Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001547.1 Hibiscus syriacus cultivar Beakdansim tig00003041_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10425128
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 38 of 51
Found at i:7402178 original size:35 final size:37
Alignment explanation
Indices: 7402097--7402183 Score: 99
Period size: 38 Copynumber: 2.4 Consensus size: 37
7402087 TTAGTATTCT
* * *
7402097 ATAATTATTAGT-AATAATTATTAAATCATTAGTATTAA
1 ATAATTATTA-TAAATAATTACTAAATCAATAG-ACTAA
*
7402135 ATCATTATTATAAATAATTACTAAAT-AATA-ACTAA
1 ATAATTATTATAAATAATTACTAAATCAATAGACTAA
7402170 ATAATTATTATAAA
1 ATAATTATTATAAA
7402184 ATCATTATTA
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
35 17 0.40
37 4 0.09
38 22 0.51
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.41
Consensus pattern (37 bp):
ATAATTATTATAAATAATTACTAAATCAATAGACTAA
Found at i:7402204 original size:12 final size:13
Alignment explanation
Indices: 7402113--7402862 Score: 326
Period size: 14 Copynumber: 55.1 Consensus size: 13
7402103 ATTAGTAATA
7402113 ATTATTAAATCATT
1 ATTA-TAAATCATT
*
7402127 AGTATTAAATCATT
1 ATTA-TAAATCATT
7402141 ATTATAAAT-A--
1 ATTATAAATCATT
7402151 ATTACTAAAT-A--
1 ATTA-TAAATCATT
* *
7402162 ATAACTAAATAATT
1 ATTA-TAAATCATT
7402176 ATTATAAAATCATT
1 ATTAT-AAATCATT
*
7402190 ATTAT-AATGATT
1 ATTATAAATCATT
7402202 ATTATCAAATCATT
1 ATTAT-AAATCATT
7402216 ACTAAATCATCAAATCATT
1 A-T---T-AT-AAATCATT
*
7402235 AAATATTTAAATCATT
1 --AT-TATAAATCATT
7402251 A-T-TAAATCATT
1 ATTATAAATCATT
* *
7402262 TTTAT-AATGATT
1 ATTATAAATCATT
7402274 ATTACTAAATCATT
1 ATTA-TAAATCATT
*
7402288 ATTAT-AATGATT
1 ATTATAAATCATT
7402300 ATTATCAAATCATT
1 ATTAT-AAATCATT
7402314 ACTAAATCATCAAATCATT
1 A-T---T-AT-AAATCATT
*
7402333 AAATATTTAAATCATT
1 --AT-TATAAATCATT
7402349 A-T-TAAATCATT
1 ATTATAAATCATT
* *
7402360 TTTAT-AATGATT
1 ATTATAAATCATT
7402372 ATTACTAAATCATT
1 ATTA-TAAATCATT
*
7402386 ATTAT-AATGATT
1 ATTATAAATCATT
7402398 ATTATCAAATCATT
1 ATTAT-AAATCATT
* *
7402412 ACTAT-AATGATT
1 ATTATAAATCATT
7402424 ATTATCAAATCATT
1 ATTAT-AAATCATT
7402438 ACTAAATCATCAAATCATT
1 A-T---T-AT-AAATCATT
*
7402457 AAATATTTAAATCATT
1 --AT-TATAAATCATT
7402473 A-T-TAAATCATT
1 ATTATAAATCATT
* *
7402484 TTTAT-AATGATT
1 ATTATAAATCATT
7402496 ATTATTAAATCATT
1 ATTA-TAAATCATT
* *
7402510 TTTAT-AATGATT
1 ATTATAAATCATT
7402522 ATTACTAAATCATT
1 ATTA-TAAATCATT
*
7402536 ATTAT-AATGATT
1 ATTATAAATCATT
7402548 ATTATCAAATCATT
1 ATTAT-AAATCATT
*
7402562 ATTAT-AATTATT
1 ATTATAAATCATT
*
7402574 ATTATCAAATTATT
1 ATTAT-AAATCATT
* *
7402588 ACTAT-AATGATT
1 ATTATAAATCATT
7402600 ATTATCAAATCATT
1 ATTAT-AAATCATT
7402614 ACTAAATCATCAAATCATT
1 A-T---T-AT-AAATCATT
*
7402633 AAATATTTAAATCATT
1 --AT-TATAAATCATT
7402649 A-T-TAAATCATT
1 ATTATAAATCATT
* *
7402660 TTTAT-AATGATT
1 ATTATAAATCATT
7402672 ATTACTAAATCATT
1 ATTA-TAAATCATT
*
7402686 ATTAT-AATGATT
1 ATTATAAATCATT
7402698 ATTATCAAATCATT
1 ATTAT-AAATCATT
* *
7402712 ACTAT-AATGATT
1 ATTATAAATCATT
7402724 ATTATCAAATCATT
1 ATTAT-AAATCATT
7402738 ACTAAATCATCAAATCATT
1 A-T---T-AT-AAATCATT
*
7402757 AAATATTTAAATCATT
1 --AT-TATAAATCATT
7402773 A-T-TAAATCATT
1 ATTATAAATCATT
* *
7402784 TTTAT-AATGATT
1 ATTATAAATCATT
7402796 ATTACTAAATCATT
1 ATTA-TAAATCATT
*
7402810 ATTAT--AGCGATT
1 ATTATAAATC-ATT
7402822 ATTATCAAATCATT
1 ATTAT-AAATCATT
* *
7402836 ACTAT-AATGATT
1 ATTATAAATCATT
7402848 ATTATCAAATCATT
1 ATTAT-AAATCATT
7402862 A
1 A
7402863 CTAAATCATC
Statistics
Matches: 587, Mismatches: 63, Indels: 172
0.71 0.08 0.21
Matches are distributed among these distances:
10 4 0.01
11 62 0.11
12 180 0.31
13 23 0.04
14 186 0.32
15 7 0.01
16 40 0.07
17 5 0.01
18 15 0.03
19 55 0.09
20 5 0.01
21 5 0.01
ACGTcount: A:0.44, C:0.10, G:0.02, T:0.44
Consensus pattern (13 bp):
ATTATAAATCATT
Found at i:7402211 original size:26 final size:26
Alignment explanation
Indices: 7402113--7402862 Score: 545
Period size: 26 Copynumber: 30.2 Consensus size: 26
7402103 ATTAGTAATA
* * *
7402113 ATTATTA-AATCATTAGTATTAAATC
1 ATTATTATAATGATTATTATCAAATC
* *
7402138 ATTATTATAA--ATAATTA-CTAAATA
1 ATTATTATAATGATTATTATC-AAATC
* * * *
7402162 ATAACTA-AATAATTATTATAAAATC
1 ATTATTATAATGATTATTATCAAATC
7402187 ATTATTATAATGATTATTATCAAATC
1 ATTATTATAATGATTATTATCAAATC
* * * * * *
7402213 ATTACTA-AATCATCA-AATC-ATTA
1 ATTATTATAATGATTATTATCAAATC
* * *
7402236 AATATT-TAA--ATCATTATTAAATC
1 ATTATTATAATGATTATTATCAAATC
*
7402259 ATTTTTATAATGATTATTA-CTAAATC
1 ATTATTATAATGATTATTATC-AAATC
7402285 ATTATTATAATGATTATTATCAAATC
1 ATTATTATAATGATTATTATCAAATC
* * * * * *
7402311 ATTACTA-AATCATCA-AATC-ATTA
1 ATTATTATAATGATTATTATCAAATC
* * *
7402334 AATATT-TAA--ATCATTATTAAATC
1 ATTATTATAATGATTATTATCAAATC
*
7402357 ATTTTTATAATGATTATTA-CTAAATC
1 ATTATTATAATGATTATTATC-AAATC
7402383 ATTATTATAATGATTATTATCAAATC
1 ATTATTATAATGATTATTATCAAATC
*
7402409 ATTACTATAATGATTATTATCAAATC
1 ATTATTATAATGATTATTATCAAATC
* * * * * *
7402435 ATTACTA-AATCATCA-AATC-ATTA
1 ATTATTATAATGATTATTATCAAATC
* * *
7402458 AATATT-TAA--ATCATTATTAAATC
1 ATTATTATAATGATTATTATCAAATC
* *
7402481 ATTTTTATAATGATTATTATTAAATC
1 ATTATTATAATGATTATTATCAAATC
*
7402507 ATTTTTATAATGATTATTA-CTAAATC
1 ATTATTATAATGATTATTATC-AAATC
7402533 ATTATTATAATGATTATTATCAAATC
1 ATTATTATAATGATTATTATCAAATC
* *
7402559 ATTATTATAATTATTATTATCAAATT
1 ATTATTATAATGATTATTATCAAATC
*
7402585 ATTACTATAATGATTATTATCAAATC
1 ATTATTATAATGATTATTATCAAATC
* * * * * *
7402611 ATTACTA-AATCATCA-AATC-ATTA
1 ATTATTATAATGATTATTATCAAATC
* * *
7402634 AATATT-TAA--ATCATTATTAAATC
1 ATTATTATAATGATTATTATCAAATC
*
7402657 ATTTTTATAATGATTATTA-CTAAATC
1 ATTATTATAATGATTATTATC-AAATC
7402683 ATTATTATAATGATTATTATCAAATC
1 ATTATTATAATGATTATTATCAAATC
*
7402709 ATTACTATAATGATTATTATCAAATC
1 ATTATTATAATGATTATTATCAAATC
* * * * * *
7402735 ATTACTA-AATCATCA-AATC-ATTA
1 ATTATTATAATGATTATTATCAAATC
* * *
7402758 AATATT-TAA--ATCATTATTAAATC
1 ATTATTATAATGATTATTATCAAATC
*
7402781 ATTTTTATAATGATTATTA-CTAAATC
1 ATTATTATAATGATTATTATC-AAATC
**
7402807 ATTATTATAGCGATTATTATCAAATC
1 ATTATTATAATGATTATTATCAAATC
*
7402833 ATTACTATAATGATTATTATCAAATC
1 ATTATTATAATGATTATTATCAAATC
7402859 ATTA
1 ATTA
7402863 CTAAATCATC
Statistics
Matches: 572, Mismatches: 107, Indels: 91
0.74 0.14 0.12
Matches are distributed among these distances:
21 20 0.03
22 10 0.02
23 72 0.13
24 44 0.08
25 52 0.09
26 369 0.65
27 5 0.01
ACGTcount: A:0.44, C:0.10, G:0.02, T:0.44
Consensus pattern (26 bp):
ATTATTATAATGATTATTATCAAATC
Found at i:7402284 original size:98 final size:97
Alignment explanation
Indices: 7402173--7402715 Score: 656
Period size: 98 Copynumber: 5.5 Consensus size: 97
7402163 TAACTAAATA
7402173 ATTATTATAAAATCATTATTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAA
1 ATTATTAT-AAATCATTATTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAA
7402238 TATTTAAATCATTATTAAATCATTTTTATAATG
65 TATTTAAATCATTATTAAATCATTTTTATAATG
7402271 ATTATTACTAAATCATTATTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAA
1 ATTATTA-TAAATCATTATTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAA
7402336 TATTTAAATCATTATTAAATCATTTTTATAATG
65 TATTTAAATCATTATTAAATCATTTTTATAATG
* * * *
7402369 ATTATTACTAAATCATTATTATAATGATTATTATCAAATCATTACTATAATGAT--TATTATCAA
1 ATTATTA-TAAATCATTATTATAATGATTATTATCAAATCATTACTA-AATCATCAAATCATTAA
*
7402432 ATCATTACTAAATCATCAAATCATTAAAT-A--TTTA-AATC
64 AT-ATT--TAAATCAT----T-ATTAAATCATTTTTATAATG
* * ** * * * *
7402470 ATTA-T-TAAATCATTTTTATAATGATTATTATTAAATCATTTTTATAATGAT--TATTACTAAA
1 ATTATTATAAATCATTATTATAATGATTATTATCAAATCATTACTA-AATCATCAAATCATTAAA
* * *
7402531 TCATTATTATAATGATTATTATCAAATCATTATTATAATT
65 T-A-T-TTA-AATCATTA-T-T-AAATCATTTTTATAATG
* *
7402571 ATTATTATCAAATTATTACTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAA
1 ATTATTAT-AAATCATTATTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAA
7402636 TATTTAAATCATTATTAAATCATTTTTATAATG
65 TATTTAAATCATTATTAAATCATTTTTATAATG
7402669 ATTATTACTAAATCATTATTATAATGATTATTATCAAATCATTACTA
1 ATTATTA-TAAATCATTATTATAATGATTATTATCAAATCATTACTA
7402716 TAATGATTAT
Statistics
Matches: 390, Mismatches: 29, Indels: 52
0.83 0.06 0.11
Matches are distributed among these distances:
94 1 0.00
95 2 0.01
96 1 0.00
97 12 0.03
98 260 0.67
99 14 0.04
100 14 0.04
101 21 0.05
102 8 0.02
103 7 0.02
104 35 0.09
105 15 0.04
ACGTcount: A:0.43, C:0.10, G:0.02, T:0.45
Consensus pattern (97 bp):
ATTATTATAAATCATTATTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAAT
ATTTAAATCATTATTAAATCATTTTTATAATG
Found at i:7402383 original size:124 final size:124
Alignment explanation
Indices: 7402248--7402562 Score: 587
Period size: 124 Copynumber: 2.5 Consensus size: 124
7402238 TATTTAAATC
7402248 ATTATTAAATCATTTTTATAATGATTATTACTAAATCATTATTATAATGATTATTATCAAATCAT
1 ATTATTAAATCATTTTTATAATGATTATTACTAAATCATTATTATAATGATTATTATCAAATCAT
7402313 TACTAAATCATCAAATCATTAAATATTTAAATCATTATTAAATCATTTTTATAATGATT
66 TACTAAATCATCAAATCATTAAATATTTAAATCATTATTAAATCATTTTTATAATGATT
* * *
7402372 ATTACTAAATCATTATTATAATGATTATTA-TCAAATCATTACTATAATGATTATTATCAAATCA
1 ATTATTAAATCATTTTTATAATGATTATTACT-AAATCATTATTATAATGATTATTATCAAATCA
7402436 TTACTAAATCATCAAATCATTAAATATTTAAATCATTATTAAATCATTTTTATAATGATT
65 TTACTAAATCATCAAATCATTAAATATTTAAATCATTATTAAATCATTTTTATAATGATT
7402496 ATTATTAAATCATTTTTATAATGATTATTACTAAATCATTATTATAATGATTATTATCAAATCAT
1 ATTATTAAATCATTTTTATAATGATTATTACTAAATCATTATTATAATGATTATTATCAAATCAT
7402561 TA
66 TA
7402563 TTATAATTAT
Statistics
Matches: 183, Mismatches: 6, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
123 1 0.01
124 181 0.99
125 1 0.01
ACGTcount: A:0.43, C:0.09, G:0.03, T:0.45
Consensus pattern (124 bp):
ATTATTAAATCATTTTTATAATGATTATTACTAAATCATTATTATAATGATTATTATCAAATCAT
TACTAAATCATCAAATCATTAAATATTTAAATCATTATTAAATCATTTTTATAATGATT
Found at i:7402547 original size:176 final size:175
Alignment explanation
Indices: 7402346--7402738 Score: 689
Period size: 176 Copynumber: 2.2 Consensus size: 175
7402336 TATTTAAATC
*
7402346 ATTATTAAATCATTTTTATAATGATTATTA-CTAAATCATTATTATAATGATTATTATCAAATCA
1 ATTA-TAAATCATTATTATAATGATTATTATC-AAATCATTATTATAATGATTATTATCAAATCA
7402410 TTACTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATCATTAT
64 TTACTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATCATTAT
* *
7402475 TAAATCATTTTTATAATGATTATTATTAAATCATTTTTATAATGATT
129 TAAATCATTTTTATAATGATTATTACTAAATCATTATTATAATGATT
* *
7402522 ATTACTAAATCATTATTATAATGATTATTATCAAATCATTATTATAATTATTATTATCAAATTAT
1 ATTA-TAAATCATTATTATAATGATTATTATCAAATCATTATTATAATGATTATTATCAAATCAT
7402587 TACTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATCATTATT
65 TACTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATCATTATT
7402652 AAATCATTTTTATAATGATTATTACTAAATCATTATTATAATGATT
130 AAATCATTTTTATAATGATTATTACTAAATCATTATTATAATGATT
*
7402698 ATTATCAAATCATTACTATAATGATTATTATCAAATCATTA
1 ATTAT-AAATCATTATTATAATGATTATTATCAAATCATTA
7402739 CTAAATCATC
Statistics
Matches: 208, Mismatches: 7, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
175 1 0.00
176 206 0.99
177 1 0.00
ACGTcount: A:0.43, C:0.09, G:0.03, T:0.46
Consensus pattern (175 bp):
ATTATAAATCATTATTATAATGATTATTATCAAATCATTATTATAATGATTATTATCAAATCATT
ACTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATCATTATTA
AATCATTTTTATAATGATTATTACTAAATCATTATTATAATGATT
Found at i:7402655 original size:124 final size:124
Alignment explanation
Indices: 7402522--7402920 Score: 728
Period size: 124 Copynumber: 3.2 Consensus size: 124
7402512 TATAATGATT
* * * *
7402522 ATTACTAAATCATTATTATAATGATTATTA-TCAAATCATTATTATAATTATTATTATCAAATTA
1 ATTATTAAATCATTTTTATAATGATTATTACT-AAATCATTATTATAATGATTATTATCAAATCA
7402586 TTACTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATC
65 TTACTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATC
7402646 ATTATTAAATCATTTTTATAATGATTATTACTAAATCATTATTATAATGATTATTATCAAATCAT
1 ATTATTAAATCATTTTTATAATGATTATTACTAAATCATTATTATAATGATTATTATCAAATCAT
7402711 TACTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATC
66 TACTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATC
**
7402770 ATTATTAAATCATTTTTATAATGATTATTACTAAATCATTATTATAGCGATTATTATCAAATCAT
1 ATTATTAAATCATTTTTATAATGATTATTACTAAATCATTATTATAATGATTATTATCAAATCAT
7402835 TACTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATC
66 TACTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATC
7402894 ATTATTAAATCATTTTTATAATGATTA
1 ATTATTAAATCATTTTTATAATGATTA
7402921 ATAAATAAAT
Statistics
Matches: 268, Mismatches: 6, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
124 267 1.00
125 1 0.00
ACGTcount: A:0.43, C:0.10, G:0.03, T:0.44
Consensus pattern (124 bp):
ATTATTAAATCATTTTTATAATGATTATTACTAAATCATTATTATAATGATTATTATCAAATCAT
TACTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATC
Found at i:7402672 original size:300 final size:300
Alignment explanation
Indices: 7402248--7402862 Score: 1108
Period size: 300 Copynumber: 2.0 Consensus size: 300
7402238 TATTTAAATC
* * *
7402248 ATTATTAAATCATTTTTATAATGATTATTACTAAATCATTATTATAATGATTATTATCAAATCAT
1 ATTATCAAATCATTATTATAATGATTATTACTAAATCATTACTATAATGATTATTATCAAATCAT
7402313 TACTAAATCATCAAATCATTAAATATTTAAATCATTATTAAATCATTTTTATAATGATTATTACT
66 TACTAAATCATCAAATCATTAAATATTTAAATCATTATTAAATCATTTTTATAATGATTATTACT
7402378 AAATCATTATTATAATGATTATTATCAAATCATTACTATAATGATTATTATCAAATCATTACTAA
131 AAATCATTATTATAATGATTATTATCAAATCATTACTATAATGATTATTATCAAATCATTACTAA
*
7402443 ATCATCAAATCATTAAATATTTAAATCATTATTAAATCATTTTTATAATGATTATTATTAAATCA
196 ATCATCAAATCATTAAATATTTAAATCATTATTAAATCATTTTTATAATGATTATTACTAAATCA
* * *
7402508 TTTTTATAATGATTATTA-CTAAATCATTATTATAATGATT
261 TTATTATAACGATTATTATC-AAATCATTACTATAATGATT
* *
7402548 ATTATCAAATCATTATTATAATTATTATTA-TCAAATTATTACTATAATGATTATTATCAAATCA
1 ATTATCAAATCATTATTATAATGATTATTACT-AAATCATTACTATAATGATTATTATCAAATCA
7402612 TTACTAAATCATCAAATCATTAAATATTTAAATCATTATTAAATCATTTTTATAATGATTATTAC
65 TTACTAAATCATCAAATCATTAAATATTTAAATCATTATTAAATCATTTTTATAATGATTATTAC
7402677 TAAATCATTATTATAATGATTATTATCAAATCATTACTATAATGATTATTATCAAATCATTACTA
130 TAAATCATTATTATAATGATTATTATCAAATCATTACTATAATGATTATTATCAAATCATTACTA
7402742 AATCATCAAATCATTAAATATTTAAATCATTATTAAATCATTTTTATAATGATTATTACTAAATC
195 AATCATCAAATCATTAAATATTTAAATCATTATTAAATCATTTTTATAATGATTATTACTAAATC
*
7402807 ATTATTATAGCGATTATTATCAAATCATTACTATAATGATT
260 ATTATTATAACGATTATTATCAAATCATTACTATAATGATT
7402848 ATTATCAAATCATTA
1 ATTATCAAATCATTA
7402863 CTAAATCATC
Statistics
Matches: 303, Mismatches: 10, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
299 1 0.00
300 301 0.99
301 1 0.00
ACGTcount: A:0.43, C:0.10, G:0.03, T:0.45
Consensus pattern (300 bp):
ATTATCAAATCATTATTATAATGATTATTACTAAATCATTACTATAATGATTATTATCAAATCAT
TACTAAATCATCAAATCATTAAATATTTAAATCATTATTAAATCATTTTTATAATGATTATTACT
AAATCATTATTATAATGATTATTATCAAATCATTACTATAATGATTATTATCAAATCATTACTAA
ATCATCAAATCATTAAATATTTAAATCATTATTAAATCATTTTTATAATGATTATTACTAAATCA
TTATTATAACGATTATTATCAAATCATTACTATAATGATT
Found at i:7406655 original size:28 final size:30
Alignment explanation
Indices: 7406615--7406677 Score: 103
Period size: 28 Copynumber: 2.2 Consensus size: 30
7406605 ATTTTTTATA
*
7406615 TAATATAATATATAACTTAAACTAATAAAC
1 TAATATAATATATAACTTAAACTAACAAAC
7406645 TAATAT-A-ATATAACTTAAACTAACAAAC
1 TAATATAATATATAACTTAAACTAACAAAC
7406673 TAATA
1 TAATA
7406678 ATTTATACTA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
28 25 0.78
29 1 0.03
30 6 0.19
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.32
Consensus pattern (30 bp):
TAATATAATATATAACTTAAACTAACAAAC
Found at i:7406684 original size:28 final size:28
Alignment explanation
Indices: 7406619--7406684 Score: 98
Period size: 28 Copynumber: 2.4 Consensus size: 28
7406609 TTTATATAAT
*
7406619 ATAATATATAACTTAAACTAATAAACTA
1 ATAATATATAACTTAAACTAACAAACTA
7406647 AT-ATAATATAACTTAAACTAACAAACTA
1 ATAAT-ATATAACTTAAACTAACAAACTA
*
7406675 ATAATTTATA
1 ATAATATATA
7406685 CTAACAAACT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
27 2 0.06
28 30 0.88
29 2 0.06
ACGTcount: A:0.56, C:0.11, G:0.00, T:0.33
Consensus pattern (28 bp):
ATAATATATAACTTAAACTAACAAACTA
Found at i:7406687 original size:21 final size:21
Alignment explanation
Indices: 7406654--7406702 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
7406644 CTAATATAAT
7406654 ATAACTTAAACTAACAAACTA
1 ATAACTTAAACTAACAAACTA
* *
7406675 ATAATTTATACTAACAAACTA
1 ATAACTTAAACTAACAAACTA
7406696 ATTAACT
1 A-TAACT
7406703 AGATTTTAGT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.53, C:0.16, G:0.00, T:0.31
Consensus pattern (21 bp):
ATAACTTAAACTAACAAACTA
Found at i:7407383 original size:29 final size:29
Alignment explanation
Indices: 7407306--7407369 Score: 110
Period size: 29 Copynumber: 2.2 Consensus size: 29
7407296 ATACACACAT
* *
7407306 GTCGCTCGGATGCCATGGCGACCTCCAAG
1 GTCGCCCGAATGCCATGGCGACCTCCAAG
7407335 GTCGCCCGAATGCCATGGCGACCTCCAAG
1 GTCGCCCGAATGCCATGGCGACCTCCAAG
7407364 GTCGCC
1 GTCGCC
7407370 TGGATTGCAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.17, C:0.38, G:0.30, T:0.16
Consensus pattern (29 bp):
GTCGCCCGAATGCCATGGCGACCTCCAAG
Found at i:7408059 original size:12 final size:10
Alignment explanation
Indices: 7408027--7408058 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
7408017 TTTTATTACA
7408027 TCAAATTCTC
1 TCAAATTCTC
7408037 TCAAATTCTC
1 TCAAATTCTC
*
7408047 TCAAATACTC
1 TCAAATTCTC
7408057 TC
1 TC
7408059 TTTTTAAGGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.31, C:0.31, G:0.00, T:0.38
Consensus pattern (10 bp):
TCAAATTCTC
Found at i:7408308 original size:110 final size:111
Alignment explanation
Indices: 7408168--7408388 Score: 390
Period size: 110 Copynumber: 2.0 Consensus size: 111
7408158 TGAAAATCAT
* *
7408168 ATATCTCTACACTTTGCTGATGCGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
1 ATATCTCGACACTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
* *
7408233 TATTTAGTT-ATTTATTTAACGCATGATTATTAGATTAAGAATTAA
66 TAATTAGTTGATTCATTTAACGCATGATTATTAGATTAAGAATTAA
7408278 ATATCTCGACACTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
1 ATATCTCGACACTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
*
7408343 TAATTAGTTGATTCATTTAATGCATGATTATTAGATTAAGAATTAA
66 TAATTAGTTGATTCATTTAACGCATGATTATTAGATTAAGAATTAA
7408389 TTTTTGTAAT
Statistics
Matches: 105, Mismatches: 5, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
110 71 0.68
111 34 0.32
ACGTcount: A:0.35, C:0.09, G:0.11, T:0.44
Consensus pattern (111 bp):
ATATCTCGACACTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
TAATTAGTTGATTCATTTAACGCATGATTATTAGATTAAGAATTAA
Found at i:7410767 original size:51 final size:51
Alignment explanation
Indices: 7410644--7410768 Score: 196
Period size: 51 Copynumber: 2.5 Consensus size: 51
7410634 TTATACAAAA
*
7410644 CGCGGTACCTGCCCCGCGCTATATAAAATTATGTCATGAGTAAAGATATGT
1 CGCGGTACCTGCCCCGCGCTATATAAAATTATGTCAGGAGTAAAGATATGT
* * ** *
7410695 CGCCGTACATGCCCCATGCTATATAAAATTATGTCAGGAGTAAAGGTATGT
1 CGCGGTACCTGCCCCGCGCTATATAAAATTATGTCAGGAGTAAAGATATGT
7410746 CGCGGTACCTGCCCCGCGCTATA
1 CGCGGTACCTGCCCCGCGCTATA
7410769 CCCCTATGTG
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
51 64 1.00
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26
Consensus pattern (51 bp):
CGCGGTACCTGCCCCGCGCTATATAAAATTATGTCAGGAGTAAAGATATGT
Found at i:7410856 original size:51 final size:51
Alignment explanation
Indices: 7410780--7410905 Score: 164
Period size: 51 Copynumber: 2.5 Consensus size: 51
7410770 CCCTATGTGG
* * * * * *
7410780 CGTATAGCGTGCTGCAGGGGCCGCGCTATA-CCCACGTGTATGCCAGATCCC
1 CGTATAGCGCGATGCAGGGGGCGCGCTATACCCCACGTG-ACGCCAAATCAC
* *
7410831 CGTATAGCGCGGTGCAGGGGGCGCGCTATACCCCACGTGACGCCAAATCAT
1 CGTATAGCGCGATGCAGGGGGCGCGCTATACCCCACGTGACGCCAAATCAC
7410882 CGTATAGCGCGATGCAGGGGGCGC
1 CGTATAGCGCGATGCAGGGGGCGC
7410906 ACTTTACTGC
Statistics
Matches: 66, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
51 58 0.88
52 8 0.12
ACGTcount: A:0.19, C:0.31, G:0.33, T:0.17
Consensus pattern (51 bp):
CGTATAGCGCGATGCAGGGGGCGCGCTATACCCCACGTGACGCCAAATCAC
Found at i:7419414 original size:34 final size:33
Alignment explanation
Indices: 7419376--7419442 Score: 89
Period size: 34 Copynumber: 2.0 Consensus size: 33
7419366 AGTATCATAT
* *
7419376 ATATTATGGGTTATAATGAGTTTTGTATAAAATA
1 ATATTATAGATTATAATGAG-TTTGTATAAAATA
* *
7419410 ATATTATATATTATCATGAGTTTGTATAAAATA
1 ATATTATAGATTATAATGAGTTTGTATAAAATA
7419443 CTTTAGTAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
33 13 0.45
34 16 0.55
ACGTcount: A:0.40, C:0.01, G:0.13, T:0.45
Consensus pattern (33 bp):
ATATTATAGATTATAATGAGTTTGTATAAAATA
Found at i:7419691 original size:50 final size:51
Alignment explanation
Indices: 7419560--7419691 Score: 151
Period size: 51 Copynumber: 2.6 Consensus size: 51
7419550 CACCCGTAGC
* *
7419560 AGTAAAGCGCGCCCCCTGCAT-CGCGCTATACGCAGATTTGGCGCCATGTGA
1 AGTATAGCGCGCCCCCTG-ATCCGCGCTATACGCAGATTTGGCGCCACGTGA
** * * **
7419611 AGTATAGCGCGCCCCCTGCCCCGTGATATACGGTGATTTGGCGCCACGTG-
1 AGTATAGCGCGCCCCCTGATCCGCGCTATACGCAGATTTGGCGCCACGTGA
* *
7419661 GGTATAGCGCGCCCCTTGATCCGCGCTATAC
1 AGTATAGCGCGCCCCCTGATCCGCGCTATAC
7419692 CTGGTTATCT
Statistics
Matches: 66, Mismatches: 14, Indels: 3
0.80 0.17 0.04
Matches are distributed among these distances:
50 25 0.38
51 41 0.62
ACGTcount: A:0.18, C:0.33, G:0.28, T:0.21
Consensus pattern (51 bp):
AGTATAGCGCGCCCCCTGATCCGCGCTATACGCAGATTTGGCGCCACGTGA
Found at i:7419908 original size:17 final size:17
Alignment explanation
Indices: 7419868--7419911 Score: 61
Period size: 18 Copynumber: 2.5 Consensus size: 17
7419858 TTTTAATATT
7419868 ATATATTTAATTTATTTA
1 ATAT-TTTAATTTATTTA
*
7419886 AGTATTTTACTTTATTTA
1 A-TATTTTAATTTATTTA
7419904 ATATTTTA
1 ATATTTTA
7419912 GTAATATAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 7 0.29
18 14 0.58
19 3 0.12
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.61
Consensus pattern (17 bp):
ATATTTTAATTTATTTA
Found at i:7420169 original size:111 final size:111
Alignment explanation
Indices: 7419975--7420196 Score: 399
Period size: 111 Copynumber: 2.0 Consensus size: 111
7419965 TGAAAATCAT
* * *
7419975 ATATCTCTACACTTTGCTGATACGATAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAT
1 ATATCTCGACACTTTGCTAATACGATAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
*
7420040 TAATTAGTTGATTTATTTAATGCATGATTATTAGATTAAGAATTAA
66 TAATTAATTGATTTATTTAATGCATGATTATTAGATTAAGAATTAA
*
7420086 ATATCTCGACACTTTGCTAATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
1 ATATCTCGACACTTTGCTAATACGATAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
7420151 TAATTAATTGATTTATTTAATGCATGATTATTAGATTAAGAATTAA
66 TAATTAATTGATTTATTTAATGCATGATTATTAGATTAAGAATTAA
7420197 TTTTTGTAAT
Statistics
Matches: 106, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
111 106 1.00
ACGTcount: A:0.37, C:0.08, G:0.10, T:0.45
Consensus pattern (111 bp):
ATATCTCGACACTTTGCTAATACGATAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
TAATTAATTGATTTATTTAATGCATGATTATTAGATTAAGAATTAA
Found at i:7430883 original size:8 final size:8
Alignment explanation
Indices: 7430870--7430922 Score: 65
Period size: 8 Copynumber: 6.8 Consensus size: 8
7430860 TGTTAGTATT
7430870 TTATTTAA
1 TTATTTAA
7430878 TTATTTAA
1 TTATTTAA
7430886 TTATTGT-A
1 TTATT-TAA
7430894 TTATTTAA
1 TTATTTAA
**
7430902 TT-TTTTT
1 TTATTTAA
7430909 TTATTTAA
1 TTATTTAA
7430917 TTATTT
1 TTATTT
7430923 TATTTTTTCA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
7 6 0.16
8 31 0.82
9 1 0.03
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (8 bp):
TTATTTAA
Found at i:7431029 original size:80 final size:80
Alignment explanation
Indices: 7430931--7431087 Score: 262
Period size: 80 Copynumber: 2.0 Consensus size: 80
7430921 TTTATTTTTT
*
7430931 CAGTTATAAAATGAAAAGTGGTCATTGAATAATTATATTCGGATTTTTC-GACTTTTAAACTTTT
1 CAGTTATAAAATGAAAAGTGGTCATTGAATAATTATATTCGGATTTCTCGGA-TTTTAAACTTTT
7430995 CTCTCGGCTATAATTG
65 CTCTCGGCTATAATTG
* *
7431011 CAGTTATAAAATGGAAAGTGGTTATTGAATAATTATATTCGGATTTCTCGGATTTTAAACTTTTC
1 CAGTTATAAAATGAAAAGTGGTCATTGAATAATTATATTCGGATTTCTCGGATTTTAAACTTTTC
*
7431076 TCTCGGTTATAA
66 TCTCGGCTATAA
7431088 ATACACTCTC
Statistics
Matches: 72, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
80 70 0.97
81 2 0.03
ACGTcount: A:0.31, C:0.11, G:0.16, T:0.41
Consensus pattern (80 bp):
CAGTTATAAAATGAAAAGTGGTCATTGAATAATTATATTCGGATTTCTCGGATTTTAAACTTTTC
TCTCGGCTATAATTG
Found at i:7431279 original size:16 final size:16
Alignment explanation
Indices: 7431258--7431301 Score: 79
Period size: 16 Copynumber: 2.8 Consensus size: 16
7431248 TTATAACTGC
7431258 AAAAAAATTAAATAAT
1 AAAAAAATTAAATAAT
7431274 AAAAAAATTAAATAAT
1 AAAAAAATTAAATAAT
*
7431290 AAAATAATTAAA
1 AAAAAAATTAAA
7431302 AAAATACTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (16 bp):
AAAAAAATTAAATAAT
Found at i:7431307 original size:12 final size:11
Alignment explanation
Indices: 7431267--7431318 Score: 59
Period size: 11 Copynumber: 4.5 Consensus size: 11
7431257 CAAAAAAATT
7431267 AAATAATAAAA
1 AAATAATAAAA
*
7431278 AAATTAAATAATA
1 AAA-T-AATAAAA
7431291 AAATAATTAAAA
1 AAATAA-TAAAA
*
7431303 AAATACTAAAA
1 AAATAATAAAA
7431314 AAATA
1 AAATA
7431319 TGATTAAATT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
11 15 0.43
12 11 0.31
13 9 0.26
ACGTcount: A:0.75, C:0.02, G:0.00, T:0.23
Consensus pattern (11 bp):
AAATAATAAAA
Found at i:7433778 original size:30 final size:29
Alignment explanation
Indices: 7433738--7433832 Score: 118
Period size: 30 Copynumber: 3.2 Consensus size: 29
7433728 ACGTGGGGGC
* *
7433738 ATGGTGGTGGCATGGGATATTGAATATAAA
1 ATGGTAGTGGCATGGGATGTTGAATA-AAA
7433768 ATGGTAGTGGCATGGGATGTTGAATAAAAA
1 ATGGTAGTGGCATGGGATGTTGAAT-AAAA
* **
7433798 ATTGTAGTAACATGGGATGTTGAATAAAA
1 ATGGTAGTGGCATGGGATGTTGAATAAAA
7433827 TATGGT
1 -ATGGT
7433833 GGAATAAAAA
Statistics
Matches: 57, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
29 4 0.07
30 52 0.91
31 1 0.02
ACGTcount: A:0.36, C:0.03, G:0.31, T:0.31
Consensus pattern (29 bp):
ATGGTAGTGGCATGGGATGTTGAATAAAA
Found at i:7434224 original size:91 final size:90
Alignment explanation
Indices: 7434035--7434286 Score: 362
Period size: 91 Copynumber: 2.8 Consensus size: 90
7434025 GTGATGCAAG
* * **
7434035 GTTGAATAAGTTCTTCTGATTATGAACTTCTTCTAGCTC-TATCGGATGAGTTCTTCTCATTATG
1 GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGT-T-GGATGAGTTCTTCTCATTATG
* * * **
7434099 AACTCTCCGCTGTAAATGTTGATGCAA
64 AACTCTCCACTGGAAATCTTGAACCAA
*
7434126 GATTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGATAAGTTCTTCTCATTATGA
1 G-TTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGATGAGTTCTTCTCATTATGA
7434191 ACTCTCCACTGGAAATCTTGAACCAAA
65 ACTCTCCACTGGAAATCTTGAACC-AA
*
7434218 GTTGAACAAGTTCTTCTTATTATGAACTTCTTCTCCCTCGTTGGATGAGTTCTTCTCATTATGAA
1 GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGATGAGTTCTTCTCATTATGAA
7434283 CTCT
66 CTCT
7434287 TTATTTGAAA
Statistics
Matches: 146, Mismatches: 12, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
91 107 0.73
92 38 0.26
93 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.15, T:0.39
Consensus pattern (90 bp):
GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGATGAGTTCTTCTCATTATGAA
CTCTCCACTGGAAATCTTGAACCAA
Found at i:7434845 original size:36 final size:36
Alignment explanation
Indices: 7434802--7435158 Score: 208
Period size: 36 Copynumber: 10.0 Consensus size: 36
7434792 TGAGATAGAT
7434802 TTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAA
1 TTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAA
* *
7434838 TTAGTTTCAAGGGAAAC-GATCTCAA-AG-G-----T
1 TTTGTTTCAAGGGAAACTG-TCTCAAGAGAGACAAAA
* * *
7434867 TTGTGTTTCAAGAGAAAATGTCTCAAGGGAGACAAAA
1 TT-TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAA
* * * *
7434904 CTTATTTCAAGGGAAATTGTCTCAAGAGAGATAAAA
1 TTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAA
* * * *
7434940 TTTGTTTCACGGGAAA-TATATTC-A-A-AG----AT
1 TTTGTTTCAAGGGAAACTGT-CTCAAGAGAGACAAAA
*
7434969 TTTGTTTCAAGGGAAACTGTATCAAGAGAGACAAAA
1 TTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAA
* * * *
7435005 TTTGTTTCAAGGGAAATTATCTCAGGAGAGATAAAA
1 TTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAA
** * *
7435041 TCTTTTGTTTCAAGGGAAACTACCTCAAGCGAGATAAAA
1 ---TTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAA
** *
7435080 TCTTCTGTTTCAAGGGAAACTACCTCAAGCGAG-CTAAAA
1 --TT-TGTTTCAAGGGAAACTGTCTCAAGAGAGAC-AAAA
* * * * *
7435119 TCTTCTATTTCAAGTGAAACTATCTCAAGCGAGATAAAA
1 --TT-TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAA
7435158 T
1 T
7435159 CTTCTGTTTA
Statistics
Matches: 257, Mismatches: 39, Indels: 49
0.74 0.11 0.14
Matches are distributed among these distances:
29 20 0.08
30 21 0.08
31 3 0.01
32 3 0.01
33 2 0.01
34 2 0.01
35 6 0.02
36 98 0.38
37 2 0.01
38 2 0.01
39 98 0.38
ACGTcount: A:0.38, C:0.14, G:0.20, T:0.28
Consensus pattern (36 bp):
TTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAA
Found at i:7435028 original size:101 final size:102
Alignment explanation
Indices: 7434802--7435060 Score: 333
Period size: 101 Copynumber: 2.5 Consensus size: 102
7434792 TGAGATAGAT
* * * *
7434802 TTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTAGTTTCAAGGGAAACGATCTCAAAGGT
1 TTTGTTTCAAGGGAAATTGTCTCAAGAGAGATAAAATTTGTTTCAAGGGAAACGATCTCAAAGAT
* *
7434867 TTGTGTTTCAAGAGAAAATGTCTCAAGGGAGACAAAA
66 TTGTGTTTCAAGAGAAAATGTATCAAGAGAGACAAAA
* * * * *
7434904 CTTATTTCAAGGGAAATTGTCTCAAGAGAGATAAAATTTGTTTCACGGGAAA-TATATTCAAAGA
1 TTTGTTTCAAGGGAAATTGTCTCAAGAGAGATAAAATTTGTTTCAAGGGAAACGAT-CTCAAAGA
* *
7434968 TTT-TGTTTCAAGGGAAACTGTATCAAGAGAGACAAAA
65 TTTGTGTTTCAAGAGAAAATGTATCAAGAGAGACAAAA
* *
7435005 TTTGTTTCAAGGGAAATTATCTCAGGAGAGATAAAATCTTTTGTTTCAAGGGAAAC
1 TTTGTTTCAAGGGAAATTGTCTCAAGAGAGATAAAA---TTTGTTTCAAGGGAAAC
7435061 TACCTCAAGC
Statistics
Matches: 134, Mismatches: 18, Indels: 7
0.84 0.11 0.04
Matches are distributed among these distances:
101 64 0.48
102 55 0.41
104 15 0.11
ACGTcount: A:0.38, C:0.12, G:0.22, T:0.29
Consensus pattern (102 bp):
TTTGTTTCAAGGGAAATTGTCTCAAGAGAGATAAAATTTGTTTCAAGGGAAACGATCTCAAAGAT
TTGTGTTTCAAGAGAAAATGTATCAAGAGAGACAAAA
Found at i:7435056 original size:39 final size:39
Alignment explanation
Indices: 7434971--7435280 Score: 369
Period size: 39 Copynumber: 8.0 Consensus size: 39
7434961 TCAAAGATTT
* * * *
7434971 TGTTTCAAGGGAAACTGTATCAAGAGAGACAAAA--TT-
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
* * * *
7435007 TGTTTCAAGGGAAATTATCTCAGGAGAGATAAAATCTTT
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
*
7435046 TGTTTCAAGGGAAACTACCTCAAGCGAGATAAAATCTTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
* *
7435085 TGTTTCAAGGGAAACTACCTCAAGCGAGCTAAAATCTTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
* *
7435124 TATTTCAAGTGAAACTATCTCAAGCGAGATAAAATCTTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
*
7435163 TGTTT-AGAGTGAAACTATCTCAAGCGAGATAAAATCTTC
1 TGTTTCA-AGGGAAACTATCTCAAGCGAGATAAAATCTTC
* * *
7435202 TGTTT-AGAGTGAAACTATCTCAAGCGAGATAAAATATTA
1 TGTTTCA-AGGGAAACTATCTCAAGCGAGATAAAATCTTC
** * * *
7435241 TGTTTCGTGTGAAATTATCTCAAGCAAGATAAAATCTTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
7435280 T
1 T
7435281 TTAAAAATAA
Statistics
Matches: 245, Mismatches: 24, Indels: 7
0.89 0.09 0.03
Matches are distributed among these distances:
36 29 0.12
38 3 0.01
39 213 0.87
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (39 bp):
TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
Found at i:7438831 original size:15 final size:15
Alignment explanation
Indices: 7438813--7438843 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
7438803 CATTGATCCC
*
7438813 AAAATAATTGTTCCT
1 AAAATAACTGTTCCT
7438828 AAAATAACTGTTCCT
1 AAAATAACTGTTCCT
7438843 A
1 A
7438844 GAACAATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.42, C:0.16, G:0.06, T:0.35
Consensus pattern (15 bp):
AAAATAACTGTTCCT
Found at i:7441945 original size:30 final size:30
Alignment explanation
Indices: 7441910--7441974 Score: 112
Period size: 30 Copynumber: 2.2 Consensus size: 30
7441900 ACGTGGGGGC
*
7441910 ATGGTAGTGGCATGGGATGTTGAATAAAAA
1 ATGGTAGTGGCATGAGATGTTGAATAAAAA
*
7441940 ATGGTAGTGGCATGAGATGTTGAATAAAAT
1 ATGGTAGTGGCATGAGATGTTGAATAAAAA
7441970 ATGGT
1 ATGGT
7441975 GGAATAAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.35, C:0.03, G:0.32, T:0.29
Consensus pattern (30 bp):
ATGGTAGTGGCATGAGATGTTGAATAAAAA
Found at i:7449361 original size:44 final size:44
Alignment explanation
Indices: 7449306--7449420 Score: 203
Period size: 44 Copynumber: 2.6 Consensus size: 44
7449296 TTTGTGAGCA
7449306 CAATATCCTTCGTCGTGAAGTTGAAATCGTGGATGTTTCGAGTC
1 CAATATCCTTCGTCGTGAAGTTGAAATCGTGGATGTTTCGAGTC
* *
7449350 CAATATCCTTCGCCGTGAAGTTGAAATCGTGGATGTTTTGAGTC
1 CAATATCCTTCGTCGTGAAGTTGAAATCGTGGATGTTTCGAGTC
*
7449394 CAATATCCTTCGTCATGAAGTTGAAAT
1 CAATATCCTTCGTCGTGAAGTTGAAAT
7449421 TGGCTCTGAA
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
44 67 1.00
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.34
Consensus pattern (44 bp):
CAATATCCTTCGTCGTGAAGTTGAAATCGTGGATGTTTCGAGTC
Found at i:7449575 original size:126 final size:126
Alignment explanation
Indices: 7449396--7449672 Score: 500
Period size: 126 Copynumber: 2.2 Consensus size: 126
7449386 TTTGAGTCCA
* *
7449396 ATATCCTTCGTCATGAAGTTGAAATTGGCTCTGAATGAAACTGGGAAGCCCCTTCATTGTGGAGT
1 ATATCCTTCGTCGTGAAGTTGAAATTGGCTCTGAATGAAACTGGGAAGCCCCTTCACTGTGGAGT
*
7449461 TGAGCTTTGAATTGGATATCCTTCGCTGTAAAGTTGAAATCCAATGTTATTTGTGAGCCCG
66 TGAGCTTTGAATTGGATATCCTTCGCTGTAAAGTTGAAATCCAATGTTATTTGTGAGCACG
* *
7449522 ATATCCTTCGTCGTGAAGTTGAAATTGGCTCTGAATGAAATTGGGAAGCCCCTTCGCTGTGGAGT
1 ATATCCTTCGTCGTGAAGTTGAAATTGGCTCTGAATGAAACTGGGAAGCCCCTTCACTGTGGAGT
*
7449587 TGAGCTTTGAATTGGATATCCTTCGCTGTAAAGTTGAAATCCAATGTTGTTTGTGAGCACG
66 TGAGCTTTGAATTGGATATCCTTCGCTGTAAAGTTGAAATCCAATGTTATTTGTGAGCACG
7449648 ATATCCTTCGTCGTGAAGTTGAAAT
1 ATATCCTTCGTCGTGAAGTTGAAAT
7449673 CGTGGATGTT
Statistics
Matches: 145, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
126 145 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.34
Consensus pattern (126 bp):
ATATCCTTCGTCGTGAAGTTGAAATTGGCTCTGAATGAAACTGGGAAGCCCCTTCACTGTGGAGT
TGAGCTTTGAATTGGATATCCTTCGCTGTAAAGTTGAAATCCAATGTTATTTGTGAGCACG
Found at i:7457351 original size:39 final size:39
Alignment explanation
Indices: 7457297--7457376 Score: 117
Period size: 39 Copynumber: 2.1 Consensus size: 39
7457287 TTAACAGTAG
* *
7457297 ATGCAGCTTTCCCTTTGGTAGAGGATGAGTCAC-CGGGTA
1 ATGCAACTTTCCCTTTAGTAGAGGATGAGTC-CTCGGGTA
*
7457336 ATGCAACTTTCCCTTTAGTAGCGGATGAGTCCTCGGGTA
1 ATGCAACTTTCCCTTTAGTAGAGGATGAGTCCTCGGGTA
7457375 AT
1 AT
7457377 ACTCCGGGTG
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
38 1 0.03
39 36 0.97
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (39 bp):
ATGCAACTTTCCCTTTAGTAGAGGATGAGTCCTCGGGTA
Found at i:7464917 original size:14 final size:14
Alignment explanation
Indices: 7464898--7464931 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
7464888 ATCCAAACAT
7464898 TGGAAAATGTTTTC
1 TGGAAAATGTTTTC
7464912 TGGAAAATGTTTTC
1 TGGAAAATGTTTTC
*
7464926 TAGAAA
1 TGGAAA
7464932 TATAATTCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.35, C:0.06, G:0.21, T:0.38
Consensus pattern (14 bp):
TGGAAAATGTTTTC
Found at i:7467967 original size:20 final size:20
Alignment explanation
Indices: 7467942--7468034 Score: 96
Period size: 21 Copynumber: 4.5 Consensus size: 20
7467932 TTTTACCAAT
7467942 TCGCAATGCGAATAAGTAAA
1 TCGCAATGCGAATAAGTAAA
* ** *
7467962 TCGCAACGCGAATTGGGAAA
1 TCGCAATGCGAATAAGTAAA
7467982 TTCGCAATGCGAATAAGTAAA
1 -TCGCAATGCGAATAAGTAAA
* ** *
7468003 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAA-TAAGTAAA
7468024 TCGCAATGCGA
1 TCGCAATGCGA
7468035 TACTGACTAT
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
20 27 0.47
21 31 0.53
ACGTcount: A:0.39, C:0.18, G:0.25, T:0.18
Consensus pattern (20 bp):
TCGCAATGCGAATAAGTAAA
Found at i:7467984 original size:41 final size:41
Alignment explanation
Indices: 7467939--7468034 Score: 183
Period size: 41 Copynumber: 2.3 Consensus size: 41
7467929 CGATTTTACC
7467939 AATTCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGA
1 AATTCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGA
7467980 AATTCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGA
1 AATTCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGA
*
7468021 AAATCGCAATGCGA
1 AATTCGCAATGCGA
7468035 TACTGACTAT
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 54 1.00
ACGTcount: A:0.40, C:0.18, G:0.24, T:0.19
Consensus pattern (41 bp):
AATTCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGA
Found at i:7467988 original size:21 final size:20
Alignment explanation
Indices: 7467942--7468034 Score: 96
Period size: 20 Copynumber: 4.5 Consensus size: 20
7467932 TTTTACCAAT
*
7467942 TCGCAATGCGAATAAGTAAA
1 TCGCAATGCGAATAAGGAAA
* **
7467962 TCGCAACGCGAATTGGGAAA
1 TCGCAATGCGAATAAGGAAA
*
7467982 TTCGCAATGCGAATAAGTAAA
1 -TCGCAATGCGAATAAGGAAA
* **
7468003 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATAAGG-AAA
7468024 TCGCAATGCGA
1 TCGCAATGCGA
7468035 TACTGACTAT
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
20 29 0.50
21 29 0.50
ACGTcount: A:0.39, C:0.18, G:0.25, T:0.18
Consensus pattern (20 bp):
TCGCAATGCGAATAAGGAAA
Found at i:7468048 original size:20 final size:20
Alignment explanation
Indices: 7468023--7468116 Score: 80
Period size: 20 Copynumber: 4.7 Consensus size: 20
7468013 AATTGGGAAA
*
7468023 ATCGCAATGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* * * **
7468043 ATCGCAATGCGATAATAAAAA
1 ATCGCAACGCGATACT-GACT
* *
7468064 ATCGCAACGAGATACTTACT
1 ATCGCAACGCGATACTGACT
* *
7468084 TTCGCAACACGATACTGACT
1 ATCGCAACGCGATACTGACT
*
7468104 TTCGCAACGCGAT
1 ATCGCAACGCGAT
7468117 TTACTTAGCG
Statistics
Matches: 58, Mismatches: 15, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
20 44 0.76
21 14 0.24
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.23
Consensus pattern (20 bp):
ATCGCAACGCGATACTGACT
Found at i:7468097 original size:41 final size:41
Alignment explanation
Indices: 7468020--7468097 Score: 102
Period size: 41 Copynumber: 1.9 Consensus size: 41
7468010 GCGAATTGGG
* * **
7468020 AAAATCGCAATGCGATACTGACTATCGCAATGCGATAATAA
1 AAAATCGCAACGAGATACTGACTATCGCAACACGATAATAA
* *
7468061 AAAATCGCAACGAGATACTTACTTTCGCAACACGATA
1 AAAATCGCAACGAGATACTGACTATCGCAACACGATA
7468098 CTGACTTTCG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
41 31 1.00
ACGTcount: A:0.41, C:0.22, G:0.15, T:0.22
Consensus pattern (41 bp):
AAAATCGCAACGAGATACTGACTATCGCAACACGATAATAA
Found at i:7468677 original size:19 final size:19
Alignment explanation
Indices: 7468634--7468698 Score: 76
Period size: 19 Copynumber: 3.4 Consensus size: 19
7468624 CGAGAATGAG
* *
7468634 AATCGCAACGCGGAAATGAC
1 AATCGCAACGC-GAAATAAA
*
7468654 TATCGCAACGCGAAATAAA
1 AATCGCAACGCGAAATAAA
**
7468673 AATCGCAACGCGAAACCAA
1 AATCGCAACGCGAAATAAA
7468692 AATCGCA
1 AATCGCA
7468699 TTGCGATTTT
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
19 29 0.74
20 10 0.26
ACGTcount: A:0.45, C:0.26, G:0.18, T:0.11
Consensus pattern (19 bp):
AATCGCAACGCGAAATAAA
Found at i:7468742 original size:20 final size:19
Alignment explanation
Indices: 7468694--7468859 Score: 136
Period size: 20 Copynumber: 9.1 Consensus size: 19
7468684 GAAACCAAAA
*
7468694 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
*
7468713 TCGCGTTGCGATTTTAATT
1 TCGCGTTGCGATTTTCATT
7468732 TCGCGGTTGCGATTTTCATT
1 TCGC-GTTGCGATTTTCATT
*
7468752 TCGCGTTGCGATTGTC---
1 TCGCGTTGCGATTTTCATT
* **
7468768 T-G-GTCGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
7468785 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* **
7468799 TCTCGTTGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
*
7468818 TCCGCGTTGCGATTCTCATT
1 T-CGCGTTGCGATTTTCATT
*
7468838 ATCTCGTTGCGATTTTCATT
1 -TCGCGTTGCGATTTTCATT
7468858 TC
1 TC
7468860 AACCAAAAGA
Statistics
Matches: 119, Mismatches: 15, Indels: 26
0.74 0.09 0.16
Matches are distributed among these distances:
14 20 0.17
15 1 0.01
16 3 0.03
17 3 0.03
18 1 0.01
19 41 0.34
20 49 0.41
21 1 0.01
ACGTcount: A:0.13, C:0.22, G:0.22, T:0.43
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:7468784 original size:33 final size:33
Alignment explanation
Indices: 7468747--7468834 Score: 140
Period size: 33 Copynumber: 2.6 Consensus size: 33
7468737 GTTGCGATTT
* *
7468747 TCATTTCGCGTTGCGATTGTCTGGTCGCGATAG
1 TCATTTCGCGTTGCGATTCTCTCGTCGCGATAG
*
7468780 TCATTTCGCGTTGCGATTCTCTCGTTGCGATAG
1 TCATTTCGCGTTGCGATTCTCTCGTCGCGATAG
7468813 TCATTTCCGCGTTGCGATTCTC
1 TCATTT-CGCGTTGCGATTCTC
7468835 ATTATCTCGT
Statistics
Matches: 51, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
33 36 0.71
34 15 0.29
ACGTcount: A:0.11, C:0.25, G:0.25, T:0.39
Consensus pattern (33 bp):
TCATTTCGCGTTGCGATTCTCTCGTCGCGATAG
Found at i:7470919 original size:42 final size:42
Alignment explanation
Indices: 7470859--7470981 Score: 122
Period size: 42 Copynumber: 2.9 Consensus size: 42
7470849 GCTCGACTCG
* * *
7470859 CCTATCATCCCTCAAGAGTCCACTCCTATCGTTGAAGAGGCC
1 CCTATCATCCCTCAAGAGTCCACTCCCACCGTTCAAGAGGCC
* * *
7470901 CCTATCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCC
1 CCTATCATCCCTCAAGAGTCCACTCCCACCGTTCAAGAGGCC
* * ** * *
7470943 ACTGTCATCGTTGAAGAGGTCC-CTCCCACCATTCAAGAG
1 CCTATCATCCCTCAAGA-GTCCACTCCCACCGTTCAAGAG
7470982 CCCGATTCAC
Statistics
Matches: 66, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
42 62 0.94
43 4 0.06
ACGTcount: A:0.23, C:0.37, G:0.18, T:0.23
Consensus pattern (42 bp):
CCTATCATCCCTCAAGAGTCCACTCCCACCGTTCAAGAGGCC
Found at i:7470939 original size:21 final size:21
Alignment explanation
Indices: 7470915--7470981 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
7470905 TCATTCCTCG
7470915 AGAGTCCCCTCCCACCGTTCA
1 AGAGTCCCCTCCCACCGTTCA
* * ** * *
7470936 AGAGGCCACTGTCATCGTTGA
1 AGAGTCCCCTCCCACCGTTCA
*
7470957 AGAGGT-CCCTCCCACCATTCA
1 AGA-GTCCCCTCCCACCGTTCA
7470978 AGAG
1 AGAG
7470982 CCCGATTCAC
Statistics
Matches: 32, Mismatches: 13, Indels: 3
0.67 0.27 0.06
Matches are distributed among these distances:
20 1 0.03
21 30 0.94
22 1 0.03
ACGTcount: A:0.24, C:0.36, G:0.21, T:0.19
Consensus pattern (21 bp):
AGAGTCCCCTCCCACCGTTCA
Found at i:7472359 original size:14 final size:14
Alignment explanation
Indices: 7472340--7472375 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
7472330 ATTGTTTAAT
7472340 TGATTTGTAAAAGG
1 TGATTTGTAAAAGG
*
7472354 TGATTTGTAAAAGT
1 TGATTTGTAAAAGG
7472368 TGATTTGT
1 TGATTTGT
7472376 TTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGG
Found at i:7472576 original size:19 final size:19
Alignment explanation
Indices: 7472554--7472671 Score: 67
Period size: 19 Copynumber: 6.7 Consensus size: 19
7472544 CGAAATTAAA
7472554 TTCGCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
*
7472573 TTCGCATTGCGA--TTC--
1 TTCGCGTTGCGATTTTCAT
* *
7472588 -CCTCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
*
7472606 TTCGCATTGCGA--TTC--
1 TTCGCGTTGCGATTTTCAT
*
7472621 -TCTCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
** ** *
7472639 TTCGTATTGCGATAGTAAT
1 TTCGCGTTGCGATTTTCAT
7472658 TTCCGCGTTGCGAT
1 TT-CGCGTTGCGAT
7472672 GGACATTAAG
Statistics
Matches: 71, Mismatches: 17, Indels: 21
0.65 0.16 0.19
Matches are distributed among these distances:
14 17 0.24
16 6 0.08
17 6 0.08
19 33 0.46
20 9 0.13
ACGTcount: A:0.14, C:0.23, G:0.20, T:0.43
Consensus pattern (19 bp):
TTCGCGTTGCGATTTTCAT
Found at i:7472600 original size:33 final size:33
Alignment explanation
Indices: 7472558--7472651 Score: 170
Period size: 33 Copynumber: 2.8 Consensus size: 33
7472548 ATTAAATTCG
7472558 CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
*
7472591 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
*
7472624 CGTTGCGATTTTCATTTCGTATTGCGAT
1 CGTTGCGATTTTCATTTCGCATTGCGAT
7472652 AGTAATTTCC
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 59 1.00
ACGTcount: A:0.13, C:0.23, G:0.19, T:0.45
Consensus pattern (33 bp):
CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
Found at i:7474923 original size:13 final size:13
Alignment explanation
Indices: 7474905--7474929 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7474895 CTTCGGGGAC
7474905 TTTTTCTTCTTCT
1 TTTTTCTTCTTCT
7474918 TTTTTCTTCTTC
1 TTTTTCTTCTTC
7474930 AGGATTATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTTTCTTCTTCT
Found at i:7475365 original size:20 final size:20
Alignment explanation
Indices: 7475259--7475373 Score: 79
Period size: 20 Copynumber: 5.7 Consensus size: 20
7475249 CGCTTTGAAA
*
7475259 ATCGCATTGCGATTATGT-ATT
1 ATCGCATTGCGA-TA-GTCAGT
* *
7475280 ATCGCGTTGCGAAAGTCAGT
1 ATCGCATTGCGATAGTCAGT
** * *
7475300 ATCGTGTTGCGAAAGTAAGT
1 ATCGCATTGCGATAGTCAGT
* * ** * *
7475320 ATCTCGTTGCGATTTTTTATT
1 ATCGCATTGCGA-TAGTCAGT
7475341 ATCGCATTGCGATAGTCAGT
1 ATCGCATTGCGATAGTCAGT
7475361 ATCGCATTGCGAT
1 ATCGCATTGCGAT
7475374 TTTCCCAATT
Statistics
Matches: 74, Mismatches: 18, Indels: 5
0.76 0.19 0.05
Matches are distributed among these distances:
19 2 0.03
20 48 0.65
21 24 0.32
ACGTcount: A:0.23, C:0.17, G:0.23, T:0.37
Consensus pattern (20 bp):
ATCGCATTGCGATAGTCAGT
Found at i:7475392 original size:41 final size:41
Alignment explanation
Indices: 7475362--7475457 Score: 147
Period size: 41 Copynumber: 2.3 Consensus size: 41
7475352 ATAGTCAGTA
* * *
7475362 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGAATTTCCCAATTCGCGTTGCGATTCACGTAT
* *
7475403 TCGCATTGCGAATTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGAATTTCCCAATTCGCGTTGCGATTCACGTAT
7475444 TCGCATTGCGAATT
1 TCGCATTGCGAATT
7475458 GGGAAAATTG
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 54 1.00
ACGTcount: A:0.19, C:0.24, G:0.18, T:0.40
Consensus pattern (41 bp):
TCGCATTGCGAATTTCCCAATTCGCGTTGCGATTCACGTAT
Found at i:7475406 original size:20 final size:20
Alignment explanation
Indices: 7475362--7475454 Score: 96
Period size: 20 Copynumber: 4.5 Consensus size: 20
7475352 ATAGTCAGTA
* **
7475362 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGA-TTTACTTAT
*
7475383 TCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTACTTAT
* **
7475403 TCGCATTGCGAATTTCCCAAT
1 TCGCATTGCG-ATTTACTTAT
*
7475424 TCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTACTTAT
7475444 TCGCATTGCGA
1 TCGCATTGCGA
7475455 ATTGGGAAAA
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
20 32 0.55
21 26 0.45
ACGTcount: A:0.18, C:0.25, G:0.18, T:0.39
Consensus pattern (20 bp):
TCGCATTGCGATTTACTTAT
Found at i:7477119 original size:34 final size:32
Alignment explanation
Indices: 7477081--7477143 Score: 74
Period size: 34 Copynumber: 1.9 Consensus size: 32
7477071 AAAATGAATG
*
7477081 AAAATCAATAAATAA-TAAATGAAGAATATAAGAT
1 AAAATCAA-AAAAAACTAAAT-AAGAA-ATAAGAT
*
7477115 AAAATTAAAAAAAACTAAATAAGAAATAA
1 AAAATCAAAAAAAACTAAATAAGAAATAA
7477144 AAAGAAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
32 4 0.15
33 10 0.38
34 12 0.46
ACGTcount: A:0.70, C:0.03, G:0.06, T:0.21
Consensus pattern (32 bp):
AAAATCAAAAAAAACTAAATAAGAAATAAGAT
Found at i:7477221 original size:18 final size:18
Alignment explanation
Indices: 7477190--7477242 Score: 72
Period size: 18 Copynumber: 2.9 Consensus size: 18
7477180 ATTTCGAAAG
*
7477190 TAAG-AAAATAAAATAAGA
1 TAAGTAAAAT-AAATAAAA
7477208 TAAGTAAAATAAATAAAA
1 TAAGTAAAATAAATAAAA
*
7477226 TAACTAAAATAAATAAA
1 TAAGTAAAATAAATAAA
7477243 CAAAAGCGTG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
18 27 0.84
19 5 0.16
ACGTcount: A:0.72, C:0.02, G:0.06, T:0.21
Consensus pattern (18 bp):
TAAGTAAAATAAATAAAA
Found at i:7477224 original size:9 final size:9
Alignment explanation
Indices: 7477194--7477242 Score: 62
Period size: 9 Copynumber: 5.3 Consensus size: 9
7477184 CGAAAGTAAG
7477194 AAAATAAAAT
1 AAAAT-AAAT
* *
7477204 AAGATAAGT
1 AAAATAAAT
7477213 AAAATAAAT
1 AAAATAAAT
*
7477222 AAAATAACT
1 AAAATAAAT
7477231 AAAATAAAT
1 AAAATAAAT
7477240 AAA
1 AAA
7477243 CAAAAGCGTG
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
9 29 0.88
10 4 0.12
ACGTcount: A:0.73, C:0.02, G:0.04, T:0.20
Consensus pattern (9 bp):
AAAATAAAT
Found at i:7478406 original size:3 final size:3
Alignment explanation
Indices: 7478387--7478435 Score: 64
Period size: 3 Copynumber: 16.3 Consensus size: 3
7478377 ATGAAAAGTA
* *
7478387 AAT AA- AAT AAC AAT AAT AAT AAT AAT AAT AAT AAAT ACT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT
7478432 AAT A
1 AAT A
7478436 TAACCTATAT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
2 2 0.05
3 35 0.88
4 3 0.08
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:7478511 original size:14 final size:14
Alignment explanation
Indices: 7478489--7478530 Score: 54
Period size: 12 Copynumber: 3.2 Consensus size: 14
7478479 TATTATACTT
7478489 AAAAA-AGTTTTCA
1 AAAAATAGTTTTCA
7478502 AAAAATAGTTTTC-
1 AAAAATAGTTTTCA
*
7478515 -AAAATAGTTTTTA
1 AAAAATAGTTTTCA
7478528 AAA
1 AAA
7478531 CCATATATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
12 11 0.44
13 5 0.20
14 9 0.36
ACGTcount: A:0.52, C:0.05, G:0.07, T:0.36
Consensus pattern (14 bp):
AAAAATAGTTTTCA
Found at i:7478552 original size:37 final size:37
Alignment explanation
Indices: 7478510--7478749 Score: 224
Period size: 37 Copynumber: 6.4 Consensus size: 37
7478500 CAAAAAATAG
* * *
7478510 TTTTCAAAATAGTTTTTAAAACCATATATTTTATAAT
1 TTTTCAAAATAGTTTTAAAAACTATATATTATATAAT
*
7478547 TTTTCAAAA-ATGTTTTTAAAACTATATATTATATAA-
1 TTTTCAAAATA-GTTTTAAAAACTATATATTATATAAT
*
7478583 TTTTCAAAA-ATGTTTTAAAAAACTATATACTATATAAT
1 TTTTCAAAATA-GTTTT-AAAAACTATATATTATATAAT
*
7478621 TTTT-AAAAT-GTTTTAAAAACTATATAATATATAAAT
1 TTTTCAAAATAGTTTTAAAAACTATATATTATAT-AAT
* * *
7478657 GCTTTCAAAAT-GTTTTCAAAACTATATATTATATATGT
1 -TTTTCAAAATAGTTTTAAAAACTATATATTATATA-AT
* * *
7478695 ATTTTAAAAATA-TTTTCAAAAACTATATAATATATAAA
1 -TTTTCAAAATAGTTTT-AAAAACTATATATTATATAAT
* *
7478733 TTTCCGAAAATTGTTTT
1 TTTTC-AAAATAGTTTT
7478750 CTGACAATTA
Statistics
Matches: 172, Mismatches: 19, Indels: 22
0.81 0.09 0.10
Matches are distributed among these distances:
35 17 0.10
36 25 0.15
37 61 0.35
38 48 0.28
39 21 0.12
ACGTcount: A:0.44, C:0.07, G:0.04, T:0.45
Consensus pattern (37 bp):
TTTTCAAAATAGTTTTAAAAACTATATATTATATAAT
Found at i:7478666 original size:28 final size:28
Alignment explanation
Indices: 7478611--7478666 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
7478601 AAAACTATAT
* * *
7478611 ACTATATAATTTTTAAAATGTTTTAAAA
1 ACTATATAATATATAAAATGTTTCAAAA
7478639 ACTATATAATATAT-AAATGCTTTCAAAA
1 ACTATATAATATATAAAATG-TTTCAAAA
7478667 TGTTTTCAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 5 0.21
28 19 0.79
ACGTcount: A:0.48, C:0.07, G:0.04, T:0.41
Consensus pattern (28 bp):
ACTATATAATATATAAAATGTTTCAAAA
Found at i:7478817 original size:2 final size:2
Alignment explanation
Indices: 7478810--7478901 Score: 184
Period size: 2 Copynumber: 46.0 Consensus size: 2
7478800 ACTATACATG
7478810 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7478852 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7478894 TA TA TA TA
1 TA TA TA TA
7478902 ATCAAATAAA
Statistics
Matches: 90, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 90 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7479748 original size:165 final size:166
Alignment explanation
Indices: 7479465--7480251 Score: 952
Period size: 165 Copynumber: 4.7 Consensus size: 166
7479455 CAATTTTGTC
* * * * * * *
7479465 GACAGATAGCCCTTCTAGCCTTGAGCTATGCTGTAAATTTGGTTTG-CCTCTG-AGCTGAGTGTA
1 GACAGATAACCCTTCTAGACTTAAGTTATGCTGCAAA--TGATATGCCCTC-GAAGCTGAGTGTA
* * * * *
7479528 ACCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTATCGACTTAAGTTATGCTGCAAATGATA
63 ATCGAACTCGAGGGTC--T--TTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATA
* * **
7479593 TGCCTTAGAGTTGAGCGTAGTCGAACTTGAAGGTCTTTTAG-T
124 TGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTAGTT
* * ** * *
7479635 GACATATAACCCTTCTAGTCTTGGGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATC
1 GACAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATATGCCCTCGAAGCTGAGTGTAATC
* *
7479700 GAACTTGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATATGCCTTG
66 GAACTCGAGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATATGCCTTG
*
7479765 GAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGGTT
131 GAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTAGTT
* * * *
7479801 GGCAGATAACCCTTATCGACTTAAGTTATGCTACAAATGATATGCCCTCGAAGCTGAGTGTAATC
1 GACAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATATGCCCTCGAAGCTGAGTGTAATC
* * *
7479866 AAACTCGAGAGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTG
66 GAACTCGAGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATATGCCTTG
* * *
7479931 GAGCTGAGCATAGTCGAACCCGAAGGTCTTTTAG-T
131 GAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTAGTT
* ** * * * *
7479966 GACAGATAACCCTTCTAGCCTTGGGTTATGCTGTAAATGATGTACTCTCGAAGCTGAGTGTAATC
1 GACAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATATGCCCTCGAAGCTGAGTGTAATC
* *
7480031 GAACTTGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATATGCCTTG
66 GAACTCGAGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATATGCCTTG
*
7480096 GAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGGTT
131 GAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTAGTT
* * * ** *
7480132 GGCAGATAACCTTTCTTGACTTAAGTTATGCTGCAAATGATATGCCCTCGAAGCTGAGCATAGTC
1 GACAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATATGCCCTCGAAGCTGAGTGTAATC
* * * * * *
7480197 GAACTCGAAGGTCTTGGTGGCAGATAACCCTTCTTGCCTTGAGCTAAGCTGCAAA
66 GAACTCGAGGGTCTT--TGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAA
7480252 CGATTTGTTT
Statistics
Matches: 532, Mismatches: 79, Indels: 14
0.85 0.13 0.02
Matches are distributed among these distances:
165 222 0.42
166 211 0.40
167 1 0.00
168 39 0.07
169 27 0.05
170 32 0.06
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (166 bp):
GACAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATATGCCCTCGAAGCTGAGTGTAATC
GAACTCGAGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATATGCCTTG
GAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTAGTT
Found at i:7480155 original size:331 final size:331
Alignment explanation
Indices: 7479549--7480251 Score: 1147
Period size: 331 Copynumber: 2.1 Consensus size: 331
7479539 AGGTCTTTGG
* * * *
7479549 TTGGCAGATAACCCTTATCGACTTAAGTTATGCTGCAAATGATATGCCTTAGAGTTGAGCGTAGT
1 TTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATATGCCTTAGAGCTGAGCATAGT
** * * *
7479614 CGAACTTGAAGGTCTTTTAGTGACATATAACCCTTCTAGTCTTGGGTTATGCTGTAAATGATGTG
66 CGAACCCGAAGGTCTTTTAGTGACAGATAACCCTTCTAGCCTTGGGTTATGCTGTAAATGATGTA
7479679 CCCTCGAAGCTGAGTGTAATCGAACTTGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTA
131 CCCTCGAAGCTGAGTGTAATCGAACTTGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTA
7479744 TGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGGTTGGCAGATA
196 TGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGGTTGGCAGATA
**
7479809 ACCCTTATCGACTTAAGTTATGCTACAAATGATATGCCCTCGAAGCTGAGTGTAATCAAACTCG-
261 ACCCTTATCGACTTAAGTTATGCTACAAATGATATGCCCTCGAAGCTGAGCATAATCAAACTCGA
7479873 AGAGTCT
326 AG-GTCT
* * *
7479880 TTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCATAGT
1 TTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATATGCCTTAGAGCTGAGCATAGT
7479945 CGAACCCGAAGGTCTTTTAGTGACAGATAACCCTTCTAGCCTTGGGTTATGCTGTAAATGATGTA
66 CGAACCCGAAGGTCTTTTAGTGACAGATAACCCTTCTAGCCTTGGGTTATGCTGTAAATGATGTA
*
7480010 CTCTCGAAGCTGAGTGTAATCGAACTTGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTA
131 CCCTCGAAGCTGAGTGTAATCGAACTTGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTA
7480075 TGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGGTTGGCAGATA
196 TGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGGTTGGCAGATA
* * * * * *
7480140 ACCTTTCTTGACTTAAGTTATGCTGCAAATGATATGCCCTCGAAGCTGAGCATAGTCGAACTCGA
261 ACCCTTATCGACTTAAGTTATGCTACAAATGATATGCCCTCGAAGCTGAGCATAATCAAACTCGA
7480205 AGGTCT
326 AGGTCT
* * * *
7480211 TGGTGGCAGATAACCCTTCTTGCCTTGAGCTAAGCTGCAAA
1 T--TGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAA
7480252 CGATTTGTTT
Statistics
Matches: 343, Mismatches: 26, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
331 308 0.90
332 2 0.01
333 33 0.10
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.30
Consensus pattern (331 bp):
TTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATATGCCTTAGAGCTGAGCATAGT
CGAACCCGAAGGTCTTTTAGTGACAGATAACCCTTCTAGCCTTGGGTTATGCTGTAAATGATGTA
CCCTCGAAGCTGAGTGTAATCGAACTTGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTA
TGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGGTTGGCAGATA
ACCCTTATCGACTTAAGTTATGCTACAAATGATATGCCCTCGAAGCTGAGCATAATCAAACTCGA
AGGTCT
Found at i:7487910 original size:21 final size:21
Alignment explanation
Indices: 7487884--7487923 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
7487874 TAGAACCCCA
*
7487884 GGGGGGTATCGATTCCCCTGT
1 GGGGGGAATCGATTCCCCTGT
*
7487905 GGGGGGAATCGGTTCCCCT
1 GGGGGGAATCGATTCCCCT
7487924 TCAAATGGGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.10, C:0.25, G:0.40, T:0.25
Consensus pattern (21 bp):
GGGGGGAATCGATTCCCCTGT
Found at i:7491810 original size:22 final size:21
Alignment explanation
Indices: 7491768--7491807 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
7491758 GAGTTTGTTT
*
7491768 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTAAAACA
7491789 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
7491808 ACAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:7495198 original size:18 final size:18
Alignment explanation
Indices: 7495167--7495216 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
7495157 ATTTCGAAAG
*
7495167 TAAG-AAAATAAAATAAGA
1 TAAGTAAAAT-AAATAAAA
7495185 TAAGTAAAATAAATAAAA
1 TAAGTAAAATAAATAAAA
*
7495203 TAACTAAAATAAAT
1 TAAGTAAAATAAAT
7495217 TAACAAAAGC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
18 24 0.83
19 5 0.17
ACGTcount: A:0.70, C:0.02, G:0.06, T:0.22
Consensus pattern (18 bp):
TAAGTAAAATAAATAAAA
Found at i:7495201 original size:9 final size:9
Alignment explanation
Indices: 7495171--7495216 Score: 56
Period size: 9 Copynumber: 5.0 Consensus size: 9
7495161 CGAAAGTAAG
7495171 AAAATAAAAT
1 AAAAT-AAAT
* *
7495181 AAGATAAGT
1 AAAATAAAT
7495190 AAAATAAAT
1 AAAATAAAT
*
7495199 AAAATAACT
1 AAAATAAAT
7495208 AAAATAAAT
1 AAAATAAAT
7495217 TAACAAAAGC
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
9 26 0.87
10 4 0.13
ACGTcount: A:0.72, C:0.02, G:0.04, T:0.22
Consensus pattern (9 bp):
AAAATAAAT
Found at i:7496387 original size:3 final size:3
Alignment explanation
Indices: 7496368--7496413 Score: 58
Period size: 3 Copynumber: 15.3 Consensus size: 3
7496358 ATTAAAAGTA
* *
7496368 AAT AA- AAT AAC AAT AAT AAT AAT AAT AAT AAAT ACT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT
7496413 A
1 A
7496414 TAACATATAT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
2 2 0.05
3 32 0.86
4 3 0.08
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:7496489 original size:14 final size:13
Alignment explanation
Indices: 7496467--7496497 Score: 53
Period size: 14 Copynumber: 2.3 Consensus size: 13
7496457 TATTATGCTT
7496467 AAAAAAGTTTTCA
1 AAAAAAGTTTTCA
7496480 AAAAATAGTTTTCA
1 AAAAA-AGTTTTCA
7496494 AAAA
1 AAAA
7496498 TGTTTTTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.29
14 12 0.71
ACGTcount: A:0.58, C:0.06, G:0.06, T:0.29
Consensus pattern (13 bp):
AAAAAAGTTTTCA
Found at i:7496496 original size:13 final size:13
Alignment explanation
Indices: 7496467--7496508 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
7496457 TATTATGCTT
7496467 AAAAA-AGTTTTC
1 AAAAATAGTTTTC
7496479 AAAAAATAGTTTTC
1 -AAAAATAGTTTTC
*
7496493 AAAAAT-GTTTTT
1 AAAAATAGTTTTC
7496505 AAAA
1 AAAA
7496509 CCATATATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
12 9 0.33
13 11 0.41
14 7 0.26
ACGTcount: A:0.52, C:0.05, G:0.07, T:0.36
Consensus pattern (13 bp):
AAAAATAGTTTTC
Found at i:7496530 original size:37 final size:37
Alignment explanation
Indices: 7496488--7496784 Score: 268
Period size: 37 Copynumber: 7.9 Consensus size: 37
7496478 CAAAAAATAG
*
7496488 TTTTCAAAAATGTTTTTAAAACCATATATTATATAAT
1 TTTTCAAAAATGTTTTTAAAACTATATATTATATAAT
7496525 TTTTCAAAAATGTTTTTAAAACTATATATTATATAAT
1 TTTTCAAAAATGTTTTTAAAACTATATATTATATAAT
* *
7496562 TTTT-AAAAATGTTTTAAAAAACTATATACTATATAAT
1 TTTTCAAAAATGTTTT-TAAAACTATATATTATATAAT
*
7496599 TTTT--AAAAT-TTTTTAAAAACTATATAATATATAAAT
1 TTTTCAAAAATGTTTTT-AAAACTATATATTATAT-AAT
* *
7496635 GCTTTCAAAAATGTTTTCAAAACTATATATTATAT-AT
1 -TTTTCAAAAATGTTTTTAAAACTATATATTATATAAT
* ** * *
7496672 GTATGTT-AAAAATAATTTCAAAAACTATATACTATATAAA
1 -T-T-TTCAAAAAT-GTTTTTAAAACTATATATTATATAAT
* *
7496712 TTTTCGAAAATTGTTTTCTAACAATTATATATTATAT--T
1 TTTTC-AAAAATGTTTT-TAA-AACTATATATTATATAAT
* ** *
7496750 TTGTCAAAAACATTTTCACAAACTATATTATTATA
1 TTTTCAAAAATGTTTTTA-AAACTATA-TATTATA
7496785 CATACATATA
Statistics
Matches: 216, Mismatches: 27, Indels: 34
0.78 0.10 0.12
Matches are distributed among these distances:
35 20 0.09
36 26 0.12
37 87 0.40
38 15 0.07
39 50 0.23
40 18 0.08
ACGTcount: A:0.44, C:0.08, G:0.03, T:0.44
Consensus pattern (37 bp):
TTTTCAAAAATGTTTTTAAAACTATATATTATATAAT
Found at i:7496742 original size:113 final size:111
Alignment explanation
Indices: 7496494--7496784 Score: 292
Period size: 113 Copynumber: 2.6 Consensus size: 111
7496484 ATAGTTTTCA
* * * *
7496494 AAAATGTTTTT-AAAACCATATATTATA-T-AATTTTTCAAAAATGTTTTTAAAACTATATATTA
1 AAAAT-TTTTTAAAAACTATATAATATATTAAATCTTTCAAAAATGTTTTCAAAACTATATATTA
** *
7496556 TATAATTTTTAAAAATGTTTTAAAAAACTATATACTATATAATTTTT
65 TATAATTTTTAAAAATAATTTAAAAAACTATATACTATATAATTTTG
7496603 AAAATTTTTTAAAAACTATATAATATA-TAAATGCTTTCAAAAATGTTTTCAAAACTATATATTA
1 AAAATTTTTTAAAAACTATATAATATATTAAAT-CTTTCAAAAATGTTTTCAAAACTATATATTA
*
7496667 TAT-ATGTATGTTAAAAATAATTTCAAAAACTATATACTATATAAATTTTCG
65 TATAAT-T-T-TTAAAAATAATTTAAAAAACTATATACTATAT-AATTTT-G
** * * * **
7496718 AAAATTGTTTT-CTAAC-A-ATTATATATTATATTTTGTCAAAAACATTTTCACAAACTATATTA
1 AAAATT-TTTTAAAAACTATATAATATATTAAATCTT-TCAAAAATGTTTTCA-AAACTATA-TA
7496780 TTATA
62 TTATA
7496785 CATACATATA
Statistics
Matches: 154, Mismatches: 15, Indels: 19
0.82 0.08 0.10
Matches are distributed among these distances:
108 5 0.03
109 20 0.13
110 5 0.03
111 33 0.21
112 1 0.01
113 38 0.25
114 24 0.16
115 17 0.11
116 11 0.07
ACGTcount: A:0.45, C:0.08, G:0.03, T:0.44
Consensus pattern (111 bp):
AAAATTTTTTAAAAACTATATAATATATTAAATCTTTCAAAAATGTTTTCAAAACTATATATTAT
ATAATTTTTAAAAATAATTTAAAAAACTATATACTATATAATTTTG
Found at i:7499978 original size:26 final size:26
Alignment explanation
Indices: 7499942--7499992 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
7499932 CAACCTTAGA
*
7499942 GGTTAAAAGGAAGTGTCCTCTCTAGT
1 GGTTAAAAGGAAATGTCCTCTCTAGT
7499968 GGTTAAAAGGAAATGTCCTCTCTAG
1 GGTTAAAAGGAAATGTCCTCTCTAG
7499993 AGGTCATGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (26 bp):
GGTTAAAAGGAAATGTCCTCTCTAGT
Found at i:7502903 original size:14 final size:13
Alignment explanation
Indices: 7502884--7502915 Score: 55
Period size: 13 Copynumber: 2.4 Consensus size: 13
7502874 TTTACCGGAT
7502884 AAAAAACCAGATTA
1 AAAAAACC-GATTA
7502898 AAAAAACCGATTA
1 AAAAAACCGATTA
7502911 AAAAA
1 AAAAA
7502916 CCGGTTTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 10 0.56
14 8 0.44
ACGTcount: A:0.69, C:0.12, G:0.06, T:0.12
Consensus pattern (13 bp):
AAAAAACCGATTA
Found at i:7502915 original size:12 final size:12
Alignment explanation
Indices: 7502883--7502918 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 12
7502873 TTTTACCGGA
7502883 TAAAAAACCAGAT
1 TAAAAAACC-GAT
7502896 TAAAAAAACCGAT
1 T-AAAAAACCGAT
7502909 TAAAAAACCG
1 TAAAAAACCG
7502919 GTTTTTATTC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 9 0.41
13 5 0.23
14 8 0.36
ACGTcount: A:0.61, C:0.17, G:0.08, T:0.14
Consensus pattern (12 bp):
TAAAAAACCGAT
Found at i:7505240 original size:21 final size:21
Alignment explanation
Indices: 7505216--7505257 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
7505206 AGTTTATTTT
7505216 TAAACTTTATTTCAATTATCG
1 TAAACTTTATTTCAATTATCG
*
7505237 TAAACTTTGTTTCAATTATCG
1 TAAACTTTATTTCAATTATCG
7505258 AACTTGAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.31, C:0.14, G:0.07, T:0.48
Consensus pattern (21 bp):
TAAACTTTATTTCAATTATCG
Found at i:7505309 original size:33 final size:33
Alignment explanation
Indices: 7505252--7505350 Score: 155
Period size: 33 Copynumber: 3.0 Consensus size: 33
7505242 TTTGTTTCAA
*
7505252 TTATCGAACTT-GAAATTTTTAAGTATTTGAAT
1 TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
7505284 TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
1 TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
* * *
7505317 TTATCAAACTTGGAAGTATTTAAGTATTTCAAT
1 TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
7505350 T
1 T
7505351 ATGTTGAGTT
Statistics
Matches: 62, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
32 11 0.18
33 51 0.82
ACGTcount: A:0.33, C:0.07, G:0.14, T:0.45
Consensus pattern (33 bp):
TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
Found at i:7506474 original size:24 final size:24
Alignment explanation
Indices: 7506429--7506478 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
7506419 TGGTGGTTGG
7506429 TTTAATGGATGTTTAAACTTTATT
1 TTTAATGGATGTTTAAACTTTATT
*
7506453 TTTAATGGTATGTTT-AAGTTTATT
1 TTTAATGG-ATGTTTAAACTTTATT
7506477 TT
1 TT
7506479 GGTTCTTTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 18 0.75
25 6 0.25
ACGTcount: A:0.26, C:0.02, G:0.14, T:0.58
Consensus pattern (24 bp):
TTTAATGGATGTTTAAACTTTATT
Found at i:7518628 original size:24 final size:23
Alignment explanation
Indices: 7518587--7518668 Score: 76
Period size: 23 Copynumber: 3.5 Consensus size: 23
7518577 ATTGACAAAT
* *
7518587 GTTAAACGAATATTTTCAAGAAC
1 GTTAAACGAACATGTTCAAGAAC
7518610 GTTAAAACGAACATGTTCACA-AAC
1 GTT-AAACGAACATGTTCA-AGAAC
* * **
7518634 ATTAAATGAACATGTTCGCGAAC
1 GTTAAACGAACATGTTCAAGAAC
*
7518657 GCTAAACGAACA
1 GTTAAACGAACA
7518669 ACTTAAAAAA
Statistics
Matches: 47, Mismatches: 9, Indels: 6
0.76 0.15 0.10
Matches are distributed among these distances:
23 28 0.60
24 18 0.38
25 1 0.02
ACGTcount: A:0.44, C:0.18, G:0.15, T:0.23
Consensus pattern (23 bp):
GTTAAACGAACATGTTCAAGAAC
Found at i:7520873 original size:14 final size:14
Alignment explanation
Indices: 7520854--7520880 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7520844 TTCTATTCTG
7520854 TTTTTCTTTCTTTT
1 TTTTTCTTTCTTTT
7520868 TTTTTCTTTCTTT
1 TTTTTCTTTCTTT
7520881 ACCATTCTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (14 bp):
TTTTTCTTTCTTTT
Found at i:7529875 original size:37 final size:37
Alignment explanation
Indices: 7529821--7529939 Score: 161
Period size: 37 Copynumber: 3.2 Consensus size: 37
7529811 ATGAGATTGG
7529821 AGCAAAGTCAATTTTAAGCCTTCACCGAAAAGGAGTGA
1 AGCAAA-TCAATTTTAAGCCTTCACCGAAAAGGAGTGA
*
7529859 AGCAAATCAATCTTAAGCCTTCACC-AAAGAGGAGTGA
1 AGCAAATCAATTTTAAGCCTTCACCGAAA-AGGAGTGA
* * * *
7529896 AGTAAA-CCATTTTAAGCCTTCACCGAAGAGTAGTGA
1 AGCAAATCAATTTTAAGCCTTCACCGAAAAGGAGTGA
7529932 AGCAAATC
1 AGCAAATC
7529940 CATCCATAAA
Statistics
Matches: 71, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
36 31 0.44
37 34 0.48
38 6 0.08
ACGTcount: A:0.39, C:0.20, G:0.19, T:0.21
Consensus pattern (37 bp):
AGCAAATCAATTTTAAGCCTTCACCGAAAAGGAGTGA
Found at i:7530316 original size:219 final size:216
Alignment explanation
Indices: 7529939--7531010 Score: 1673
Period size: 219 Copynumber: 5.0 Consensus size: 216
7529929 TGAAGCAAAT
* *
7529939 CCATCCATAAAACCTTCGGGCAGGATGTTTTCACATGAATTTGAAAATGAAAAAATA-GTGTTTT
1 CCATCCATAAAACCTTCGGGTAGGATGTTTTCACATGAATTTGAAAATGAAAAAAAATGTGTTTT
* * * *
7530003 AAGAAGATGGAATTTTTGAAAACAAAGAATGCGATTTTCAAACTTTCACAATTTATAAGTCCTTC
66 AAGAAGATGAAATTTTTGAAAACGAAGAATGCGATTTTCAAAATTTCACGATTTATAAGTCCTTC
* *
7530068 GGGCCATCAGTAAGTCTTTTGATCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTAGAG
131 GGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTAGAG
*
7530133 CAAGATGATAAGCCCTTCGGG
196 CAAGATGATAAGTCCTTCGGG
7530154 CCATCCATAAAACCTTCGGGTAGGATGTTTTCACATGAATTTGAAAAATGAAAAAAAAATGATGT
1 CCATCCATAAAACCTTCGGGTAGGATGTTTTCACATGAATTTG-AAAATG-AAAAAAAATG-TGT
*
7530219 TTTAAGAAGATGAAATTTTTGAAAACGAAGAATGCGATTTTCAAAATTTCACAATTTATAAGTCC
63 TTTAAGAAGATGAAATTTTTGAAAACGAAGAATGCGATTTTCAAAATTTCACGATTTATAAGTCC
* *
7530284 TTTGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATTTGTAAGCCTTTA
128 TTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTA
*
7530349 GAGCATGATGATAAGTCCTTCGGG
193 GAGCAAGATGATAAGTCCTTCGGG
7530373 CCATCCATAAAACCTTCGGGTAGGATGTTTTCACATGAATTTGAAAATG-AAAAAAATAGTGTTT
1 CCATCCATAAAACCTTCGGGTAGGATGTTTTCACATGAATTTGAAAATGAAAAAAAAT-GTGTTT
* *
7530437 TAAGAAGATGGAATTTTTGAAAACAAAGAATGCGATTTTCAAAATTTCACGATTTATAA------
65 TAAGAAGATGAAATTTTTGAAAACGAAGAATGCGATTTTCAAAATTTCACGATTTATAAGTCCTT
*
7530496 ----CCATCAGTAAGTATTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTAGA
130 CGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTAGA
7530557 GCAAGATGATAAGTCCTTCGGG
195 GCAAGATGATAAGTCCTTCGGG
*
7530579 CCATCTATAAAACCTTCGGGTA-GATGTTTTCACATGAATTTGAAAATG---AAAAATGGTGTTT
1 CCATCCATAAAACCTTCGGGTAGGATGTTTTCACATGAATTTGAAAATGAAAAAAAAT-GTGTTT
* *
7530640 TAAGAAGATGAAATTTTTGTAAACGAAGAATGCAATTTTCAAAATTTCACGATTTATAAGTCCTT
65 TAAGAAGATGAAATTTTTGAAAACGAAGAATGCGATTTTCAAAATTTCACGATTTATAAGTCCTT
* *
7530705 CGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGG-CTATTTGTAAGCTTTTAG
130 CGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTC-ATCTGTAAGCCTTTAG
7530769 AGCAAGATGATAAGTCCTTCGGG
194 AGCAAGATGATAAGTCCTTCGGG
*
7530792 CCATCCATAAAACCTTCGGGTAGGATGTTTTCACATGAATTTGAAAATG---AAAATTGGTGTTT
1 CCATCCATAAAACCTTCGGGTAGGATGTTTTCACATGAATTTGAAAATGAAAAAAAAT-GTGTTT
* *
7530854 TAAGAAGATTG-AATTTTTGAAAACGAAGAATGCAATTTTCAAAATTTCACGATTTATAAGTCAT
65 TAAGAAGA-TGAAATTTTTGAAAACGAAGAATGCGATTTTCAAAATTTCACGATTTATAAGTCCT
* *
7530918 TCAGGCCATCAGTAAATCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTAG
129 TCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTAG
* *
7530983 AGCAAGATGATAAGTCATTCGAG
194 AGCAAGATGATAAGTCCTTCGGG
7531006 CCATC
1 CCATC
7531011 AGTTTGTCTT
Statistics
Matches: 802, Mismatches: 36, Indels: 39
0.91 0.04 0.04
Matches are distributed among these distances:
203 67 0.08
205 26 0.03
206 101 0.13
212 1 0.00
213 99 0.12
214 182 0.23
215 45 0.06
216 75 0.09
217 8 0.01
218 7 0.01
219 191 0.24
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.32
Consensus pattern (216 bp):
CCATCCATAAAACCTTCGGGTAGGATGTTTTCACATGAATTTGAAAATGAAAAAAAATGTGTTTT
AAGAAGATGAAATTTTTGAAAACGAAGAATGCGATTTTCAAAATTTCACGATTTATAAGTCCTTC
GGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTAGAG
CAAGATGATAAGTCCTTCGGG
Found at i:7530761 original size:42 final size:41
Alignment explanation
Indices: 7530695--7530796 Score: 107
Period size: 42 Copynumber: 2.5 Consensus size: 41
7530685 TTCACGATTT
* * *
7530695 ATAAGTCCTTCGGGCCATCAGTAAG-TCTTTCGAGCATGATG
1 ATAAATCCTTCGGGCCATCAGTAAGCT-TTTAGAGCAAGATG
* * **
7530736 CTTAAATCCTTCGGGCTATTTGTAAGCTTTTAGAGCAAGATG
1 -ATAAATCCTTCGGGCCATCAGTAAGCTTTTAGAGCAAGATG
*
7530778 ATAAGTCCTTCGGGCCATC
1 ATAAATCCTTCGGGCCATC
7530797 CATAAAACCT
Statistics
Matches: 48, Mismatches: 11, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
41 15 0.31
42 32 0.67
43 1 0.02
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.31
Consensus pattern (41 bp):
ATAAATCCTTCGGGCCATCAGTAAGCTTTTAGAGCAAGATG
Found at i:7531057 original size:83 final size:83
Alignment explanation
Indices: 7530909--7531062 Score: 220
Period size: 83 Copynumber: 1.9 Consensus size: 83
7530899 TTCACGATTT
* * * *
7530909 ATAAGTCATTCAGGCCATCAGTAAATCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTA
1 ATAAGTCATTCAGGCCATCAGTAAATCTTTCGAGCATGATGATTAAAACCTTCGAGTAATCTGTA
7530974 AGCCTTTAGAGCAAGATG
66 AGCCTTTAGAGCAAGATG
*** *
7530992 ATAAGTCATTC-GAGCCATCAGTTTGTCTTTCGAGCATGATGATTAAAACCTTCGAGTAATTTGT
1 ATAAGTCATTCAG-GCCATCAGTAAATCTTTCGAGCATGATGATTAAAACCTTCGAGTAATCTGT
7531056 AAGCCTT
65 AAGCCTT
7531063 CACTAAAGAG
Statistics
Matches: 62, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
82 1 0.02
83 61 0.98
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.32
Consensus pattern (83 bp):
ATAAGTCATTCAGGCCATCAGTAAATCTTTCGAGCATGATGATTAAAACCTTCGAGTAATCTGTA
AGCCTTTAGAGCAAGATG
Found at i:7531127 original size:419 final size:414
Alignment explanation
Indices: 7529939--7531010 Score: 1340
Period size: 419 Copynumber: 2.5 Consensus size: 414
7529929 TGAAGCAAAT
*
7529939 CCATCCATAAAACCTTCGGGCAGGATGTTTTCACATGAATTTGAAAATGAAAAAATAGTGTTTTA
1 CCATCCATAAAACCTTCGGGTAGGATGTTTTCACATGAATTTGAAAATGAAAAAATAGTGTTTTA
* * *
7530004 AGAAGATGGAATTTTTGAAAACAAAGAATGCGATTTTCAAACTTTCACAATTTATAAGTCCTTCG
66 AGAAGATGGAATTTTTGAAAACAAAGAATGCAATTTTCAAAATTTCACGATTTATAA--------
* * * *
7530069 GGCCATCAGTAAGTCTTTTGATCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTAGAGC
123 --CCATCAGTAAATATTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTAGAGC
* * * * * * * *
7530134 AAGATGATAAGCCCTTCGGGCCATCCATAAAACCTTCGGGTAGGATGTTTTCACATGAATTTGAA
186 AAGATGATAAGTCATTCGAGCCATCTATAAAACCTTCGAGCA-GATGTATTCACA-GAATTCG-A
*** * ** *
7530199 AAATGAAAAAAAAATGATGTTTTAAGAAGATGAAATTTTTGA-AAACGAAGAATGCGATTTTCAA
248 AAATG----AAAAATG-TCACTAAAGAAGATGAAA-AATTCATAAACGAAGAATGC-A-TTTCAA
* * *
7530263 AATTTCACAATTTATAAGTCCTTTGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTT
305 AATATCACGATTTATAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTT
*
7530328 CGGGTCATTTGTAAGCCTTTAGAGCATGATGATAAGTCCTTCGGG
370 CGGGTCATTTGTAAGCCTTTAGAGCAAGATGATAAGTCCTTCGGG
7530373 CCATCCATAAAACCTTCGGGTAGGATGTTTTCACATGAATTTGAAAATGAAAAAAATAGTGTTTT
1 CCATCCATAAAACCTTCGGGTAGGATGTTTTCACATGAATTTGAAAATG-AAAAAATAGTGTTTT
*
7530438 AAGAAGATGGAATTTTTGAAAACAAAGAATGCGATTTTCAAAATTTCACGATTTATAACCATCAG
65 AAGAAGATGGAATTTTTGAAAACAAAGAATGCAATTTTCAAAATTTCACGATTTATAACCATCAG
*
7530503 TAAGTATTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTAGAGCAAGATGATA
130 TAAATATTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTAGAGCAAGATGATA
* * * * * *
7530568 AGTCCTTCGGGCCATCTATAAAACCTTCGGGTAGATGTTTTCACATGAATTTGAAAATGAAAAAT
195 AGTCATTCGAGCCATCTATAAAACCTTCGAGCAGATGTATTCACA-GAATTCGAAAATGAAAAAT
*** * ** ** *
7530633 GGTGTTTTAAGAAGATGAAATTTTTGTAAACGAAGAATGCAATTTTCAAAATTTCACGATTTATA
259 -GTCACTAAAGAAGATGAAAAATTCATAAACGAAGAATGC-A-TTTCAAAATATCACGATTTATA
7530698 AGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGG-CTATTTGTAAG
321 AGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTC-ATTTGTAAG
*
7530762 CTTTTAGAGCAAGATGATAAGTCCTTCGGG
385 CCTTTAGAGCAAGATGATAAGTCCTTCGGG
* *
7530792 CCATCCATAAAACCTTCGGGTAGGATGTTTTCACATGAATTTGAAAATG-AAAATTGGTGTTTTA
1 CCATCCATAAAACCTTCGGGTAGGATGTTTTCACATGAATTTGAAAATGAAAAAATAGTGTTTTA
* *
7530856 AGAAGATTGAATTTTTGAAAACGAAGAATGCAATTTTCAAAATTTCACGATTTATAAGTCATTCA
66 AGAAGATGGAATTTTTGAAAACAAAGAATGCAATTTTCAAAATTTCACGA-TT-T-A-T-A---A
*
7530921 GGCCATCAGTAAATCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTAGAGC
123 --CCATCAGTAAATATTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTAGAGC
7530986 AAGATGATAAGTCATTCGAGCCATC
186 AAGATGATAAGTCATTCGAGCCATC
7531011 AGTTTGTCTT
Statistics
Matches: 600, Mismatches: 24, Indels: 35
0.91 0.04 0.05
Matches are distributed among these distances:
417 60 0.10
418 7 0.01
419 199 0.33
420 2 0.00
421 1 0.00
422 1 0.00
423 6 0.01
424 20 0.03
425 101 0.17
427 84 0.14
434 48 0.08
435 71 0.12
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.32
Consensus pattern (414 bp):
CCATCCATAAAACCTTCGGGTAGGATGTTTTCACATGAATTTGAAAATGAAAAAATAGTGTTTTA
AGAAGATGGAATTTTTGAAAACAAAGAATGCAATTTTCAAAATTTCACGATTTATAACCATCAGT
AAATATTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTAGAGCAAGATGATAA
GTCATTCGAGCCATCTATAAAACCTTCGAGCAGATGTATTCACAGAATTCGAAAATGAAAAATGT
CACTAAAGAAGATGAAAAATTCATAAACGAAGAATGCATTTCAAAATATCACGATTTATAAGTCC
TTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATTTGTAAGCCTTTA
GAGCAAGATGATAAGTCCTTCGGG
Found at i:7532463 original size:16 final size:15
Alignment explanation
Indices: 7532433--7532466 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
7532423 CTATTATGTT
*
7532433 TTTCTTTCTATTTTC
1 TTTCTTTCCATTTTC
7532448 TTTCTTTACCATTTTC
1 TTTCTTT-CCATTTTC
7532464 TTT
1 TTT
7532467 GTGTGTGTGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.09, C:0.21, G:0.00, T:0.71
Consensus pattern (15 bp):
TTTCTTTCCATTTTC
Found at i:7536581 original size:19 final size:19
Alignment explanation
Indices: 7536550--7536587 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
7536540 ATATAAAATG
*
7536550 ACTAAATTATTTATTTATA
1 ACTAAATTATTTAATTATA
7536569 ACTATAATT-TTTAATTATA
1 ACTA-AATTATTTAATTATA
7536588 TATTTTCCGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (19 bp):
ACTAAATTATTTAATTATA
Found at i:7537186 original size:19 final size:19
Alignment explanation
Indices: 7537148--7537186 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
7537138 AAAATATTTT
*
7537148 ATTTTATTAATATTTATAA
1 ATTTTATTAATAATTATAA
7537167 ATTTTATTAATTAATT-TAA
1 ATTTTATTAA-TAATTATAA
7537186 A
1 A
7537187 ATAAAATATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (19 bp):
ATTTTATTAATAATTATAA
Found at i:7537589 original size:20 final size:20
Alignment explanation
Indices: 7537560--7537655 Score: 165
Period size: 20 Copynumber: 4.8 Consensus size: 20
7537550 TGATTAATGA
*
7537560 AATGTAAGATTATCAGTGGG
1 AATGTAAGATTACCAGTGGG
*
7537580 AATATAAGATTACCAGTGGG
1 AATGTAAGATTACCAGTGGG
7537600 AATGTAAGATTACCAGTGGG
1 AATGTAAGATTACCAGTGGG
*
7537620 AATGTAAGATTACCAGTGAG
1 AATGTAAGATTACCAGTGGG
7537640 AATGTAAGATTACCAG
1 AATGTAAGATTACCAG
7537656 GGAATAGGAT
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 72 1.00
ACGTcount: A:0.39, C:0.09, G:0.26, T:0.26
Consensus pattern (20 bp):
AATGTAAGATTACCAGTGGG
Found at i:7540852 original size:5 final size:5
Alignment explanation
Indices: 7540842--7541235 Score: 713
Period size: 5 Copynumber: 78.4 Consensus size: 5
7540832 TGTCTGTAAA
*
7540842 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAA
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
7540892 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
7540942 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
7540992 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
7541042 ATAAT ATAAT ATAAT AT-AT ATAAT ATAATAT ATAAT ATAAT ATAAT AT-AT
1 ATAAT ATAAT ATAAT ATAAT ATAAT AT-A-AT ATAAT ATAAT ATAAT ATAAT
7541092 ATAAT ATAAT ATAAT AT-AT ATAAT ATAAT ATAAT ATAAT ATAAT ATATAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATA-AT
7541142 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAATAT ATAAT ATAAT ATAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT AT-A-AT ATAAT ATAAT ATAAT
7541194 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT AT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT AT
7541236 TTTTGCCCGG
Statistics
Matches: 379, Mismatches: 2, Indels: 16
0.95 0.01 0.04
Matches are distributed among these distances:
4 12 0.03
5 350 0.92
6 9 0.02
7 8 0.02
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATAAT
Found at i:7541909 original size:84 final size:83
Alignment explanation
Indices: 7541703--7542649 Score: 1197
Period size: 84 Copynumber: 11.5 Consensus size: 83
7541693 GAATTTGACA
* * ** * *
7541703 TGCCCTTGAGCTGAATGTAATCGAACTCGAAGGTCTTTTTTTAACAGATAACCCTTCTCGCCTTA
1 TGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTC-TTTTTTGGCAGATAACCCTTCTTGCCTTG
* *
7541768 AGCTATGATGTAAATTTGATG
65 AGCTATGCTGCAAA--TGATG
* * *
7541789 TGCCTTTGAGATGAGTGTAATCGAACTCGAAGGTCTTTTGTTGGCAGATAGCCCTTCTTACCTTG
1 TGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTT-TTGGCAGATAACCCTTCTTGCCTTG
* *
7541854 AACTATACTGCAAATGATG
65 AGCTATGCTGCAAATGATG
* * *
7541873 TGCCTTGGAGCTGAGTGTAATCGAACTCGAAGGTCTTTTATTGGCATATAACCCTTATTGCCTTG
1 TGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTT-TTGGCAGATAACCCTTCTTGCCTTG
* *
7541938 AGTTATGTTGCAAATGATG
65 AGCTATGCTGCAAATGATG
* *
7541957 TGCC-TTGAGCTGAGTATAATCGAACTCGAAGGTCTTTTATTGACAGATAACCCTTCTTGCCTTG
1 TGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTT-TTGGCAGATAACCCTTCTTGCCTTG
* *
7542021 AACTATGCTGCAAATGAAG
65 AGCTATGCTGCAAATGATG
* *
7542040 TGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTC---TTTAGCAGATAACCCTTCTTGTCTTGA
1 TGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTTTTGGCAGATAACCCTTCTTGCCTTGA
*
7542102 GCTATACTGC-AATGATG
66 GCTATGCTGCAAATGATG
* * * * *
7542119 TACCTTTGAGCTGAGTGTAATTGAACTCAAAGGTC---TTTGGTAGATAGCCCTTCTTGCCTTGA
1 TGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTTTTGGCAGATAACCCTTCTTGCCTTGA
*
7542181 GCTATGCTACAAATGATG
66 GCTATGCTGCAAATGATG
* * *
7542199 CGCCTTTGAGCTGACTGTAATCGAACTCGAAGGTC---TTTGGCAGATAGCCCTTCTTGCCTTGA
1 TGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTTTTGGCAGATAACCCTTCTTGCCTTGA
*
7542261 GCTATACTGCAAATGATG
66 GCTATGCTGCAAATGATG
*
7542279 TGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTC---TTTGGCAGATAGCCCTTCTTGCCTTGA
1 TGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTTTTGGCAGATAACCCTTCTTGCCTTGA
*
7542341 ACTATGCTGCAAATGATG
66 GCTATGCTGCAAATGATG
* * * *
7542359 TGCCTTTGAGCTGAGTGCAAACGAACTCGAAAGTCTTTTATTGACAGATAACCC-TCATTGCCTT
1 TGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTT-TTGGCAGATAACCCTTC-TTGCCTT
*
7542423 GAGCTATGCTGAAAATGA-G
64 GAGCTATGCTGCAAATGATG
* *
7542442 TGCCTTTGAGCTGAGTGTAATCGAATCTTGAAGGTCTTTTGTTGGCAGATATCCCTTCTTGCCTT
1 TGCCTTTGAGCTGAGTGTAATCGAA-CTCGAAGGTCTTTT-TTGGCAGATAACCCTTCTTGCCTT
7542507 GAGCTATGCTGCAAATGATG
64 GAGCTATGCTGCAAATGATG
* * * * *
7542527 TGCCTTTGAGTTAAGTGTAATTGAACTCGAAGGTCTTTTGTTGGAAGATAGCCCTTCTTGCCTTG
1 TGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTT-TTGGCAGATAACCCTTCTTGCCTTG
** *
7542592 AGCTATTATGTAAATGATG
65 AGCTATGCTGCAAATGATG
* *
7542611 TGCCTTTGAGCTGAGTGTAATTGAACTCAAAGGTCTTTT
1 TGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTT
7542650 GTTGAAGGTG
Statistics
Matches: 762, Mismatches: 88, Indels: 24
0.87 0.10 0.03
Matches are distributed among these distances:
79 69 0.09
80 218 0.29
81 1 0.00
83 101 0.13
84 283 0.37
85 29 0.04
86 61 0.08
ACGTcount: A:0.24, C:0.19, G:0.23, T:0.34
Consensus pattern (83 bp):
TGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTTTTGGCAGATAACCCTTCTTGCCTTGA
GCTATGCTGCAAATGATG
Found at i:7543640 original size:95 final size:95
Alignment explanation
Indices: 7543461--7543705 Score: 348
Period size: 95 Copynumber: 2.5 Consensus size: 95
7543451 AGTCAGAGAA
* * *
7543461 TTTAACCAATTGCTCTAGAGGGACAACTCAATGTCATTGTA-TATATATTATAATCATCTTTATC
1 TTTAACCAATTGCTCTAGAAGGACAACTCAA-G-C-TT-TATTGTATATTATAATCACCTTTATC
*
7543525 AGGCTAGTTGAATATTATCCATAAAGCCGGGGCG
62 AGGCTAGCTGAATATTATCCATAAAGCCGGGGCG
* * *
7543559 TTTAACCAATTGCCCTAGAAGAACAACTCAAGCTTTATTGTATATTATAATTACCTTTATCAGGC
1 TTTAACCAATTGCTCTAGAAGGACAACTCAAGCTTTATTGTATATTATAATCACCTTTATCAGGC
* *
7543624 TAGCTGAATCTTATCCATAAAGCTGGGGCG
66 TAGCTGAATATTATCCATAAAGCCGGGGCG
*
7543654 TTTAACCAATTGCTCTAGATGGACAACTCAAGCTTTATTGTATATATATAAT
1 TTTAACCAATTGCTCTAGAAGGACAACTCAAGCTTTATTGTATAT-TATAAT
7543706 ATTATAATCT
Statistics
Matches: 133, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
94 2 0.02
95 95 0.71
96 7 0.05
97 1 0.01
98 28 0.21
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
Consensus pattern (95 bp):
TTTAACCAATTGCTCTAGAAGGACAACTCAAGCTTTATTGTATATTATAATCACCTTTATCAGGC
TAGCTGAATATTATCCATAAAGCCGGGGCG
Found at i:7564953 original size:23 final size:22
Alignment explanation
Indices: 7564927--7565001 Score: 71
Period size: 23 Copynumber: 3.2 Consensus size: 22
7564917 TTATTGTATG
7564927 CGAACGTATTCATTTAATGTTCA
1 CGAACGT-TTCATTTAATGTTCA
* *
7564950 CGAACGTGTTCGTTTATTTGTTCA
1 CGAACGT-TTCATTTA-ATGTTCA
*
7564974 CGGACACG-TTCATTTAATATTCA
1 C-GA-ACGTTTCATTTAATGTTCA
7564997 CGAAC
1 CGAAC
7565002 ATGTTCGTTT
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
21 2 0.05
22 2 0.05
23 20 0.47
24 14 0.33
25 2 0.05
26 3 0.07
ACGTcount: A:0.27, C:0.20, G:0.16, T:0.37
Consensus pattern (22 bp):
CGAACGTTTCATTTAATGTTCA
Found at i:7565007 original size:23 final size:23
Alignment explanation
Indices: 7564935--7565018 Score: 87
Period size: 23 Copynumber: 3.6 Consensus size: 23
7564925 TGCGAACGTA
*
7564935 TTCATTTAATGTTCACGAACGTG
1 TTCATTTAATGTTCACGAACATG
* * * *
7564958 TTCGTTTATTTGTTCACGGACACG
1 TTCATTTA-ATGTTCACGAACATG
*
7564982 TTCATTTAATATTCACGAACATG
1 TTCATTTAATGTTCACGAACATG
* *
7565005 TTCGTTTAACGTTC
1 TTCATTTAATGTTC
7565019 GTTTATACGT
Statistics
Matches: 47, Mismatches: 13, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
23 29 0.62
24 18 0.38
ACGTcount: A:0.24, C:0.19, G:0.15, T:0.42
Consensus pattern (23 bp):
TTCATTTAATGTTCACGAACATG
Found at i:7566254 original size:3 final size:3
Alignment explanation
Indices: 7566239--7566370 Score: 68
Period size: 3 Copynumber: 44.0 Consensus size: 3
7566229 ACATGAATAG
* * * * * *
7566239 CAA CAA CAG CAA CAA CAA CAA TAA CAGA -AA CAA TAA CAG TAA CAG
1 CAA CAA CAA CAA CAA CAA CAA CAA CA-A CAA CAA CAA CAA CAA CAA
* * * * ** * * * *
7566284 TAA CAA CAA CAA GAG CAA CAC CAA CAA CGG TAA CAA CAA CAC CAC CAG
1 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA
* * * *
7566332 CAA CAA TAA CAA TAA TAA CAA CAA CAG CAA CAA CAA CAA
1 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA
7566371 TAATAATATT
Statistics
Matches: 92, Mismatches: 35, Indels: 4
0.70 0.27 0.03
Matches are distributed among these distances:
2 1 0.01
3 90 0.98
4 1 0.01
ACGTcount: A:0.58, C:0.28, G:0.08, T:0.06
Consensus pattern (3 bp):
CAA
Found at i:7566374 original size:27 final size:27
Alignment explanation
Indices: 7566221--7566376 Score: 97
Period size: 27 Copynumber: 5.7 Consensus size: 27
7566211 TTGTTAAGTA
* *
7566221 CAACAGCAAC-ATGAATAGCAACAACAG
1 CAACAACAACAAT-AATAACAACAACAG
*
7566248 CAACAACAAC---AATAACAGA-AACAA
1 CAACAACAACAATAATAACA-ACAACAG
* ** * * *
7566272 TAACAGTAACAGTAACAACAACAAGAG
1 CAACAACAACAATAATAACAACAACAG
* *
7566299 CAACACCAACAACGGTAACAACAACACCACCAG
1 CAACAACAACAA---TAATAACAACA--A-CAG
*
7566332 CAACAATAACAATAATAACAACAACAG
1 CAACAACAACAATAATAACAACAACAG
7566359 CAACAACAACAATAATAA
1 CAACAACAACAATAATAA
7566377 TATTAAATAT
Statistics
Matches: 100, Mismatches: 18, Indels: 22
0.71 0.13 0.16
Matches are distributed among these distances:
24 17 0.17
25 1 0.01
26 1 0.01
27 46 0.46
28 1 0.01
30 21 0.21
32 1 0.01
33 12 0.12
ACGTcount: A:0.58, C:0.26, G:0.08, T:0.08
Consensus pattern (27 bp):
CAACAACAACAATAATAACAACAACAG
Found at i:7566776 original size:6 final size:7
Alignment explanation
Indices: 7566760--7566784 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
7566750 TTGGCTTTAC
7566760 AAAAATA
1 AAAAATA
7566767 AAAAATA
1 AAAAATA
7566774 AAAAATA
1 AAAAATA
7566781 AAAA
1 AAAA
7566785 CAAAATAGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAATA
Found at i:7575577 original size:21 final size:21
Alignment explanation
Indices: 7575552--7575634 Score: 96
Period size: 21 Copynumber: 4.0 Consensus size: 21
7575542 ATCAGATTGT
* *
7575552 CCAGGGGGTACAGATCCCCCC
1 CCAGGGGGAACAGATTCCCCC
* *
7575573 CCAGGGGGAACATATTCCCCT
1 CCAGGGGGAACAGATTCCCCC
*
7575594 CCAGGGGGAACATATT-CCCC
1 CCAGGGGGAACAGATTCCCCC
* *
7575614 CCAGGGGGTACCGATTCCCCC
1 CCAGGGGGAACAGATTCCCCC
7575635 ATGTCTAACG
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
20 16 0.30
21 37 0.70
ACGTcount: A:0.20, C:0.39, G:0.27, T:0.14
Consensus pattern (21 bp):
CCAGGGGGAACAGATTCCCCC
Found at i:7575592 original size:20 final size:20
Alignment explanation
Indices: 7575569--7575621 Score: 97
Period size: 21 Copynumber: 2.6 Consensus size: 20
7575559 GTACAGATCC
7575569 CCCCCCAGGGGGAACATATT
1 CCCCCCAGGGGGAACATATT
7575589 CCCCTCCAGGGGGAACATATT
1 CCCC-CCAGGGGGAACATATT
7575610 CCCCCCAGGGGG
1 CCCCCCAGGGGG
7575622 TACCGATTCC
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
20 12 0.38
21 20 0.62
ACGTcount: A:0.21, C:0.38, G:0.28, T:0.13
Consensus pattern (20 bp):
CCCCCCAGGGGGAACATATT
Found at i:7577833 original size:23 final size:23
Alignment explanation
Indices: 7577779--7577839 Score: 68
Period size: 23 Copynumber: 2.7 Consensus size: 23
7577769 CAGCTCGTAT
* *
7577779 AAATGCACCTAAGTGCCACATAG
1 AAATACACCGAAGTGCCACATAG
* * * *
7577802 AATTGCACCGTAGTGCCACGTAG
1 AAATACACCGAAGTGCCACATAG
7577825 AAATACACCGAAGTG
1 AAATACACCGAAGTG
7577840 ACATATAAAG
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.36, C:0.25, G:0.21, T:0.18
Consensus pattern (23 bp):
AAATACACCGAAGTGCCACATAG
Found at i:7582637 original size:23 final size:23
Alignment explanation
Indices: 7582608--7582663 Score: 76
Period size: 23 Copynumber: 2.4 Consensus size: 23
7582598 ATAAATGCAT
* *
7582608 CGAAGTGCCACGTAGAATTGCAC
1 CGAAGTGCCACGTAGAAATGAAC
* *
7582631 CGTAGTGCCGCGTAGAAATGAAC
1 CGAAGTGCCACGTAGAAATGAAC
7582654 CGAAGTGCCA
1 CGAAGTGCCA
7582664 TATAAGGTTG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.29, T:0.16
Consensus pattern (23 bp):
CGAAGTGCCACGTAGAAATGAAC
Found at i:7583166 original size:2 final size:2
Alignment explanation
Indices: 7583161--7583204 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
7583151 TACCTTATTC
7583161 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7583203 AT
1 AT
7583205 CCGAAAATAC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7587048 original size:20 final size:20
Alignment explanation
Indices: 7587003--7587047 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
7586993 TCAGATTGTT
7587003 CAGGGGTACAGATTCCCCCC
1 CAGGGGTACAGATTCCCCCC
7587023 CAGGGGTACAGATT-CCCCC
1 CAGGGGTACAGATTCCCCCC
7587042 CAGGGG
1 CAGGGG
7587048 GAATGTACCG
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 11 0.44
20 14 0.56
ACGTcount: A:0.20, C:0.36, G:0.31, T:0.13
Consensus pattern (20 bp):
CAGGGGTACAGATTCCCCCC
Found at i:7588196 original size:37 final size:32
Alignment explanation
Indices: 7588115--7588196 Score: 76
Period size: 37 Copynumber: 2.4 Consensus size: 32
7588105 TTTTTGGTTA
7588115 ACTTGACCCGACCCAAAAATTATACATCCTCC
1 ACTTGACCCGACCCAAAAATTATACATCCTCC
** *
7588147 ACTCAACTCGACCCAACCCGAAATATATACA-CCTTCC
1 ACTTGACCCGACCCAA----AAAT-TATACATCC-TCC
7588184 ACTTGACCCGACC
1 ACTTGACCCGACC
7588197 TTTTGAGATA
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
32 13 0.34
36 6 0.16
37 19 0.50
ACGTcount: A:0.33, C:0.40, G:0.07, T:0.20
Consensus pattern (32 bp):
ACTTGACCCGACCCAAAAATTATACATCCTCC
Found at i:7588742 original size:29 final size:30
Alignment explanation
Indices: 7588709--7588772 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 30
7588699 ATGAAGAATG
*
7588709 TTATTGAGA-ATATTAAAAAT-ATTAAATTC
1 TTATTGA-ACATATTAAAAATAAATAAATTC
* *
7588738 TTATTGAACATATTTAAAATAAATAAATTT
1 TTATTGAACATATTAAAAATAAATAAATTC
7588768 TTATT
1 TTATT
7588773 TGCTTTCTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
28 1 0.03
29 17 0.57
30 12 0.40
ACGTcount: A:0.47, C:0.03, G:0.05, T:0.45
Consensus pattern (30 bp):
TTATTGAACATATTAAAAATAAATAAATTC
Found at i:7593798 original size:35 final size:34
Alignment explanation
Indices: 7593708--7593883 Score: 112
Period size: 37 Copynumber: 5.0 Consensus size: 34
7593698 TTGCAAATTG
* *
7593708 TTTTTGAAAATACATATATAATATATAG-TTTAAAACA
1 TTTTTGAAAAT---TATATATTATATAGTTTTTAAA-A
*
7593745 TTTTTGAAAATATGTATATTATATAGTTTTTAAATA
1 TTTTTGAAAAT-TATATATTATATAGTTTTTAAA-A
7593781 TTTTTGAAAA-T-TATA-TATATAGTTTTTGAAAA
1 TTTTTGAAAATTATATATTATATAGTTTTT-AAAA
* * *
7593813 CGTTTTT-AAAA-TATATATAATATACTTTTGAAAA
1 --TTTTTGAAAATTATATATTATATAGTTTTTAAAA
* * * *
7593847 CGTTATGAAAACATTATATAATATATAATTTTTAAAA
1 -TTTTTG-AAA-ATTATATATTATATAGTTTTTAAAA
7593884 ACCATGTTGA
Statistics
Matches: 115, Mismatches: 14, Indels: 20
0.77 0.09 0.13
Matches are distributed among these distances:
32 13 0.11
33 15 0.13
34 14 0.12
35 25 0.22
36 18 0.16
37 30 0.26
ACGTcount: A:0.44, C:0.03, G:0.07, T:0.45
Consensus pattern (34 bp):
TTTTTGAAAATTATATATTATATAGTTTTTAAAA
Found at i:7593830 original size:34 final size:34
Alignment explanation
Indices: 7593721--7593901 Score: 133
Period size: 35 Copynumber: 5.2 Consensus size: 34
7593711 TTGAAAATAC
*
7593721 ATATATAATATATAG--TTTAAAACATTTTTGAAA
1 ATATAT-ATATATAGTTTTTAAAACGTTTTTGAAA
7593754 ATATGTATATTATATAGTTTTTAAATA--TTTTTGAAA
1 ATA--TATA-TATATAGTTTTTAAA-ACGTTTTTGAAA
7593790 AT-TATATATATAGTTTTTGAAAACGTTTTT-AAA
1 ATATATATATATAGTTTTT-AAAACGTTTTTGAAA
* * *
7593823 ATATATATAATATACTTTTGAAAACG-TTATGAAAA
1 ATATATAT-ATATAGTTTTTAAAACGTTTTTG-AAA
* ** *
7593858 CATTATATAATATATAATTTTTAAAAACCATGTTGAAA
1 -A-TATAT-ATATATAGTTTTT-AAAACGTTTTTGAAA
7593896 ATATAT
1 ATATAT
7593902 TTTTTGAAAA
Statistics
Matches: 122, Mismatches: 8, Indels: 33
0.75 0.05 0.20
Matches are distributed among these distances:
32 13 0.11
33 18 0.15
34 17 0.14
35 22 0.18
36 17 0.14
37 21 0.17
38 11 0.09
39 3 0.02
ACGTcount: A:0.45, C:0.04, G:0.07, T:0.44
Consensus pattern (34 bp):
ATATATATATATAGTTTTTAAAACGTTTTTGAAA
Found at i:7593885 original size:27 final size:27
Alignment explanation
Indices: 7593854--7593952 Score: 73
Period size: 27 Copynumber: 3.7 Consensus size: 27
7593844 AAACGTTATG
7593854 AAAACATTATATAATATATAATTTTTA
1 AAAACATTATATAATATATAATTTTTA
*
7593881 AAAACCATGT-TGA-AA-ATAT-ATTTTTT
1 AAAA-CAT-TAT-ATAATATATAATTTTTA
* * *
7593907 GAAA-ATTATATAATATATAGTTTTTG
1 AAAACATTATATAATATATAATTTTTA
* * *
7593933 AAAACGTTTTAAAATATATA
1 AAAACATTATATAATATATA
7593953 TAATATATAC
Statistics
Matches: 56, Mismatches: 8, Indels: 16
0.70 0.10 0.20
Matches are distributed among these distances:
23 2 0.04
24 5 0.09
25 4 0.07
26 17 0.30
27 20 0.36
28 6 0.11
29 2 0.04
ACGTcount: A:0.47, C:0.04, G:0.06, T:0.42
Consensus pattern (27 bp):
AAAACATTATATAATATATAATTTTTA
Found at i:7593924 original size:25 final size:25
Alignment explanation
Indices: 7593859--7593936 Score: 75
Period size: 25 Copynumber: 3.0 Consensus size: 25
7593849 TTATGAAAAC
*
7593859 ATTATATAATATATAATTTTTAAAA
1 ATTATATAATATATAATTTTTGAAA
** * * *
7593884 ACCATGTTGAAAATATATTTTTTGAAA
1 ATTAT-AT-AATATATAATTTTTGAAA
*
7593911 ATTATATAATATATAGTTTTTGAAA
1 ATTATATAATATATAATTTTTGAAA
7593936 A
1 A
7593937 CGTTTTAAAA
Statistics
Matches: 40, Mismatches: 11, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
25 20 0.50
26 2 0.05
27 18 0.45
ACGTcount: A:0.46, C:0.03, G:0.06, T:0.45
Consensus pattern (25 bp):
ATTATATAATATATAATTTTTGAAA
Found at i:7593973 original size:125 final size:122
Alignment explanation
Indices: 7593781--7594027 Score: 426
Period size: 126 Copynumber: 2.0 Consensus size: 122
7593771 TTTTTAAATA
7593781 TTTTTGAAAATTATATATATAGTTTTTGAAAACGTTTTTAAAATATATATAATATACTTTTGAAA
1 TTTTTGAAAATTATATATATAGTTTTTGAAAACGTTTTTAAAATATATATAATATACTTTTGAAA
7593846 ACGTTATGAAAACA-TTATATAATATATAATTTTTAAAAACCATGTTGAAAATATAT
66 ACGTTATGAAAACATTTATATAATATATAATTTTTAAAAACCATGTTGAAAATATAT
7593902 TTTTTGAAAATTATATAATATATAGTTTTTGAAAACG-TTTTAAAATATATATAATATATACTTT
1 TTTTTGAAAA-T-TAT-ATATATAGTTTTTGAAAACGTTTTTAAAATATATAT-A-ATATACTTT
*
7593966 TGAAAACGTTATGAAAACATTTATATAATATATAATTTTTAAAAACCATTTTGAAAATATAT
61 TGAAAACGTTATGAAAACATTTATATAATATATAATTTTTAAAAACCATGTTGAAAATATAT
7594028 ATAATATATA
Statistics
Matches: 119, Mismatches: 1, Indels: 7
0.94 0.01 0.06
Matches are distributed among these distances:
121 10 0.08
122 1 0.01
123 18 0.15
124 21 0.18
125 28 0.24
126 41 0.34
ACGTcount: A:0.45, C:0.05, G:0.07, T:0.43
Consensus pattern (122 bp):
TTTTTGAAAATTATATATATAGTTTTTGAAAACGTTTTTAAAATATATATAATATACTTTTGAAA
ACGTTATGAAAACATTTATATAATATATAATTTTTAAAAACCATGTTGAAAATATAT
Found at i:7594043 original size:38 final size:37
Alignment explanation
Indices: 7593903--7594043 Score: 180
Period size: 38 Copynumber: 3.8 Consensus size: 37
7593893 AAAATATATT
7593903 TTTTGAAAAT-TATATAATATATAGTTTTTGAAAACG
1 TTTTGAAAATATATATAATATATAGTTTTTGAAAACG
*
7593939 TTTT-AAAATATATATAATATATA-CTTTTGAAAACG
1 TTTTGAAAATATATATAATATATAGTTTTTGAAAACG
* * * * *
7593974 TTATGAAAACATTTATATAATATATAATTTTTAAAAACCA
1 TTTTG-AAA-ATATATATAATATATAGTTTTTGAAAA-CG
7594014 TTTTGAAAATATATATAATATATAGTTTTT
1 TTTTGAAAATATATATAATATATAGTTTTT
7594044 TTAAAAAAAA
Statistics
Matches: 90, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
35 19 0.21
36 17 0.19
37 3 0.03
38 35 0.39
39 11 0.12
40 5 0.06
ACGTcount: A:0.45, C:0.04, G:0.06, T:0.45
Consensus pattern (37 bp):
TTTTGAAAATATATATAATATATAGTTTTTGAAAACG
Found at i:7594091 original size:36 final size:36
Alignment explanation
Indices: 7593903--7594091 Score: 148
Period size: 38 Copynumber: 5.0 Consensus size: 36
7593893 AAAATATATT
* *
7593903 TTTTGAAAA-TTATATAATATATAGTTTTTGAAAACG
1 TTTTAAAAATTTATATAATATATA-TTTTTGAAAACA
* * *
7593939 TTTT-AAAATATATATAATATATACTTTTGAAAACG
1 TTTTAAAAATTTATATAATATATATTTTTGAAAACA
* *
7593974 TTATGAAAACATTTATATAATATATAATTTTTAAAAACCA
1 TT-TTAAAA-ATTTATATAATATAT-ATTTTTGAAAA-CA
* * *
7594014 TTTTGAAAATATATATAATATATAGTTTTTTTAAAAAAAAACA
1 TTTTAAAAATTTATATAATATATA---TTTTT----GAAAACA
* *
7594057 TTTTAAAAATTTATATATTATATGTTTTTGAAAAC
1 TTTTAAAAATTTATATAATATATATTTTTGAAAAC
7594092 GTTTATATAT
Statistics
Matches: 125, Mismatches: 15, Indels: 26
0.75 0.09 0.16
Matches are distributed among these distances:
35 17 0.14
36 23 0.18
37 4 0.03
38 28 0.22
39 13 0.10
40 13 0.10
43 22 0.18
44 5 0.04
ACGTcount: A:0.46, C:0.04, G:0.06, T:0.44
Consensus pattern (36 bp):
TTTTAAAAATTTATATAATATATATTTTTGAAAACA
Found at i:7594142 original size:15 final size:15
Alignment explanation
Indices: 7594122--7594154 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
7594112 ATTATTTATT
7594122 TTTATTTTTAATTTA
1 TTTATTTTTAATTTA
*
7594137 TTTATTTTTCATTTA
1 TTTATTTTTAATTTA
7594152 TTT
1 TTT
7594155 TTGTGCAGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (15 bp):
TTTATTTTTAATTTA
Found at i:7594150 original size:11 final size:10
Alignment explanation
Indices: 7594107--7594156 Score: 57
Period size: 11 Copynumber: 4.8 Consensus size: 10
7594097 TATATATATA
*
7594107 TTATTATTAT
1 TTATTTTTAT
7594117 TTATTTTTAT
1 TTATTTTTAT
7594127 TT-TTAATTTAT
1 TTATT--TTTAT
7594138 TTATTTTTCAT
1 TTATTTTT-AT
7594149 TTATTTTT
1 TTATTTTT
7594157 GTGCAGGGTC
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
9 2 0.06
10 14 0.40
11 17 0.49
12 2 0.06
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (10 bp):
TTATTTTTAT
Found at i:7595408 original size:13 final size:14
Alignment explanation
Indices: 7595392--7595421 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
7595382 TTTTATCTAT
7595392 TTTTATTATT-TTA
1 TTTTATTATTGTTA
7595405 TTTTATTATTGTTA
1 TTTTATTATTGTTA
7595419 TTT
1 TTT
7595422 CTTTCCCATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.62
14 6 0.38
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.77
Consensus pattern (14 bp):
TTTTATTATTGTTA
Found at i:7596675 original size:17 final size:17
Alignment explanation
Indices: 7596655--7596687 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
7596645 CTCACTAACC
7596655 CTTTTACTTTTTGTTCT
1 CTTTTACTTTTTGTTCT
*
7596672 CTTTTATTTTTTGTTC
1 CTTTTACTTTTTGTTC
7596688 ATCGTTTGCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.06, C:0.15, G:0.06, T:0.73
Consensus pattern (17 bp):
CTTTTACTTTTTGTTCT
Found at i:7600768 original size:164 final size:164
Alignment explanation
Indices: 7600526--7601224 Score: 1001
Period size: 164 Copynumber: 4.3 Consensus size: 164
7600516 ACCTGCCACC
7600526 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGAATAGCTTAAGTCGAG
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGAATAGCTTAAGTCGAG
** *
7600591 AAGGGCTATCTGCCAAAGACCCTTAAGTTCGATTACACTCAGCTTCAAGGGCATAACATTTACAG
66 AAGGGCTATCTGCCAAAGACCCCCAAGTTCGATTACACTCAGCTTCAAGGGCACAACATTTACAG
7600656 CATAACTCAAGGCTAGAAGGGTTATCTGTTAGCA
131 CATAACTCAAGGCTAGAAGGGTTATCTGTTAGCA
* *
7600690 AAGACCTTTGAGTTCGACTACGCTCAGCTCCTAGGCACATCATTTGCAGAATAGCTTAAGTCGAG
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGAATAGCTTAAGTCGAG
* * *
7600755 AAGGGCTATCTGCCAAAGACCCCCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAG
66 AAGGGCTATCTGCCAAAGACCCCCAAGTTCGATTACACTCAGCTTCAAGGGCACAACATTTACAG
* *
7600820 CATAACTCAAGGCTAGAAGGGTTATCTGTGACCAA
131 CATAACTCAAGGCTAGAAGGGTTATCTGTTAGC-A
* * * *
7600855 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTCAAGGCTAG
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGAATAGCTTAAGTCGAG
** *
7600920 AAGGGCTATCTGCCAAAGACCCTTAAGTTCGATTACACTCAGCTTCAAGGGCATAACATTTACAG
66 AAGGGCTATCTGCCAAAGACCCCCAAGTTCGATTACACTCAGCTTCAAGGGCACAACATTTACAG
*
7600985 TATAACTCAAGGCTAGAAGGGTTATCTGTTAGCA
131 CATAACTCAAGGCTAGAAGGGTTATCTGTTAGCA
* * *
7601019 AAGACCTTTGAGTTTGACTACGCTCAGCTCCTAGGCACATCATTTGCAGAATAGCTTAAGTCGAG
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGAATAGCTTAAGTCGAG
* * * * * *
7601084 AAGGGCTATCTGCCAAAGACCCCCGAGTTCGATTTCGCTCAGCTCCAA-GGCACATCATTTGCAG
66 AAGGGCTATCTGCCAAAGACCCCCAAGTTCGATTACACTCAGCTTCAAGGGCACAACATTTACAG
* * * * * *
7601148 CATAGCTTAAGTCGAGAAGGGCTATCTG---CCA
131 CATAACTCAAGGCTAGAAGGGTTATCTGTTAGCA
** * * * *
7601179 AAGACCCCCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTT
1 AAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCACATCATTT
7601225 ACAGCATAAT
Statistics
Matches: 476, Mismatches: 57, Indels: 7
0.88 0.11 0.01
Matches are distributed among these distances:
160 24 0.05
161 14 0.03
163 35 0.07
164 254 0.53
165 149 0.31
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.24
Consensus pattern (164 bp):
AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGAATAGCTTAAGTCGAG
AAGGGCTATCTGCCAAAGACCCCCAAGTTCGATTACACTCAGCTTCAAGGGCACAACATTTACAG
CATAACTCAAGGCTAGAAGGGTTATCTGTTAGCA
Found at i:7601127 original size:329 final size:324
Alignment explanation
Indices: 7600498--7601255 Score: 1194
Period size: 329 Copynumber: 2.3 Consensus size: 324
7600488 TGCAGCTTAG
* *
7600498 CTCAAGGCCAGAAGGGCTACCTGCCACCAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCA
1 CTCAAGGCGAGAAGGGCTATCTGCCA--AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCA
* * * *
7600563 CATCATTTGCAGAATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTTAAGTTCGATTACA
64 CATCATTTGCAGCATAGCTCAAGGCTAGAAGGGCTATCTGCCAAAGACCCTTAAGTTCGATTACA
7600628 CTCAGCTTCAAGGGCATAACATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTTAGCAAAG
129 CTCAGCTTCAAGGGCATAACATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTTAGCAAAG
7600693 ACCTTTGAGTTCGACTACGCTCAGCTCCTAGGCACATCATTTGCAGAATAGCTTAAGTCGAGAAG
194 ACCTTTGAGTTCGACTACGCTCAGCTCCTAGGCACATCATTTGCAGAATAGCTTAAGTCGAGAAG
* *
7600758 GGCTATCTGCCAAAGACCCCCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAGCAT
259 GGCTATCTGCCAAAGACCCCCGAGTTCGATTACACTCAGC-TCCAAGGCACATCATTTACAGCAT
7600823 AA
323 AA
* *
7600825 CTCAAGGCTAGAAGGGTTATCTGTGACCAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGG
1 CTCAAGGCGAGAAGGGCTATC--TG-CC-AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGG
7600890 CACATCATTTGCAGCATAGCTCAAGGCTAGAAGGGCTATCTGCCAAAGACCCTTAAGTTCGATTA
62 CACATCATTTGCAGCATAGCTCAAGGCTAGAAGGGCTATCTGCCAAAGACCCTTAAGTTCGATTA
*
7600955 CACTCAGCTTCAAGGGCATAACATTTACAGTATAACTCAAGGCTAGAAGGGTTATCTGTTAGCAA
127 CACTCAGCTTCAAGGGCATAACATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTTAGCAA
*
7601020 AGACCTTTGAGTTTGACTACGCTCAGCTCCTAGGCACATCATTTGCAGAATAGCTTAAGTCGAGA
192 AGACCTTTGAGTTCGACTACGCTCAGCTCCTAGGCACATCATTTGCAGAATAGCTTAAGTCGAGA
* * *
7601085 AGGGCTATCTGCCAAAGACCCCCGAGTTCGATTTCGCTCAGCTCCAAGGCACATCATTTGCAGCA
257 AGGGCTATCTGCCAAAGACCCCCGAGTTCGATTACACTCAGCTCCAAGGCACATCATTTACAGCA
*
7601150 TAG
322 TAA
* * ** * * * *
7601153 CTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCCCGAGTTCGATTACACTCAGCTTCGAGGGCAC
1 CTCAAGGCGAGAAGGGCTATCTGCCAAAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCAC
* * *
7601218 ATCATTTACAGCATA-ATCAAGGCTAGAAGGGTTATCTG
65 ATCATTTGCAGCATAGCTCAAGGCTAGAAGGGCTATCTG
7601256 TGACCAAAAG
Statistics
Matches: 398, Mismatches: 28, Indels: 13
0.91 0.06 0.03
Matches are distributed among these distances:
324 46 0.12
325 24 0.06
326 2 0.01
327 18 0.05
328 39 0.10
329 266 0.67
330 2 0.01
331 1 0.00
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.24
Consensus pattern (324 bp):
CTCAAGGCGAGAAGGGCTATCTGCCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACA
TCATTTGCAGCATAGCTCAAGGCTAGAAGGGCTATCTGCCAAAGACCCTTAAGTTCGATTACACT
CAGCTTCAAGGGCATAACATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTTAGCAAAGAC
CTTTGAGTTCGACTACGCTCAGCTCCTAGGCACATCATTTGCAGAATAGCTTAAGTCGAGAAGGG
CTATCTGCCAAAGACCCCCGAGTTCGATTACACTCAGCTCCAAGGCACATCATTTACAGCATAA
Found at i:7601144 original size:244 final size:243
Alignment explanation
Indices: 7600498--7601362 Score: 1020
Period size: 244 Copynumber: 3.5 Consensus size: 243
7600488 TGCAGCTTAG
* * * *
7600498 CTCAAGGCCAGAAGGGCTACCTGCCACC-AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGC
1 CTCAAGGCTAGAAGGGTTATCTG-TACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGC
***
7600562 ACATCATTTGCAGAATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTTAAGTTCGATTAC
65 ACATCATTTGCAGAATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCCCGAGTTCGATTAC
* * * * * * * *
7600627 ACTCAGCTTCAAGGGCATAACATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTTAGCAAA
130 GCTCAGCTCCAA-GGCACATCATTTGCAGCATAGCTCAAGGCTAGAAGGGCTATCTG---CCAAA
* * * * * * *
7600692 GACCTTTGAGTTCGACTACGCTCAGCTCCTA-GGCACATCATTTGCAGAATAG
191 GACCCTTGAGTTCGATTACACTCAGCTTCAAGGGCACATCATTTACAGAATAA
* * * * ** * * * *
7600744 CTTAAGTCGAGAAGGGCTATCTG--CCAAAGACCCCCGAGTTCGATTACACTCAGCTTCGAGGGC
1 CTCAAGGCTAGAAGGGTTATCTGTACCAAAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGC
* * * * * * * **
7600807 ACATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTGACCAAAAGACCTTCGAGTTCGA
65 ACATCATTTGCAGAATAGCTTAAGTCGAGAAGGGCTATC--TG-CC-AAAGACCCCCGAGTTCGA
*
7600872 CTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTCAAGGCTAGAAGGGCTATCTGCCAAA
126 TTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTCAAGGCTAGAAGGGCTATCTGCCAAA
* * * *
7600937 GACCCTTAAGTTCGATTACACTCAGCTTCAAGGGCATAACATTTACAGTATAA
191 GACCCTTGAGTTCGATTACACTCAGCTTCAAGGGCACATCATTTACAGAATAA
* * * *
7600990 CTCAAGGCTAGAAGGGTTATCTGTTAGCAAAGACCTTTGAGTTTGACTACGCTCAGCTCCTAGGC
1 CTCAAGGCTAGAAGGGTTATCTG-TACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGC
*
7601055 ACATCATTTGCAGAATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCCCGAGTTCGATTTC
65 ACATCATTTGCAGAATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCCCGAGTTCGATTAC
* * *
7601120 GCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACC
130 GCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTCAAGGCTAGAAGGGCTATCTGCCAAAGACC
** * *
7601185 CCCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAGCATAA
195 CTTGAGTTCGATTACACTCAGCTTCAAGGGCACATCATTTACAGAATAA
*
7601234 -TCAAGGCTAGAAGGGTTATCTGTGACCAAAAGACCTTCGAGTTCGACTCCGCTCAGCTCCAAGG
1 CTCAAGGCTAGAAGGGTTATCTGT-ACC-AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGG
* * *
7601298 CACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCTAAAGACCTCCGAGTTCGATTA
64 CACATCATTTGCAGAATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCCCGAGTTCGATTA
7601363 TATTCAACTT
Statistics
Matches: 523, Mismatches: 84, Indels: 26
0.83 0.13 0.04
Matches are distributed among these distances:
242 1 0.00
243 26 0.05
244 239 0.46
245 69 0.13
246 56 0.11
247 2 0.00
248 78 0.15
249 52 0.10
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.24
Consensus pattern (243 bp):
CTCAAGGCTAGAAGGGTTATCTGTACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCA
CATCATTTGCAGAATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCCCGAGTTCGATTACG
CTCAGCTCCAAGGCACATCATTTGCAGCATAGCTCAAGGCTAGAAGGGCTATCTGCCAAAGACCC
TTGAGTTCGATTACACTCAGCTTCAAGGGCACATCATTTACAGAATAA
Found at i:7601268 original size:164 final size:161
Alignment explanation
Indices: 7600498--7601359 Score: 948
Period size: 164 Copynumber: 5.3 Consensus size: 161
7600488 TGCAGCTTAG
* *
7600498 CTCAAGGCCAGAAGGGCTACCTG-CCACCAAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGG
1 CTCAAGGCTAGAAGGGCTATCTGTCCA--AAGACCTTCGAGTTCGACTACGCTCAGCTTCC-AGG
**
7600561 CACATCATTTGCAGAATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTTAAGTTCGATTA
63 CACATCATTTGCAGAATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCGAGTTCGATTA
* * *
7600626 CACTCAGCTTCAAGGGCATAACATTTACAGCATAA
128 CACTCAGCTCCAA-GGCACATCATTTACAGCATAA
* * *
7600661 CTCAAGGCTAGAAGGGTTATCTGTTAGCAAAGACCTTTGAGTTCGACTACGCTCAGC-TCCTAGG
1 CTCAAGGCTAGAAGGGCTATCTG-T-CCAAAGACCTTCGAGTTCGACTACGCTCAGCTTCC-AGG
*
7600725 CACATCATTTGCAGAATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCCCGAGTTCGATTA
63 CACATCATTTGCAGAATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCGAGTTCGATTA
* *
7600790 CACTCAGCTTCGAGGGCACATCATTTACAGCATAA
128 CACTCAGC-TCCAAGGCACATCATTTACAGCATAA
*
7600825 CTCAAGGCTAGAAGGGTTATCTGTGACCAAAAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAG
1 CTCAAGGCTAGAAGGGCTATCTGT--CC-AAAGACCTTCGAGTTCGACTACGCTCAGCTTCC-AG
* * * * **
7600889 GCACATCATTTGCAGCATAGCTCAAGGCTAGAAGGGCTATCTGCCAAAGACCCTTAAGTTCGATT
62 GCACATCATTTGCAGAATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCGAGTTCGATT
* * * *
7600954 ACACTCAGCTTCAAGGGCATAACATTTACAGTATAA
127 ACACTCAGCTCCAA-GGCACATCATTTACAGCATAA
* * * *
7600990 CTCAAGGCTAGAAGGGTTATCTGTTAGCAAAGACCTTTGAGTTTGACTACGCTCAGC-TCCTAGG
1 CTCAAGGCTAGAAGGGCTATCTG-T-CCAAAGACCTTCGAGTTCGACTACGCTCAGCTTCC-AGG
* *
7601054 CACATCATTTGCAGAATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCCCGAGTTCGATTT
63 CACATCATTTGCAGAATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCGAGTTCGATTA
* * *
7601119 CGCTCAGCTCCAAGGCACATCATTTGCAGCATAG
128 CACTCAGCTCCAAGGCACATCATTTACAGCATAA
* * * ** * * *
7601153 CTTAAGTCGAGAAGGGCTATCTG-CCAAAGACCCCCGAGTTCGATTACACTCAGCTTCGAGGGCA
1 CTCAAGGCTAGAAGGGCTATCTGTCCAAAGACCTTCGAGTTCGACTACGCTCAGCTTCCA-GGCA
* * * * * * * * *
7601217 CATCATTTACAGCATA-ATCAAGGCTAGAAGGGTTATCTGTGACCAAAAGACCTTCGAGTTCGAC
65 CATCATTTGCAGAATAGCTTAAGTCGAGAAGGGCTATC--TG-CC-AAAGACCCTCGAGTTCGAT
* * * *
7601281 TCCGCTCAGCTCCAAGGCACATCATTTGCAGCATAG
126 TACACTCAGCTCCAAGGCACATCATTTACAGCATAA
* * * * *
7601317 CTTAAGTCGAGAAGGGCTATCTG-CTAAAGACCTCCGAGTTCGA
1 CTCAAGGCTAGAAGGGCTATCTGTCCAAAGACCTTCGAGTTCGA
7601360 TTATATTCAA
Statistics
Matches: 611, Mismatches: 74, Indels: 27
0.86 0.10 0.04
Matches are distributed among these distances:
160 41 0.07
161 20 0.03
162 2 0.00
163 58 0.09
164 342 0.56
165 145 0.24
166 3 0.00
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.23
Consensus pattern (161 bp):
CTCAAGGCTAGAAGGGCTATCTGTCCAAAGACCTTCGAGTTCGACTACGCTCAGCTTCCAGGCAC
ATCATTTGCAGAATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCGAGTTCGATTACAC
TCAGCTCCAAGGCACATCATTTACAGCATAA
Found at i:7601440 original size:164 final size:162
Alignment explanation
Indices: 7601107--7601443 Score: 446
Period size: 164 Copynumber: 2.1 Consensus size: 162
7601097 CAAAGACCCC
* *
7601107 CGAGTTCGATTTCGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTA
1 CGAGTTCGACTCCGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTA
* * * * *
7601172 TCTGCCAAAGACCCCCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAGCATAATCA
66 TCTGCCAAAGACCCCCGAGTTCGATTACACTCAACTTAGAGGGCAAATCACTTACAGAATAATCA
* *
7601237 AGGCTAGAAGGGTTATCTGTGACCAAAAGACCTT
131 AGGCAAGAAGGGTTATCTGT-A-CAAAAGAACTT
7601271 CGAGTTCGACTCCGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTA
1 CGAGTTCGACTCCGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTA
* * * * * *
7601336 TCTGCTAAAGACCTCCGAGTTCGATTATATTCAACTTAGA-GGCAAATCAAGCTTACATAATAGC
66 TCTGCCAAAGACCCCCGAGTTCGATTACACTCAACTTAGAGGGCAAATC-A-CTTACAGAATA-A
*
7601400 TCAATGCAAGAAGGGTTATCTGT-CAATAA-AACTGT
128 TCAAGGCAAGAAGGGTTATCTGTACAA-AAGAACT-T
7601435 CGAGTTCGA
1 CGAGTTCGA
7601444 TTCTAATCAG
Statistics
Matches: 152, Mismatches: 16, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
163 13 0.09
164 110 0.72
165 8 0.05
166 21 0.14
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.25
Consensus pattern (162 bp):
CGAGTTCGACTCCGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTA
TCTGCCAAAGACCCCCGAGTTCGATTACACTCAACTTAGAGGGCAAATCACTTACAGAATAATCA
AGGCAAGAAGGGTTATCTGTACAAAAGAACTT
Done.