Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001547.1 Hibiscus syriacus cultivar Beakdansim tig00003041_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10425128
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 36 of 51
Found at i:7010723 original size:18 final size:18
Alignment explanation
Indices: 7010702--7010767 Score: 55
Period size: 18 Copynumber: 3.6 Consensus size: 18
7010692 ATAATATAAA
7010702 TTAAACAAAATATATTTT
1 TTAAACAAAATATATTTT
* *
7010720 TTAAA-AACACTAAATATTT
1 TTAAACAA-AATATAT-TTT
* *
7010739 TCAAACACAATAT-TTTT
1 TTAAACAAAATATATTTT
7010756 TTAAACAGAAAT
1 TTAAACA-AAAT
7010768 TATCTCGCAC
Statistics
Matches: 36, Mismatches: 8, Indels: 8
0.69 0.15 0.15
Matches are distributed among these distances:
17 11 0.31
18 14 0.39
19 10 0.28
20 1 0.03
ACGTcount: A:0.50, C:0.11, G:0.02, T:0.38
Consensus pattern (18 bp):
TTAAACAAAATATATTTT
Found at i:7010756 original size:17 final size:18
Alignment explanation
Indices: 7010713--7010762 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
7010703 TAAACAAAAT
7010713 ATATTTTTTAAAAACACTA
1 ATATTTTTT-AAAACACTA
* *
7010732 A-ATATTTTCAAACAC-A
1 ATATTTTTTAAAACACTA
*
7010748 ATATTTTTTTAAACA
1 ATATTTTTTAAAACA
7010763 GAAATTATCT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
16 2 0.08
17 17 0.65
18 6 0.23
19 1 0.04
ACGTcount: A:0.46, C:0.12, G:0.00, T:0.42
Consensus pattern (18 bp):
ATATTTTTTAAAACACTA
Found at i:7011215 original size:44 final size:49
Alignment explanation
Indices: 7011160--7011256 Score: 132
Period size: 50 Copynumber: 2.1 Consensus size: 49
7011150 GATACTAACA
*
7011160 AATTAATTAATTTTTT-TAT-AT-T-TA-ATAACTTAAACTAAAAAACT
1 AATTAACTAATTTTTTATATAATATATATATAACTTAAACTAAAAAACT
*
7011204 AATTAACTAATTTTTTATATAATATAATATATAACTTAAACTAACAAACT
1 AATTAACTAATTTTTTATATAATAT-ATATATAACTTAAACTAAAAAACT
7011254 AAT
1 AAT
7011257 ATAATATAAC
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
44 15 0.33
45 3 0.07
46 2 0.04
47 1 0.02
49 2 0.04
50 22 0.49
ACGTcount: A:0.49, C:0.08, G:0.00, T:0.42
Consensus pattern (49 bp):
AATTAACTAATTTTTTATATAATATATATATAACTTAAACTAAAAAACT
Found at i:7011263 original size:28 final size:28
Alignment explanation
Indices: 7011223--7011340 Score: 200
Period size: 28 Copynumber: 4.1 Consensus size: 28
7011213 ATTTTTTATA
7011223 TAATATAATATATAACTTAAACTAACAAAC
1 TAATAT-A-ATATAACTTAAACTAACAAAC
*
7011253 TAATATAATATAACTTAAACTATCAAAC
1 TAATATAATATAACTTAAACTAACAAAC
*
7011281 TAATATAATATAACTTAAACTAACAAAT
1 TAATATAATATAACTTAAACTAACAAAC
7011309 TAATATAATATAACTTAAACTAACAAAC
1 TAATATAATATAACTTAAACTAACAAAC
7011337 TAAT
1 TAAT
7011341 TAACTAAATT
Statistics
Matches: 84, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
28 77 0.92
29 1 0.01
30 6 0.07
ACGTcount: A:0.56, C:0.13, G:0.00, T:0.31
Consensus pattern (28 bp):
TAATATAATATAACTTAAACTAACAAAC
Found at i:7011616 original size:22 final size:23
Alignment explanation
Indices: 7011591--7011640 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
7011581 AATTTGACTG
7011591 TTGAAGCAAATAA-TATTGAGCA
1 TTGAAGCAAATAACTATTGAGCA
* ***
7011613 TTGAATCGTGTAACTATTGAGCA
1 TTGAAGCAAATAACTATTGAGCA
7011636 TTGAA
1 TTGAA
7011641 AGGCTGCAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
22 9 0.39
23 14 0.61
ACGTcount: A:0.38, C:0.10, G:0.20, T:0.32
Consensus pattern (23 bp):
TTGAAGCAAATAACTATTGAGCA
Found at i:7011796 original size:20 final size:20
Alignment explanation
Indices: 7011767--7011819 Score: 63
Period size: 23 Copynumber: 2.5 Consensus size: 20
7011757 AGAGGGTTAA
*
7011767 AGCT-TGGATGTAATCTCCC
1 AGCTATGGATGGAATCTCCC
7011786 AGCTATGGATGCAGGAATCTCCC
1 AGCTATGGAT---GGAATCTCCC
7011809 AGCTATGGATG
1 AGCTATGGATG
7011820 CAACGCATGC
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
19 4 0.14
20 6 0.21
23 19 0.66
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (20 bp):
AGCTATGGATGGAATCTCCC
Found at i:7011806 original size:23 final size:23
Alignment explanation
Indices: 7011778--7011821 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
7011768 GCTTGGATGT
7011778 AATCTCCCAGCTATGGATGCAGG
1 AATCTCCCAGCTATGGATGCAGG
7011801 AATCTCCCAGCTATGGATGCA
1 AATCTCCCAGCTATGGATGCA
7011822 ACGCATGCAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (23 bp):
AATCTCCCAGCTATGGATGCAGG
Found at i:7014652 original size:7 final size:8
Alignment explanation
Indices: 7014632--7014658 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
7014622 TTTTTTCATT
7014632 GAAAAACC
1 GAAAAACC
7014640 GAAAAACC
1 GAAAAACC
7014648 GAAAAACC
1 GAAAAACC
7014656 GAA
1 GAA
7014659 CCGAACCGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.63, C:0.22, G:0.15, T:0.00
Consensus pattern (8 bp):
GAAAAACC
Found at i:7016119 original size:29 final size:28
Alignment explanation
Indices: 7016077--7016155 Score: 122
Period size: 29 Copynumber: 2.7 Consensus size: 28
7016067 AGTTTGAAAT
7016077 TAAAATTTTAAATTTTTTTAATATTTAAG
1 TAAAATTTT-AATTTTTTTAATATTTAAG
7016106 TAAAATTTTGAATTTTTTTAATATTTAAG
1 TAAAATTTT-AATTTTTTTAATATTTAAG
*
7016135 AAAAATTTTAATTTTTGTTAA
1 TAAAATTTTAATTTTT-TTAA
7016156 AACATTATAA
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
28 7 0.15
29 40 0.85
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (28 bp):
TAAAATTTTAATTTTTTTAATATTTAAG
Found at i:7016432 original size:15 final size:15
Alignment explanation
Indices: 7016406--7016449 Score: 70
Period size: 15 Copynumber: 2.9 Consensus size: 15
7016396 GGGAATAAAA
7016406 GATTACATGGGAATAG
1 GATTA-ATGGGAATAG
7016422 GATTAATGGGAATAG
1 GATTAATGGGAATAG
*
7016437 GATTACTGGGAAT
1 GATTAATGGGAAT
7016450 GTTGTATTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
15 22 0.81
16 5 0.19
ACGTcount: A:0.36, C:0.05, G:0.32, T:0.27
Consensus pattern (15 bp):
GATTAATGGGAATAG
Found at i:7017942 original size:21 final size:21
Alignment explanation
Indices: 7017902--7017942 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
7017892 TATCACATAA
*
7017902 TAATTTTATATTTTAATATCT
1 TAATTTTATATTTGAATATCT
*
7017923 TAATTTTATATTTGATTATC
1 TAATTTTATATTTGAATATC
7017943 ACATAATAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.61
Consensus pattern (21 bp):
TAATTTTATATTTGAATATCT
Found at i:7018153 original size:50 final size:51
Alignment explanation
Indices: 7018051--7018176 Score: 173
Period size: 51 Copynumber: 2.5 Consensus size: 51
7018041 TAGCAGTAAA
** *
7018051 GCGCACCCCTGCACCGCGCTATACGATAATTTGGCGCCACGTGGGGTATAGC
1 GCGC-CCCCTGCACCGCGCTATACGATAAGCTGGAGCCACGTGGGGTATAGC
* *
7018103 GCGCCCCCTGAACCGCGCTATACGGTAAGCTGGAGCCACGT-GGGTATAGC
1 GCGCCCCCTGCACCGCGCTATACGATAAGCTGGAGCCACGTGGGGTATAGC
* *
7018153 GCGGCCCCTGCAGCGCGCTATACG
1 GCGCCCCCTGCACCGCGCTATACG
7018177 CCACGTAGGT
Statistics
Matches: 66, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
50 30 0.45
51 32 0.48
52 4 0.06
ACGTcount: A:0.18, C:0.34, G:0.31, T:0.17
Consensus pattern (51 bp):
GCGCCCCCTGCACCGCGCTATACGATAAGCTGGAGCCACGTGGGGTATAGC
Found at i:7018266 original size:49 final size:51
Alignment explanation
Indices: 7018200--7018310 Score: 165
Period size: 51 Copynumber: 2.2 Consensus size: 51
7018190 TAGCGCGGAT
* *
7018200 CAGGTACCGCGCTATACCTTTACTCCT-A-ATAATTTTATATAGTGTGCGG
1 CAGGTACCGCGCTATACCTTTACTCCTGACATAATTTTATATAGCGCGCGG
*
7018249 CAGGTACCGCGAC-ATACCTTTACTCCTGACATAATTTTATATAGCGCGGGG
1 CAGGTACCGCG-CTATACCTTTACTCCTGACATAATTTTATATAGCGCGCGG
7018300 CAGGTACCGCG
1 CAGGTACCGCG
7018311 TTTTGTATAA
Statistics
Matches: 56, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
49 25 0.45
50 2 0.04
51 29 0.52
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.29
Consensus pattern (51 bp):
CAGGTACCGCGCTATACCTTTACTCCTGACATAATTTTATATAGCGCGCGG
Found at i:7018304 original size:51 final size:49
Alignment explanation
Indices: 7018188--7018310 Score: 167
Period size: 49 Copynumber: 2.5 Consensus size: 49
7018178 CACGTAGGTG
**
7018188 TATAGCGCGGATCAGGTACCGCGCTATACCTTTACTCCTAATAATTTTA
1 TATAGCGCGGGGCAGGTACCGCGCTATACCTTTACTCCTAATAATTTTA
* * *
7018237 TATAGTGTGCGGCAGGTACCGCGAC-ATACCTTTACTCCTGACATAATTTTA
1 TATAGCGCGGGGCAGGTACCGCG-CTATACCTTTACTCCT-A-ATAATTTTA
7018288 TATAGCGCGGGGCAGGTACCGCG
1 TATAGCGCGGGGCAGGTACCGCG
7018311 TTTTGTATAA
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
49 32 0.51
50 2 0.03
51 29 0.46
ACGTcount: A:0.24, C:0.24, G:0.23, T:0.28
Consensus pattern (49 bp):
TATAGCGCGGGGCAGGTACCGCGCTATACCTTTACTCCTAATAATTTTA
Found at i:7022437 original size:18 final size:18
Alignment explanation
Indices: 7022414--7022449 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
7022404 AAGGCGATGA
7022414 CGGCATCATATATGGCTG
1 CGGCATCATATATGGCTG
7022432 CGGCATCATATATGGCTG
1 CGGCATCATATATGGCTG
7022450 TGGTGGCTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (18 bp):
CGGCATCATATATGGCTG
Found at i:7024155 original size:110 final size:111
Alignment explanation
Indices: 7023961--7024181 Score: 372
Period size: 110 Copynumber: 2.0 Consensus size: 111
7023951 ATTACAAAAA
* * * *
7023961 TTAATTCTTAATCTAATAATCATGCATTAAATGAATCAACTAATTATTAATAAAAATTTAAATTA
1 TTAATTATTAATATAATAATCATGCATTAAATAAATCAACTAAATATTAATAAAAATTTAAATTA
*
7024026 AATTAAAACGTTAAAATGTTACCGTATCAGCAAAGTGTCGAGATAT
66 AATTAAAACGTTAAAATGTTACCGTATCAGCAAAGTGTAGAGATAT
* *
7024072 TTAATTATTAATATAATAATCATGCATTAAATAAAT-AACTAAATATTACTAATAATTTAAATTA
1 TTAATTATTAATATAATAATCATGCATTAAATAAATCAACTAAATATTAATAAAAATTTAAATTA
7024136 AATTAAAACGTTAAAATGTTACCGTATCAGCAAAGTGTAGAGATAT
66 AATTAAAACGTTAAAATGTTACCGTATCAGCAAAGTGTAGAGATAT
7024182 ATGATTTCCA
Statistics
Matches: 103, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
110 70 0.68
111 33 0.32
ACGTcount: A:0.47, C:0.10, G:0.09, T:0.35
Consensus pattern (111 bp):
TTAATTATTAATATAATAATCATGCATTAAATAAATCAACTAAATATTAATAAAAATTTAAATTA
AATTAAAACGTTAAAATGTTACCGTATCAGCAAAGTGTAGAGATAT
Found at i:7025031 original size:15 final size:15
Alignment explanation
Indices: 7025011--7025090 Score: 117
Period size: 15 Copynumber: 5.4 Consensus size: 15
7025001 CCAGAAAATA
7025011 AATTACTGGAATTTG
1 AATTACTGGAATTTG
7025026 AATTACTGGAATTTG
1 AATTACTGGAATTTG
**
7025041 AATTACTGGAAAATG
1 AATTACTGGAATTTG
7025056 AATTACTGGAATTTG
1 AATTACTGGAATTTG
**
7025071 AATT-CTGGAAAATG
1 AATTACTGGAATTTG
7025085 AATTAC
1 AATTAC
7025091 ATTTCTGTAA
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
14 12 0.21
15 46 0.79
ACGTcount: A:0.39, C:0.07, G:0.19, T:0.35
Consensus pattern (15 bp):
AATTACTGGAATTTG
Found at i:7025068 original size:45 final size:44
Alignment explanation
Indices: 7025004--7025090 Score: 138
Period size: 45 Copynumber: 2.0 Consensus size: 44
7024994 TGGTTTTCCA
**
7025004 GAAAATAAATTACTGGAATTTGAATTACTGGAATTTGAATTACTG
1 GAAAATAAATTACTGGAATTTGAATT-CTGGAAAATGAATTACTG
*
7025049 GAAAATGAATTACTGGAATTTGAATTCTGGAAAATGAATTAC
1 GAAAATAAATTACTGGAATTTGAATTCTGGAAAATGAATTAC
7025091 ATTTCTGTAA
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
44 14 0.36
45 25 0.64
ACGTcount: A:0.41, C:0.07, G:0.18, T:0.33
Consensus pattern (44 bp):
GAAAATAAATTACTGGAATTTGAATTCTGGAAAATGAATTACTG
Found at i:7025088 original size:29 final size:30
Alignment explanation
Indices: 7025011--7025090 Score: 135
Period size: 30 Copynumber: 2.7 Consensus size: 30
7025001 CCAGAAAATA
**
7025011 AATTACTGGAATTTGAATTACTGGAATTTG
1 AATTACTGGAAAATGAATTACTGGAATTTG
7025041 AATTACTGGAAAATGAATTACTGGAATTTG
1 AATTACTGGAAAATGAATTACTGGAATTTG
7025071 AATT-CTGGAAAATGAATTAC
1 AATTACTGGAAAATGAATTAC
7025091 ATTTCTGTAA
Statistics
Matches: 48, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
29 16 0.33
30 32 0.67
ACGTcount: A:0.39, C:0.07, G:0.19, T:0.35
Consensus pattern (30 bp):
AATTACTGGAAAATGAATTACTGGAATTTG
Found at i:7025096 original size:20 final size:20
Alignment explanation
Indices: 7025073--7025142 Score: 122
Period size: 20 Copynumber: 3.5 Consensus size: 20
7025063 GGAATTTGAA
7025073 TTCTGGAAAATGAATTACAT
1 TTCTGGAAAATGAATTACAT
*
7025093 TTCTGTAAAATGAATTACAT
1 TTCTGGAAAATGAATTACAT
*
7025113 TTTTGGAAAATGAATTACAT
1 TTCTGGAAAATGAATTACAT
7025133 TTCTGGAAAA
1 TTCTGGAAAA
7025143 CATTTGGAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 46 1.00
ACGTcount: A:0.40, C:0.09, G:0.14, T:0.37
Consensus pattern (20 bp):
TTCTGGAAAATGAATTACAT
Found at i:7025364 original size:28 final size:27
Alignment explanation
Indices: 7025309--7025373 Score: 78
Period size: 28 Copynumber: 2.3 Consensus size: 27
7025299 TTTACTAAAA
*
7025309 TATTATTGAAATATATAAATAATATTAT
1 TATTATT-AAATATATAAAAAATATTAT
7025337 TCATTATTAAATATATAAAAAA-ATTTAT
1 T-ATTATTAAATATATAAAAAATA-TTAT
7025365 TATATATTA
1 TAT-TATTA
7025374 TTAAAATAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
27 3 0.09
28 24 0.73
29 6 0.18
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.46
Consensus pattern (27 bp):
TATTATTAAATATATAAAAAATATTAT
Found at i:7025399 original size:31 final size:32
Alignment explanation
Indices: 7025309--7025406 Score: 84
Period size: 31 Copynumber: 3.2 Consensus size: 32
7025299 TTTACTAAAA
*
7025309 TATTATTGAAATATAT--AAATA-ATATTAT-T
1 TATTATT-AAATATATAAAAAAATATATTATAT
* *
7025338 CATTATTAAATATATAAAAAAATTTATTATA-
1 TATTATTAAATATATAAAAAAATATATTATAT
*
7025369 TATTATTAAA-ATA-AAAATATAATATCTTATAT
1 TATTATTAAATATATAAAA-A-AATATATTATAT
7025401 TATTAT
1 TATTAT
7025407 AATATAATTG
Statistics
Matches: 56, Mismatches: 6, Indels: 11
0.77 0.08 0.15
Matches are distributed among these distances:
28 8 0.14
29 10 0.18
30 8 0.14
31 24 0.43
32 6 0.11
ACGTcount: A:0.51, C:0.02, G:0.01, T:0.46
Consensus pattern (32 bp):
TATTATTAAATATATAAAAAAATATATTATAT
Found at i:7025439 original size:17 final size:17
Alignment explanation
Indices: 7025395--7025452 Score: 64
Period size: 17 Copynumber: 3.2 Consensus size: 17
7025385 ATATAATATC
7025395 TTATATTATTATAATATAA
1 TTATATTATTATAA-AT-A
7025414 TTGATTATT-TTATATAATA
1 TT-A-TATTATTATA-AATA
7025433 TTATATTATTATAAATA
1 TTATATTATTATAAATA
7025450 TTA
1 TTA
7025453 ATAAATATAT
Statistics
Matches: 35, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
17 11 0.31
18 6 0.17
19 5 0.14
20 8 0.23
21 5 0.14
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (17 bp):
TTATATTATTATAAATA
Found at i:7025472 original size:38 final size:38
Alignment explanation
Indices: 7025385--7025466 Score: 101
Period size: 40 Copynumber: 2.0 Consensus size: 38
7025375 TAAAATAAAA
**
7025385 ATATAATATCTTATATTATTATAATATAATTGATTATTTT
1 ATATAATA--TTATATTATTATAATATAATAAATTATTTT
7025425 ATATAATATTATATTATTATAAATATTAATAAATATATTTT
1 ATATAATATTATATTATTAT-AATA-TAATAAAT-TATTTT
7025466 A
1 A
7025467 AATATTTTAA
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
38 12 0.32
39 4 0.11
40 14 0.38
41 7 0.19
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.52
Consensus pattern (38 bp):
ATATAATATTATATTATTATAATATAATAAATTATTTT
Found at i:7025694 original size:42 final size:42
Alignment explanation
Indices: 7025646--7025765 Score: 188
Period size: 42 Copynumber: 2.9 Consensus size: 42
7025636 ATGAATTACA
*
7025646 TTCCGGAAAACGAATTACGTGAAACAAACACGGAAAAACGTT
1 TTCCGGAAAACGAATTACGTGAAACAAACACGGAAAAACATT
*
7025688 TTCCGGAAAACGAATTACGTGAAACAAATAC-GAGAAAACATT
1 TTCCGGAAAACGAATTACGTGAAACAAACACGGA-AAAACATT
* *
7025730 TTCCGAAAAACAAATTACGTGAAACAAACACGGAAA
1 TTCCGGAAAACGAATTACGTGAAACAAACACGGAAA
7025766 TTCGGAGAAA
Statistics
Matches: 71, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
41 2 0.03
42 67 0.94
43 2 0.03
ACGTcount: A:0.48, C:0.18, G:0.17, T:0.17
Consensus pattern (42 bp):
TTCCGGAAAACGAATTACGTGAAACAAACACGGAAAAACATT
Found at i:7036933 original size:111 final size:111
Alignment explanation
Indices: 7036637--7036938 Score: 354
Period size: 111 Copynumber: 2.7 Consensus size: 111
7036627 GGATCTTGTG
* * * * *
7036637 GAGAGTTTTGCTTCATTGTGATCAGTTTTCACTTCTGATATGCAGTCAACATTAAGGGTTTCTGT
1 GAGAGCTTTGCTTCATTGTGATCAATTTTCGCTTCTGATATGCAGTCAATATTAAGGGATTCTGT
*
7036702 GAGGAGCTTTGTTTCGCTACCATCAATTTCCGCTTCTGATACTATG
66 GAGGAGCTTTGTTTCGCTACCATCAATTTCCGCTTCTGATACTATA
* * * ** * *
7036748 GAGAGCTTTTCTTCATTATGATCAATTTTCGATTCTGATATGTTGTCAATGTTAAGGGATTCTGC
1 GAGAGCTTTGCTTCATTGTGATCAATTTTCGCTTCTGATATGCAGTCAATATTAAGGGATTCTGT
* ** * ** *
7036813 AAAAAGCTTTGTTTCGTTATGATCGATTTCCGCTTCTGATACTATA
66 GAGGAGCTTTGTTTCGCTACCATCAATTTCCGCTTCTGATACTATA
* * * *
7036859 GAGAGCTTTGCTTCATCGTGATCAA-TTTCTGCTTCTGATATACAATCAATATTAAGGAATTCTG
1 GAGAGCTTTGCTTCATTGTGATCAATTTTC-GCTTCTGATATGCAGTCAATATTAAGGGATTCTG
* *
7036923 TGAGGGGCTTTATTTC
65 TGAGGAGCTTTGTTTC
7036939 ATTGCCAACA
Statistics
Matches: 154, Mismatches: 36, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
110 4 0.03
111 150 0.97
ACGTcount: A:0.23, C:0.17, G:0.20, T:0.40
Consensus pattern (111 bp):
GAGAGCTTTGCTTCATTGTGATCAATTTTCGCTTCTGATATGCAGTCAATATTAAGGGATTCTGT
GAGGAGCTTTGTTTCGCTACCATCAATTTCCGCTTCTGATACTATA
Found at i:7037628 original size:66 final size:66
Alignment explanation
Indices: 7037576--7037741 Score: 296
Period size: 66 Copynumber: 2.5 Consensus size: 66
7037566 GTCTTCTTTG
*
7037576 AGGATCTTTGCATTGTTTTGATCAGTTTCTGCTTTCGATTTGTGATCGACATTAAGAGATTCTAT
1 AGGAGCTTTGCATTGTTTTGATCAGTTTCTGCTTTCGATTTGTGATCGACATTAAGAGATTCTAT
7037641 A
66 A
*
7037642 AGGAGCTTTGCATTGTTTTGATCAGTTTCCGCTTTCGATTTGTGATCGACATTAAGAGATTCTAT
1 AGGAGCTTTGCATTGTTTTGATCAGTTTCTGCTTTCGATTTGTGATCGACATTAAGAGATTCTAT
7037707 A
66 A
* *
7037708 AGGAGCTTTGCTTTGTTATGATCAGTTTCTGCTT
1 AGGAGCTTTGCATTGTTTTGATCAGTTTCTGCTT
7037742 CTGATATGCA
Statistics
Matches: 95, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
66 95 1.00
ACGTcount: A:0.21, C:0.14, G:0.21, T:0.43
Consensus pattern (66 bp):
AGGAGCTTTGCATTGTTTTGATCAGTTTCTGCTTTCGATTTGTGATCGACATTAAGAGATTCTAT
A
Found at i:7037771 original size:66 final size:66
Alignment explanation
Indices: 7037530--7037794 Score: 263
Period size: 66 Copynumber: 4.0 Consensus size: 66
7037520 CTTCATTGTC
* * * * *
7037530 ATCAGTTTCTGC-TTCTGATATGCAGA-CAACATTACG-GTCTTCTTTGAGGATCTTTGCATTGT
1 ATCAGTTTCTGCTTTC-GATATG-AGATCAACATTAAGAG-ATTCTATAAGGAGCTTTGCATTGT
7037592 TTTG
63 TTTG
* * *
7037596 ATCAGTTTCTGCTTTCGATTTGTGATCGACATTAAGAGATTCTATAAGGAGCTTTGCATTGTTTT
1 ATCAGTTTCTGCTTTCGATATGAGATCAACATTAAGAGATTCTATAAGGAGCTTTGCATTGTTTT
7037661 G
66 G
* * * * * *
7037662 ATCAGTTTCCGCTTTCGATTTGTGATCGACATTAAGAGATTCTATAAGGAGCTTTGCTTTGTTAT
1 ATCAGTTTCTGCTTTCGATATGAGATCAACATTAAGAGATTCTATAAGGAGCTTTGCATTGTTTT
7037727 G
66 G
*** * *
7037728 ATCAGTTTCTGC-TTCTGATATGCAGA-CAACATCGCG-GTCTTCTACAAGGAGCTTTGCATTGT
1 ATCAGTTTCTGCTTTC-GATATG-AGATCAACATTAAGAG-ATTCTATAAGGAGCTTTGCATTGT
7037790 TTTG
63 TTTG
7037794 A
1 A
7037795 ATAGTGTCCG
Statistics
Matches: 171, Mismatches: 22, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
65 6 0.04
66 159 0.93
67 6 0.04
ACGTcount: A:0.22, C:0.17, G:0.21, T:0.40
Consensus pattern (66 bp):
ATCAGTTTCTGCTTTCGATATGAGATCAACATTAAGAGATTCTATAAGGAGCTTTGCATTGTTTT
G
Found at i:7045441 original size:21 final size:23
Alignment explanation
Indices: 7045416--7045462 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
7045406 TCTATAAGAA
*
7045416 TAAAAATATT-AT-ATTATATTT
1 TAAAAATATTAATAAATATATTT
*
7045437 TAAAATTATTAATAAATATATTT
1 TAAAAATATTAATAAATATATTT
7045460 TAA
1 TAA
7045463 GGAGTTTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 9 0.41
22 2 0.09
23 11 0.50
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (23 bp):
TAAAAATATTAATAAATATATTT
Found at i:7045514 original size:43 final size:40
Alignment explanation
Indices: 7045467--7045568 Score: 100
Period size: 40 Copynumber: 2.5 Consensus size: 40
7045457 TTTTAAGGAG
* *
7045467 TTTTTATAATATTATTAGACTATTATATTAATATTAATAATAA
1 TTTTTATAATATTATTA-A--ATAATATAAATATTAATAATAA
* * *
7045510 TTTTTA-AGAAATTATTAAATAATATAAATTTTATTAATAA
1 TTTTTATA-ATATTATTAAATAATATAAATATTAATAATAA
7045550 TTTATTAT-ATATTATTAAA
1 TTT-TTATAATATTATTAAA
7045569 ATAAGAATAT
Statistics
Matches: 50, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
40 31 0.62
41 3 0.06
42 2 0.04
43 14 0.28
ACGTcount: A:0.46, C:0.01, G:0.02, T:0.51
Consensus pattern (40 bp):
TTTTTATAATATTATTAAATAATATAAATATTAATAATAA
Found at i:7048536 original size:16 final size:17
Alignment explanation
Indices: 7048509--7048540 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
7048499 AAAAAAGTAA
7048509 TTAAATTATATTAAAAT
1 TTAAATTATATTAAAAT
7048526 TTAAATT-TATTAAAA
1 TTAAATTATATTAAAA
7048541 GGCGATCAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
TTAAATTATATTAAAAT
Found at i:7049972 original size:177 final size:177
Alignment explanation
Indices: 7049643--7049981 Score: 419
Period size: 177 Copynumber: 1.9 Consensus size: 177
7049633 CTGAAACTGG
* ** *
7049643 GACCTTGGAAGATATGAATTTGGTGCAGTCAACTTCCTGGCGATCAATTACGGACCCTTTTCATG
1 GACCTTGGAAGATATGAATTTGGTGCAGTCAACTTCCAGGCGATCAATTACAAACACTTTTCATG
* * * * *
7049708 AAACTAAACCCAGAATGGTCACCTTCTTTAATTCCTACTTAACTCATGTCTAGAACCAGAAAGCA
66 AAACCAAACCCAGAATGGCCACCTTCATTAATTCCTACTTAACTCATGTCTAAAACCAGAAACCA
* * *
7049773 TGAGTTTCTATCTATTACAATGCTAAGGAATTATATTTACCCTGAAT
131 TGAGCTACTATCTATAACAATGCTAAGGAATTATATTTACCCTGAAT
* * *
7049820 GACCTTGGAAGATATGAATTTGGATGCAGTCAACTT-CAGGTGATCAATTACAAATACTTTTCGT
1 GACCTTGGAAGATATGAATTTGG-TGCAGTCAACTTCCAGGCGATCAATTACAAACACTTTTCAT
* * * ** * ***
7049884 GAAACCAAACTCAGAATGGCCACCTTCATTGATTCTTTGTTAGCTCATGTCTAAAATTGGAAACC
65 GAAACCAAACCCAGAATGGCCACCTTCATTAATTCCTACTTAACTCATGTCTAAAACCAGAAACC
* * *
7049949 CTGAGCTACTGTCTATAACAATGCTAATGAATT
130 ATGAGCTACTATCTATAACAATGCTAAGGAATT
7049982 TTACGTGCCT
Statistics
Matches: 134, Mismatches: 27, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
177 122 0.91
178 12 0.09
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.32
Consensus pattern (177 bp):
GACCTTGGAAGATATGAATTTGGTGCAGTCAACTTCCAGGCGATCAATTACAAACACTTTTCATG
AAACCAAACCCAGAATGGCCACCTTCATTAATTCCTACTTAACTCATGTCTAAAACCAGAAACCA
TGAGCTACTATCTATAACAATGCTAAGGAATTATATTTACCCTGAAT
Found at i:7054763 original size:18 final size:18
Alignment explanation
Indices: 7054714--7054765 Score: 54
Period size: 18 Copynumber: 2.8 Consensus size: 18
7054704 AATTTTCAAT
*
7054714 CTTTATTCTCTTATTTTTA
1 CTTTAATCTCTT-TTTTTA
7054733 CTTTAAT-TGCTTTTATTTA
1 CTTTAATCT-CTTTT-TTTA
7054752 -TTTAATCTCTTTTT
1 CTTTAATCTCTTTTT
7054766 ACTATTTACT
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
17 1 0.03
18 14 0.48
19 14 0.48
ACGTcount: A:0.17, C:0.13, G:0.02, T:0.67
Consensus pattern (18 bp):
CTTTAATCTCTTTTTTTA
Found at i:7054771 original size:18 final size:18
Alignment explanation
Indices: 7054750--7054785 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
7054740 TGCTTTTATT
*
7054750 TATTTAATCTCTTTTTAC
1 TATTTAATCTCATTTTAC
*
7054768 TATTTACTCTCATTTTAC
1 TATTTAATCTCATTTTAC
7054786 CAAAAACGCC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.22, C:0.19, G:0.00, T:0.58
Consensus pattern (18 bp):
TATTTAATCTCATTTTAC
Found at i:7061406 original size:26 final size:26
Alignment explanation
Indices: 7061370--7061422 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
7061360 GGTCTGATGT
* * *
7061370 GACAGTTTCTACAAGGTTTAGTCAGC
1 GACAGTTTCTAAAAGATCTAGTCAGC
*
7061396 GACATTTTCTAAAAGATCTAGTCAGC
1 GACAGTTTCTAAAAGATCTAGTCAGC
7061422 G
1 G
7061423 CGCCTGCTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
GACAGTTTCTAAAAGATCTAGTCAGC
Found at i:7062311 original size:19 final size:20
Alignment explanation
Indices: 7062261--7062313 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 20
7062251 CATTTTCAAT
* *
7062261 CTTTATTCTCTTATT-TTTA
1 CTTTAATCTCTTTTTATTTA
*
7062280 CTTTAAT-TGTTTTTATTTA
1 CTTTAATCTCTTTTTATTTA
7062299 -TTTAATCTCTTTTTA
1 CTTTAATCTCTTTTTA
7062314 CCATTTACTC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
18 11 0.39
19 17 0.61
ACGTcount: A:0.19, C:0.11, G:0.02, T:0.68
Consensus pattern (20 bp):
CTTTAATCTCTTTTTATTTA
Found at i:7063394 original size:2 final size:2
Alignment explanation
Indices: 7063389--7063421 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
7063379 AGTTTTTTTA
7063389 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7063422 ACATTAATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7064256 original size:38 final size:38
Alignment explanation
Indices: 7064192--7064284 Score: 145
Period size: 38 Copynumber: 2.5 Consensus size: 38
7064182 TTTATTTTGT
7064192 TCGAGTC-GGTCGGG-TTTTTTAAGTGTGATATTCGGG
1 TCGAGTCGGGTCGGGTTTTTTTAAGTGTGATATTCGGG
*
7064228 TCGAGTTGGGTCGGGTTTTTTTAAGTGTGATATTCGGG
1 TCGAGTCGGGTCGGGTTTTTTTAAGTGTGATATTCGGG
*
7064266 TCGGGTCGGGTTCGGGTTT
1 TCGAGTCGGG-TCGGGTTT
7064285 AGGGTGAAAA
Statistics
Matches: 51, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
36 6 0.12
37 7 0.14
38 30 0.59
39 8 0.16
ACGTcount: A:0.11, C:0.11, G:0.39, T:0.40
Consensus pattern (38 bp):
TCGAGTCGGGTCGGGTTTTTTTAAGTGTGATATTCGGG
Found at i:7064643 original size:17 final size:18
Alignment explanation
Indices: 7064621--7064667 Score: 69
Period size: 18 Copynumber: 2.7 Consensus size: 18
7064611 TATGGAATTG
*
7064621 GATTCCAATTCC-TGACA
1 GATTCCAATTCCTTCACA
7064638 GATTCCAATTCCTTCACA
1 GATTCCAATTCCTTCACA
*
7064656 AATTCCAATTCC
1 GATTCCAATTCC
7064668 CTCAGAAACA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
17 12 0.44
18 15 0.56
ACGTcount: A:0.30, C:0.32, G:0.06, T:0.32
Consensus pattern (18 bp):
GATTCCAATTCCTTCACA
Found at i:7068958 original size:49 final size:49
Alignment explanation
Indices: 7068897--7068995 Score: 189
Period size: 49 Copynumber: 2.0 Consensus size: 49
7068887 CACTCACCTA
*
7068897 GGGACAAGTGTTACTACCTTTGAACCTCTAGTTCCACGAACCTCCGGGT
1 GGGACAAGTGTTACTACCTTTGAACCTCTAGTTCCACGAACCTACGGGT
7068946 GGGACAAGTGTTACTACCTTTGAACCTCTAGTTCCACGAACCTACGGGT
1 GGGACAAGTGTTACTACCTTTGAACCTCTAGTTCCACGAACCTACGGGT
7068995 G
1 G
7068996 TGCGAACGTA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (49 bp):
GGGACAAGTGTTACTACCTTTGAACCTCTAGTTCCACGAACCTACGGGT
Found at i:7071628 original size:18 final size:18
Alignment explanation
Indices: 7071579--7071630 Score: 54
Period size: 18 Copynumber: 2.8 Consensus size: 18
7071569 CATTTTCAAT
*
7071579 CTTTATTCTCTTATTTTTA
1 CTTTAATCTCTT-TTTTTA
7071598 CTTTAAT-TGCTTTTATTTA
1 CTTTAATCT-CTTTT-TTTA
7071617 -TTTAATCTCTTTTT
1 CTTTAATCTCTTTTT
7071631 ACTATTTACT
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
17 1 0.03
18 14 0.48
19 14 0.48
ACGTcount: A:0.17, C:0.13, G:0.02, T:0.67
Consensus pattern (18 bp):
CTTTAATCTCTTTTTTTA
Found at i:7071636 original size:18 final size:18
Alignment explanation
Indices: 7071615--7071650 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
7071605 TGCTTTTATT
*
7071615 TATTTAATCTCTTTTTAC
1 TATTTAATCTCATTTTAC
*
7071633 TATTTACTCTCATTTTAC
1 TATTTAATCTCATTTTAC
7071651 CAAAAACGCC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.22, C:0.19, G:0.00, T:0.58
Consensus pattern (18 bp):
TATTTAATCTCATTTTAC
Found at i:7078276 original size:26 final size:26
Alignment explanation
Indices: 7078240--7078292 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
7078230 GGTCTGTTGT
* * *
7078240 GACAGTTTCTACAAGGTTTAGTCAGC
1 GACAGTTTCTAAAAGATCTAGTCAGC
*
7078266 GACATTTTCTAAAAGATCTAGTCAGC
1 GACAGTTTCTAAAAGATCTAGTCAGC
7078292 G
1 G
7078293 CGCCTGCTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
GACAGTTTCTAAAAGATCTAGTCAGC
Found at i:7079187 original size:18 final size:18
Alignment explanation
Indices: 7079166--7079202 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
7079156 TGTTTTATTT
*
7079166 ATTTAATCTCTTTTTACC
1 ATTTAATCTCATTTTACC
*
7079184 ATTTACTCTCATTTTACC
1 ATTTAATCTCATTTTACC
7079202 A
1 A
7079203 AAAAAAAACC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.51
Consensus pattern (18 bp):
ATTTAATCTCATTTTACC
Found at i:7081120 original size:38 final size:38
Alignment explanation
Indices: 7081055--7081147 Score: 154
Period size: 38 Copynumber: 2.5 Consensus size: 38
7081045 TTTATTTTGT
7081055 TCGAGTC-GGTCGGG-TTTTTTAAGTGTGATATTCGGG
1 TCGAGTCGGGTCGGGTTTTTTTAAGTGTGATATTCGGG
7081091 TCGAGTCGGGTCGGGTTTTTTTAAGTGTGATATTCGGG
1 TCGAGTCGGGTCGGGTTTTTTTAAGTGTGATATTCGGG
*
7081129 TCGGGTCGGGTTCGGGTTT
1 TCGAGTCGGG-TCGGGTTT
7081148 AGGGTGTAAA
Statistics
Matches: 53, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
36 7 0.13
37 7 0.13
38 31 0.58
39 8 0.15
ACGTcount: A:0.11, C:0.12, G:0.39, T:0.39
Consensus pattern (38 bp):
TCGAGTCGGGTCGGGTTTTTTTAAGTGTGATATTCGGG
Found at i:7081518 original size:18 final size:17
Alignment explanation
Indices: 7081481--7081527 Score: 67
Period size: 18 Copynumber: 2.7 Consensus size: 17
7081471 TATGGAATTG
*
7081481 GATTCCAATTCCTGACA
1 GATTCCAATTCCTCACA
*
7081498 GATTCTAATTCCTTCACA
1 GATTCCAATTCC-TCACA
7081516 GATTCCAATTCC
1 GATTCCAATTCC
7081528 CTCAGAAACA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
17 11 0.42
18 15 0.58
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.34
Consensus pattern (17 bp):
GATTCCAATTCCTCACA
Found at i:7083749 original size:177 final size:177
Alignment explanation
Indices: 7083420--7083758 Score: 419
Period size: 177 Copynumber: 1.9 Consensus size: 177
7083410 CTGAAACTGG
* ** *
7083420 GACCTTGGAAGATATGAATTTGGTGCAGTCAACTTCCTGGCGATCAATTACGGACCCTTTTCATG
1 GACCTTGGAAGATATGAATTTGGTGCAGTCAACTTCCAGGCGATCAATTACAAACACTTTTCATG
* * * * *
7083485 AAACTAAACCCAGAATGGTCACCTTCTTTAATTCCTACTTAACTCATGTCTAGAACCAGAAAGCA
66 AAACCAAACCCAGAATGGCCACCTTCATTAATTCCTACTTAACTCATGTCTAAAACCAGAAACCA
* * *
7083550 TGAGTTTCTATCTATTACAATGCTAAGGAATTATATTTACCCTGAAT
131 TGAGCTACTATCTATAACAATGCTAAGGAATTATATTTACCCTGAAT
* * *
7083597 GACCTTGGAAGATATGAATTTGGATGCAGTCAACTT-CAGGTGATCAATTACAAATACTTTTCGT
1 GACCTTGGAAGATATGAATTTGG-TGCAGTCAACTTCCAGGCGATCAATTACAAACACTTTTCAT
* * * ** * ***
7083661 GAAACCAAACTCAGAATGGCCACCTTCATTGATTCTTTGTTAGCTCATGTCTAAAATTGGAAACC
65 GAAACCAAACCCAGAATGGCCACCTTCATTAATTCCTACTTAACTCATGTCTAAAACCAGAAACC
* * *
7083726 CTGAGCTACTGTCTATAACAATGCTAATGAATT
130 ATGAGCTACTATCTATAACAATGCTAAGGAATT
7083759 TTACGTGCCT
Statistics
Matches: 134, Mismatches: 27, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
177 122 0.91
178 12 0.09
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.32
Consensus pattern (177 bp):
GACCTTGGAAGATATGAATTTGGTGCAGTCAACTTCCAGGCGATCAATTACAAACACTTTTCATG
AAACCAAACCCAGAATGGCCACCTTCATTAATTCCTACTTAACTCATGTCTAAAACCAGAAACCA
TGAGCTACTATCTATAACAATGCTAAGGAATTATATTTACCCTGAAT
Found at i:7092046 original size:22 final size:22
Alignment explanation
Indices: 7092021--7092067 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
7092011 ACCAAAAGAG
*
7092021 AAGTCAAAATCACAATTTATCA
1 AAGTCAAAAGCACAATTTATCA
* *
7092043 AAGTCAAAAGCATACTTTATCA
1 AAGTCAAAAGCACAATTTATCA
7092065 AAG
1 AAG
7092068 GCTTCTCCAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.49, C:0.17, G:0.09, T:0.26
Consensus pattern (22 bp):
AAGTCAAAAGCACAATTTATCA
Found at i:7095485 original size:36 final size:36
Alignment explanation
Indices: 7095409--7095678 Score: 179
Period size: 37 Copynumber: 7.6 Consensus size: 36
7095399 TATTAAATAC
* *
7095409 ATATATATATTATAG-TTTGAAATCATTTTG--AAATT
1 ATATA-ATA-TATAGTTTTTAAAACATTTTGAAAAATT
* * *
7095444 ATATAATATATAGTTTTTAAAATACTTTGAAAAATG
1 ATATAATATATAGTTTTTAAAACATTTTGAAAAATT
* * * *
7095480 GTATAAGATATGGTTTTTAAAACATTTTGAGAAACTT
1 ATATAATATATAGTTTTTAAAACATTTTGA-AAAATT
*
7095517 ATATATTATATAG-TTTTAATAACATTTTTGAAAAATT
1 ATATAATATATAGTTTTTAA-AACA-TTTTGAAAAATT
* * *
7095554 ATATAATATATAGTTTTAAAAACATTTTTTTAAAAACT
1 ATATAATATATAGTTTTTAAAACA--TTTTGAAAAATT
* *
7095592 -TAT-AT-GATA-TTTTTAAAATCATTTTTG-AAAACT
1 ATATAATATATAGTTTTTAAAA-CA-TTTTGAAAAATT
* * * **
7095625 ATATGATATATAATTTTGAAAAC-TTTT-TTAAA--
1 ATATAATATATAGTTTTTAAAACATTTTGAAAAATT
*
7095657 ATATAATATATAATTTTTAAAA
1 ATATAATATATAGTTTTTAAAA
7095679 AAATATATTT
Statistics
Matches: 192, Mismatches: 29, Indels: 31
0.76 0.12 0.12
Matches are distributed among these distances:
32 20 0.10
33 11 0.06
34 37 0.19
35 12 0.06
36 41 0.21
37 49 0.26
38 22 0.11
ACGTcount: A:0.44, C:0.04, G:0.07, T:0.46
Consensus pattern (36 bp):
ATATAATATATAGTTTTTAAAACATTTTGAAAAATT
Found at i:7095666 original size:32 final size:33
Alignment explanation
Indices: 7095554--7095678 Score: 121
Period size: 34 Copynumber: 3.7 Consensus size: 33
7095544 TTGAAAAATT
* *
7095554 ATATAATATATAGTTTTAAAAACATTTTTTTAAA
1 ATATAATATATAATTTTTAAAACA-TTTTTTAAA
* *
7095588 A-ACTTATATGAT-ATTTTTAAAATCATTTTTGAAA
1 ATA-TAATAT-ATAATTTTTAAAA-CATTTTTTAAA
*
7095622 ACTATATGATATATAATTTTGAAAAC-TTTTTTAAA
1 A-TATA--ATATATAATTTTTAAAACATTTTTTAAA
7095657 ATATAATATATAATTTTTAAAA
1 ATATAATATATAATTTTTAAAA
7095679 AAATATATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 18
0.74 0.08 0.18
Matches are distributed among these distances:
32 16 0.21
33 1 0.01
34 27 0.36
35 14 0.19
36 4 0.05
37 13 0.17
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.46
Consensus pattern (33 bp):
ATATAATATATAATTTTTAAAACATTTTTTAAA
Found at i:7095667 original size:71 final size:68
Alignment explanation
Indices: 7095522--7095678 Score: 169
Period size: 71 Copynumber: 2.2 Consensus size: 68
7095512 AACTTATATA
* * *
7095522 TTATAT-AGTTTTAATAACATTTTTGAAAAATTATATAATATATAGTTTTAAAAACATTTTTTTA
1 TTATATAATTTTTAA-AACATTTTTGAAAAACTATATAATATATAATTTTAAAAACA-TTTTTTA
7095586 AAAAC
64 AAAAC
* *
7095591 TTATATGATATTTTTAAAATCATTTTTG-AAAACTATATGATATATAATTTTGAAAAC-TTTTTT
1 TTATAT-A-ATTTTTAAAA-CATTTTTGAAAAACTATATAATATATAATTTTAAAAACATTTTTT
7095654 AAAATA-
63 AAAA-AC
7095660 TAATATATAATTTTTAAAA
1 T--TATATAATTTTTAAAA
7095679 AAATATATTT
Statistics
Matches: 76, Mismatches: 5, Indels: 14
0.80 0.05 0.15
Matches are distributed among these distances:
69 27 0.36
70 2 0.03
71 32 0.42
72 15 0.20
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (68 bp):
TTATATAATTTTTAAAACATTTTTGAAAAACTATATAATATATAATTTTAAAAACATTTTTTAAA
AAC
Found at i:7096314 original size:168 final size:170
Alignment explanation
Indices: 7096036--7096375 Score: 657
Period size: 168 Copynumber: 2.0 Consensus size: 170
7096026 TCGAAACAAA
7096036 CACGTTCCGAAAAAACGAAAACCCAAATACATGCAACAACCAGTCACCCCGAAATATCCAGGATT
1 CACGTTCCGAAAAAACGAAAACCCAAATACATGCAACAACCAGTCACCCCGAAATATCCAGGATT
7096101 ACCCTAAAATAGACGAAAACATCCCTCAACGGGCCTATATAAATACC-AGGGTATCATTGAGAAT
66 ACCCTAAAATAGACGAAAACATCCCTCAACGGGCCTATATAAATACCAAGGGTATCATTGAGAAT
7096165 AAAGAGAGCC-ACAACGGCAAGACCGACACCAAGTATCAT
131 AAAGAGAGCCAACAACGGCAAGACCGACACCAAGTATCAT
7096204 CACGTTCCGAAAAAACGAAAACCCAAATACATGCAACAACCAGTCACCCCGAAATATCCAGGATT
1 CACGTTCCGAAAAAACGAAAACCCAAATACATGCAACAACCAGTCACCCCGAAATATCCAGGATT
7096269 ACCCTAAAATAGACGAAAACATCCCTCAACGGGCCTATATAAATACCAGAGGGTATCATTGAGAA
66 ACCCTAAAATAGACGAAAACATCCCTCAACGGGCCTATATAAATACCA-AGGGTATCATTGAGAA
7096334 TAAAGAGAGCCAACAACGGCAAGACCGACACCAAGTATCAT
130 TAAAGAGAGCCAACAACGGCAAGACCGACACCAAGTATCAT
7096375 C
1 C
7096376 GAAAGCCAAA
Statistics
Matches: 169, Mismatches: 0, Indels: 3
0.98 0.00 0.02
Matches are distributed among these distances:
168 112 0.66
170 27 0.16
171 30 0.18
ACGTcount: A:0.42, C:0.27, G:0.16, T:0.15
Consensus pattern (170 bp):
CACGTTCCGAAAAAACGAAAACCCAAATACATGCAACAACCAGTCACCCCGAAATATCCAGGATT
ACCCTAAAATAGACGAAAACATCCCTCAACGGGCCTATATAAATACCAAGGGTATCATTGAGAAT
AAAGAGAGCCAACAACGGCAAGACCGACACCAAGTATCAT
Found at i:7097206 original size:18 final size:18
Alignment explanation
Indices: 7097184--7097224 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
7097174 TCTTTGATAT
7097184 TTTTTATATATATTGTTTA
1 TTTTTAT-TATATTGTTTA
* *
7097203 TTTTTATTTTTTTGTTTA
1 TTTTTATTATATTGTTTA
7097221 TTTT
1 TTTT
7097225 CTCTTTTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 13 0.65
19 7 0.35
ACGTcount: A:0.17, C:0.00, G:0.05, T:0.78
Consensus pattern (18 bp):
TTTTTATTATATTGTTTA
Found at i:7097231 original size:17 final size:18
Alignment explanation
Indices: 7097196--7097257 Score: 51
Period size: 17 Copynumber: 3.6 Consensus size: 18
7097186 TTTATATATA
*
7097196 TTGTTTATTTTTATTTTT
1 TTGTTTATTTTTATCTTT
*
7097214 TTGTTTA-TTTTCTCTTT
1 TTGTTTATTTTTATCTTT
7097231 TT-TATT-TTTTTAT-TATT
1 TTGT-TTATTTTTATCT-TT
*
7097248 TTATTTATTT
1 TTGTTTATTT
7097258 ATGTATTCAT
Statistics
Matches: 36, Mismatches: 3, Indels: 10
0.73 0.06 0.20
Matches are distributed among these distances:
16 2 0.06
17 23 0.64
18 11 0.31
ACGTcount: A:0.13, C:0.03, G:0.03, T:0.81
Consensus pattern (18 bp):
TTGTTTATTTTTATCTTT
Found at i:7097231 original size:18 final size:18
Alignment explanation
Indices: 7097196--7097233 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
7097186 TTTATATATA
*
7097196 TTGTTTATTTTTATTTTT
1 TTGTTTATTTTTACTTTT
7097214 TTGTTTATTTTCT-CTTTT
1 TTGTTTATTTT-TACTTTT
7097232 TT
1 TT
7097234 ATTTTTTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 17 0.94
19 1 0.06
ACGTcount: A:0.08, C:0.05, G:0.05, T:0.82
Consensus pattern (18 bp):
TTGTTTATTTTTACTTTT
Found at i:7097239 original size:8 final size:8
Alignment explanation
Indices: 7097203--7097259 Score: 60
Period size: 8 Copynumber: 6.9 Consensus size: 8
7097193 ATATTGTTTA
7097203 TTTTTATT
1 TTTTTATT
*
7097211 TTTTTGTT
1 TTTTTATT
*
7097219 TATTTTCTCT
1 T-TTTTAT-T
7097229 TTTTTATT
1 TTTTTATT
7097237 TTTTTATT
1 TTTTTATT
*
7097245 ATTTTATT
1 TTTTTATT
*
7097253 TATTTAT
1 TTTTTAT
7097260 GTATTCATGT
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
8 29 0.71
9 10 0.24
10 2 0.05
ACGTcount: A:0.14, C:0.04, G:0.02, T:0.81
Consensus pattern (8 bp):
TTTTTATT
Found at i:7097240 original size:16 final size:16
Alignment explanation
Indices: 7097230--7097264 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
7097220 ATTTTCTCTT
7097230 TTTTATTTTTTTATTA
1 TTTTATTTTTTTATTA
*
7097246 TTTTATTTATTTATGTA
1 TTTTATTTTTTTAT-TA
7097263 TT
1 TT
7097265 CATGTATCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.77
Consensus pattern (16 bp):
TTTTATTTTTTTATTA
Found at i:7101114 original size:98 final size:97
Alignment explanation
Indices: 7100945--7101189 Score: 402
Period size: 98 Copynumber: 2.5 Consensus size: 97
7100935 ATAATAAAGC
* * *
7100945 TTGAGCTGTCCCTCTA-AAGCAATTGGTTTAATGCCCCGGCTTTATGGATAAGATTCAACTAGCC
1 TTGAGCTATCCCTCTAGAA-CAATTGGTTAAACG-CCCGGCTTTATGGATAAGATTCAACTAGCC
7101009 TGATAAAGGTGATTATAATATATATACAACGATA
64 TGATAAAGGTGATTATAATATATATACAACGATA
* *
7101043 TTGAGCTATCCCTCTAGAACAATTGGTTAAACGTCCCGGCTTTATGGATAATATTCAGCTAGCCT
1 TTGAGCTATCCCTCTAGAACAATTGGTTAAACG-CCCGGCTTTATGGATAAGATTCAACTAGCCT
7101108 GATAAAGGTGATTATAATATATATACAACGATA
65 GATAAAGGTGATTATAATATATATACAACGATA
7101141 TTGAGCTATCCCTCTAGAACAATTGGTTAAACGCCCTGGCTTTATGGAT
1 TTGAGCTATCCCTCTAGAACAATTGGTTAAACGCCC-GGCTTTATGGAT
7101190 CCAGCTAGCC
Statistics
Matches: 139, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
97 3 0.02
98 134 0.96
99 2 0.01
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.32
Consensus pattern (97 bp):
TTGAGCTATCCCTCTAGAACAATTGGTTAAACGCCCGGCTTTATGGATAAGATTCAACTAGCCTG
ATAAAGGTGATTATAATATATATACAACGATA
Found at i:7102203 original size:84 final size:84
Alignment explanation
Indices: 7102069--7103842 Score: 2077
Period size: 84 Copynumber: 21.1 Consensus size: 84
7102059 TTGAAAGATT
* * * *
7102069 TTCGAGTTCGATTACATTCAGCTCAAAGGCACATCATTTGCAACATAGCTCATGGCAAGAAGGGC
1 TTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCAAGGCAAGAAGGGT
*
7102134 TATTTGCCAACAAAAGACC
66 TATCTGCCAACAAAAGACC
*
7102153 TTCGAGTTCTATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCAAGGCAA-AATGGG
1 TTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCAAGGCAAGAA-GGG
* **
7102217 CTATCTG-C--C-AAAGATA
65 TTATCTGCCAACAAAAGACC
* * * * * *
7102233 TTCGAGTTTGATTACACTCAGTTCAAAGGCACATCATTTGCAGTATAGCTCAATGAAAGAAAGGT
1 TTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCAAGGCAAGAAGGGT
*
7102298 TATCTACCAACAAAAGACC
66 TATCTGCCAACAAAAGACC
**
7102317 TTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAATATAGCTCAAGGCAAGAAGGGT
1 TTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCAAGGCAAGAAGGGT
*
7102382 TATTTGCCAACAAAAGACC
66 TATCTGCCAACAAAAGACC
* * * * *
7102401 TTCGAGTTCGATTACACTCAGCTCAAAGACACATCATTTGTAACATAGGTCAAGGAAAGAAGGGT
1 TTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCAAGGCAAGAAGGGT
* *
7102466 TATTTGCCAACAAAAAACC
66 TATCTGCCAACAAAAGACC
* * * * *
7102485 TTCGAGTTCGATTACACTCAGCTTAAAGACACATCATTTGCAACATAGCTGAAGGAAAGAAGGGT
1 TTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCAAGGCAAGAAGGGT
* *
7102550 TATTTG-CAACAAATGACC
66 TATCTGCCAACAAAAGACC
* * *
7102568 TTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTACAGCATAGCTCAATGCAAGAAGGGC
1 TTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCAAGGCAAGAAGGGT
*
7102633 TATTTG-C--C-AAAGACC
66 TATCTGCCAACAAAAGACC
* *
7102648 TTCGAGTTCGATTACACTCAGCTCAAAGGCACATTATTTGCAACATAGCTCAAGGCAAGAAGGGT
1 TTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCAAGGCAAGAAGGGT
*
7102713 TATCTTCCAACAAAAGACC
66 TATCTGCCAACAAAAGACC
* * * * *
7102732 TTCGAGTTTGATTACACTTAGCTCAAATGCACATAATTTCCAGCATAGCTCAAGGCAAGAAGGGT
1 TTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCAAGGCAAGAAGGGT
* *
7102797 TATCTACCAATAAAAGACC
66 TATCTGCCAACAAAAGACC
* * * * *
7102816 TTCGAGTTCTATTACACTCAGCTCAAAGGTACATCATTTACAGCATAGCTTAAGGCAAGAAGGGC
1 TTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCAAGGCAAGAAGGGT
* *
7102881 TATCTGTCAACCAAAGACC
66 TATCTGCCAACAAAAGACC
* * * * * *
7102900 TTCAAGTTCGATTATACTCAGATCAAAGGCACATCATTTACAGTATAACTCAAGGCAAGAAGGGT
1 TTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCAAGGCAAGAAGGGT
**** *
7102965 TATCTATTGAC-CAAGACC
66 TATCTGCCAACAAAAGACC
* ** * * * *
7102983 TTCGAGTTCGATTACATTCAGCTCAAAGGTGCATCATTTGCAGCATAGCTTAAGGCGAGAATGGC
1 TTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCAAGGCAAGAAGGGT
*
7103048 TATCTGCCAACCAAAGACC
66 TATCTGCCAACAAAAGACC
* * *
7103067 TTCGAGTTCGATTACACTCAGCTCAAAGGCACATTATTTGCAGCATAACTTAAGGCGAA-AAGGG
1 TTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCAAGGC-AAGAAGGG
7103131 TTATCTGCCAACAAAAGACC
65 TTATCTGCCAACAAAAGACC
* * * * *
7103151 TTCGAGTTCGATTACACTCATCTTAAAGACACATCATTTACAGCATAACTCAAGGCAAGAAGGGT
1 TTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCAAGGCAAGAAGGGT
* * *
7103216 TATCTGTCGAC-CAAGACC
66 TATCTGCCAACAAAAGACC
* *
7103234 TTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTACAGCATAGCTCAAGGCAATAAGGGT
1 TTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCAAGGCAAGAAGGGT
* * *
7103299 TATTTGCCATC-AAAGACT
66 TATCTGCCAACAAAAGACC
* * * * ** * ** * * *
7103317 TTCGAGTTCGATTACATTCAACTCAAATGCATATCCATTTTATAACATAAATCAAGTCTATAAGG
1 TTCGAGTTCGATTACACTCAGCTCAAAGGCACAT-CA-TTTGCAGCATAGCTCAAGGCAAGAAGG
***
7103382 GTTATCTATTAAC-AAAGACC
64 GTTATCTGCCAACAAAAGACC
* * *
7103402 TTCAAATTCGATTACACTCAGCTCAAAGGCACATCATTTACAGCATAGCTCAAGGCAAGAAGGGT
1 TTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCAAGGCAAGAAGGGT
7103467 TATCTGCCAACAAAAGACAAAAAGACC
66 TATCTG-C--C---A-AC-AAAAGACC
* *
7103494 TTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCATCATAGCTTAAGGCAAGAAGGGT
1 TTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCAAGGCAAGAAGGGT
* * *
7103559 TATTTGTCACCAAAAGACC
66 TATCTGCCAACAAAAGACC
* * * * * * * *
7103578 TTCGAGTTCTATTACACTCAGCTCAAAGGCACATCATTTACAGTATAGATTAAGGCAAAAAAGGA
1 TTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCAAGGCAAGAAGGGT
*
7103643 TATCTGCCACCAAAAGACC
66 TATCTGCCAACAAAAGACC
* * * * *
7103662 TTCGAGGTCGATTACACTCAGCTCAAAGGCATACCATTTGTAGCATAGCTCAAGGAAAGAAGGGT
1 TTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCAAGGCAAGAAGGGT
* *
7103727 TATCTACCAATAAAAGACC
66 TATCTGCCAACAAAAGACC
* * * * * *
7103746 TTCAAGTTCGATTACACTCAGCTCAAAGACACATCATTTTTACAGCATAACTCAAGGCGAGAAGT
1 TTCGAGTTCGATTACACTCAGCTCAAAGGCACATCA--TTTGCAGCATAGCTCAAGGCAAGAAGG
* *
7103811 GTTATCTGTCAA-TAAAGACC
64 GTTATCTGCCAACAAAAGACC
*
7103831 TTCGAGCTCGAT
1 TTCGAGTTCGAT
7103843 GACATGTAAA
Statistics
Matches: 1447, Mismatches: 217, Indels: 51
0.84 0.13 0.03
Matches are distributed among these distances:
80 134 0.09
81 6 0.00
83 281 0.19
84 836 0.58
85 82 0.06
86 32 0.02
89 2 0.00
90 2 0.00
92 72 0.05
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.25
Consensus pattern (84 bp):
TTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCAAGGCAAGAAGGGT
TATCTGCCAACAAAAGACC
Found at i:7102628 original size:251 final size:252
Alignment explanation
Indices: 7102069--7103842 Score: 2077
Period size: 251 Copynumber: 7.0 Consensus size: 252
7102059 TTGAAAGATT
* * * *
7102069 TTCGAGTTCGATTACATTCAGCTCAAAGGCACATCATTTGCAACATAGCTCATGGCAAGAAGGGC
1 TTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTACAGCATAGCTCAAGGCAAGAAGGGC
* *
7102134 TATTTGCCAACAAAAGACCTTCGAGTTCTATTACACTCAGCTCAAAGGCACATCATTTGCAGCAT
66 TATCTGCCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCAT
* ** * *
7102199 AGCTCAAGGCAA-AATGGGCTATCTG-C--C-AAAGATATTCGAGTTTGATTACACTCAGTTCAA
131 AGCTCAAGGCAAGAA-GGGTTATCTGCCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAA
* * * * * *
7102259 AGGCACATCATTTGCAGTATAGCTCAATGAAAGAAAGGTTATCTACCAACAAAAGACC
195 AGGCACATCATTTGCAGCATAGCTCAAGGCAAGAAGGGTTATTTGCCAACAAAAGACC
* ** *
7102317 TTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAATATAGCTCAAGGCAAGAAGGGT
1 TTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTACAGCATAGCTCAAGGCAAGAAGGGC
* * * *
7102382 TATTTGCCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGACACATCATTTGTAACAT
66 TATCTGCCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCAT
* * * * *
7102447 AGGTCAAGGAAAGAAGGGTTATTTGCCAACAAAAAACCTTCGAGTTCGATTACACTCAGCTTAAA
131 AGCTCAAGGCAAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAA
* * * * *
7102512 GACACATCATTTGCAACATAGCTGAAGGAAAGAAGGGTTATTTG-CAACAAATGACC
196 GGCACATCATTTGCAGCATAGCTCAAGGCAAGAAGGGTTATTTGCCAACAAAAGACC
*
7102568 TTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTACAGCATAGCTCAATGCAAGAAGGGC
1 TTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTACAGCATAGCTCAAGGCAAGAAGGGC
* * *
7102633 TATTTG-C--C-AAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATTATTTGCAACAT
66 TATCTGCCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCAT
* * *
7102694 AGCTCAAGGCAAGAAGGGTTATCTTCCAACAAAAGACCTTCGAGTTTGATTACACTTAGCTCAAA
131 AGCTCAAGGCAAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAA
* * * * * *
7102759 TGCACATAATTTCCAGCATAGCTCAAGGCAAGAAGGGTTATCTACCAATAAAAGACC
196 GGCACATCATTTGCAGCATAGCTCAAGGCAAGAAGGGTTATTTGCCAACAAAAGACC
* * *
7102816 TTCGAGTTCTATTACACTCAGCTCAAAGGTACATCATTTACAGCATAGCTTAAGGCAAGAAGGGC
1 TTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTACAGCATAGCTCAAGGCAAGAAGGGC
* * * * * * *
7102881 TATCTGTCAACCAAAGACCTTCAAGTTCGATTATACTCAGATCAAAGGCACATCATTTACAGTAT
66 TATCTGCCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCAT
* **** * *
7102946 AACTCAAGGCAAGAAGGGTTATCTATTGAC-CAAGACCTTCGAGTTCGATTACATTCAGCTCAAA
131 AGCTCAAGGCAAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAA
** * * * * * *
7103010 GGTGCATCATTTGCAGCATAGCTTAAGGCGAGAATGGCTATCTGCCAACCAAAGACC
196 GGCACATCATTTGCAGCATAGCTCAAGGCAAGAAGGGTTATTTGCCAACAAAAGACC
* * * *
7103067 TTCGAGTTCGATTACACTCAGCTCAAAGGCACATTATTTGCAGCATAACTTAAGGCGAA-AAGGG
1 TTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTACAGCATAGCTCAAGGC-AAGAAGGG
* * * * *
7103131 TTATCTGCCAACAAAAGACCTTCGAGTTCGATTACACTCATCTTAAAGACACATCATTTACAGCA
65 CTATCTGCCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCA
* * * *
7103196 TAACTCAAGGCAAGAAGGGTTATCTGTCGAC-CAAGACCTTCGAGTTCGATTACACTCAGCTCAA
130 TAGCTCAAGGCAAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAA
* * * *
7103260 AGGCACATCATTTACAGCATAGCTCAAGGCAATAAGGGTTATTTGCCATC-AAAGACT
195 AGGCACATCATTTGCAGCATAGCTCAAGGCAAGAAGGGTTATTTGCCAACAAAAGACC
* * * * * * ** * * *
7103317 TTCGAGTTCGATTACATTCAACTCAAATGCATATCCATTTTATAACATAAATCAAGTCTATAAGG
1 TTCGAGTTCGATTACACTCAGCTCAAAGGCACAT-CA-TTTACAGCATAGCTCAAGGCAAGAAGG
* *** * * *
7103382 GTTATCTATTAAC-AAAGACCTTCAAATTCGATTACACTCAGCTCAAAGGCACATCATTTACAGC
64 GCTATCTGCCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGC
7103446 ATAGCTCAAGGCAAGAAGGGTTATCTGCCAACAAAAGACAAAAAGACCTTCGAGTTCGATTACAC
129 ATAGCTCAAGGCAAGAAGGGTTATCTG-C--C---A-AC-AAAAGACCTTCGAGTTCGATTACAC
* * * *
7103511 TCAGCTCAAAGGCACATCATTTGCATCATAGCTTAAGGCAAGAAGGGTTATTTGTCACCAAAAGA
186 TCAGCTCAAAGGCACATCATTTGCAGCATAGCTCAAGGCAAGAAGGGTTATTTGCCAACAAAAGA
7103576 CC
251 CC
* * * * * * *
7103578 TTCGAGTTCTATTACACTCAGCTCAAAGGCACATCATTTACAGTATAGATTAAGGCAAAAAAGGA
1 TTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTACAGCATAGCTCAAGGCAAGAAGGGC
* * * * *
7103643 TATCTGCCACCAAAAGACCTTCGAGGTCGATTACACTCAGCTCAAAGGCATACCATTTGTAGCAT
66 TATCTGCCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCAT
* * * *
7103708 AGCTCAAGGAAAGAAGGGTTATCTACCAATAAAAGACCTTCAAGTTCGATTACACTCAGCTCAAA
131 AGCTCAAGGCAAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAA
* * * * * * * *
7103773 GACACATCATTTTTACAGCATAACTCAAGGCGAGAAGTGTTATCTGTCAA-TAAAGACC
196 GGCACATCA--TTTGCAGCATAGCTCAAGGCAAGAAGGGTTATTTGCCAACAAAAGACC
*
7103831 TTCGAGCTCGAT
1 TTCGAGTTCGAT
7103843 GACATGTAAA
Statistics
Matches: 1310, Mismatches: 189, Indels: 49
0.85 0.12 0.03
Matches are distributed among these distances:
247 142 0.11
248 217 0.17
249 4 0.00
250 37 0.03
251 440 0.34
252 207 0.16
253 18 0.01
254 33 0.03
257 1 0.00
258 2 0.00
259 27 0.02
260 147 0.11
261 35 0.03
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.25
Consensus pattern (252 bp):
TTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTACAGCATAGCTCAAGGCAAGAAGGGC
TATCTGCCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCAT
AGCTCAAGGCAAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAA
GGCACATCATTTGCAGCATAGCTCAAGGCAAGAAGGGTTATTTGCCAACAAAAGACC
Found at i:7104739 original size:37 final size:37
Alignment explanation
Indices: 7104640--7104874 Score: 210
Period size: 37 Copynumber: 6.6 Consensus size: 37
7104630 ATAATATAAC
* * *
7104640 TATATAATAAATAGTTTTTTAAAACA-CTTTGAAAACT
1 TATATAATATATAG-TTTTAAAAACATTTTTGAAAACT
* * * *
7104677 GATATAA-GTAT-GTTTTTAAAGCA-TTTTGAAAAACT
1 TATATAATATATAGTTTTAAAAACATTTTTG-AAAACT
**
7104712 TATATAATATATAGTTTTAAAAACATTTTTGAAAAAG
1 TATATAATATATAGTTTTAAAAACATTTTTGAAAACT
7104749 TATATAATATATAGTTTTAAAAACATTTTTTTGAAAACT
1 TATATAATATATAGTTTTAAAAACA--TTTTTGAAAACT
*
7104788 TATAT-A-ATAT--TTTTAAAATCATTTTTGAAAAC-
1 TATATAATATATAGTTTTAAAAACATTTTTGAAAACT
* * *
7104820 TATATGATATATAGTTTTGAAAAC-TTTTT-TAAA--
1 TATATAATATATAGTTTTAAAAACATTTTTGAAAACT
*
7104853 -ATATAATATATAATTTTAAAAA
1 TATATAATATATAGTTTTAAAAA
7104875 AATATTTTTG
Statistics
Matches: 168, Mismatches: 20, Indels: 25
0.79 0.09 0.12
Matches are distributed among these distances:
32 24 0.14
33 12 0.07
34 21 0.12
35 28 0.17
36 13 0.08
37 49 0.29
38 6 0.04
39 15 0.09
ACGTcount: A:0.45, C:0.05, G:0.07, T:0.43
Consensus pattern (37 bp):
TATATAATATATAGTTTTAAAAACATTTTTGAAAACT
Found at i:7104836 original size:71 final size:75
Alignment explanation
Indices: 7104700--7104849 Score: 211
Period size: 71 Copynumber: 2.0 Consensus size: 75
7104690 TTTTAAAGCA
*
7104700 TTTTGAAAAACTTATATAATATATAGTTTTAAAAACATTTTTGAAAAAGTATATAATATATAGTT
1 TTTTGAAAAACTTATATAATATATA-TTTTAAAAACATTTTTGAAAAACTATATAATATATAGTT
7104765 TTAAAAACATTT
65 TTAAAAAC-TTT
* *
7104777 TTTTG-AAAACTTATAT-A-ATAT-TTTTAAAATCATTTTTG-AAAACTATATGATATATAGTTT
1 TTTTGAAAAACTTATATAATATATATTTTAAAAACATTTTTGAAAAACTATATAATATATAGTTT
*
7104837 TGAAAACTTT
66 TAAAAACTTT
7104847 TTT
1 TTT
7104850 AAAATATAAT
Statistics
Matches: 69, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
70 6 0.09
71 26 0.38
72 16 0.23
74 4 0.06
75 1 0.01
76 11 0.16
77 5 0.07
ACGTcount: A:0.43, C:0.05, G:0.07, T:0.46
Consensus pattern (75 bp):
TTTTGAAAAACTTATATAATATATATTTTAAAAACATTTTTGAAAAACTATATAATATATAGTTT
TAAAAACTTT
Found at i:7104902 original size:71 final size:70
Alignment explanation
Indices: 7104713--7104903 Score: 205
Period size: 71 Copynumber: 2.7 Consensus size: 70
7104703 TGAAAAACTT
* * *
7104713 ATATAATATATAGTTTTAAAAACATTTTTGAAAAAGTATATAATATATAGTTTTAAAAACATTTT
1 ATATAATATATAATTTTAAAAATATTTTTG-AAAACTATATAATATATAGTTTTAAAAACA-TTT
7104778 TTTGAAA
64 TTTGAAA
* * *
7104785 ACT-T-ATATA-ATATTTTTAAAATCATTTTTGAAAACTATATGATATATAGTTTTGAAAAC-TT
1 A-TATAATATATA-ATTTTAAAAAT-ATTTTTGAAAACTATATAATATATAGTTTTAAAAACATT
7104846 TTTT-AAA
63 TTTTGAAA
7104853 ATATAATATATAATTTTAAAAAAATATTTTTGAAATA-TATATATATATATA
1 ATATAATATATAATTTT--AAAAATATTTTTGAAA-ACTATATA-ATATATA
7104904 TTATATATTT
Statistics
Matches: 101, Mismatches: 8, Indels: 21
0.78 0.06 0.16
Matches are distributed among these distances:
67 1 0.01
68 5 0.05
69 16 0.16
70 17 0.17
71 52 0.51
72 9 0.09
73 1 0.01
ACGTcount: A:0.47, C:0.03, G:0.05, T:0.45
Consensus pattern (70 bp):
ATATAATATATAATTTTAAAAATATTTTTGAAAACTATATAATATATAGTTTTAAAAACATTTTT
TGAAA
Found at i:7104921 original size:31 final size:30
Alignment explanation
Indices: 7104876--7104934 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 30
7104866 TTTTAAAAAA
*
7104876 ATATTTTTGAAATATATATATATATATATTAT
1 ATATTTTAGAAATATATATAT-TAT-TATTAT
7104908 ATATTTTAG-AATATATATATTATTATT
1 ATATTTTAGAAATATATATATTATTATT
7104935 TTTACTTTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 4 0.15
30 3 0.12
31 11 0.42
32 8 0.31
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.54
Consensus pattern (30 bp):
ATATTTTAGAAATATATATATTATTATTAT
Found at i:7106130 original size:5 final size:5
Alignment explanation
Indices: 7106120--7106244 Score: 55
Period size: 5 Copynumber: 24.0 Consensus size: 5
7106110 CTTTTTTCTA
* * *
7106120 TTTAT TTTAT TTTA- TTT-T TTTGT TTTGT TTCTAT TTTTT TTATAT TTTAT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TT-TAT TTTAT TT-TAT TTTAT
* * *
7106170 TTCTAT TATT-T TTTAT GTTAT TTGTCT CCATTTAT ATATAT TTTA- TTTAT
1 TT-TAT T-TTAT TTTAT TTTAT TT-TAT ---TTTAT -TTTAT TTTAT TTTAT
7106220 TTTA- -TTAT TATTAT TTATAT TTTAT
1 TTTAT TTTAT T-TTAT TT-TAT TTTAT
7106245 ATTTTCTTTC
Statistics
Matches: 95, Mismatches: 9, Indels: 32
0.70 0.07 0.24
Matches are distributed among these distances:
3 3 0.03
4 12 0.13
5 45 0.47
6 30 0.32
7 1 0.01
8 2 0.02
9 2 0.02
ACGTcount: A:0.20, C:0.04, G:0.03, T:0.73
Consensus pattern (5 bp):
TTTAT
Found at i:7106159 original size:22 final size:23
Alignment explanation
Indices: 7106131--7106188 Score: 84
Period size: 22 Copynumber: 2.6 Consensus size: 23
7106121 TTATTTTATT
*
7106131 TTATTTTTT-TGTTTTGTTTCTA
1 TTATTTTTTATGTTTTATTTCTA
*
7106153 TT-TTTTTTATATTTTATTTCTA
1 TTATTTTTTATGTTTTATTTCTA
7106175 TTATTTTTTATGTT
1 TTATTTTTTATGTT
7106189 ATTTGTCTCC
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 6 0.19
22 15 0.48
23 10 0.32
ACGTcount: A:0.14, C:0.03, G:0.05, T:0.78
Consensus pattern (23 bp):
TTATTTTTTATGTTTTATTTCTA
Found at i:7106223 original size:20 final size:20
Alignment explanation
Indices: 7106204--7106247 Score: 60
Period size: 18 Copynumber: 2.4 Consensus size: 20
7106194 TCTCCATTTA
7106204 TATATATT-TTATTTAT-TT
1 TATATATTATTATTTATATT
7106222 TAT-TATTATTATTTATATT
1 TATATATTATTATTTATATT
7106241 T-TATATT
1 TATATATT
7106248 TTCTTTCTCC
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
17 4 0.17
18 12 0.52
19 7 0.30
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (20 bp):
TATATATTATTATTTATATT
Found at i:7106225 original size:46 final size:44
Alignment explanation
Indices: 7106120--7106225 Score: 115
Period size: 46 Copynumber: 2.3 Consensus size: 44
7106110 CTTTTTTCTA
* * * *
7106120 TTTATTTTATTTTATTTTTTTGTTTTGTTTCTATTTTTTTTATAT
1 TTTA-TTTATTTTATTTTTTTGTTTTGTCTCCATTTTATATATAT
* *
7106165 TTTATTTCTATTATTTTTTATGTTATTTGTCTCCA-TTTATATATAT
1 TTTATTTATTTTATTTTTT-TG-T-TTTGTCTCCATTTTATATATAT
7106211 TTTATTTATTTTATT
1 TTTATTTATTTTATT
7106226 ATTATTATTT
Statistics
Matches: 50, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
44 13 0.26
45 6 0.12
46 23 0.46
47 8 0.16
ACGTcount: A:0.18, C:0.05, G:0.04, T:0.74
Consensus pattern (44 bp):
TTTATTTATTTTATTTTTTTGTTTTGTCTCCATTTTATATATAT
Found at i:7106233 original size:14 final size:13
Alignment explanation
Indices: 7106208--7106249 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 13
7106198 CATTTATATA
7106208 TATTTTATTTATTT
1 TATTTTA-TTATTT
7106222 TATTATTATTATTT
1 TATT-TTATTATTT
7106236 ATATTTTA-TATTT
1 -TATTTTATTATTT
7106249 T
1 T
7106250 CTTTCTCCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
12 1 0.04
13 5 0.19
14 13 0.50
15 7 0.27
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (13 bp):
TATTTTATTATTT
Found at i:7106389 original size:2 final size:2
Alignment explanation
Indices: 7106384--7106428 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
7106374 TTTTTTCTAT
7106384 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7106426 TA T
1 TA T
7106429 TTCTTATTTA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7107484 original size:3 final size:3
Alignment explanation
Indices: 7107478--7107540 Score: 67
Period size: 3 Copynumber: 21.0 Consensus size: 3
7107468 ACCCATTTTT
*
7107478 TTA TTA TTGA -TA TTA TTA TTT TTA TTA TT- TTA TTTA TTA TTA TTA
1 TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA
**
7107523 TTA TTA AAA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA
7107541 CAAACAGGCT
Statistics
Matches: 50, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
2 3 0.06
3 43 0.86
4 4 0.08
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:7107500 original size:21 final size:20
Alignment explanation
Indices: 7107475--7107539 Score: 76
Period size: 21 Copynumber: 3.1 Consensus size: 20
7107465 TTTACCCATT
7107475 TTTTTATTATTGATATTATTA
1 TTTTTATTATT-ATATTATTA
*
7107496 TTTTTATTATTTTATTTATTA
1 TTTTTATTATTATA-TTATTA
* *
7107517 TTATTATTATTAAAATTATTA
1 TTTTTATTATT-ATATTATTA
7107538 TT
1 TT
7107540 ACAAACAGGC
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
20 2 0.05
21 35 0.92
22 1 0.03
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.68
Consensus pattern (20 bp):
TTTTTATTATTATATTATTA
Found at i:7109132 original size:20 final size:20
Alignment explanation
Indices: 7109107--7109149 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
7109097 CTATTTTATA
7109107 AATTATATATTAATTGTTTT
1 AATTATATATTAATTGTTTT
* * *
7109127 AATTATTTATTTATTTTTTT
1 AATTATATATTAATTGTTTT
7109147 AAT
1 AAT
7109150 ATCGAAGAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (20 bp):
AATTATATATTAATTGTTTT
Found at i:7109159 original size:121 final size:116
Alignment explanation
Indices: 7109002--7109240 Score: 273
Period size: 121 Copynumber: 2.0 Consensus size: 116
7108992 TATTTTAATC
* * * * *
7109002 TTGTTTTAGTATTTATTTATTTTTCAATATTAAG-AAAGGGCAGTCTTAAAACAATTGGATGTCC
1 TTGTTTTAGTATTTATTTATTTTTCAATATGAAGAAAAGAGCAGTCTTAAAACAACTAGAAGTCC
* * *
7109066 ATTTTTTTATATTTTTAAATAAATAAATATCCTATTTTATAAATTATATATTAA
66 -TTTTCTGATATTTTTAAATAAATAAATATCCTA-TTTATAAATT-TATATAAA
* * * ** *
7109120 TTGTTTTAATTATTTATTTATTTTTTTAATATCGAAGAAAAGAGCTGTCTTAAGGCACCTAGAAG
1 TTGTTTT-AGTATTTATTTA-TTTTTCAATAT-GAAGAAAAGAGCAGTCTTAAAACAACTAGAAG
**
7109185 TCCTTTTCTGATATTTTTAAATAAATAAATATTTTATTTATAAATTTATATAAA
63 TCCTTTTCTGATATTTTTAAATAAATAAATATCCTATTTATAAATTTATATAAA
7109239 TT
1 TT
7109241 AATAAATTTA
Statistics
Matches: 101, Mismatches: 16, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
118 7 0.07
119 20 0.20
120 20 0.20
121 32 0.32
122 22 0.22
ACGTcount: A:0.36, C:0.07, G:0.09, T:0.48
Consensus pattern (116 bp):
TTGTTTTAGTATTTATTTATTTTTCAATATGAAGAAAAGAGCAGTCTTAAAACAACTAGAAGTCC
TTTTCTGATATTTTTAAATAAATAAATATCCTATTTATAAATTTATATAAA
Found at i:7111328 original size:8 final size:7
Alignment explanation
Indices: 7111304--7111345 Score: 50
Period size: 7 Copynumber: 6.0 Consensus size: 7
7111294 TTTTCATACA
7111304 TGCA-TT
1 TGCATTT
7111310 TGCATTT
1 TGCATTT
7111317 TGCATCTT
1 TGCAT-TT
7111325 TGCATTT
1 TGCATTT
* *
7111332 TTCATTG
1 TGCATTT
7111339 TGCATTT
1 TGCATTT
7111346 ATACTTTTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
6 4 0.13
7 19 0.63
8 7 0.23
ACGTcount: A:0.14, C:0.17, G:0.14, T:0.55
Consensus pattern (7 bp):
TGCATTT
Found at i:7111328 original size:15 final size:14
Alignment explanation
Indices: 7111304--7111345 Score: 50
Period size: 15 Copynumber: 3.0 Consensus size: 14
7111294 TTTTCATACA
7111304 TGCA-TTTGCATTT
1 TGCATTTTGCATTT
7111317 TGCATCTTTGCATTT
1 TGCAT-TTTGCATTT
* *
7111332 TTCATTGTGCATTT
1 TGCATTTTGCATTT
7111346 ATACTTTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 4 0.16
14 8 0.32
15 13 0.52
ACGTcount: A:0.14, C:0.17, G:0.14, T:0.55
Consensus pattern (14 bp):
TGCATTTTGCATTT
Found at i:7111421 original size:12 final size:12
Alignment explanation
Indices: 7111404--7111431 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
7111394 ACATTCACAT
7111404 ATTTACATTTGC
1 ATTTACATTTGC
7111416 ATTTACATTTGC
1 ATTTACATTTGC
7111428 ATTT
1 ATTT
7111432 TTTACGTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.25, C:0.14, G:0.07, T:0.54
Consensus pattern (12 bp):
ATTTACATTTGC
Found at i:7113429 original size:14 final size:14
Alignment explanation
Indices: 7113404--7113447 Score: 72
Period size: 14 Copynumber: 3.1 Consensus size: 14
7113394 GCAAAGAAAG
7113404 AAGAAG-AAAAAAA
1 AAGAAGAAAAAAAA
7113417 AAGAAGAAAAAAAA
1 AAGAAGAAAAAAAA
7113431 AAGAAGAAAAATAAA
1 AAGAAGAAAAA-AAA
7113446 AA
1 AA
7113448 AAAAAAGGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.21
14 18 0.62
15 5 0.17
ACGTcount: A:0.84, C:0.00, G:0.14, T:0.02
Consensus pattern (14 bp):
AAGAAGAAAAAAAA
Found at i:7113460 original size:14 final size:13
Alignment explanation
Indices: 7113407--7113453 Score: 60
Period size: 13 Copynumber: 3.5 Consensus size: 13
7113397 AAGAAAGAAG
*
7113407 AAGAAAAAAAAAG
1 AAGAAAAAAAAAA
7113420 AAGAAAAAAAAAA
1 AAGAAAAAAAAAA
7113433 GAAGAAAAATAAAAA
1 -AAGAAAAA-AAAAA
7113448 AA-AAAA
1 AAGAAAA
7113454 GGAAAAAGGG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
13 16 0.52
14 10 0.32
15 5 0.16
ACGTcount: A:0.87, C:0.00, G:0.11, T:0.02
Consensus pattern (13 bp):
AAGAAAAAAAAAA
Found at i:7115946 original size:114 final size:114
Alignment explanation
Indices: 7115745--7115968 Score: 376
Period size: 114 Copynumber: 2.0 Consensus size: 114
7115735 GTGCCACGTT
* *
7115745 CTCATAGTAGAAATAAGGAGACTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTG
1 CTCATAGTAGAAATAAAGAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTG
* * * *
7115810 GTTTGGTATGAACCCCAAAACCAATCATTATATTTGAAAGATGAATTTG
66 GTTCGGTAGGAACCCCAAAACCAATCATTAGAATTGAAAGATGAATTTG
7115859 CTCATAGTAGAAATAAAGAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTG
1 CTCATAGTAGAAATAAAGAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTG
* *
7115924 GTTCGGTAGGAACCCCAGAACCAATCATTGGAATTGAAAGATGAA
66 GTTCGGTAGGAACCCCAAAACCAATCATTAGAATTGAAAGATGAA
7115969 CTGCATGATC
Statistics
Matches: 102, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
114 102 1.00
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (114 bp):
CTCATAGTAGAAATAAAGAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTG
GTTCGGTAGGAACCCCAAAACCAATCATTAGAATTGAAAGATGAATTTG
Found at i:7118563 original size:22 final size:22
Alignment explanation
Indices: 7118537--7118616 Score: 115
Period size: 22 Copynumber: 3.6 Consensus size: 22
7118527 TACATCTACA
7118537 CTCTTCAAAGATGATAGATTCT
1 CTCTTCAAAGATGATAGATTCT
*
7118559 CTCTTCAAAGATGATAAATTCT
1 CTCTTCAAAGATGATAGATTCT
* *
7118581 CTTTTTAAAGATGATAGATTCT
1 CTCTTCAAAGATGATAGATTCT
* *
7118603 CTTTTCGAAGATGA
1 CTCTTCAAAGATGA
7118617 AAGTTTTATT
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 52 1.00
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.39
Consensus pattern (22 bp):
CTCTTCAAAGATGATAGATTCT
Found at i:7120128 original size:113 final size:113
Alignment explanation
Indices: 7119353--7120115 Score: 1163
Period size: 113 Copynumber: 6.8 Consensus size: 113
7119343 TCTTAAAACA
* * *
7119353 TTTCCAGA-AAGGTTCATAATGAGAAGAACTCATATGAAGAAGGAAGAAGAAATTCATAATGAGA
1 TTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGA
7119417 AGAGCTTGTTCAACCTTTTGCTCAAATCCATCACTCGATGGATCAGCT
66 AGAGCTTGTTCAACCTTTTGCTCAAATCCATCACTCGATGGATCAGCT
* *
7119465 TTTCCAGAGAAAGTTCATAATGAGAAGAACTCTTCTGAAGAATGAAGAAGAAGTTCATAATGAGA
1 TTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGA
*
7119530 AGAGTTTGTTCAACCTTTTGCTCAAATCCATCACTCGATGGATCAGCT
66 AGAGCTTGTTCAACCTTTTGCTCAAATCCATCACTCGATGGATCAGCT
7119578 TTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGA
1 TTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGA
* *
7119643 AGAGCTTGTTCAACATTTTGCTCAAATCCATCACTTGATGGATCAGCT
66 AGAGCTTGTTCAACCTTTTGCTCAAATCCATCACTCGATGGATCAGCT
*
7119691 TTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAAGAAGAAGAAGTTCATAATGAGA
1 TTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGA
7119756 AGAGCTTGTTCAACCTTTTGCTCAAATCCATCACTCGATGGATCAGCT
66 AGAGCTTGTTCAACCTTTTGCTCAAATCCATCACTCGATGGATCAGCT
*
7119804 TTTCCAGAGATAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGA
1 TTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGA
** * ** * * * * * *
7119869 AGAATTTGTTCAACCTTTTGTTTGAATTCATCATTTGATGGATTAACA
66 AGAGCTTGTTCAACCTTTTGCTCAAATCCATCACTCGATGGATCAGCT
* * * *
7119917 TTGCCAG-GTAGAGTTCATAATGAGAAGAACTCGTCTGAAGAAGGAAGAAGAAATTCATAATGAG
1 TTTCCAGAG-AAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAG
** * * ** * *
7119981 AAGAATTTGTTTAA-CTTTTAGTTTGAATTCATCACTCGATGGATCAACT
65 AAGAGCTTGTTCAACCTTTT-GCTCAAATCCATCACTCGATGGATCAGCT
* *
7120030 TTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATAAAA
1 TTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGA
*
7120095 AGAGCTTGTTCGACCTTTTGC
66 AGAGCTTGTTCAACCTTTTGC
7120116 ATGACTCTAT
Statistics
Matches: 599, Mismatches: 47, Indels: 9
0.91 0.07 0.01
Matches are distributed among these distances:
112 14 0.02
113 579 0.97
114 6 0.01
ACGTcount: A:0.37, C:0.15, G:0.20, T:0.28
Consensus pattern (113 bp):
TTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGA
AGAGCTTGTTCAACCTTTTGCTCAAATCCATCACTCGATGGATCAGCT
Found at i:7120461 original size:3 final size:3
Alignment explanation
Indices: 7120455--7120514 Score: 61
Period size: 3 Copynumber: 20.0 Consensus size: 3
7120445 CCCATTTTTT
*
7120455 TTA TTA TTGA -TA ATA TTA TTA TTA TT- TTA TTTA TTA TTA TTA TTA
1 TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA
**
7120500 TTA AAA TTA TTA TTA
1 TTA TTA TTA TTA TTA
7120515 CAAACAGGCT
Statistics
Matches: 48, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
2 3 0.06
3 41 0.85
4 4 0.08
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:7120509 original size:30 final size:30
Alignment explanation
Indices: 7120448--7120510 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 30
7120438 TTTTTTACCC
* **
7120448 ATTTTTTTTATTATTGATAATATTATTATT
1 ATTTTATTTATTATTGATAATATTAAAATT
*
7120478 ATTTTATTTATTATT-ATTATTATTAAAATT
1 ATTTTATTTATTATTGA-TAATATTAAAATT
7120508 ATT
1 ATT
7120511 ATTACAAACA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 1 0.04
30 27 0.96
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (30 bp):
ATTTTATTTATTATTGATAATATTAAAATT
Found at i:7122100 original size:20 final size:19
Alignment explanation
Indices: 7122075--7122116 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
7122065 ATATTTTATA
7122075 AATTATATATTAATTGTTTT
1 AATTATATATTAATT-TTTT
* *
7122095 AATTATTTATTTATTTTTT
1 AATTATATATTAATTTTTT
7122114 AAT
1 AAT
7122117 ATCGAAGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (19 bp):
AATTATATATTAATTTTTT
Found at i:7122107 original size:119 final size:117
Alignment explanation
Indices: 7121971--7122207 Score: 298
Period size: 120 Copynumber: 2.0 Consensus size: 117
7121961 ATTTTAATCA
* * * * *
7121971 TGTTTTAATATTTATTTATTTTTCAATAT-TAAGAAAGGA-CAGTCTTAAAATAACTGGATGTCC
1 TGTTTTAATATTTATTTATTTTTCAATATCGAAGAAAAGAGCAGTCTTAAAACAACTAGAAGT-C
*
7122034 ATTTTCTGATATTTTTAAATAAATAAAAATCATATTTTATAAATTATATATTAAT
65 ATTTTCTGATATTTTTAAATAAATAAAAATCATA-TTTATAAATT-TATATAAAT
* * ** *
7122089 TGTTTTAATTATTTATTTATTTTTTAATATCGAAGAAAAGAGCTGTCTTAAGGCACCTAGAAGTC
1 TGTTTTAA-TATTTATTTATTTTTCAATATCGAAGAAAAGAGCAGTCTTAAAACAACTAGAAGTC
* **
7122154 ATTTTCTGATATTTTTAAATAAATAAATATTTTATTTATAAATTTATATAAAT
65 ATTTTCTGATATTTTTAAATAAATAAAAATCATATTTATAAATTTATATAAAT
7122207 T
1 T
7122208 AATAAATTTA
Statistics
Matches: 102, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
118 17 0.17
119 30 0.29
120 40 0.39
121 15 0.15
ACGTcount: A:0.38, C:0.07, G:0.08, T:0.46
Consensus pattern (117 bp):
TGTTTTAATATTTATTTATTTTTCAATATCGAAGAAAAGAGCAGTCTTAAAACAACTAGAAGTCA
TTTTCTGATATTTTTAAATAAATAAAAATCATATTTATAAATTTATATAAAT
Found at i:7124891 original size:353 final size:353
Alignment explanation
Indices: 7124245--7124954 Score: 1420
Period size: 353 Copynumber: 2.0 Consensus size: 353
7124235 AAGTTGGCTG
7124245 ATATCCCATCGCTTTTCCTTGTACCTGCAAAATGGTTCGGTTTACATAAGATTTTCTTCCCCGTC
1 ATATCCCATCGCTTTTCCTTGTACCTGCAAAATGGTTCGGTTTACATAAGATTTTCTTCCCCGTC
7124310 TCGTAACGAAAATCAAGCCCCTGGCTGATGAAAAGAATGTAAATGGAGGCATTAAAACTAAAATA
66 TCGTAACGAAAATCAAGCCCCTGGCTGATGAAAAGAATGTAAATGGAGGCATTAAAACTAAAATA
7124375 TGCTATCATTTCAAAACAGGAATTGAATCAAGCTAGAGCTGACCAGAACTACAACTTGAATAATC
131 TGCTATCATTTCAAAACAGGAATTGAATCAAGCTAGAGCTGACCAGAACTACAACTTGAATAATC
7124440 AAAGACCCCCCAGGACTCGAGAAGATAATGTCTAATTGTAATCACTAATCAACCAGTAGGGGTGG
196 AAAGACCCCCCAGGACTCGAGAAGATAATGTCTAATTGTAATCACTAATCAACCAGTAGGGGTGG
7124505 CCAAAATTGGACTCAACCAATAATTAGTGGATTGATTTTCAAGTTTATTTCTGAACTTTGCATGA
261 CCAAAATTGGACTCAACCAATAATTAGTGGATTGATTTTCAAGTTTATTTCTGAACTTTGCATGA
7124570 TATACGAGTATAACACAAATTTGAATAT
326 TATACGAGTATAACACAAATTTGAATAT
7124598 ATATCCCATCGCTTTTCCTTGTACCTGCAAAATGGTTCGGTTTACATAAGATTTTCTTCCCCGTC
1 ATATCCCATCGCTTTTCCTTGTACCTGCAAAATGGTTCGGTTTACATAAGATTTTCTTCCCCGTC
7124663 TCGTAACGAAAATCAAGCCCCTGGCTGATGAAAAGAATGTAAATGGAGGCATTAAAACTAAAATA
66 TCGTAACGAAAATCAAGCCCCTGGCTGATGAAAAGAATGTAAATGGAGGCATTAAAACTAAAATA
7124728 TGCTATCATTTCAAAACAGGAATTGAATCAAGCTAGAGCTGACCAGAACTACAACTTGAATAATC
131 TGCTATCATTTCAAAACAGGAATTGAATCAAGCTAGAGCTGACCAGAACTACAACTTGAATAATC
7124793 AAAGACCCCCCAGGACTCGAGAAGATAATGTCTAATTGTAATCACTAATCAACCAGTAGGGGTGG
196 AAAGACCCCCCAGGACTCGAGAAGATAATGTCTAATTGTAATCACTAATCAACCAGTAGGGGTGG
7124858 CCAAAATTGGACTCAACCAATAATTAGTGGATTGATTTTCAAGTTTATTTCTGAACTTTGCATGA
261 CCAAAATTGGACTCAACCAATAATTAGTGGATTGATTTTCAAGTTTATTTCTGAACTTTGCATGA
7124923 TATACGAGTATAACACAAATTTGAATAT
326 TATACGAGTATAACACAAATTTGAATAT
7124951 ATAT
1 ATAT
7124955 ATATATATAT
Statistics
Matches: 357, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
353 357 1.00
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.28
Consensus pattern (353 bp):
ATATCCCATCGCTTTTCCTTGTACCTGCAAAATGGTTCGGTTTACATAAGATTTTCTTCCCCGTC
TCGTAACGAAAATCAAGCCCCTGGCTGATGAAAAGAATGTAAATGGAGGCATTAAAACTAAAATA
TGCTATCATTTCAAAACAGGAATTGAATCAAGCTAGAGCTGACCAGAACTACAACTTGAATAATC
AAAGACCCCCCAGGACTCGAGAAGATAATGTCTAATTGTAATCACTAATCAACCAGTAGGGGTGG
CCAAAATTGGACTCAACCAATAATTAGTGGATTGATTTTCAAGTTTATTTCTGAACTTTGCATGA
TATACGAGTATAACACAAATTTGAATAT
Found at i:7127032 original size:241 final size:241
Alignment explanation
Indices: 7126609--7127094 Score: 963
Period size: 241 Copynumber: 2.0 Consensus size: 241
7126599 AACAAGAGCC
7126609 AAGGTGTTGCAGTGGAAAGTGGAGGGAGGAAATAGGGCTGTAAATTTGCATAATGCAAGGCACAA
1 AAGGTGTTGCAGTGGAAAGTGGAGGGAGGAAATAGGGCTGTAAATTTGCATAATGCAAGGCACAA
*
7126674 GACGGAGATACTTACCCACCCTTTGTCGATTGTAACTGTAGTTGTGTGCTTCAACCTCGCCACCC
66 GACGGAGATACTTACCCACCCTTTGTCGATTGTAACTGTAGTTGTGGGCTTCAACCTCGCCACCC
7126739 ATGAAATGAAGGAATGCCATATAAACAGATAAACAAAGGGTTGAAAGTTGAAACTCAAAGCTTAC
131 ATGAAATGAAGGAATGCCATATAAACAGATAAACAAAGGGTTGAAAGTTGAAACTCAAAGCTTAC
7126804 CTCGATATATGCTTGTGCATGAATTCACCAACCGATGTAGCAGAGT
196 CTCGATATATGCTTGTGCATGAATTCACCAACCGATGTAGCAGAGT
7126850 AAGGTGTTGCAGTGGAAAGTGGAGGGAGGAAATAGGGCTGTAAATTTGCATAATGCAAGGCACAA
1 AAGGTGTTGCAGTGGAAAGTGGAGGGAGGAAATAGGGCTGTAAATTTGCATAATGCAAGGCACAA
7126915 GACGGAGATACTTACCCACCCTTTGTCGATTGTAACTGTAGTTGTGGGCTTCAACCTCGCCACCC
66 GACGGAGATACTTACCCACCCTTTGTCGATTGTAACTGTAGTTGTGGGCTTCAACCTCGCCACCC
7126980 ATGAAATGAAGGAATGCCATATAAACAGATAAACAAAGGGTTGAAAGTTGAAACTCAAAGCTTAC
131 ATGAAATGAAGGAATGCCATATAAACAGATAAACAAAGGGTTGAAAGTTGAAACTCAAAGCTTAC
7127045 CTCGATATATGCTTGTGCATGAATTCACCAACCGATGTAGCAGAGT
196 CTCGATATATGCTTGTGCATGAATTCACCAACCGATGTAGCAGAGT
7127091 AAGG
1 AAGG
7127095 ACTCAACTAA
Statistics
Matches: 244, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
241 244 1.00
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.24
Consensus pattern (241 bp):
AAGGTGTTGCAGTGGAAAGTGGAGGGAGGAAATAGGGCTGTAAATTTGCATAATGCAAGGCACAA
GACGGAGATACTTACCCACCCTTTGTCGATTGTAACTGTAGTTGTGGGCTTCAACCTCGCCACCC
ATGAAATGAAGGAATGCCATATAAACAGATAAACAAAGGGTTGAAAGTTGAAACTCAAAGCTTAC
CTCGATATATGCTTGTGCATGAATTCACCAACCGATGTAGCAGAGT
Found at i:7136878 original size:16 final size:16
Alignment explanation
Indices: 7136857--7136887 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
7136847 GAAGGCAGCC
7136857 CTCCTAACCCAGTTTG
1 CTCCTAACCCAGTTTG
7136873 CTCCTAACCCAGTTT
1 CTCCTAACCCAGTTT
7136888 ACTTCATGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.39, G:0.10, T:0.32
Consensus pattern (16 bp):
CTCCTAACCCAGTTTG
Found at i:7141070 original size:21 final size:21
Alignment explanation
Indices: 7141044--7141083 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
7141034 ATGTTAGTAA
* *
7141044 TTTTTATATTTTTTAAATAGT
1 TTTTTACAATTTTTAAATAGT
7141065 TTTTTACAATTTTTAAATA
1 TTTTTACAATTTTTAAATA
7141084 ATTCATTAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.62
Consensus pattern (21 bp):
TTTTTACAATTTTTAAATAGT
Found at i:7141096 original size:21 final size:21
Alignment explanation
Indices: 7141053--7141096 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
7141043 ATTTTTATAT
* ** *
7141053 TTTTTAAATAGTTTTTTACAA
1 TTTTTAAATAATTCATTAAAA
7141074 TTTTTAAATAATTCATTAAAA
1 TTTTTAAATAATTCATTAAAA
7141095 TT
1 TT
7141097 ACATATAAAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.39, C:0.05, G:0.02, T:0.55
Consensus pattern (21 bp):
TTTTTAAATAATTCATTAAAA
Found at i:7149214 original size:78 final size:78
Alignment explanation
Indices: 7149085--7149230 Score: 265
Period size: 78 Copynumber: 1.9 Consensus size: 78
7149075 TTTGAGGTAA
7149085 AGCATTTGGGAGATTGGGTTTGCATTAGGCTGGCACCTAGTTTTATCTCTTTAATATAAACTGAT
1 AGCATTTGGGAGATTGGGTTTGCATTAGGCTGGCACCTAGTTTTATCTCTTTAATATAAACTGAT
7149150 TATCTGTCTAATC
66 TATCTGTCTAATC
* * *
7149163 AGCATTTGGGAGATTGGGTTTGCATTAGGTTGGCATCTAGTTTTATCTCTTTAATATGAACTGAT
1 AGCATTTGGGAGATTGGGTTTGCATTAGGCTGGCACCTAGTTTTATCTCTTTAATATAAACTGAT
7149228 TAT
66 TAT
7149231 TTATCTCATC
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
78 65 1.00
ACGTcount: A:0.24, C:0.13, G:0.22, T:0.41
Consensus pattern (78 bp):
AGCATTTGGGAGATTGGGTTTGCATTAGGCTGGCACCTAGTTTTATCTCTTTAATATAAACTGAT
TATCTGTCTAATC
Found at i:7153623 original size:22 final size:22
Alignment explanation
Indices: 7153597--7153642 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
7153587 AAAACGCTTA
7153597 CCGGGTATCATCTCGTGCATTT
1 CCGGGTATCATCTCGTGCATTT
*
7153619 CCGGGTGTCATCTCGTGCATTT
1 CCGGGTATCATCTCGTGCATTT
7153641 CC
1 CC
7153643 ACCATTTGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.11, C:0.30, G:0.24, T:0.35
Consensus pattern (22 bp):
CCGGGTATCATCTCGTGCATTT
Found at i:7154582 original size:105 final size:105
Alignment explanation
Indices: 7154400--7154609 Score: 402
Period size: 105 Copynumber: 2.0 Consensus size: 105
7154390 GGTTATCTTT
*
7154400 GACGGCGGCTAGGCCTTGTGCTTCGAAGCAGAAATACTGGTTCATCAGCCTCTTATTGACTGAAT
1 GACGGCGGCTAGGCCTTGTGCTCCGAAGCAGAAATACTGGTTCATCAGCCTCTTATTGACTGAAT
*
7154465 TCTGCTTCGGACTCATTTGTGTCGCTTTACCATCGAACAA
66 TCTGCTTCGGACTCATTTGTGTCGCTTTACCATCAAACAA
7154505 GACGGCGGCTAGGCCTTGTGCTCCGAAGCAGAAATACTGGTTCATCAGCCTCTTATTGACTGAAT
1 GACGGCGGCTAGGCCTTGTGCTCCGAAGCAGAAATACTGGTTCATCAGCCTCTTATTGACTGAAT
7154570 TCTGCTTCGGACTCATTTGTGTCGCTTTACCATCAAACAA
66 TCTGCTTCGGACTCATTTGTGTCGCTTTACCATCAAACAA
7154610 CTGTTTAAGT
Statistics
Matches: 103, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
105 103 1.00
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.30
Consensus pattern (105 bp):
GACGGCGGCTAGGCCTTGTGCTCCGAAGCAGAAATACTGGTTCATCAGCCTCTTATTGACTGAAT
TCTGCTTCGGACTCATTTGTGTCGCTTTACCATCAAACAA
Found at i:7164729 original size:32 final size:32
Alignment explanation
Indices: 7164693--7164757 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 32
7164683 CATACCATCC
*
7164693 AATCTTTCTTGTGGCCCACATGCATAACAATA
1 AATCTTCCTTGTGGCCCACATGCATAACAATA
* *
7164725 AATCTTCCTTGTGGCCCGCATGCATAGCAATA
1 AATCTTCCTTGTGGCCCACATGCATAACAATA
7164757 A
1 A
7164758 TGGAGTGTAC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.29
Consensus pattern (32 bp):
AATCTTCCTTGTGGCCCACATGCATAACAATA
Found at i:7167041 original size:15 final size:16
Alignment explanation
Indices: 7167021--7167060 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
7167011 TTTACTTCAT
*
7167021 AATGATT-AAACGCTG
1 AATGATTCAAACACTG
*
7167036 AATGATTCAAATACTG
1 AATGATTCAAACACTG
7167052 AATGATTCA
1 AATGATTCA
7167061 GAGACTGTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 7 0.32
16 15 0.68
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.30
Consensus pattern (16 bp):
AATGATTCAAACACTG
Found at i:7167067 original size:16 final size:16
Alignment explanation
Indices: 7167021--7167072 Score: 54
Period size: 16 Copynumber: 3.3 Consensus size: 16
7167011 TTTACTTCAT
7167021 AATGATT-AAACG-CTG
1 AATGATTCAAA-GACTG
*
7167036 AATGATTCAAATACTG
1 AATGATTCAAAGACTG
*
7167052 AATGATTCAGAGACTG
1 AATGATTCAAAGACTG
*
7167068 TATGA
1 AATGA
7167073 ATTTGCTCTG
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
15 7 0.23
16 24 0.77
ACGTcount: A:0.40, C:0.12, G:0.19, T:0.29
Consensus pattern (16 bp):
AATGATTCAAAGACTG
Found at i:7167148 original size:27 final size:27
Alignment explanation
Indices: 7167110--7167203 Score: 125
Period size: 27 Copynumber: 3.5 Consensus size: 27
7167100 GATAATGGCT
* *
7167110 CTGAATCATTCAAAATGTACTTCTTTG
1 CTGAATCATTCAGAATGTAATTCTTTG
* * *
7167137 CTGAATCATTCAGAAGGTATTTATTTG
1 CTGAATCATTCAGAATGTAATTCTTTG
*
7167164 CTGAATCATTCAGAATGTAATTCTGTG
1 CTGAATCATTCAGAATGTAATTCTTTG
*
7167191 CTGAACCATTCAG
1 CTGAATCATTCAG
7167204 CACTGTTTTG
Statistics
Matches: 58, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 58 1.00
ACGTcount: A:0.30, C:0.17, G:0.16, T:0.37
Consensus pattern (27 bp):
CTGAATCATTCAGAATGTAATTCTTTG
Found at i:7167350 original size:16 final size:16
Alignment explanation
Indices: 7167316--7167355 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
7167306 AAATTAAACG
*
7167316 CTGAATGATTCAAATA
1 CTGAATGATTCAAAGA
*
7167332 CTGAATGATTCAGAGA
1 CTGAATGATTCAAAGA
*
7167348 CTGTATGA
1 CTGAATGA
7167356 ATTTGCTCTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.38, C:0.12, G:0.20, T:0.30
Consensus pattern (16 bp):
CTGAATGATTCAAAGA
Found at i:7167431 original size:27 final size:27
Alignment explanation
Indices: 7167393--7167486 Score: 134
Period size: 27 Copynumber: 3.5 Consensus size: 27
7167383 GATAATGGCT
* *
7167393 CTGAATCATTCAAAATGTACTTCTTTG
1 CTGAATCATTCAGAATGTAATTCTTTG
* *
7167420 CTGAATCATTCAGAATGTATTTATTTG
1 CTGAATCATTCAGAATGTAATTCTTTG
*
7167447 CTGAATCATTCAGAATGTAATTCTGTG
1 CTGAATCATTCAGAATGTAATTCTTTG
*
7167474 CTGAACCATTCAG
1 CTGAATCATTCAG
7167487 CACTGTTTTG
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 60 1.00
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.38
Consensus pattern (27 bp):
CTGAATCATTCAGAATGTAATTCTTTG
Found at i:7167532 original size:283 final size:282
Alignment explanation
Indices: 7167025--7167590 Score: 1114
Period size: 283 Copynumber: 2.0 Consensus size: 282
7167015 CTTCATAATG
7167025 ATTAAACGCTGAATGATTCAAATACTGAATGATTCAGAGACTGTATGAATTTGCTCTGAATGTGA
1 ATTAAACGCTGAATGATTCAAATACTGAATGATTCAGAGACTGTATGAATTTGCTCTGAATGTGA
7167090 CATGTTGTTTGATAATGGCTCTGAATCATTCAAAATGTACTTCTTTGCTGAATCATTCAGAAGGT
66 CATGTTGTTTGATAATGGCTCTGAATCATTCAAAATGTACTTCTTTGCTGAATCATTCAGAAGGT
7167155 ATTTATTTGCTGAATCATTCAGAATGTAATTCTGTGCTGAACCATTCAGCACTGTTTTGTTGAAT
131 ATTTATTTGCTGAATCATTCAGAATGTAATTCTGTGCTGAACCATTCAGCACTGTTTTGTTGAAT
7167220 CAGTTAGCACTGAATCATTCAAAAATTCGAAACAAACGTACTGAATACTGAACGGTTCATCTTTC
196 CAGTTAGCACTGAATCATTCAAAAATTCGAAACAAACGTACTGAATACTGAACGGTTCATCTTTC
7167285 AACGCTGAATGATTTTCATTAAA
261 AACGCTGAATGA-TTTCATTAAA
7167308 ATTAAACGCTGAATGATTCAAATACTGAATGATTCAGAGACTGTATGAATTTGCTCTGAATGTGA
1 ATTAAACGCTGAATGATTCAAATACTGAATGATTCAGAGACTGTATGAATTTGCTCTGAATGTGA
*
7167373 CATGTTGTTTGATAATGGCTCTGAATCATTCAAAATGTACTTCTTTGCTGAATCATTCAGAATGT
66 CATGTTGTTTGATAATGGCTCTGAATCATTCAAAATGTACTTCTTTGCTGAATCATTCAGAAGGT
7167438 ATTTATTTGCTGAATCATTCAGAATGTAATTCTGTGCTGAACCATTCAGCACTGTTTTGTTGAAT
131 ATTTATTTGCTGAATCATTCAGAATGTAATTCTGTGCTGAACCATTCAGCACTGTTTTGTTGAAT
7167503 CAGTTAGCACTGAATCATTCAAAAATTCGAAACAAACGTACTGAATACTGAACGGTTCATCTTTC
196 CAGTTAGCACTGAATCATTCAAAAATTCGAAACAAACGTACTGAATACTGAACGGTTCATCTTTC
7167568 AACGCTGAATGATTTCATTAAA
261 AACGCTGAATGATTTCATTAAA
7167590 A
1 A
7167591 GACAAACAAA
Statistics
Matches: 282, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
282 11 0.04
283 271 0.96
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35
Consensus pattern (282 bp):
ATTAAACGCTGAATGATTCAAATACTGAATGATTCAGAGACTGTATGAATTTGCTCTGAATGTGA
CATGTTGTTTGATAATGGCTCTGAATCATTCAAAATGTACTTCTTTGCTGAATCATTCAGAAGGT
ATTTATTTGCTGAATCATTCAGAATGTAATTCTGTGCTGAACCATTCAGCACTGTTTTGTTGAAT
CAGTTAGCACTGAATCATTCAAAAATTCGAAACAAACGTACTGAATACTGAACGGTTCATCTTTC
AACGCTGAATGATTTCATTAAA
Found at i:7174765 original size:24 final size:24
Alignment explanation
Indices: 7174733--7174785 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
7174723 TATTCAAAAA
7174733 TTGATCTTGGTCAATACCCGGACT
1 TTGATCTTGGTCAATACCCGGACT
* * *
7174757 TTGATCTTGTTCAATACTCGGATT
1 TTGATCTTGGTCAATACCCGGACT
7174781 TTGAT
1 TTGAT
7174786 GATGTTTCAG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.21, C:0.19, G:0.19, T:0.42
Consensus pattern (24 bp):
TTGATCTTGGTCAATACCCGGACT
Found at i:7174791 original size:24 final size:24
Alignment explanation
Indices: 7174733--7174791 Score: 64
Period size: 24 Copynumber: 2.5 Consensus size: 24
7174723 TATTCAAAAA
* *
7174733 TTGATCTTGGTCAATACCCGGACT
1 TTGATCATGTTCAATACCCGGACT
* * *
7174757 TTGATCTTGTTCAATACTCGGATT
1 TTGATCATGTTCAATACCCGGACT
*
7174781 TTGATGATGTT
1 TTGATCATGTT
7174792 TCAGAATAAG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.20, C:0.17, G:0.20, T:0.42
Consensus pattern (24 bp):
TTGATCATGTTCAATACCCGGACT
Found at i:7177381 original size:140 final size:140
Alignment explanation
Indices: 7177129--7177394 Score: 487
Period size: 140 Copynumber: 1.9 Consensus size: 140
7177119 AAACGTTGTA
* *
7177129 TTATGTGTAAACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTTGATTTTGAACATTGCTA
1 TTATGTGTAAACTTTTAACATTTTCAGTTAGACATGTATTAGTAACTTGAGTTTGAACATTGCTA
* *
7177194 TGATTTGTTCAGTTGTTATCACTTATTACACATTCATTTGAATATCGCAATGCGAATTTGACTAT
66 TGATATGTTCAGTTGTTATCACTTATTACACATTCATTTGAATATCGCAACGCGAATTTGACTAT
7177259 TATGTGTATT
131 TATGTGTATT
7177269 TTATGTGTAAACTTTTAACATTTTCAGTTAGACATGTATTAGTAACTTGAGTTTGAACATTGCTA
1 TTATGTGTAAACTTTTAACATTTTCAGTTAGACATGTATTAGTAACTTGAGTTTGAACATTGCTA
*
7177334 TGATATGTTCAGTTGTTATCACTTATTACACATTCATTTGACTATCGCAACGCGAATTTGA
66 TGATATGTTCAGTTGTTATCACTTATTACACATTCATTTGAATATCGCAACGCGAATTTGA
7177395 TTATCGCAAC
Statistics
Matches: 121, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
140 121 1.00
ACGTcount: A:0.29, C:0.13, G:0.15, T:0.43
Consensus pattern (140 bp):
TTATGTGTAAACTTTTAACATTTTCAGTTAGACATGTATTAGTAACTTGAGTTTGAACATTGCTA
TGATATGTTCAGTTGTTATCACTTATTACACATTCATTTGAATATCGCAACGCGAATTTGACTAT
TATGTGTATT
Found at i:7177394 original size:20 final size:20
Alignment explanation
Indices: 7177369--7177533 Score: 129
Period size: 20 Copynumber: 8.8 Consensus size: 20
7177359 TTACACATTC
7177369 ATTTGACTATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
* *
7177389 ATTTGATTATCGCAACTC-A
1 ATTTGACTATCGCAACGCGA
*
7177408 A----A-AATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
*
7177423 ATTTGACTATCACAACGCGA
1 ATTTGACTATCGCAACGCGA
*
7177443 ATATGACTATCGCAACGC-A
1 ATTTGACTATCGCAACGCGA
* * *
7177462 A----A-AATCGTAATGCGA
1 ATTTGACTATCGCAACGCGA
* *
7177477 ATTTGAGTATCGCAACGTGA
1 ATTTGACTATCGCAACGCGA
* * *
7177497 ATTTGATTATCGCAACGGGT
1 ATTTGACTATCGCAACGCGA
7177517 ATTTGACTATCGCAACG
1 ATTTGACTATCGCAACG
7177534 AGAAAATCAC
Statistics
Matches: 114, Mismatches: 19, Indels: 24
0.73 0.12 0.15
Matches are distributed among these distances:
14 17 0.15
15 6 0.05
19 6 0.05
20 85 0.75
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (20 bp):
ATTTGACTATCGCAACGCGA
Found at i:7177454 original size:54 final size:54
Alignment explanation
Indices: 7177369--7177513 Score: 218
Period size: 54 Copynumber: 2.7 Consensus size: 54
7177359 TTACACATTC
*
7177369 ATTTGACTATCGCAACGCGAATTTGATTATCGCAACTCAAAAATCGCAACGCGA
1 ATTTGACTATCGCAACGCGAATTTGATTATCGCAACGCAAAAATCGCAACGCGA
* * * * *
7177423 ATTTGACTATCACAACGCGAATATGACTATCGCAACGCAAAAATCGTAATGCGA
1 ATTTGACTATCGCAACGCGAATTTGATTATCGCAACGCAAAAATCGCAACGCGA
* *
7177477 ATTTGAGTATCGCAACGTGAATTTGATTATCGCAACG
1 ATTTGACTATCGCAACGCGAATTTGATTATCGCAACG
7177514 GGTATTTGAC
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 80 1.00
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.26
Consensus pattern (54 bp):
ATTTGACTATCGCAACGCGAATTTGATTATCGCAACGCAAAAATCGCAACGCGA
Found at i:7177573 original size:74 final size:74
Alignment explanation
Indices: 7177415--7177582 Score: 171
Period size: 74 Copynumber: 2.3 Consensus size: 74
7177405 TCAAAAATCG
** *
7177415 CAACGCGAATTTGACTATCACAACGCGAATATGACTATCGCAACGCAAAAATCGTAATGCGAATT
1 CAACGCGAATTTGACTATCACAACGCGAATATGACTATCGCAACGCAAAAATCACAAAGCGAATT
* * *
7177480 TGAGTATCG
66 AGACTATCA
* * * * * *
7177489 CAACGTGAATTTGATTATCGCAACGGGTATTTGACTATCGCAACG-AGAAAATCACAAAGC-ATA
1 CAACGCGAATTTGACTATCACAACGCGAATATGACTATCGCAACGCA-AAAATCACAAAGCGA-A
7177552 TTAGACTATCA
64 TTAGACTATCA
* *
7177563 CAGCGCGAA-TTGACTTTCAC
1 CAACGCGAATTTGACTATCAC
7177583 GTTGCGATTT
Statistics
Matches: 75, Mismatches: 17, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
73 10 0.13
74 65 0.87
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.24
Consensus pattern (74 bp):
CAACGCGAATTTGACTATCACAACGCGAATATGACTATCGCAACGCAAAAATCACAAAGCGAATT
AGACTATCA
Found at i:7177627 original size:20 final size:20
Alignment explanation
Indices: 7177582--7177629 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
7177572 TTGACTTTCA
*
7177582 CGTTGCGATTTTGGCTTTCG
1 CGTTGCGATTTTGGCTTTAG
*
7177602 CATTGCGATTTTGAG-TTTAG
1 CGTTGCGATTTTG-GCTTTAG
7177622 CGTTGCGA
1 CGTTGCGA
7177630 AAGTGTACCT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 23 0.96
21 1 0.04
ACGTcount: A:0.12, C:0.17, G:0.29, T:0.42
Consensus pattern (20 bp):
CGTTGCGATTTTGGCTTTAG
Found at i:7177745 original size:36 final size:36
Alignment explanation
Indices: 7177704--7177808 Score: 111
Period size: 36 Copynumber: 3.2 Consensus size: 36
7177694 TTACATTTTA
7177704 ATCAATTAAATAAGCACAAATAAGAATTATTTACAC
1 ATCAATTAAATAAGCACAAATAAGAATTATTTACAC
* * *
7177740 ATCAA-T---TAA--ACAAAT--CAACT-TTTACAA
1 ATCAATTAAATAAGCACAAATAAGAATTATTTACAC
*
7177767 ATCAATTAAACAAGCACAAATAAGAATTATTTACAC
1 ATCAATTAAATAAGCACAAATAAGAATTATTTACAC
7177803 ATCAAT
1 ATCAAT
7177809 ATTAAACAAA
Statistics
Matches: 53, Mismatches: 7, Indels: 18
0.68 0.09 0.23
Matches are distributed among these distances:
27 11 0.21
28 4 0.08
30 6 0.11
31 2 0.04
32 3 0.06
33 6 0.11
35 4 0.08
36 17 0.32
ACGTcount: A:0.52, C:0.16, G:0.04, T:0.28
Consensus pattern (36 bp):
ATCAATTAAATAAGCACAAATAAGAATTATTTACAC
Found at i:7177839 original size:65 final size:63
Alignment explanation
Indices: 7177681--7177916 Score: 276
Period size: 63 Copynumber: 3.5 Consensus size: 63
7177671 GATTGAAATC
*
7177681 AACAAATCAACTTTTACATTTTAATCAATTAAATAAGCACAAATAAGAATTATTTACACATCAAT
1 AACAAATCAACTTTTACA----AATCAATTAAACAAGCACAAATAAGAATTATTTACACATCAAT
7177746 TA
62 TA
7177748 AACAAATCAACTTTTACAAATCAATTAAACAAGCACAAATAAGAATTATTTACACATCAATATTA
1 AACAAATCAACTTTTACAAATCAATTAAACAAGCACAAATAAGAATTATTTACACATC-A-ATTA
* * * *
7177813 AACAAATCAACTTTTACAAATCAATTAAACAAGCAAAAAATGCTAATAATTCTTATTTTCCTCAT
1 AACAAATCAACTTTTACAAATCAATTAAACAAGC-ACAAA---TAAGAA---TTA-TTTACACAT
7177878 CAATTA
58 CAATTA
7177884 AACAAATCAGACTTTTA-AGAATCAATTAAACAA
1 AACAAATCA-ACTTTTACA-AATCAATTAAACAA
7177917 TAAAAAAAGT
Statistics
Matches: 152, Mismatches: 5, Indels: 19
0.86 0.03 0.11
Matches are distributed among these distances:
63 39 0.26
64 1 0.01
65 38 0.25
66 4 0.03
67 18 0.12
69 5 0.03
71 14 0.09
72 25 0.16
73 8 0.05
ACGTcount: A:0.50, C:0.17, G:0.03, T:0.30
Consensus pattern (63 bp):
AACAAATCAACTTTTACAAATCAATTAAACAAGCACAAATAAGAATTATTTACACATCAATTA
Found at i:7178677 original size:23 final size:22
Alignment explanation
Indices: 7178651--7178714 Score: 74
Period size: 23 Copynumber: 2.8 Consensus size: 22
7178641 CAACTCATAT
7178651 AATTGCACCTAAGTGCCACGTAG
1 AATTGCACCT-AGTGCCACGTAG
* **
7178674 AATTGCACCGGAGTGCTGCGTAG
1 AATTGCACC-TAGTGCCACGTAG
7178697 AATTGCACCGTAGTGCCA
1 AATTGCACC-TAGTGCCA
7178715 TATAATAATG
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.27, C:0.25, G:0.27, T:0.22
Consensus pattern (22 bp):
AATTGCACCTAGTGCCACGTAG
Found at i:7178856 original size:103 final size:103
Alignment explanation
Indices: 7178730--7179050 Score: 588
Period size: 103 Copynumber: 3.1 Consensus size: 103
7178720 TAATGTCCAT
7178730 AAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
* *
7178795 GACTTCACACATGTTCTAAAGAATAGATATATGTCCCG
66 GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
*
7178833 AAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
*
7178898 GACCTCACACATGTTCCAAAGAATACATATATGTCCCG
66 GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
7178936 AAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
*
7179001 GACTTCACACATGTTCCAAAGAACACATATATGTCCCG
66 GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
*
7179039 AAGAACCACATA
1 AAGGACCACATA
7179051 GACCCTCTAC
Statistics
Matches: 210, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
103 210 1.00
ACGTcount: A:0.37, C:0.24, G:0.13, T:0.25
Consensus pattern (103 bp):
AAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
Found at i:7179569 original size:18 final size:19
Alignment explanation
Indices: 7179532--7179568 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
7179522 TTTTTTATTA
*
7179532 TGGGGGAATCGGTTCCCCC
1 TGGGGGAATCGATTCCCCC
*
7179551 TGGGGGTATCGATTCCCC
1 TGGGGGAATCGATTCCCC
7179569 TCTAGCGTTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.11, C:0.30, G:0.35, T:0.24
Consensus pattern (19 bp):
TGGGGGAATCGATTCCCCC
Found at i:7179620 original size:21 final size:21
Alignment explanation
Indices: 7179596--7179638 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
7179586 TCATATTCGT
*
7179596 TTGAGGGGGTATCGATTCCCC
1 TTGAAGGGGTATCGATTCCCC
*
7179617 TTGAATGGGTATCGATTCCCC
1 TTGAAGGGGTATCGATTCCCC
7179638 T
1 T
7179639 AGCCCAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.16, C:0.23, G:0.28, T:0.33
Consensus pattern (21 bp):
TTGAAGGGGTATCGATTCCCC
Found at i:7181537 original size:21 final size:20
Alignment explanation
Indices: 7181471--7181540 Score: 59
Period size: 21 Copynumber: 3.4 Consensus size: 20
7181461 ATGAATCGGG
*
7181471 CTCTTGAATGGTGGGAGGGA
1 CTCTTGAACGGTGGGAGGGA
* * ** *
7181491 CCTCTTCAACGATGACAGGGGC
1 -CTCTTGAACGGTGGGA-GGGA
7181513 CTCTTGAACGGTGGGAGTGGA
1 CTCTTGAACGGTGGGAG-GGA
7181534 CTCTTGA
1 CTCTTGA
7181541 GGGATGATAA
Statistics
Matches: 36, Mismatches: 11, Indels: 4
0.71 0.22 0.08
Matches are distributed among these distances:
20 1 0.03
21 32 0.89
22 3 0.08
ACGTcount: A:0.20, C:0.20, G:0.36, T:0.24
Consensus pattern (20 bp):
CTCTTGAACGGTGGGAGGGA
Found at i:7181547 original size:42 final size:42
Alignment explanation
Indices: 7181471--7181564 Score: 109
Period size: 42 Copynumber: 2.2 Consensus size: 42
7181461 ATGAATCGGG
* **
7181471 CTCTTGAATGGTGGGAGGGACCTCTTCAACGATGACAGGGGC
1 CTCTTGAACGGTGGGAGGGACCTCTTCAACGATGACAAAGGC
* ** *
7181513 CTCTTGAACGGTGGGAGTGGA-CTCTTGAGGGATGATAAAGGC
1 CTCTTGAACGGTGGGAG-GGACCTCTTCAACGATGACAAAGGC
7181555 CTCTTGAACG
1 CTCTTGAACG
7181565 ATATGAGAAG
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
42 41 0.93
43 3 0.07
ACGTcount: A:0.22, C:0.19, G:0.35, T:0.23
Consensus pattern (42 bp):
CTCTTGAACGGTGGGAGGGACCTCTTCAACGATGACAAAGGC
Found at i:7182076 original size:20 final size:20
Alignment explanation
Indices: 7182053--7182095 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
7182043 CTTAAAATCA
*
7182053 CAACGTGAAAATGACTATCG
1 CAACGCGAAAATGACTATCG
*
7182073 CAACGCGGAAATGACTATCG
1 CAACGCGAAAATGACTATCG
7182093 CAA
1 CAA
7182096 AATTTGACTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.40, C:0.23, G:0.21, T:0.16
Consensus pattern (20 bp):
CAACGCGAAAATGACTATCG
Found at i:7182150 original size:18 final size:19
Alignment explanation
Indices: 7182118--7182174 Score: 71
Period size: 18 Copynumber: 3.0 Consensus size: 19
7182108 GCAACGGGAT
*
7182118 AATCGCAATGCGAAATAAA
1 AATCGCAACGCGAAATAAA
**
7182137 AATCGC-ACGCGAAACCAA
1 AATCGCAACGCGAAATAAA
7182155 AATCGCAACGCGAAACTAAA
1 AATCGCAACGCGAAA-TAAA
7182175 TTCGCGTGCG
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
18 15 0.48
19 14 0.45
20 2 0.06
ACGTcount: A:0.49, C:0.25, G:0.16, T:0.11
Consensus pattern (19 bp):
AATCGCAACGCGAAATAAA
Found at i:7182179 original size:19 final size:19
Alignment explanation
Indices: 7182118--7182179 Score: 74
Period size: 19 Copynumber: 3.3 Consensus size: 19
7182108 GCAACGGGAT
*
7182118 AATCGCAATGCGAAA-TAAA
1 AATCGCAACGCGAAACT-AA
*
7182137 AATCGC-ACGCGAAACCAA
1 AATCGCAACGCGAAACTAA
7182155 AATCGCAACGCGAAACTAA
1 AATCGCAACGCGAAACTAA
*
7182174 ATTCGC
1 AATCGC
7182180 GTGCGATAGT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
18 15 0.41
19 22 0.59
ACGTcount: A:0.45, C:0.26, G:0.16, T:0.13
Consensus pattern (19 bp):
AATCGCAACGCGAAACTAA
Found at i:7184208 original size:20 final size:20
Alignment explanation
Indices: 7184185--7184287 Score: 118
Period size: 20 Copynumber: 5.2 Consensus size: 20
7184175 GAAAGTTAAA
*
7184185 ATCGCAACACGAAAATGACT
1 ATCGCAACGCGAAAATGACT
**
7184205 ATCGCAACGCGAATTTGACT
1 ATCGCAACGCGAAAATGACT
**
7184225 ATCGCAACGCG-AAATGAAA
1 ATCGCAACGCGAAAATGACT
* *
7184244 ATCGCAACACGAAAATCACT
1 ATCGCAACGCGAAAATGACT
**
7184264 ATCGCAACGCGAATTTGACT
1 ATCGCAACGCGAAAATGACT
7184284 ATCG
1 ATCG
7184288 TTGCGATTTT
Statistics
Matches: 67, Mismatches: 15, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
19 14 0.21
20 53 0.79
ACGTcount: A:0.39, C:0.25, G:0.17, T:0.18
Consensus pattern (20 bp):
ATCGCAACGCGAAAATGACT
Done.