distances:
105 1 0.01
106 67 0.74
107 3 0.03
108 19 0.21
ACGTcount: A:0.22, C:0.27, G:0.21, T:0.30
Consensus pattern (108 bp):
TGGGTTCGCTCCCTCTTGCTTCAAGGAGTAGAACTCGAACAATCTTCTAATAACGGGTCCGCTCC
CTATCTGTTCAGGGACTATAGAACTCGAACAATCTTCTGTCTA
Found at i:6287038 original size:55 final size:54
Alignment explanation
Indices: 6286806--6287125 Score: 234
Period size: 53 Copynumber: 6.0 Consensus size: 54
6286796 ACTCTTCTTT
** * * * *
6286806 GAACAATCTTCAACCAGTGGGTTCGCTCCCTCTTGCTTCAAGGAG--TAGAACTC
1 GAACAATCTTCAATAAATGGGTCCGCTCCCTATTG-TTCAGGGAGTATAGAACTC
** * * * * *
6286859 GAACAATCTTCTGCT-TACGGGTTCGCTCCCTCTTGCTTCAGGG-CT-TAGAACTC
1 GAACAATCTTC-AATAAATGGGTCCGCTCCCTATTG-TTCAGGGAGTATAGAACTC
** ** * *
6286912 GAACAATCTTCTGTCTATGGGTTCGCTCCCTCTTGCTTCAGGGAG--TAGAACTC
1 GAACAATCTTCAATAAATGGGTCCGCTCCCTATTG-TTCAGGGAGTATAGAACTC
6286965 GAACAATCTTCAATAAATGGGTCCGCTCCCTATCTGTTCAGGGAGTATAGAACTC
1 GAACAATCTTCAATAAATGGGTCCGCTCCCTAT-TGTTCAGGGAGTATAGAACTC
** *
6287020 GAACAATCTTC-ATAAAATGGGTTTGCTCCCTATCCGTTCAGGGAGTATA-AGACTC
1 GAACAATCTTCAAT-AAATGGGTCCGCTCCCTAT-TGTTCAGGGAGTATAGA-ACTC
* * * *
6287075 G----ATCTTCAATAAATGTGTCCGCTCCCTATTCCTTCAGAGAGTATAGGACTC
1 GAACAATCTTCAATAAATGGGTCCGCTCCCTATT-GTTCAGGGAGTATAGAACTC
6287126 AATCTTCAAC
Statistics
Matches: 227, Mismatches: 28, Indels: 26
0.81 0.10 0.09
Matches are distributed among these distances:
51 38 0.17
52 3 0.01
53 125 0.55
54 5 0.02
55 56 0.25
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (54 bp):
GAACAATCTTCAATAAATGGGTCCGCTCCCTATTGTTCAGGGAGTATAGAACTC
Found at i:6287101 original size:51 final size:51
Alignment explanation
Indices: 6286968--6287236 Score: 287
Period size: 51 Copynumber: 5.2 Consensus size: 51
6286958 AGAACTCGAA
* * * *
6286968 CAATCTTCAATAAATGGGTCCGCTCCCTA-TCTGTTCAGGGAGTATAGAACT
1 CAATCTTCAATAAATGTGTCCGCTCCCTATTC-CTTCAGAGAGTATAGGACT
* ** * *
6287019 CGAACAATCTTC-ATAAAATGGGTTTGCTCCCTA-TCCGTTCAGGGAGTATAAGACT
1 ----CAATCTTCAAT-AAATGTGTCCGCTCCCTATTCC-TTCAGAGAGTATAGGACT
*
6287074 CGATCTTCAATAAATGTGTCCGCTCCCTATTCCTTCAGAGAGTATAGGACT
1 CAATCTTCAATAAATGTGTCCGCTCCCTATTCCTTCAGAGAGTATAGGACT
* *
6287125 CAATCTTCAACGAACT-TGTCCGCTCCCTATTCCTTCAGAGAGTATAGGACT
1 CAATCTTCAA-TAAATGTGTCCGCTCCCTATTCCTTCAGAGAGTATAGGACT
* * *
6287176 CAATTTTCAACGAACT-TGTCCGCTCCCTATTCCTTCAGAGAGTATAGGACT
1 CAATCTTCAA-TAAATGTGTCCGCTCCCTATTCCTTCAGAGAGTATAGGACT
6287227 CAATCTTCAA
1 CAATCTTCAA
6287237 CAAACGAGTT
Statistics
Matches: 193, Mismatches: 16, Indels: 14
0.87 0.07 0.06
Matches are distributed among these distances:
51 141 0.73
52 8 0.04
54 2 0.01
55 42 0.22
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (51 bp):
CAATCTTCAATAAATGTGTCCGCTCCCTATTCCTTCAGAGAGTATAGGACT
Found at i:6287237 original size:51 final size:51
Alignment explanation
Indices: 6287044--6287237 Score: 302
Period size: 51 Copynumber: 3.8 Consensus size: 51
6287034 AAATGGGTTT
* * * * *
6287044 GCTCCCTA-TCCGTTCAGGGAGTATAAGACTCGATCTTCAA-TAAATGTGTCC
1 GCTCCCTATTCC-TTCAGAGAGTATAGGACTCAATCTTCAACGAACT-TGTCC
6287095 GCTCCCTATTCCTTCAGAGAGTATAGGACTCAATCTTCAACGAACTTGTCC
1 GCTCCCTATTCCTTCAGAGAGTATAGGACTCAATCTTCAACGAACTTGTCC
*
6287146 GCTCCCTATTCCTTCAGAGAGTATAGGACTCAATTTTCAACGAACTTGTCC
1 GCTCCCTATTCCTTCAGAGAGTATAGGACTCAATCTTCAACGAACTTGTCC
6287197 GCTCCCTATTCCTTCAGAGAGTATAGGACTCAATCTTCAAC
1 GCTCCCTATTCCTTCAGAGAGTATAGGACTCAATCTTCAAC
6287238 AAACGAGTTT
Statistics
Matches: 134, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
51 128 0.96
52 6 0.04
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (51 bp):
GCTCCCTATTCCTTCAGAGAGTATAGGACTCAATCTTCAACGAACTTGTCC
Found at i:6288555 original size:19 final size:19
Alignment explanation
Indices: 6288528--6288574 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 19
6288518 TTTTTCTTTT
*
6288528 TTCCATTTTCCATTTTTCC
1 TTCCCTTTTCCATTTTTCC
*
6288547 TTCCCTTTTCCATTTTTTC
1 TTCCCTTTTCCATTTTTCC
*
6288566 TTCTCTTTT
1 TTCCCTTTT
6288575 TTTTCTTTTC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.06, C:0.30, G:0.00, T:0.64
Consensus pattern (19 bp):
TTCCCTTTTCCATTTTTCC
Found at i:6288578 original size:14 final size:15
Alignment explanation
Indices: 6288559--6288591 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
6288549 CCCTTTTCCA
6288559 TTTTTTCTTCTC-TT
1 TTTTTTCTTCTCATT
*
6288573 TTTTTTCTTTTCATT
1 TTTTTTCTTCTCATT
6288588 TTTT
1 TTTT
6288592 CCATCATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (15 bp):
TTTTTTCTTCTCATT
Found at i:6288607 original size:16 final size:16
Alignment explanation
Indices: 6288587--6288620 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
6288577 TTCTTTTCAT
6288587 TTTTTCCATCATTTTTC
1 TTTTTCC-TCATTTTTC
*
6288604 TTTTTTCTCATTTTTC
1 TTTTTCCTCATTTTTC
6288620 T
1 T
6288621 CATTTTTTCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.09, C:0.21, G:0.00, T:0.71
Consensus pattern (16 bp):
TTTTTCCTCATTTTTC
Found at i:6288619 original size:9 final size:9
Alignment explanation
Indices: 6288595--6288627 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
6288585 ATTTTTTCCA
6288595 TCATTTTTC
1 TCATTTTTC
6288604 T--TTTTTC
1 TCATTTTTC
6288611 TCATTTTTC
1 TCATTTTTC
6288620 TCATTTTT
1 TCATTTTT
6288628 TCTCTTTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
7 7 0.32
9 15 0.68
ACGTcount: A:0.09, C:0.18, G:0.00, T:0.73
Consensus pattern (9 bp):
TCATTTTTC
Found at i:6288630 original size:19 final size:18
Alignment explanation
Indices: 6288580--6288635 Score: 64
Period size: 19 Copynumber: 3.1 Consensus size: 18
6288570 CTTTTTTTTC
6288580 TTTTCATTTTTTC-CATCAT
1 TTTTCATTTTTTCTCAT--T
6288599 TTTTC-TTTTTTCTCATT
1 TTTTCATTTTTTCTCATT
6288616 TTTCTCATTTTTTCTC-TT
1 TTT-TCATTTTTTCTCATT
6288634 TT
1 TT
6288636 ATTTCTTCTT
Statistics
Matches: 34, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
17 4 0.12
18 13 0.38
19 17 0.50
ACGTcount: A:0.09, C:0.20, G:0.00, T:0.71
Consensus pattern (18 bp):
TTTTCATTTTTTCTCATT
Found at i:6288635 original size:9 final size:9
Alignment explanation
Indices: 6288598--6288635 Score: 51
Period size: 9 Copynumber: 4.2 Consensus size: 9
6288588 TTTTCCATCA
6288598 TTTT-TCTT
1 TTTTCTCTT
*
6288606 TTTTCTCAT
1 TTTTCTCTT
6288615 TTTTCTCATT
1 TTTTCTC-TT
6288625 TTTTCTCTT
1 TTTTCTCTT
6288634 TT
1 TT
6288636 ATTTCTTCTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
8 4 0.15
9 14 0.54
10 8 0.31
ACGTcount: A:0.05, C:0.18, G:0.00, T:0.76
Consensus pattern (9 bp):
TTTTCTCTT
Found at i:6298402 original size:45 final size:46
Alignment explanation
Indices: 6298290--6298415 Score: 191
Period size: 45 Copynumber: 2.7 Consensus size: 46
6298280 TGTTATCCAC
* *
6298290 AAAAAGAAATCCTAACCGCATGATATCTAATTCGCATGCTTATTCAAA
1 AAAAATAAA-CCTAACCGCATGATATCTAGTTCGCATGCTTATTC-AA
* *
6298338 AAAAATAAACCTAACCGCATGATATCTAGTTCGCATGCTTGTTC-G
1 AAAAATAAACCTAACCGCATGATATCTAGTTCGCATGCTTATTCAA
6298383 AAAAATAAACCTAACCGCATGATATCTAGTTCG
1 AAAAATAAACCTAACCGCATGATATCTAGTTCG
6298416 TAAGCATTTA
Statistics
Matches: 74, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
45 33 0.45
47 33 0.45
48 8 0.11
ACGTcount: A:0.39, C:0.21, G:0.13, T:0.27
Consensus pattern (46 bp):
AAAAATAAACCTAACCGCATGATATCTAGTTCGCATGCTTATTCAA
Found at i:6298433 original size:47 final size:45
Alignment explanation
Indices: 6298290--6298435 Score: 193
Period size: 47 Copynumber: 3.1 Consensus size: 45
6298280 TGTTATCCAC
* * *
6298290 AAAAAGAAATCCTAACCGCATGATATCTAATTCGCATGCTTATTCAAA
1 AAAAATAAA-CCTAACCGCATGATATCTAGTTCGCATGCTTATTC--G
*
6298338 AAAAATAAACCTAACCGCATGATATCTAGTTCGCATGCTTGTTCG
1 AAAAATAAACCTAACCGCATGATATCTAGTTCGCATGCTTATTCG
* *
6298383 AAAAATAAACCTAACCGCATGATATCTAGTTCGTAAGCATTTATTCG
1 AAAAATAAACCTAACCGCATGATATCTAGTTCGCATGC--TTATTCG
6298430 AAAAAT
1 AAAAAT
6298436 GAAAATAAAT
Statistics
Matches: 89, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
45 36 0.40
47 45 0.51
48 8 0.09
ACGTcount: A:0.40, C:0.20, G:0.12, T:0.28
Consensus pattern (45 bp):
AAAAATAAACCTAACCGCATGATATCTAGTTCGCATGCTTATTCG
Found at i:6306722 original size:91 final size:92
Alignment explanation
Indices: 6306545--6306714 Score: 263
Period size: 91 Copynumber: 1.9 Consensus size: 92
6306535 TGATGTTGAA
*
6306545 GATGACACGCTCATCCGCGATGAAGAGAATCTTGGCCATCTTTAGGAAAGATGATAATACGGTTC
1 GATGACACGCTCATCCGCGATGAAGAGAATCTTGGCCATCTTTAGGAAAGATGATAACACGGTTC
* *
6306610 CACTCTGCTGGGGACATCTGGTCGAGG
66 CACTCTGCTGCGGACAGCTGGTCGAGG
* * *
6306637 GATGACACTGCTCATCCGCGATGAAGAG-TTC-TGGCCATCTTTAGGAATGATGCTAACACGGTT
1 GATGACAC-GCTCATCCGCGATGAAGAGAATCTTGGCCATCTTTAGGAAAGATGATAACACGGTT
6306700 CCACTCTGCTGCGGA
65 CCACTCTGCTGCGGA
6306715 TGGCTGGTTA
Statistics
Matches: 72, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
91 43 0.60
92 10 0.14
93 19 0.26
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.25
Consensus pattern (92 bp):
GATGACACGCTCATCCGCGATGAAGAGAATCTTGGCCATCTTTAGGAAAGATGATAACACGGTTC
CACTCTGCTGCGGACAGCTGGTCGAGG
Found at i:6306959 original size:40 final size:42
Alignment explanation
Indices: 6306733--6307369 Score: 340
Period size: 40 Copynumber: 14.8 Consensus size: 42
6306723 TATCTGAGGT
* *
6306733 TGACACGGCTCCTACGTGATGAGGAGATCTGG-TC-AGGGGA
1 TGACACGGCTCCTACGTGATGAGGAGGTCTGGATCTAAGGGA
* * * * * * *
6306773 TGACACGACTCATACGTCATGAAGAGTTATGG-TC-AGGGGA
1 TGACACGGCTCCTACGTGATGAGGAGGTCTGGATCTAAGGGA
* ** * * * *
6306813 TAACACTACTCATACGTGATGAAGAGTTCTTAGCCATCTAAAGGTGA
1 TGACACGGCTCCTACGTGATGAGGAGGTC-T-G-GATCT-AAGG-GA
* *
6306860 TAACACGGTTCCTACGTGATGAGGACGG-CTGGTTATCTAAGGG-
1 TGACACGGCTCCTACGTGATGAGGA-GGTCTGG--ATCTAAGGGA
* *
6306903 TGACACGGCTCCTACGTGATGAGGAGGTCTAG-TC-GAGGGA
1 TGACACGGCTCCTACGTGATGAGGAGGTCTGGATCTAAGGGA
* * * *
6306943 TGACACTGCTCATACGTGATGAAGAGTTCTTGGCCATCTAAAGGTGA
1 TGACACGGCTCCTACGTGATGAGGAGGTC-TGG--ATCT-AAGG-GA
* * *
6306990 TAACACAGTTCCTACGTGATGAGGACGG-CTGGTTATCTAAGGG-
1 TGACACGGCTCCTACGTGATGAGGA-GGTCTGG--ATCTAAGGGA
*
6307033 TGACACGGCTCCTACGTGATGAGGAGGTCTGG-TC-GAGGGA
1 TGACACGGCTCCTACGTGATGAGGAGGTCTGGATCTAAGGGA
* * * *
6307073 TGACACTGCTCATACGTGATGAAGAGTTCTTGGCCATCTAAAGGTGA
1 TGACACGGCTCCTACGTGATGAGGAGGTC-TGG--ATCT-AAGG-GA
* * * *
6307120 TAACACGGTTCCTACGTGATGAGGACGACTGGTTATCTAAGGG-
1 TGACACGGCTCCTACGTGATGAGGAGGTCTGG--ATCTAAGGGA
* * *
6307163 TGACACGGCTCCTACGTGATGAGGAGATCTGG-TC-ATGAGA
1 TGACACGGCTCCTACGTGATGAGGAGGTCTGGATCTAAGGGA
* * * *
6307203 TGACACGGCTCATACGTAATGAAGAGTTCTGGTCATCTTTAGGATGGGCGA
1 TGACACGGCTCCTACGTGATGAGGAGGTCTGG--ATC--TA--A--GG-GA
* * * *
6307254 TAACACGGTTCCTACGTGATGAGGACGTCTGGTTTATCT-AGGGG
1 TGACACGGCTCCTACGTGATGAGGAGGTCTGG---ATCTAAGGGA
* * *
6307298 TGACACGGCTCCTACGTGATGAAGAGATCTAG-TC--AGGAGA
1 TGACACGGCTCCTACGTGATGAGGAGGTCTGGATCTAAGG-GA
* * *
6307338 TGACACGGCTCATACGTGATGAAGAGTTCTGG
1 TGACACGGCTCCTACGTGATGAGGAGGTCTGG
6307370 CCATCTTTAG
Statistics
Matches: 466, Mismatches: 88, Indels: 86
0.73 0.14 0.13
Matches are distributed among these distances:
39 14 0.03
40 175 0.38
41 6 0.01
42 5 0.01
43 81 0.17
44 36 0.08
45 15 0.03
46 29 0.06
47 70 0.15
48 2 0.00
50 2 0.00
51 27 0.06
52 4 0.01
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.25
Consensus pattern (42 bp):
TGACACGGCTCCTACGTGATGAGGAGGTCTGGATCTAAGGGA
Found at i:6306965 original size:130 final size:129
Alignment explanation
Indices: 6306804--6307375 Score: 860
Period size: 130 Copynumber: 4.4 Consensus size: 129
6306794 AAGAGTTATG
* * *
6306804 GTCAGGGGATAACACTACTCATACGTGATGAAGAGTTCTTAGCCATCTAAAGGTGATAACACGGT
1 GTCA-GGGATGACACTGCTCATACGTGATGAAGAGTTCTTGGCCATCTAAAGGTGATAACACGGT
*
6306869 TCCTACGTGATGAGGACGGCTGGTTATCTAAGGGTGACACGGCTCCTACGTGATGAGGAGGTCTA
65 TCCTACGTGATGAGGACGGCTGGTTATCTAAGGGTGACACGGCTCCTACGTGATGAGGAGATCTA
*
6306934 GTCGAGGGATGACACTGCTCATACGTGATGAAGAGTTCTTGGCCATCTAAAGGTGATAACACAGT
1 GTC-AGGGATGACACTGCTCATACGTGATGAAGAGTTCTTGGCCATCTAAAGGTGATAACACGGT
* *
6306999 TCCTACGTGATGAGGACGGCTGGTTATCTAAGGGTGACACGGCTCCTACGTGATGAGGAGGTCTG
65 TCCTACGTGATGAGGACGGCTGGTTATCTAAGGGTGACACGGCTCCTACGTGATGAGGAGATCTA
6307064 GTCGAGGGATGACACTGCTCATACGTGATGAAGAGTTCTTGGCCATCTAAAGGTGATAACACGGT
1 GTC-AGGGATGACACTGCTCATACGTGATGAAGAGTTCTTGGCCATCTAAAGGTGATAACACGGT
* *
6307129 TCCTACGTGATGAGGACGACTGGTTATCTAAGGGTGACACGGCTCCTACGTGATGAGGAGATCTG
65 TCCTACGTGATGAGGACGGCTGGTTATCTAAGGGTGACACGGCTCCTACGTGATGAGGAGATCTA
* * * * * *
6307194 GTCATGAGATGACACGGCTCATACGTAATGAAGAGTTC-TGGTCATCTTTAGGATGGGCGATAAC
1 GTCA-GGGATGACACTGCTCATACGTGATGAAGAGTTCTTGGCCATC--TA--A-AGGTGATAAC
* * *
6307258 ACGGTTCCTACGTGATGAGGACGTCTGGTTTATCTAGGGGTGACACGGCTCCTACGTGATGAAGA
60 ACGGTTCCTACGTGATGAGGACGGCTGG-TTATCTAAGGGTGACACGGCTCCTACGTGATGAGGA
6307323 GATCTA
124 GATCTA
*
6307329 GTCAGGAGATGACACGGCTCATACGTGATGAAGAGTTC-TGGCCATCT
1 GTCAGG-GATGACACTGCTCATACGTGATGAAGAGTTCTTGGCCATCT
6307376 TTAGGGATAC
Statistics
Matches: 412, Mismatches: 21, Indels: 15
0.92 0.05 0.03
Matches are distributed among these distances:
129 8 0.02
130 283 0.69
131 3 0.01
133 2 0.00
134 36 0.09
135 80 0.19
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (129 bp):
GTCAGGGATGACACTGCTCATACGTGATGAAGAGTTCTTGGCCATCTAAAGGTGATAACACGGTT
CCTACGTGATGAGGACGGCTGGTTATCTAAGGGTGACACGGCTCCTACGTGATGAGGAGATCTA
Found at i:6307428 original size:28 final size:28
Alignment explanation
Indices: 6307388--6307495 Score: 144
Period size: 28 Copynumber: 3.9 Consensus size: 28
6307378 AGGGATACTG
* ** **
6307388 GTTTCAAGAGAAACCGACTCAAAGATCA
1 GTTTCAAGAAAAACAAACTCAAAGATTT
* *
6307416 GTTTCAAGAGAAACAGACTCAAAGATTT
1 GTTTCAAGAAAAACAAACTCAAAGATTT
*
6307444 GTTTCAGGAAAAACAAACTCAAAGATTT
1 GTTTCAAGAAAAACAAACTCAAAGATTT
6307472 GTTTCAAGAAAAACAAACTCAAAG
1 GTTTCAAGAAAAACAAACTCAAAG
6307496 CTGATGTGTT
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 73 1.00
ACGTcount: A:0.46, C:0.17, G:0.16, T:0.21
Consensus pattern (28 bp):
GTTTCAAGAAAAACAAACTCAAAGATTT
Found at i:6307588 original size:35 final size:34
Alignment explanation
Indices: 6307540--6307636 Score: 99
Period size: 36 Copynumber: 2.7 Consensus size: 34
6307530 ACAAAAATTC
* *
6307540 GTTTCAAGGGAAACGATCTCAAAGATGTGT-GTTTT
1 GTTTCAAGAGAAAC-ATCTCAAAGATG-GTAATTTT
6307575 GTTTCAAGAGAAACATACTCAAAGATGGTAAATTTT
1 GTTTCAAGAGAAACAT-CTCAAAGATGGT-AATTTT
*
6307611 GTTTCTAA-AGAAACAAACTCAAAGAT
1 GTTTC-AAGAGAAAC-ATCTCAAAGAT
6307637 TTTTTCCAAA
Statistics
Matches: 54, Mismatches: 3, Indels: 9
0.82 0.05 0.14
Matches are distributed among these distances:
34 4 0.07
35 23 0.43
36 24 0.44
37 3 0.06
ACGTcount: A:0.39, C:0.12, G:0.19, T:0.30
Consensus pattern (34 bp):
GTTTCAAGAGAAACATCTCAAAGATGGTAATTTT
Found at i:6307848 original size:92 final size:91
Alignment explanation
Indices: 6307749--6307922 Score: 251
Period size: 91 Copynumber: 1.9 Consensus size: 91
6307739 CGTTTCAAGG
* * ** *
6307749 GAAACGACTCAAAGA-TTTCTCAAGAAGATCTGTCTCAAGAGAGACAAAGTTTTGTTTTAAAAGA
1 GAAACGACCCAAAAATTTTCTCAAGAA-AT-TGTCTCAAGAGAGACAAAACTTTGTTTCAAAAGA
6307813 AATAAACTCAAAGATTTTTATTTCAAAA
64 AATAAACTCAAAGATTTTTATTTCAAAA
* *
6307841 GAAACGACCCAAAAATTTTTTCAGGAAATTGTCTCAAGAGAGACAAAACTTTGTTTCAAAAGAAA
1 GAAACGACCCAAAAATTTTCTCAAGAAATTGTCTCAAGAGAGACAAAACTTTGTTTCAAAAGAAA
*
6307906 TATACTCAAAGATTTTT
66 TAAACTCAAAGATTTTT
6307923 TTCACGAAAT
Statistics
Matches: 73, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
91 49 0.67
92 15 0.21
93 9 0.12
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (91 bp):
GAAACGACCCAAAAATTTTCTCAAGAAATTGTCTCAAGAGAGACAAAACTTTGTTTCAAAAGAAA
TAAACTCAAAGATTTTTATTTCAAAA
Found at i:6307936 original size:63 final size:63
Alignment explanation
Indices: 6307833--6307987 Score: 224
Period size: 63 Copynumber: 2.5 Consensus size: 63
6307823 AAGATTTTTA
* * * *
6307833 TTTCAAAAGAAAC-GACCCAAA-AATTTTTTCAGGAAATTGTCTCAAGAGAGACAAAACTTTG
1 TTTCAAAAGAAACAAACTCAAAGATTTTTTTCACGAAATTGTCTCAAGAGAGACAAAACTTTG
* *
6307894 TTTCAAAAGAAATATACTCAAAGATTTTTTTCACGAAATTGTCTCAAGAGAGACAAAACTTTG
1 TTTCAAAAGAAACAAACTCAAAGATTTTTTTCACGAAATTGTCTCAAGAGAGACAAAACTTTG
* *
6307957 TTTCAAAAGAAACAAACTTAAATATTTTTTT
1 TTTCAAAAGAAACAAACTCAAAGATTTTTTT
6307988 TCTCAAAACT
Statistics
Matches: 83, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
61 12 0.14
62 6 0.07
63 65 0.78
ACGTcount: A:0.43, C:0.14, G:0.12, T:0.32
Consensus pattern (63 bp):
TTTCAAAAGAAACAAACTCAAAGATTTTTTTCACGAAATTGTCTCAAGAGAGACAAAACTTTG
Found at i:6308401 original size:104 final size:105
Alignment explanation
Indices: 6308211--6308521 Score: 374
Period size: 104 Copynumber: 3.0 Consensus size: 105
6308201 CAATTTTGAA
* * * * * *
6308211 AATCTCAAGTGAGATTGATTTTGTTTCAAGTAAAACAACTTTGAAATTTGTAT-TCTAAGGGAAA
1 AATCTCAAGTGAGATTAATTTTGTTTCAAGTGAAACAAATTCGAAATTTGTATCTCAAAGGAAAA
* * *
6308275 ATGTCTCAAGTGAGACGAAATTTGTTTTGAAATAAACAAT
66 ATGTCTCAAGCGAGACGAAATTTGTTTTGAAAGAAACAAC
* *
6308315 AATCTCAAGTGAGATTAATTTTGTTTCATGTGAAGCAAATTCGAAATTTGTATCTCAAAGGAAAA
1 AATCTCAAGTGAGATTAATTTTGTTTCAAGTGAAACAAATTCGAAATTTGTATCTCAAAGGAAAA
* *
6308380 ATGTCTCAAGCGAGAC-TAATTTGTTTTGAAAGAAATAAC
66 ATGTCTCAAGCGAGACGAAATTTGTTTTGAAAGAAACAAC
* * * * * *
6308419 AATCTCCAGTGAGATTAATTTCGTTTCAAGTGAATCAAATTCGAAATTTATATCTTAAAGAAAAA
1 AATCTCAAGTGAGATTAATTTTGTTTCAAGTGAAACAAATTCGAAATTTGTATCTCAAAG-GAAA
** * * *
6308484 AATGTCTCAAATGAGACGAAGTTTATTTTTGAGAGAAA
65 AATGTCTCAAGCGAGACGAAATTT-GTTTTGAAAGAAA
6308522 TTATCTCAAA
Statistics
Matches: 177, Mismatches: 26, Indels: 5
0.85 0.12 0.02
Matches are distributed among these distances:
104 120 0.68
105 42 0.24
106 4 0.02
107 11 0.06
ACGTcount: A:0.39, C:0.11, G:0.17, T:0.33
Consensus pattern (105 bp):
AATCTCAAGTGAGATTAATTTTGTTTCAAGTGAAACAAATTCGAAATTTGTATCTCAAAGGAAAA
ATGTCTCAAGCGAGACGAAATTTGTTTTGAAAGAAACAAC
Found at i:6311892 original size:15 final size:16
Alignment explanation
Indices: 6311874--6311903 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
6311864 ATGGCAGATC
6311874 AAAATCCAG-ACGGGG
1 AAAATCCAGAACGGGG
6311889 AAAATCCAGAACGGG
1 AAAATCCAGAACGGG
6311904 AAAGAAAGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.43, C:0.20, G:0.30, T:0.07
Consensus pattern (16 bp):
AAAATCCAGAACGGGG
Found at i:6316526 original size:21 final size:19
Alignment explanation
Indices: 6316500--6316538 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
6316490 AAGACATGGC
6316500 GGTGGCAAGTGCCCTGTTGAG
1 GGTGGCAAGT-CCCT-TTGAG
*
6316521 GGTGGCCAGTCCCTTTGA
1 GGTGGCAAGTCCCTTTGA
6316539 TATACAGGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 4 0.24
21 9 0.53
ACGTcount: A:0.13, C:0.23, G:0.38, T:0.26
Consensus pattern (19 bp):
GGTGGCAAGTCCCTTTGAG
Found at i:6318846 original size:13 final size:13
Alignment explanation
Indices: 6318828--6318853 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
6318818 GCAACCTTTT
6318828 ATTCGGACAGTGC
1 ATTCGGACAGTGC
6318841 ATTCGGACAGTGC
1 ATTCGGACAGTGC
6318854 TAAGGCACCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.31, T:0.23
Consensus pattern (13 bp):
ATTCGGACAGTGC
Found at i:6319451 original size:193 final size:195
Alignment explanation
Indices: 6319122--6319509 Score: 762
Period size: 193 Copynumber: 2.0 Consensus size: 195
6319112 AATGGCTTGG
6319122 TAAGCCCTTCACAGTTCGCATTTATTCTGGGTAGACAACTGTTAGATTGTGCTCTTTTAGCGAAT
1 TAAGCCCTTCACAGTTCGCATTTATTCTGGGTAGACAACTGTTAGATTGTGCTCTTTTAGCGAAT
6319187 GAAGGCATTGACTATTGGAGAAAATTAGGGAGAAAAGGAGTTGTATTCAAAGTTGATTTCTGTAG
66 GAAGGCATTGACTATTGGAGAAAATTAGGGAGAAAAGGAGTTGTATTCAAAGTTGATTTCTGTAG
6319252 GGCTTATGATTCGGTTGAGTGGCCTATCTTATTCAGAATA-TGAAGGTTACGGG-TTTGGGGAAA
131 GGCTTATGATTCGGTTGAGTGGCCTATCTTATTCAGAATATTGAAGGTTACGGGTTTTGGGGAAA
6319315 TAAGCCCTTCACAGTTCGCATTTATTCTGGGTAGACAACTGTTAGATTGTGCTCTTTTAGCGAAT
1 TAAGCCCTTCACAGTTCGCATTTATTCTGGGTAGACAACTGTTAGATTGTGCTCTTTTAGCGAAT
6319380 GAAGGCATTGACTATTGGAGAAAATTAGGGAGAAAAGGAGTTGTATTCAAAGTTGATTTCTGTAG
66 GAAGGCATTGACTATTGGAGAAAATTAGGGAGAAAAGGAGTTGTATTCAAAGTTGATTTCTGTAG
6319445 GGCTTATGATTCGGTTGAGTGGCCTATCTTATTCAGAATATTGAAGGTTACGGGTTTTGGGGAAA
131 GGCTTATGATTCGGTTGAGTGGCCTATCTTATTCAGAATATTGAAGGTTACGGGTTTTGGGGAAA
6319510 AATGGATCTC
Statistics
Matches: 193, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
193 170 0.88
194 13 0.07
195 10 0.05
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.34
Consensus pattern (195 bp):
TAAGCCCTTCACAGTTCGCATTTATTCTGGGTAGACAACTGTTAGATTGTGCTCTTTTAGCGAAT
GAAGGCATTGACTATTGGAGAAAATTAGGGAGAAAAGGAGTTGTATTCAAAGTTGATTTCTGTAG
GGCTTATGATTCGGTTGAGTGGCCTATCTTATTCAGAATATTGAAGGTTACGGGTTTTGGGGAAA
Found at i:6325427 original size:3 final size:3
Alignment explanation
Indices: 6325419--6325508 Score: 110
Period size: 3 Copynumber: 29.7 Consensus size: 3
6325409 TTCATTTAAA
*
6325419 TAT TAT TAT TAT TAT TAT TAT TAT TAT AAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
6325467 AAT TACT AAT T-T TAT TAC TAA TAT TAT TAT TAAT TAT TAT TA
1 TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TA
6325509 CAAACGGGCC
Statistics
Matches: 75, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
2 2 0.03
3 68 0.91
4 5 0.07
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:6326852 original size:19 final size:21
Alignment explanation
Indices: 6326830--6326870 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
6326820 ATAGTTATAA
6326830 ATATATA-TAAT-AATTATTT
1 ATATATATTAATAAATTATTT
6326849 ATATATATTTAATAAATTATTT
1 ATATATA-TTAATAAATTATTT
6326871 TGATATTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.37
21 4 0.21
22 8 0.42
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (21 bp):
ATATATATTAATAAATTATTT
Found at i:6326876 original size:24 final size:22
Alignment explanation
Indices: 6326830--6326870 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
6326820 ATAGTTATAA
*
6326830 ATATATATAAT-AATTATTTAT
1 ATATATTTAATAAATTATTTAT
6326851 ATATATTTAATAAATTATTT
1 ATATATTTAATAAATTATTT
6326871 TGATATTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (22 bp):
ATATATTTAATAAATTATTTAT
Found at i:6327535 original size:18 final size:17
Alignment explanation
Indices: 6327512--6327562 Score: 50
Period size: 18 Copynumber: 2.9 Consensus size: 17
6327502 TTTCTTTCAA
6327512 ATTTTTTATTTATTTAT
1 ATTTTTTATTTATTTAT
*
6327529 -TATTTTTATAATATTTAT
1 AT-TTTTTAT-TTATTTAT
*
6327547 ATGTTTTATTTTATTT
1 ATTTTTTA-TTTATTT
6327563 GCAAGTATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 7
0.73 0.08 0.19
Matches are distributed among these distances:
16 1 0.04
17 7 0.26
18 17 0.63
19 2 0.07
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.73
Consensus pattern (17 bp):
ATTTTTTATTTATTTAT
Found at i:6334275 original size:81 final size:82
Alignment explanation
Indices: 6333979--6334318 Score: 478
Period size: 82 Copynumber: 4.2 Consensus size: 82
6333969 AATGGAACAA
6333979 ATGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAAAACC
1 ATGAATGTGCTCA-AGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAAAACC
* * *
6334044 GATCATTGAATATGGAACAA
65 AATCATTGAATTTGG-A-AG
*
6334064 ATGAATGTGCTCATAGCATCTTCTGGAAGTG---TTTGAGTTATCTGATCTAGTTTGGCAAAACC
1 ATGAATGTGCTCA-AGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAAAACC
6334126 AATCATTGAATTTGGAA-
65 AATCATTGAATTTGGAAG
*
6334143 AGGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAAAACC
1 ATGAATGTGCTCA-AGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAAAACC
*
6334208 AATCATTGAATTTAGAAG
65 AATCATTGAATTTGGAAG
* * * *
6334226 ATGAATTTGTTC-AGCATCTTCTGGAAGTGTTCTTTGAGTTATCTAATCTGG-TTGGACAGAACC
1 ATGAATGTGCTCAAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGG-CAAAACC
6334289 AATCATTGAA-TTGGAAG
65 AATCATTGAATTTGGAAG
*
6334306 ATGAATTTGCTCA
1 ATGAATGTGCTCA
6334319 TAGTAGAAAT
Statistics
Matches: 236, Mismatches: 13, Indels: 16
0.89 0.05 0.06
Matches are distributed among these distances:
79 30 0.13
80 22 0.09
81 55 0.23
82 89 0.38
83 9 0.04
85 31 0.13
ACGTcount: A:0.28, C:0.14, G:0.22, T:0.35
Consensus pattern (82 bp):
ATGAATGTGCTCAAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAAAACCA
ATCATTGAATTTGGAAG
Found at i:6336935 original size:22 final size:22
Alignment explanation
Indices: 6336906--6336960 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 22
6336896 ATCTACACTC
**
6336906 TTCAAAGATGGTAGATTCTCTT
1 TTCAAAGATGACAGATTCTCTT
*
6336928 TTTAAAGATGACAGATTCTCTT
1 TTCAAAGATGACAGATTCTCTT
6336950 TTCAAAGATGA
1 TTCAAAGATGA
6336961 AAACTTTATG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.33, C:0.13, G:0.16, T:0.38
Consensus pattern (22 bp):
TTCAAAGATGACAGATTCTCTT
Found at i:6337721 original size:113 final size:113
Alignment explanation
Indices: 6337523--6337867 Score: 663
Period size: 113 Copynumber: 3.1 Consensus size: 113
6337513 TTAGCAAAGA
* * *
6337523 TTCAAATCCATCATCTGATGGATTAACATTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTG
1 TTCAAATCCATCATCTGATGGATTATCATTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTG
6337588 AAGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTG
66 AAGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTG
6337636 TTCAAATCCATCATCTGATGGATTATCATTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTG
1 TTCAAATCCATCATCTGATGGATTATCATTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTG
6337701 AAGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTG
66 AAGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTG
6337749 TTCAAATCCATCATCTGATGGATTATCATTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTG
1 TTCAAATCCATCATCTGATGGATTATCATTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTG
6337814 AAGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTG
66 AAGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTG
6337862 TTCAAA
1 TTCAAA
6337868 GAAGGTTCAT
Statistics
Matches: 229, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
113 229 1.00
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.28
Consensus pattern (113 bp):
TTCAAATCCATCATCTGATGGATTATCATTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTG
AAGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTG
Found at i:6337837 original size:40 final size:40
Alignment explanation
Indices: 6337790--6337928 Score: 129
Period size: 40 Copynumber: 3.4 Consensus size: 40
6337780 CCAGAGAAGG
6337790 TTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAA
1 TTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAA
* ** * *** ** *
6337830 TTCATAATGAGAAGAATTTGT-TCAACCTTTTGTTCA-AAGAAGG
1 TTCATAATGAGAAGAACTCATCTGAA---GAAG-GAAGAAGAA-A
6337873 TTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAA
1 TTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAA
6337913 TTCATAATGAGAAGAA
1 TTCATAATGAGAAGAA
6337929 TTTGTTCAAC
Statistics
Matches: 72, Mismatches: 20, Indels: 14
0.68 0.19 0.13
Matches are distributed among these distances:
39 3 0.04
40 35 0.49
41 6 0.08
42 6 0.08
43 19 0.26
44 3 0.04
ACGTcount: A:0.45, C:0.10, G:0.21, T:0.24
Consensus pattern (40 bp):
TTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAA
Found at i:6337885 original size:83 final size:83
Alignment explanation
Indices: 6337784--6337950 Score: 334
Period size: 83 Copynumber: 2.0 Consensus size: 83
6337774 TCATTGCCAG
6337784 AGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAGAATTT
1 AGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAGAATTT
6337849 GTTCAACCTTTTGTTCAA
66 GTTCAACCTTTTGTTCAA
6337867 AGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAGAATTT
1 AGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAGAATTT
6337932 GTTCAACCTTTTGTTCAA
66 GTTCAACCTTTTGTTCAA
6337950 A
1 A
6337951 TCCATCACCT
Statistics
Matches: 84, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
83 84 1.00
ACGTcount: A:0.43, C:0.11, G:0.20, T:0.26
Consensus pattern (83 bp):
AGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAGAATTT
GTTCAACCTTTTGTTCAA
Found at i:6338122 original size:308 final size:309
Alignment explanation
Indices: 6337558--6338168 Score: 1003
Period size: 308 Copynumber: 2.0 Consensus size: 309
6337548 ACATTTCCAG
6337558 AGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAGAATTT
1 AGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAGAATTT
* * *
6337623 GTTCAACCTTTTGTTCAAATCCATCATCTGATGGATTATCATTGCCAGAGAAGGTTCATAATGAG
66 GTTCAACCTTTTGTTCAAATCCATCACCTGAGGGATCATCATTGCCAGAGAAGGTTCATAATGAG
* * **
6337688 AAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGTTCA
131 AAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATAAGAAGAATTTATTCAACCTTTTCCTCA
* * *
6337753 AATCCATCATCTGATGGATTATCATTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGA
196 AATCCATCATCTGATGGATCATCATTGCCAGAAAAAGTTCATAATGAGAAGAACTCATCTGAAGA
* *
6337818 AGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGTTCAA
261 AGGAAGAAGAAATTCATAATAAAAAGAATTTGTTCAACCTTTTGTTCAA
*
6337867 AGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAGAATTT
1 AGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAGAATTT
6337932 GTTCAACCTTTTGTTCAAATCCATCACCTGAGGGATCATCATTGCCAGAGAA-GTTCATAATGAG
66 GTTCAACCTTTTGTTCAAATCCATCACCTGAGGGATCATCATTGCCAGAGAAGGTTCATAATGAG
*
6337996 AAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATAAGAAGAATTTATTCAACCTTTTACCT-
131 AAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATAAGAAGAATTTATTCAACCTTTT-CCTC
* * ** *
6338060 GAATTCATCA-CTTGATGGATCATTTTTTCCAGAAAAAGTTCATAATGAGAAGAACTCATCTGAA
195 AAATCCATCATC-TGATGGATCATCATTGCCAGAAAAAGTTCATAATGAGAAGAACTCATCTGAA
*
6338124 GAAGGAAGAAGAAGTTCATAATAAAAAGAATTTGTTCAACCTTTT
259 GAAGGAAGAAGAAATTCATAATAAAAAGAATTTGTTCAACCTTTT
6338169 ACCTGAATTC
Statistics
Matches: 280, Mismatches: 20, Indels: 5
0.92 0.07 0.02
Matches are distributed among these distances:
307 1 0.00
308 165 0.59
309 114 0.41
ACGTcount: A:0.40, C:0.14, G:0.19, T:0.28
Consensus pattern (309 bp):
AGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAGAATTT
GTTCAACCTTTTGTTCAAATCCATCACCTGAGGGATCATCATTGCCAGAGAAGGTTCATAATGAG
AAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATAAGAAGAATTTATTCAACCTTTTCCTCA
AATCCATCATCTGATGGATCATCATTGCCAGAAAAAGTTCATAATGAGAAGAACTCATCTGAAGA
AGGAAGAAGAAATTCATAATAAAAAGAATTTGTTCAACCTTTTGTTCAA
Found at i:6338141 original size:113 final size:113
Alignment explanation
Indices: 6337872--6338571 Score: 1125
Period size: 113 Copynumber: 6.2 Consensus size: 113
6337862 TTCAAAGAAG
*
6337872 GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCA
1 GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCA
** * * * * * * *
6337937 ACCTTTT-GTTCAAATCCATCACCTGAGGGATCATCATTGCCAG-AGAA
66 ACCTTTTACCT-GAATTCATCACTTGATGGATCATCTTTTCCAGAAAAA
* *
6337984 GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATAAGAAGAATTTATTCA
1 GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCA
*
6338049 ACCTTTTACCTGAATTCATCACTTGATGGATCATTTTTTCCAGAAAAA
66 ACCTTTTACCTGAATTCATCACTTGATGGATCATCTTTTCCAGAAAAA
* *
6338097 GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATAAAAAGAATTTGTTCA
1 GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCA
*
6338162 ACCTTTTACCTGAATTCATCACTTGATGGATCATTTTTTCCAGAAAAA
66 ACCTTTTACCTGAATTCATCACTTGATGGATCATCTTTTCCAGAAAAA
*
6338210 GTTCATAATGAGAAGAACTCGTCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCA
1 GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCA
*
6338275 ACCTTTTACCTGAATTCATCATTTGATGGATCATCTTTTCCAGAAAAA
66 ACCTTTTACCTGAATTCATCACTTGATGGATCATCTTTTCCAGAAAAA
*
6338323 GTTCATAATGAGAAGAACTCGTCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCA
1 GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCA
* *
6338388 ACCTTTTACCTGAATTCATCATTTGATGGATCATCTTTTCCAGAGAAA
66 ACCTTTTACCTGAATTCATCACTTGATGGATCATCTTTTCCAGAAAAA
6338436 GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCA
1 GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCA
* * * * ** *
6338501 ACCTTTTACCTGAATTCATCATTTGATGGATCAACATTGCCAGGTAGA
66 ACCTTTTACCTGAATTCATCACTTGATGGATCATCTTTTCCAGAAAAA
6338549 GTTCATAATGAGAAGAACTCATC
1 GTTCATAATGAGAAGAACTCATC
6338572 AAGAGCTTAT
Statistics
Matches: 558, Mismatches: 28, Indels: 3
0.95 0.05 0.01
Matches are distributed among these distances:
112 94 0.17
113 464 0.83
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.29
Consensus pattern (113 bp):
GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCA
ACCTTTTACCTGAATTCATCACTTGATGGATCATCTTTTCCAGAAAAA
Found at i:6338824 original size:3 final size:3
Alignment explanation
Indices: 6338816--6338859 Score: 70
Period size: 3 Copynumber: 14.7 Consensus size: 3
6338806 TTCATTTAAA
* *
6338816 TAT TAT TAT TAT TAT TAT TAT AAT TAT TAT TAT TAT TAT AAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
6338860 CCCGCTTCCA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:6349099 original size:11 final size:12
Alignment explanation
Indices: 6349083--6349111 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
6349073 AATATATATC
6349083 TTTTTTAA-GTT
1 TTTTTTAAGGTT
6349094 TTTTTTAAGGTT
1 TTTTTTAAGGTT
6349106 TTTTTT
1 TTTTTT
6349112 TATGTATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 8 0.47
12 9 0.53
ACGTcount: A:0.14, C:0.00, G:0.10, T:0.76
Consensus pattern (12 bp):
TTTTTTAAGGTT
Found at i:6349549 original size:19 final size:20
Alignment explanation
Indices: 6349525--6349702 Score: 80
Period size: 20 Copynumber: 8.8 Consensus size: 20
6349515 AAATGACCAA
6349525 CAAATTCGCAACGCG-ATCT
1 CAAATTCGCAACGCGAATCT
*
6349544 CAAATTCGCAACGCGAATTT
1 CAAATTCGCAACGCGAATCT
* * * *
6349564 CAATTTCGCAAC-CCAGTTT
1 CAAATTCGCAACGCGAATCT
* *
6349583 CCAATTTCGCAACGCGAATAT
1 -CAAATTCGCAACGCGAATCT
* ** * *
6349604 GTAAA-TCGCATTGCGATTTT
1 -CAAATTCGCAACGCGAATCT
** *
6349624 CCAAATTCG-AGTTGTGATAT-T
1 -CAAATTCGCA-ACGCGA-ATCT
*
6349645 CCAAATTCGCAACGCG-ATAAT
1 -CAAATTCGCAACGCGAAT-CT
* **
6349666 CAAATTCTCAACGCGAAAGT
1 CAAATTCGCAACGCGAATCT
6349686 CAAATTCGCAACGCGAA
1 CAAATTCGCAACGCGAA
6349703 AGTCAAATGT
Statistics
Matches: 124, Mismatches: 25, Indels: 19
0.74 0.15 0.11
Matches are distributed among these distances:
19 22 0.18
20 72 0.58
21 28 0.23
22 2 0.02
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (20 bp):
CAAATTCGCAACGCGAATCT
Found at i:6349571 original size:20 final size:20
Alignment explanation
Indices: 6349529--6349601 Score: 87
Period size: 20 Copynumber: 3.7 Consensus size: 20
6349519 GACCAACAAA
* *
6349529 TTCGCAACGCG-ATCTCAAA
1 TTCGCAACGCGAATTTCAAT
6349548 TTCGCAACGCGAATTTCAAT
1 TTCGCAACGCGAATTTCAAT
* *
6349568 TTCGCAAC-CCAGTTTCCAAT
1 TTCGCAACGCGAATTT-CAAT
6349588 TTCGCAACGCGAAT
1 TTCGCAACGCGAAT
6349602 ATGTAAATCG
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
19 16 0.36
20 26 0.58
21 3 0.07
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.26
Consensus pattern (20 bp):
TTCGCAACGCGAATTTCAAT
Found at i:6349671 original size:20 final size:20
Alignment explanation
Indices: 6349646--6349710 Score: 105
Period size: 20 Copynumber: 3.2 Consensus size: 20
6349636 TGTGATATTC
6349646 CAAATTCGCAACGCGATAA-T
1 CAAATTCGCAACGCGA-AAGT
*
6349666 CAAATTCTCAACGCGAAAGT
1 CAAATTCGCAACGCGAAAGT
6349686 CAAATTCGCAACGCGAAAGT
1 CAAATTCGCAACGCGAAAGT
6349706 CAAAT
1 CAAAT
6349711 GTTTTTACGC
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
19 2 0.05
20 40 0.95
ACGTcount: A:0.42, C:0.25, G:0.15, T:0.18
Consensus pattern (20 bp):
CAAATTCGCAACGCGAAAGT
Found at i:6350188 original size:19 final size:20
Alignment explanation
Indices: 6350152--6350189 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
6350142 CCAAATTCGC
6350152 AACGCGAAAATGAAAATCGT
1 AACGCGAAAATGAAAATCGT
*
6350172 AACGCGAAACT-AAAATCG
1 AACGCGAAAATGAAAATCG
6350190 CGTTGCGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.50, C:0.18, G:0.18, T:0.13
Consensus pattern (20 bp):
AACGCGAAAATGAAAATCGT
Found at i:6350228 original size:20 final size:20
Alignment explanation
Indices: 6350187--6350228 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
6350177 GAAACTAAAA
* * *
6350187 TCGCGTTGCGATTTTCATTT
1 TCGCGTTGCGAATTTAAGTT
6350207 TCGCGTTGCGAATTTAAGTT
1 TCGCGTTGCGAATTTAAGTT
6350227 TC
1 TC
6350229 AGAAACTTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.14, C:0.19, G:0.21, T:0.45
Consensus pattern (20 bp):
TCGCGTTGCGAATTTAAGTT
Found at i:6351430 original size:21 final size:21
Alignment explanation
Indices: 6351406--6351455 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
6351396 TGGTGCATGG
6351406 CGTGATGAGGTTCGA-TCTTTA
1 CGTGATGAGG-TCGATTCTTTA
* * *
6351427 CGTGGTGAGGTGGATTTTTTA
1 CGTGATGAGGTCGATTCTTTA
6351448 CGTGATGA
1 CGTGATGA
6351456 CAATGGTGCG
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
20 3 0.12
21 21 0.88
ACGTcount: A:0.18, C:0.10, G:0.34, T:0.38
Consensus pattern (21 bp):
CGTGATGAGGTCGATTCTTTA
Found at i:6351816 original size:21 final size:21
Alignment explanation
Indices: 6351790--6351845 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
6351780 TAAGCCCGAT
6351790 GCACCTATCATCATTCAAGAG
1 GCACCTATCATCATTCAAGAG
* *
6351811 GCACCT-CCTATCGTTCAAGAG
1 GCACCTATC-ATCATTCAAGAG
*
6351832 GCCCCTATCATCAT
1 GCACCTATCATCAT
6351846 CGAAGAATCC
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
20 1 0.04
21 26 0.93
22 1 0.04
ACGTcount: A:0.27, C:0.34, G:0.14, T:0.25
Consensus pattern (21 bp):
GCACCTATCATCATTCAAGAG
Found at i:6351840 original size:42 final size:42
Alignment explanation
Indices: 6351793--6351892 Score: 112
Period size: 42 Copynumber: 2.4 Consensus size: 42
6351783 GCCCGATGCA
* * *
6351793 CCTATCATCATTCAAGAGGCACCTCCTATCGTTCAAGAGGCC
1 CCTATCATCATTCAAGAAGCACCTCCCACCGTTCAAGAGGCC
* *
6351835 CCTATCATCA-TCGAAGAATCCCCTCCCACCGTTCAAGAGGCC
1 CCTATCATCATTC-AAGAAGCACCTCCCACCGTTCAAGAGGCC
* * *
6351877 ACTGTCATCGTTCAAG
1 CCTATCATCATTCAAG
6351893 TGGTCCCGCC
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
41 2 0.04
42 44 0.92
43 2 0.04
ACGTcount: A:0.26, C:0.35, G:0.16, T:0.23
Consensus pattern (42 bp):
CCTATCATCATTCAAGAAGCACCTCCCACCGTTCAAGAGGCC
Found at i:6353335 original size:14 final size:14
Alignment explanation
Indices: 6353316--6353355 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
6353306 TTTTGATTAA
6353316 TTGATTTGTAAAAG
1 TTGATTTGTAAAAG
** *
6353330 TTGATTTGTTTAAT
1 TTGATTTGTAAAAG
6353344 TTGATTTGTAAA
1 TTGATTTGTAAA
6353356 TAAGAATTAT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.30, C:0.00, G:0.17, T:0.53
Consensus pattern (14 bp):
TTGATTTGTAAAAG
Found at i:6353348 original size:61 final size:65
Alignment explanation
Indices: 6353265--6353404 Score: 173
Period size: 65 Copynumber: 2.2 Consensus size: 65
6353255 TTTTACATTG
*
6353265 AAAGTTGATTTG-TTACAATTGATGAGGAAATAAG-ATT-TATTTT-TTGATTAATTGATTTGTA
1 AAAGTTGATTTGTTTACAATTGATGAGGAAATAAGAATTATATTTTCTTGATTAATTGATTTATA
* ** * * *
6353326 AAAGTTGATTTGTTTA-ATTTGATTTGTAAATAAGAATTATTTTTTGCTTGTTTAATTGATTTAT
1 AAAGTTGATTTGTTTACAATTGATGAGGAAATAAGAATTATATTTT-CTTGATTAATTGATTTAT
6353390 A
65 A
6353391 AAAGTTGATTTGTT
1 AAAGTTGATTTGTT
6353405 GTTTCTAAAA
Statistics
Matches: 67, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
61 26 0.39
62 6 0.09
63 5 0.07
65 30 0.45
ACGTcount: A:0.32, C:0.01, G:0.16, T:0.50
Consensus pattern (65 bp):
AAAGTTGATTTGTTTACAATTGATGAGGAAATAAGAATTATATTTTCTTGATTAATTGATTTATA
Found at i:6353489 original size:20 final size:20
Alignment explanation
Indices: 6353463--6353510 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
6353453 GTTGAAGGTA
6353463 CAAATTCGCAACACGAAAGT
1 CAAATTCGCAACACGAAAGT
*
6353483 TAAATTCGCAACACGAAAGT
1 CAAATTCGCAACACGAAAGT
6353503 CAAATTCG
1 CAAATTCG
6353511 GAACGCGATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.44, C:0.23, G:0.15, T:0.19
Consensus pattern (20 bp):
CAAATTCGCAACACGAAAGT
Found at i:6353760 original size:39 final size:39
Alignment explanation
Indices: 6353706--6353792 Score: 165
Period size: 39 Copynumber: 2.2 Consensus size: 39
6353696 TCAAGTTGTA
6353706 GATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTG
1 GATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTG
*
6353745 GATTTTGATTTCCTTTTGCTTGGCACCATATGAGCTTTG
1 GATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTG
6353784 GATTTTGAT
1 GATTTTGAT
6353793 GAGCATCGGA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 47 1.00
ACGTcount: A:0.17, C:0.15, G:0.21, T:0.47
Consensus pattern (39 bp):
GATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTG
Found at i:6354084 original size:18 final size:18
Alignment explanation
Indices: 6354061--6354097 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
6354051 CAAAATTTAT
6354061 ATTGAAATTCAAACTCAA
1 ATTGAAATTCAAACTCAA
* *
6354079 ATTGAAATTTAAATTCAA
1 ATTGAAATTCAAACTCAA
6354097 A
1 A
6354098 CTCCAATTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.51, C:0.11, G:0.05, T:0.32
Consensus pattern (18 bp):
ATTGAAATTCAAACTCAA
Found at i:6354518 original size:25 final size:25
Alignment explanation
Indices: 6354484--6354533 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
6354474 ATTATTTTTC
*
6354484 CAAATAATGTACCCATAACAATGTT
1 CAAATAATGTACCCACAACAATGTT
*
6354509 CAAATAATGTACCTACAACAATGTT
1 CAAATAATGTACCCACAACAATGTT
6354534 TAATTGATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.44, C:0.20, G:0.08, T:0.28
Consensus pattern (25 bp):
CAAATAATGTACCCACAACAATGTT
Found at i:6354652 original size:20 final size:20
Alignment explanation
Indices: 6354629--6354685 Score: 87
Period size: 20 Copynumber: 2.9 Consensus size: 20
6354619 GCGTTGTGAT
6354629 AGTCAAATTCGCAACGCGAA
1 AGTCAAATTCGCAACGCGAA
* *
6354649 AGTCAAATTCGCTACGCGAT
1 AGTCAAATTCGCAACGCGAA
*
6354669 AGTTAAATTCGCAACGC
1 AGTCAAATTCGCAACGC
6354686 TTATTTTGCG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.35, C:0.25, G:0.19, T:0.21
Consensus pattern (20 bp):
AGTCAAATTCGCAACGCGAA
Found at i:6355027 original size:18 final size:18
Alignment explanation
Indices: 6355004--6355039 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
6354994 AAGCCGGTTG
* *
6355004 TGATTGGGATTTTGATTT
1 TGATTGCGAATTTGATTT
6355022 TGATTGCGAATTTGATTT
1 TGATTGCGAATTTGATTT
6355040 CCTTTTGCTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.19, C:0.03, G:0.25, T:0.53
Consensus pattern (18 bp):
TGATTGCGAATTTGATTT
Found at i:6357494 original size:12 final size:12
Alignment explanation
Indices: 6357478--6357517 Score: 62
Period size: 12 Copynumber: 3.3 Consensus size: 12
6357468 GTTGTGAAGT
*
6357478 TTTGAGATTGTT
1 TTTGAGATTGTG
6357490 TTTGAGATTGTG
1 TTTGAGATTGTG
*
6357502 TTTGATATTGTG
1 TTTGAGATTGTG
6357514 TTTG
1 TTTG
6357518 GTATTGAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.15, C:0.00, G:0.28, T:0.57
Consensus pattern (12 bp):
TTTGAGATTGTG
Found at i:6357522 original size:12 final size:12
Alignment explanation
Indices: 6357478--6357523 Score: 56
Period size: 12 Copynumber: 3.8 Consensus size: 12
6357468 GTTGTGAAGT
* *
6357478 TTTGAGATTGTT
1 TTTGATATTGTG
*
6357490 TTTGAGATTGTG
1 TTTGATATTGTG
6357502 TTTGATATTGTG
1 TTTGATATTGTG
*
6357514 TTTGGTATTG
1 TTTGATATTG
6357524 AAAATATGGT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.15, C:0.00, G:0.28, T:0.57
Consensus pattern (12 bp):
TTTGATATTGTG
Found at i:6358304 original size:20 final size:20
Alignment explanation
Indices: 6358268--6358418 Score: 103
Period size: 20 Copynumber: 7.6 Consensus size: 20
6358258 ACTAAAACCT
*
6358268 GTTGCGAAATT-AAATTCGC
1 GTTGCGAATTTGAAATTCGC
* *
6358287 GTTGCAAATTTGAAATTC-A
1 GTTGCGAATTTGAAATTCGC
* *
6358306 ATTGCGAATTT-AACTTTCGC
1 GTTGCGAATTTGAA-ATTCGC
* *
6358326 GTTGAGAATTTG-ACTATCGC
1 GTTGCGAATTTGAAAT-TCGC
*
6358346 GTTGCGAATTTGGAAAATCGC
1 GTTGCGAATTT-GAAATTCGC
*** ** *
6358367 AACGCGAATTACATATTCGC
1 GTTGCGAATTTGAAATTCGC
* *
6358387 GTTGCGAAATTGGAATTCGC
1 GTTGCGAATTTGAAATTCGC
6358407 GTTGCGAATTTG
1 GTTGCGAATTTG
6358419 TTGATCATTT
Statistics
Matches: 96, Mismatches: 29, Indels: 13
0.70 0.21 0.09
Matches are distributed among these distances:
18 2 0.02
19 22 0.23
20 59 0.61
21 12 0.12
22 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (20 bp):
GTTGCGAATTTGAAATTCGC
Found at i:6358563 original size:306 final size:311
Alignment explanation
Indices: 6358180--6358810 Score: 1013
Period size: 306 Copynumber: 2.0 Consensus size: 311
6358170 ATAGAGATGA
6358180 ATGAGTTGCGATTTAGGGATTTAGGTTATAAGTTGTTGCTGCTGCGTTGTTATATACCCAAAACA
1 ATGAGTTGCGATTTAGGGATTTAGGTTATAAGTTGTTGCTGCTGCGTTGTTATATACCCAAAACA
*
6358245 TTTGTGTTGCGAAACTAAAACCTGTTGCGAAATTAAATTCGCGTTGCAAATTTGAAATTCAATTG
66 TTTGTGTTGCGAAACTAAAACCTGTTGCGAAATTAAATTCGCGTTGCAAATTTGAAATTCAATTA
6358310 CGAATTTAACTTTCGCGTTGAGAATTTGACTAT-C-GC-G-T-T-GCGAATTTGGAAAATCGCAA
131 CGAATTTAACTTTCGCGTTGAGAATTTGACTATACTGCTGATATCGCGAATTTGGAAAATCGCAA
6358369 CGCGAATTACATATTCGCGTTGCGAAATTGGAATTCGCGTTGCGAATTTGTTGATCATTTTGGCA
196 CGCGAATTACATATTCGCGTTGCGAAATTGGAATTCGCGTTGCGAATTTGTTGATCATTTTGGCA
6358434 AATCCAAAAAAAAATTGATTAAATTCGTATATTATAAGGCATTTTTTGTCAT
261 AATCC-AAAAAAAATTGATTAAATTCGTATATTATAAGGCATTTTTTGTCAT
*
6358486 ATGAGTTGCGATTTAGGGATTTAGGTTATGAGTTGTTGCTGCTGCGTTGTTATATACCCAAAACA
1 ATGAGTTGCGATTTAGGGATTTAGGTTATAAGTTGTTGCTGCTGCGTTGTTATATACCCAAAACA
*
6358551 TTTGTGTTGCGAAACTAAAACCTGTTGCGAAATTAAATTCGCGTTGCGAATTTGAAATTCAATTA
66 TTTGTGTTGCGAAACTAAAACCTGTTGCGAAATTAAATTCGCGTTGCAAATTTGAAATTCAATTA
*
6358616 CGAATTTGACTTTCGCGTTGAGAATTTGACTATCACGTTGCGAATTTGGAATATCGCAACGCGAA
131 CGAATTTAACTTTCGCGTTGAGAATTTGACTAT-AC--TGC-----T-G-ATAT-----CGCGAA
*
6358681 TTTGGAAAATCGCAACGTGAATTACATATTCGCGTTGCGAAATTGGAATTCGCGTTGCGAATTTG
181 TTTGGAAAATCGCAACGCGAATTACATATTCGCGTTGCGAAATTGGAATTCGCGTTGCGAATTTG
* *
6358746 TTGGTCATTTTGGCAAATCCAAAAAAATTTGATTAAATTCGTATATTATAAGGCATTTTTTGTCA
246 TTGATCATTTTGGCAAATCCAAAAAAAATTGATTAAATTCGTATATTATAAGGCATTTTTTGTCA
6358811 CTTAGATTAT
Statistics
Matches: 297, Mismatches: 7, Indels: 22
0.91 0.02 0.07
Matches are distributed among these distances:
306 159 0.54
308 1 0.00
311 2 0.01
318 1 0.00
320 1 0.00
321 1 0.00
326 44 0.15
327 88 0.30
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (311 bp):
ATGAGTTGCGATTTAGGGATTTAGGTTATAAGTTGTTGCTGCTGCGTTGTTATATACCCAAAACA
TTTGTGTTGCGAAACTAAAACCTGTTGCGAAATTAAATTCGCGTTGCAAATTTGAAATTCAATTA
CGAATTTAACTTTCGCGTTGAGAATTTGACTATACTGCTGATATCGCGAATTTGGAAAATCGCAA
CGCGAATTACATATTCGCGTTGCGAAATTGGAATTCGCGTTGCGAATTTGTTGATCATTTTGGCA
AATCCAAAAAAAATTGATTAAATTCGTATATTATAAGGCATTTTTTGTCAT
Found at i:6358610 original size:20 final size:20
Alignment explanation
Indices: 6358574--6358745 Score: 89
Period size: 20 Copynumber: 8.6 Consensus size: 20
6358564 ACTAAAACCT
*
6358574 GTTGCGAAATT-AAATTCGC
1 GTTGCGAATTTGAAATTCGC
*
6358593 GTTGCGAATTTGAAATTC-A
1 GTTGCGAATTTGAAATTCGC
* * **
6358612 ATTACGAATTTGACTTTCGC
1 GTTGCGAATTTGAAATTCGC
* * *
6358632 GTTGAGAATTTG-ACTATCAC
1 GTTGCGAATTTGAAAT-TCGC
*
6358652 GTTGCGAATTTGGAATATCGC
1 GTTGCGAATTTGAAAT-TCGC
*** *
6358673 AACGCGAATTTGGAAAATCGC
1 GTTGCGAATTT-GAAATTCGC
*** * ** *
6358694 AACGTGAATTACATATTCGC
1 GTTGCGAATTTGAAATTCGC
* *
6358714 GTTGCGAAATTGGAATTCGC
1 GTTGCGAATTTGAAATTCGC
6358734 GTTGCGAATTTG
1 GTTGCGAATTTG
6358746 TTGGTCATTT
Statistics
Matches: 112, Mismatches: 36, Indels: 9
0.71 0.23 0.06
Matches are distributed among these distances:
19 25 0.22
20 57 0.51
21 27 0.24
22 3 0.03
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.33
Consensus pattern (20 bp):
GTTGCGAATTTGAAATTCGC
Found at i:6358679 original size:21 final size:21
Alignment explanation
Indices: 6358655--6358703 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
6358645 CTATCACGTT
*
6358655 GCGAATTTGGAATATCGCAAC
1 GCGAATTTGGAAAATCGCAAC
6358676 GCGAATTTGGAAAATCGCAAC
1 GCGAATTTGGAAAATCGCAAC
*
6358697 GTGAATT
1 GCGAATT
6358704 ACATATTCGC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.24
Consensus pattern (21 bp):
GCGAATTTGGAAAATCGCAAC
Found at i:6358868 original size:2 final size:2
Alignment explanation
Indices: 6358850--6358883 Score: 50
Period size: 2 Copynumber: 16.5 Consensus size: 2
6358840 ATTCTCCTTC
*
6358850 AT AT TT AT AT CAT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT -AT AT AT AT AT AT AT AT AT AT AT A
6358884 AGGGATTTCT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
2 27 0.93
3 2 0.07
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6360669 original size:31 final size:29
Alignment explanation
Indices: 6360634--6360691 Score: 80
Period size: 31 Copynumber: 1.9 Consensus size: 29
6360624 AAACTACACG
*
6360634 TTTAGTATTTAAACTATCAGTTTTGTTTCGT
1 TTTAGTATCTAAACTATCA--TTTGTTTCGT
*
6360665 TTTAGTATCTAAACTTTCATTTGTTTC
1 TTTAGTATCTAAACTATCATTTGTTTC
6360692 AAAATCATAC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 8 0.32
31 17 0.68
ACGTcount: A:0.22, C:0.12, G:0.10, T:0.55
Consensus pattern (29 bp):
TTTAGTATCTAAACTATCATTTGTTTCGT
Found at i:6360891 original size:16 final size:16
Alignment explanation
Indices: 6360841--6360892 Score: 56
Period size: 16 Copynumber: 3.3 Consensus size: 16
6360831 ATTTTTTTAA
6360841 TTTAATTACT-TAACT
1 TTTAATTACTCTAACT
*
6360856 TTCAATTTACTTCTAA--
1 TTTAA-TTAC-TCTAACT
6360872 TTTAATTACTCTAACT
1 TTTAATTACTCTAACT
6360888 TTTAA
1 TTTAA
6360893 ATTTATTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
14 5 0.17
15 8 0.27
16 13 0.43
17 1 0.03
18 3 0.10
ACGTcount: A:0.33, C:0.15, G:0.00, T:0.52
Consensus pattern (16 bp):
TTTAATTACTCTAACT
Found at i:6361210 original size:230 final size:234
Alignment explanation
Indices: 6360797--6361257 Score: 804
Period size: 230 Copynumber: 2.0 Consensus size: 234
6360787 AATTACATCT
* *
6360797 ATCTTCTCATTCCTAATTTAGTCATTGATGTTTAATTTTTTTAATTTAATTACTTAACTTTCAAT
1 ATCTTCTCATTCCTAATTTAGTCATTGATGTTTAATTTTTTAAATTTAATTACTTAACTTTCAAA
* * *
6360862 TTACTTCTAATTTAATTACTCTAACTTTTAAATTTATTTTTTATTTTAATTATATATTAATAAAA
66 TTACTCCTAATTTAATCACTCTAACTTTTAAATTTATTTTTTATTTTAATTACATATTAATAAAA
* *
6360927 TAATAAAAATATCATGTCATAAAAATTATTAATAAAATAAATTAGAGTGATTATAACATGAGAGT
131 TAATAAAAATATCAAGTCATAAAAATTATTAATAAAATAAATTAGAATGATTATAACATGAGAGT
6360992 TGAGTAGTTAAATTGAAAATTTTTAAACTTTAGTGAGCA
196 TGAGTAGTTAAATTGAAAATTTTTAAACTTTAGTGAGCA
6361031 ATCTTCTCATTCCTAATTTAGTCATTGATGTTTAA-TTTTTAAATTTAATTACTTAACTTTCAAA
1 ATCTTCTCATTCCTAATTTAGTCATTGATGTTTAATTTTTTAAATTTAATTACTTAACTTTCAAA
*
6361095 TTACTCCTAATTTAATCACTCTAAC-TTTCAA-TT-TTTTTTATTTTAATTACATATTAATAAAA
66 TTACTCCTAATTTAATCACTCTAACTTTTAAATTTATTTTTTATTTTAATTACATATTAATAAAA
6361157 TAATAAAAATATCAAGTCATAAAAATTATTAATAAAATAAATTAGAATGATTATAACATGAGAGT
131 TAATAAAAATATCAAGTCATAAAAATTATTAATAAAATAAATTAGAATGATTATAACATGAGAGT
* *
6361222 TGAGTAGTTCAATTGAAATTTTTTAAACTTTAGTGA
196 TGAGTAGTTAAATTGAAAATTTTTAAACTTTAGTGA
6361258 TTAAAAAAGG
Statistics
Matches: 217, Mismatches: 10, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
230 125 0.58
231 2 0.01
232 5 0.02
233 50 0.23
234 35 0.16
ACGTcount: A:0.39, C:0.09, G:0.07, T:0.45
Consensus pattern (234 bp):
ATCTTCTCATTCCTAATTTAGTCATTGATGTTTAATTTTTTAAATTTAATTACTTAACTTTCAAA
TTACTCCTAATTTAATCACTCTAACTTTTAAATTTATTTTTTATTTTAATTACATATTAATAAAA
TAATAAAAATATCAAGTCATAAAAATTATTAATAAAATAAATTAGAATGATTATAACATGAGAGT
TGAGTAGTTAAATTGAAAATTTTTAAACTTTAGTGAGCA
Found at i:6361456 original size:82 final size:82
Alignment explanation
Indices: 6361357--6361512 Score: 222
Period size: 82 Copynumber: 1.9 Consensus size: 82
6361347 GACAGTGCAT
* * ** ** * *
6361357 TAAAATGAAACAAAAAGTAAATGTTAGGTATGATTTTGAAGTAAATGGGAGTTTAGGTTCTAAAA
1 TAAAATGAAACAAAAAGTAAACGCTAGGTATGATTTTGAAAAAAATAAGAGTTAAGGTACTAAAA
*
6361422 CGAAACAAAGCTAATAG
66 CAAAACAAAGCTAATAG
*
6361439 TAAAATGAAACAAAAAGTAAACGCTAGGTATGCTTTTGAAAAAAATAAGAGTTAAGGTACTAAAA
1 TAAAATGAAACAAAAAGTAAACGCTAGGTATGATTTTGAAAAAAATAAGAGTTAAGGTACTAAAA
6361504 CAAAACAAA
66 CAAAACAAA
6361513 ACTGATTGTT
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
82 64 1.00
ACGTcount: A:0.51, C:0.08, G:0.18, T:0.24
Consensus pattern (82 bp):
TAAAATGAAACAAAAAGTAAACGCTAGGTATGATTTTGAAAAAAATAAGAGTTAAGGTACTAAAA
CAAAACAAAGCTAATAG
Found at i:6367542 original size:2 final size:2
Alignment explanation
Indices: 6367535--6367563 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
6367525 TGACCCAACA
6367535 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
6367564 ATTCTTATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:6368058 original size:2 final size:2
Alignment explanation
Indices: 6368046--6368077 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
6368036 ATAAAATTTA
*
6368046 AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6368078 CCTAATTTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6368896 original size:108 final size:108
Alignment explanation
Indices: 6368755--6368970 Score: 405
Period size: 108 Copynumber: 2.0 Consensus size: 108
6368745 AAACTTGAAA
* *
6368755 ATCGATGTCAATATTGTTACATGTTGGTCTAAATGATGTCATATTTCTTCTCACACCATTGGTTC
1 ATCGATGTCAATATTGTTACATGTTAGTCTAAATGATGGCATATTTCTTCTCACACCATTGGTTC
*
6368820 GAATTCCTTTCTCTATCATCTTGTTTTCTTCCATTTATTTGTC
66 GAATTCCTTTCTCTATCATCTTATTTTCTTCCATTTATTTGTC
6368863 ATCGATGTCAATATTGTTACATGTTAGTCTAAATGATGGCATATTTCTTCTCACACCATTGGTTC
1 ATCGATGTCAATATTGTTACATGTTAGTCTAAATGATGGCATATTTCTTCTCACACCATTGGTTC
6368928 GAATTCCTTTCTCTATCATCTTATTTTCTTCCATTTATTTGTC
66 GAATTCCTTTCTCTATCATCTTATTTTCTTCCATTTATTTGTC
6368971 TATTATGGAG
Statistics
Matches: 105, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
108 105 1.00
ACGTcount: A:0.21, C:0.20, G:0.12, T:0.47
Consensus pattern (108 bp):
ATCGATGTCAATATTGTTACATGTTAGTCTAAATGATGGCATATTTCTTCTCACACCATTGGTTC
GAATTCCTTTCTCTATCATCTTATTTTCTTCCATTTATTTGTC
Found at i:6376311 original size:36 final size:36
Alignment explanation
Indices: 6376262--6376364 Score: 161
Period size: 36 Copynumber: 2.9 Consensus size: 36
6376252 ACGTTGCTGG
* * *
6376262 ACATTGATACACGAATGTACTAAAGATGATATGATT
1 ACATTGATACACGAATGTACCAAAGCTGATATGATA
* *
6376298 ATATTGATACACGAATATACCAAAGCTGATATGATA
1 ACATTGATACACGAATGTACCAAAGCTGATATGATA
6376334 ACATTGATACACGAATGTACCAAAGCTGATA
1 ACATTGATACACGAATGTACCAAAGCTGATA
6376365 ATACTCAACT
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 60 1.00
ACGTcount: A:0.43, C:0.15, G:0.16, T:0.27
Consensus pattern (36 bp):
ACATTGATACACGAATGTACCAAAGCTGATATGATA
Found at i:6384853 original size:24 final size:24
Alignment explanation
Indices: 6384826--6384881 Score: 94
Period size: 24 Copynumber: 2.3 Consensus size: 24
6384816 ATTAAATTAT
6384826 AATAATTACTAATAATGATTTAAA
1 AATAATTACTAATAATGATTTAAA
* *
6384850 AATAATTACTAATAATTATTTAAT
1 AATAATTACTAATAATGATTTAAA
6384874 AATAATTA
1 AATAATTA
6384882 AATATTTAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.54, C:0.04, G:0.02, T:0.41
Consensus pattern (24 bp):
AATAATTACTAATAATGATTTAAA
Found at i:6385148 original size:13 final size:13
Alignment explanation
Indices: 6385130--6385171 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
6385120 AAATTAAATT
6385130 ATAATAATTACTA
1 ATAATAATTACTA
6385143 ATAATAATT--TA
1 ATAATAATTACTA
* *
6385154 AAAATGATTACTA
1 ATAATAATTACTA
6385167 ATAAT
1 ATAAT
6385172 TATTTAATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
11 9 0.38
13 15 0.62
ACGTcount: A:0.55, C:0.05, G:0.02, T:0.38
Consensus pattern (13 bp):
ATAATAATTACTA
Found at i:6385164 original size:24 final size:24
Alignment explanation
Indices: 6385136--6385187 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
6385126 AATTATAATA
6385136 ATTACTAATAATAATTTAAAAATG
1 ATTACTAATAATAATTTAAAAATG
* *
6385160 ATTACTAATAATTATTTAATAATG
1 ATTACTAATAATAATTTAAAAATG
6385184 ATTA
1 ATTA
6385188 AATATTTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.42
Consensus pattern (24 bp):
ATTACTAATAATAATTTAAAAATG
Found at i:6385259 original size:16 final size:16
Alignment explanation
Indices: 6385218--6385260 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
6385208 TCAATTTAAA
6385218 TCGAATTTATAAATAG
1 TCGAATTTATAAATAG
* *
6385234 TTGAACTTATAACA-AG
1 TCGAATTTATAA-ATAG
6385250 TCGAATTTATA
1 TCGAATTTATA
6385261 TTTATAAATA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
16 21 0.95
17 1 0.05
ACGTcount: A:0.42, C:0.09, G:0.12, T:0.37
Consensus pattern (16 bp):
TCGAATTTATAAATAG
Found at i:6385874 original size:7 final size:7
Alignment explanation
Indices: 6385862--6385913 Score: 77
Period size: 7 Copynumber: 7.4 Consensus size: 7
6385852 CATTATGATA
6385862 AAACCCT
1 AAACCCT
6385869 AAACCCT
1 AAACCCT
6385876 AAACCCT
1 AAACCCT
6385883 AAACCCT
1 AAACCCT
*
6385890 AAATCCT
1 AAACCCT
*
6385897 AAACACT
1 AAACCCT
*
6385904 AAACACT
1 AAACCCT
6385911 AAA
1 AAA
6385914 TCATTATAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 42 1.00
ACGTcount: A:0.50, C:0.35, G:0.00, T:0.15
Consensus pattern (7 bp):
AAACCCT
Done.