Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001547.1 Hibiscus syriacus cultivar Beakdansim tig00003041_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10425128
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 40 of 51
Found at i:7784983 original size:25 final size:26
Alignment explanation
Indices: 7784940--7785002 Score: 92
Period size: 25 Copynumber: 2.4 Consensus size: 26
7784930 TATATTATAT
7784940 ATATATATATTTTCAAAATGTTTTAA
1 ATATATATATTTTCAAAATGTTTTAA
*
7784966 ATATAT-TTTTTTCAAAATGTTTTAA
1 ATATATATATTTTCAAAATGTTTTAA
*
7784991 AAACTATATATT
1 ATA-TATATATT
7785003 ATATATATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
25 20 0.62
26 9 0.28
27 3 0.09
ACGTcount: A:0.41, C:0.05, G:0.03, T:0.51
Consensus pattern (26 bp):
ATATATATATTTTCAAAATGTTTTAA
Found at i:7785054 original size:73 final size:74
Alignment explanation
Indices: 7784966--7785161 Score: 279
Period size: 73 Copynumber: 2.6 Consensus size: 74
7784956 AATGTTTTAA
7784966 ATATATTTTTTTCAAAATGTTTTAAAAACTATATATTATATATATTTTCAAAATG-TTTTAAAAA
1 ATATATTTTTTTCAAAATGTTTTAAAAACTATATATTATATATATTTTCAAAATGTTTTTAAAAA
* *
7785030 TTATATATT
66 CTATATAAT
*
7785039 ATATATTTTTTTCAAAATATTTTAAAAACTATATATTATATATATTTTCAAAATGTTTTTAAAAA
1 ATATATTTTTTTCAAAATGTTTTAAAAACTATATATTATATATATTTTCAAAATGTTTTTAAAAA
7785104 CTATATAAT
66 CTATATAAT
** *
7785113 ATATA-CATTTTCATAAAATCGTTTTCAAAACTATATTATATATATATAT
1 ATATATTTTTTTC--AAAAT-GTTTTAAAAACTATA-TAT-TATATATAT
7785162 ATATATATAT
Statistics
Matches: 110, Mismatches: 7, Indels: 7
0.89 0.06 0.06
Matches are distributed among these distances:
73 59 0.54
74 21 0.19
75 5 0.05
76 13 0.12
77 3 0.03
78 9 0.08
ACGTcount: A:0.43, C:0.06, G:0.02, T:0.48
Consensus pattern (74 bp):
ATATATTTTTTTCAAAATGTTTTAAAAACTATATATTATATATATTTTCAAAATGTTTTTAAAAA
CTATATAAT
Found at i:7785194 original size:48 final size:49
Alignment explanation
Indices: 7785105--7785208 Score: 142
Period size: 48 Copynumber: 2.2 Consensus size: 49
7785095 TTTTAAAAAC
* * *
7785105 TATATA-ATATATACATTTTCATAAAATCGTTTTCAAAACTATATTATA
1 TATATATATATATACATTTTCATAAAATCATTTACAAAACTATAATATA
*
7785153 TATATATATATATATATATTTCA-AAAATCATTTAC-AAACTATAATATA
1 TATATATATATATACAT-TTTCATAAAATCATTTACAAAACTATAATATA
7785201 TATATATA
1 TATATATA
7785209 AATAAAAATA
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
48 26 0.52
49 19 0.38
50 5 0.10
ACGTcount: A:0.47, C:0.09, G:0.01, T:0.43
Consensus pattern (49 bp):
TATATATATATATACATTTTCATAAAATCATTTACAAAACTATAATATA
Found at i:7785220 original size:48 final size:50
Alignment explanation
Indices: 7785121--7785220 Score: 132
Period size: 48 Copynumber: 2.0 Consensus size: 50
7785111 ATATATACAT
* * * * * *
7785121 TTTCATAAAATCGTTTTCAAAACTATATTATATATATATATATATATATA
1 TTTCATAAAATCATTTACAAAACTATAATATATATATATAAATAAAAATA
7785171 TTTCA-AAAATCATTTAC-AAACTATAATATATATATATAAATAAAAATA
1 TTTCATAAAATCATTTACAAAACTATAATATATATATATAAATAAAAATA
7785219 TT
1 TT
7785221 CAGACGAAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
48 29 0.66
49 10 0.23
50 5 0.11
ACGTcount: A:0.49, C:0.08, G:0.01, T:0.42
Consensus pattern (50 bp):
TTTCATAAAATCATTTACAAAACTATAATATATATATATAAATAAAAATA
Found at i:7785876 original size:14 final size:14
Alignment explanation
Indices: 7785857--7785886 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
7785847 AATTTTCGTA
7785857 TAATTTAGATATTT
1 TAATTTAGATATTT
7785871 TAATTTAGATATTT
1 TAATTTAGATATTT
7785885 TA
1 TA
7785887 TTAATAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.57
Consensus pattern (14 bp):
TAATTTAGATATTT
Found at i:7786239 original size:20 final size:20
Alignment explanation
Indices: 7786209--7786263 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
7786199 AAAATGACCA
*
7786209 ACAAATTCGCAACGCAATCT
1 ACAATTTCGCAACGCAATCT
* * * *
7786229 CCAATTTCGCAACCCAGTTT
1 ACAATTTCGCAACGCAATCT
7786249 ACAATTTCGCAACGC
1 ACAATTTCGCAACGC
7786264 GAATTTGTAA
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.33, C:0.33, G:0.11, T:0.24
Consensus pattern (20 bp):
ACAATTTCGCAACGCAATCT
Found at i:7786298 original size:20 final size:20
Alignment explanation
Indices: 7786275--7786383 Score: 123
Period size: 20 Copynumber: 5.5 Consensus size: 20
7786265 AATTTGTAAA
*
7786275 TCGCAACACAGAAGTCAAAT
1 TCGCAACGCAGAAGTCAAAT
7786295 TCGCAACGC-GATAGTCAAAT
1 TCGCAACGCAGA-AGTCAAAT
* * *
7786315 CCGCAACACAAAAGTCAAAT
1 TCGCAACGCAGAAGTCAAAT
* *
7786335 TCACAACGCAAAAGTCAAAT
1 TCGCAACGCAGAAGTCAAAT
*
7786355 TCGTAACGC-GAAAGTCAAAT
1 TCGCAACGCAG-AAGTCAAAT
7786375 TCGCAACGC
1 TCGCAACGC
7786384 GAAACACAAT
Statistics
Matches: 75, Mismatches: 11, Indels: 6
0.82 0.12 0.07
Matches are distributed among these distances:
19 2 0.03
20 72 0.96
21 1 0.01
ACGTcount: A:0.42, C:0.27, G:0.16, T:0.16
Consensus pattern (20 bp):
TCGCAACGCAGAAGTCAAAT
Found at i:7786298 original size:40 final size:40
Alignment explanation
Indices: 7786254--7786386 Score: 148
Period size: 40 Copynumber: 3.3 Consensus size: 40
7786244 AGTTTACAAT
*
7786254 TTCGCAACGCGAATTTGT-AAATCGCAACACAGAAGTCAAA
1 TTCGCAACGCGAA-TAGTCAAATCGCAACACAGAAGTCAAA
*
7786294 TTCGCAACGCG-ATAGTCAAATCCGCAACACAAAAGTCAAA
1 TTCGCAACGCGAATAGTCAAAT-CGCAACACAGAAGTCAAA
* * * *
7786334 TTCACAACGC-AAAAGTCAAATTCGTAACGC-GAAAGTCAAA
1 TTCGCAACGCGAATAGTCAAA-TCGCAACACAG-AAGTCAAA
7786374 TTCGCAACGCGAA
1 TTCGCAACGCGAA
7786387 ACACAATATT
Statistics
Matches: 79, Mismatches: 8, Indels: 11
0.81 0.08 0.11
Matches are distributed among these distances:
38 3 0.04
39 5 0.06
40 68 0.86
41 3 0.04
ACGTcount: A:0.41, C:0.25, G:0.17, T:0.17
Consensus pattern (40 bp):
TTCGCAACGCGAATAGTCAAATCGCAACACAGAAGTCAAA
Found at i:7786384 original size:20 final size:20
Alignment explanation
Indices: 7786286--7786387 Score: 141
Period size: 20 Copynumber: 5.1 Consensus size: 20
7786276 CGCAACACAG
7786286 AAGTCAAATTCGCAACGCGA
1 AAGTCAAATTCGCAACGCGA
* * * *
7786306 TAGTCAAATCCGCAACACAA
1 AAGTCAAATTCGCAACGCGA
* *
7786326 AAGTCAAATTCACAACGCAA
1 AAGTCAAATTCGCAACGCGA
*
7786346 AAGTCAAATTCGTAACGCGA
1 AAGTCAAATTCGCAACGCGA
7786366 AAGTCAAATTCGCAACGCGA
1 AAGTCAAATTCGCAACGCGA
7786386 AA
1 AA
7786388 CACAATATTA
Statistics
Matches: 70, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 70 1.00
ACGTcount: A:0.44, C:0.25, G:0.16, T:0.16
Consensus pattern (20 bp):
AAGTCAAATTCGCAACGCGA
Found at i:7787259 original size:14 final size:14
Alignment explanation
Indices: 7787242--7787273 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
7787232 GCGATTTTAG
7787242 TTTCGCGTTGCGAT
1 TTTCGCGTTGCGAT
*
7787256 TTTCTCGTTGCGAT
1 TTTCGCGTTGCGAT
7787270 TTTC
1 TTTC
7787274 ATTTTTGCGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.06, C:0.22, G:0.22, T:0.50
Consensus pattern (14 bp):
TTTCGCGTTGCGAT
Found at i:7788602 original size:29 final size:29
Alignment explanation
Indices: 7788557--7788637 Score: 108
Period size: 29 Copynumber: 2.8 Consensus size: 29
7788547 CCCGTTGACC
* * **
7788557 GGTGTTATTTTGATAAATAATTTGGTTTT
1 GGTGTTATTCTGGTAAATAATTCAGTTTT
7788586 GGTGTTATTCTGGTAAATAATTCAGTTTT
1 GGTGTTATTCTGGTAAATAATTCAGTTTT
* *
7788615 GGTGCTATTCTGGTAATTAATTC
1 GGTGTTATTCTGGTAAATAATTC
7788638 GAAATGGGTG
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 46 1.00
ACGTcount: A:0.23, C:0.06, G:0.21, T:0.49
Consensus pattern (29 bp):
GGTGTTATTCTGGTAAATAATTCAGTTTT
Found at i:7791323 original size:42 final size:42
Alignment explanation
Indices: 7791264--7791364 Score: 202
Period size: 42 Copynumber: 2.4 Consensus size: 42
7791254 CCCACTTCGA
7791264 GAGCCATCACCTGATCGGGCCGATTCTACAGCTCGACACCCG
1 GAGCCATCACCTGATCGGGCCGATTCTACAGCTCGACACCCG
7791306 GAGCCATCACCTGATCGGGCCGATTCTACAGCTCGACACCCG
1 GAGCCATCACCTGATCGGGCCGATTCTACAGCTCGACACCCG
7791348 GAGCCATCACCTGATCG
1 GAGCCATCACCTGATCG
7791365 AGCCTCTTCT
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 59 1.00
ACGTcount: A:0.22, C:0.38, G:0.24, T:0.17
Consensus pattern (42 bp):
GAGCCATCACCTGATCGGGCCGATTCTACAGCTCGACACCCG
Found at i:7791952 original size:21 final size:21
Alignment explanation
Indices: 7791926--7792003 Score: 77
Period size: 21 Copynumber: 3.7 Consensus size: 21
7791916 GATCCACCTA
* *
7791926 TCATCATTCAATAGGCCTCTC
1 TCATCATTCAAGAGGCCCCTC
7791947 TCATCA-TCGAAGAGGCCCCTC
1 TCATCATTC-AAGAGGCCCCTC
* * *
7791968 CCAACATTCAAGAGGCCCCTA
1 TCATCATTCAAGAGGCCCCTC
* *
7791989 TCATCGTTAAAGAGG
1 TCATCATTCAAGAGG
7792004 TCTCGCCCGC
Statistics
Matches: 46, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
20 2 0.04
21 42 0.91
22 2 0.04
ACGTcount: A:0.28, C:0.32, G:0.17, T:0.23
Consensus pattern (21 bp):
TCATCATTCAAGAGGCCCCTC
Found at i:7793436 original size:69 final size:67
Alignment explanation
Indices: 7793351--7793526 Score: 236
Period size: 66 Copynumber: 2.6 Consensus size: 67
7793341 TGGGGTACAC
*
7793351 TTTTTTTGCTTTTTTAATTGAATTT-TACATTGAAAGTTGATTTGTTTAA-TTGATGAGGAAATA
1 TTTTTTTGCTTGTTTAATTGAATTTGT--A---AAAGTTGATTTGTTTAATTTGATGAGGAAATA
*
7793414 AGAATTA
61 AGAACTA
* *
7793421 -TTTTTTGCTTGTTTAATTG-ATTTGTAAAAGTTGATTTGTTTAATTTGATGTGTAAATAAGAAC
1 TTTTTTTGCTTGTTTAATTGAATTTGTAAAAGTTGATTTGTTTAATTTGATGAGGAAATAAGAAC
7793484 TA
66 TA
7793486 TTTTTTTGCTTGTTTAATTG-ATTTGTAAAAGTTGATTTGTT
1 TTTTTTTGCTTGTTTAATTGAATTTGTAAAAGTTGATTTGTT
7793527 GTTTTAAATT
Statistics
Matches: 99, Mismatches: 4, Indels: 10
0.88 0.04 0.09
Matches are distributed among these distances:
64 17 0.17
65 18 0.18
66 40 0.40
67 1 0.01
68 4 0.04
69 19 0.19
ACGTcount: A:0.28, C:0.03, G:0.16, T:0.53
Consensus pattern (67 bp):
TTTTTTTGCTTGTTTAATTGAATTTGTAAAAGTTGATTTGTTTAATTTGATGAGGAAATAAGAAC
TA
Found at i:7793488 original size:65 final size:65
Alignment explanation
Indices: 7793383--7793526 Score: 245
Period size: 66 Copynumber: 2.2 Consensus size: 65
7793373 TTTTACATTG
*
7793383 AAAGTTGATTTGTTTAATTGATGAGGAAATAAGAATTA-TTTTTTGCTTGTTTAATTGATTTGTA
1 AAAGTTGATTTGTTTAATTGATGAGGAAATAAGAACTATTTTTTTGCTTGTTTAATTGATTTGTA
* *
7793447 AAAGTTGATTTGTTTAATTTGATGTGTAAATAAGAACTATTTTTTTGCTTGTTTAATTGATTTGT
1 AAAGTTGATTTGTTTAA-TTGATGAGGAAATAAGAACTATTTTTTTGCTTGTTTAATTGATTTGT
7793512 A
65 A
7793513 AAAGTTGATTTGTT
1 AAAGTTGATTTGTT
7793527 GTTTTAAATT
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
64 17 0.23
65 18 0.24
66 40 0.53
ACGTcount: A:0.30, C:0.02, G:0.18, T:0.50
Consensus pattern (65 bp):
AAAGTTGATTTGTTTAATTGATGAGGAAATAAGAACTATTTTTTTGCTTGTTTAATTGATTTGTA
Found at i:7793585 original size:20 final size:20
Alignment explanation
Indices: 7793560--7793597 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
7793550 GTTGAAGGTA
*
7793560 CAAATTCGCAACGCGAAAGT
1 CAAATTCGCAACACGAAAGT
7793580 CAAATTCGCAACACGAAA
1 CAAATTCGCAACACGAAA
7793598 TAAGCGTTGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.45, C:0.26, G:0.16, T:0.13
Consensus pattern (20 bp):
CAAATTCGCAACACGAAAGT
Found at i:7794016 original size:18 final size:18
Alignment explanation
Indices: 7793993--7794028 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
7793983 AATCCTGTTG
* *
7793993 TGATTGGGATTTTGATTT
1 TGATTGCGATTTTAATTT
7794011 TGATTGCGATTTTAATTT
1 TGATTGCGATTTTAATTT
7794029 CCTTTTGCTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.19, C:0.03, G:0.22, T:0.56
Consensus pattern (18 bp):
TGATTGCGATTTTAATTT
Found at i:7797325 original size:21 final size:21
Alignment explanation
Indices: 7797277--7797429 Score: 110
Period size: 20 Copynumber: 7.6 Consensus size: 21
7797267 TAAATTCGTA
* **
7797277 TTGCGAATTCGAAA-ATCTAG
1 TTGCGAATTTGAAATATCGCG
*
7797297 TTGCGAATTTGAAATTTCGCG
1 TTGCGAATTTGAAATATCGCG
* *
7797318 TTGTGAATTTG-ACTATCGCG
1 TTGCGAATTTGAAATATCGCG
*
7797338 TTGCGAATTTG-ACTATCGCG
1 TTGCGAATTTGAAATATCGCG
*
7797358 TTGCG-ATTT-ACAGAT-TCGTG
1 TTGCGAATTTGA-A-ATATCGCG
*
7797378 TTGCG-ATTT-ACAGAT-TCGCT
1 TTGCGAATTTGA-A-ATATCGCG
*
7797398 TTGCGAATTTG-ACTATCGCG
1 TTGCGAATTTGAAATATCGCG
7797418 TTGCGAATTTGA
1 TTGCGAATTTGA
7797430 CTTCTGTGTT
Statistics
Matches: 111, Mismatches: 14, Indels: 15
0.79 0.10 0.11
Matches are distributed among these distances:
19 5 0.05
20 88 0.79
21 18 0.16
ACGTcount: A:0.23, C:0.16, G:0.24, T:0.37
Consensus pattern (21 bp):
TTGCGAATTTGAAATATCGCG
Found at i:7797396 original size:80 final size:80
Alignment explanation
Indices: 7797312--7797483 Score: 265
Period size: 80 Copynumber: 2.1 Consensus size: 80
7797302 AATTTGAAAT
* * *
7797312 TTCGCGTTGTGAATTTGACTATCGCGTTGCGAATTTGACTATC-GCGTTGCGATTTACAGATTCG
1 TTCGCGTTGCGAATTTGACTATCGCGTTGCGAATTTGACT-TCTGCGTTGCGATTTACAAATTCA
*
7797376 TGTTGCGATTTACAGA
65 CGTTGCGATTTACAGA
* * *
7797392 TTCGCTTTGCGAATTTGACTATCGCGTTGCGAATTTGACTTCTGTGTTGTGATTTACAAATTCAC
1 TTCGCGTTGCGAATTTGACTATCGCGTTGCGAATTTGACTTCTGCGTTGCGATTTACAAATTCAC
7797457 GTTGCGATTTACAGA
66 GTTGCGATTTACAGA
7797472 TTCGCGTTGCGA
1 TTCGCGTTGCGA
7797484 TTTACAGATT
Statistics
Matches: 83, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
79 2 0.02
80 81 0.98
ACGTcount: A:0.20, C:0.18, G:0.24, T:0.38
Consensus pattern (80 bp):
TTCGCGTTGCGAATTTGACTATCGCGTTGCGAATTTGACTTCTGCGTTGCGATTTACAAATTCAC
GTTGCGATTTACAGA
Found at i:7797409 original size:60 final size:60
Alignment explanation
Indices: 7797333--7797495 Score: 201
Period size: 60 Copynumber: 2.7 Consensus size: 60
7797323 AATTTGACTA
*
7797333 TCGCGTTGCGAATTTGACTATCGCGTTGCGATTTACAGATTCGTGTTGCGATTTACAGAT
1 TCGCGTTGCGAATTTGACTATCGCGTTGCGATTTACAGATTCGTGTTGCGATTTACAAAT
* *
7797393 TCGCTTTGCGAATTTGACTATCGCGTTGCGAATTT---GACTTCTGTGTTGTGATTTACAAAT
1 TCGCGTTGCGAATTTGACTATCGCGTTGCG-ATTTACAGA-TTC-GTGTTGCGATTTACAAAT
* *
7797453 TCACGTTGCG-ATTT-ACAGATTCGCGTTGCGATTTACAGATTCG
1 TCGCGTTGCGAATTTGAC-TA-TCGCGTTGCGATTTACAGATTCG
7797496 CGATGCGAAT
Statistics
Matches: 89, Mismatches: 6, Indels: 16
0.80 0.05 0.14
Matches are distributed among these distances:
58 4 0.04
59 12 0.13
60 64 0.72
61 7 0.08
62 2 0.02
ACGTcount: A:0.20, C:0.18, G:0.23, T:0.38
Consensus pattern (60 bp):
TCGCGTTGCGAATTTGACTATCGCGTTGCGATTTACAGATTCGTGTTGCGATTTACAAAT
Found at i:7797440 original size:20 final size:20
Alignment explanation
Indices: 7797296--7797431 Score: 136
Period size: 20 Copynumber: 6.8 Consensus size: 20
7797286 CGAAAATCTA
* *
7797296 GTTGCGAATTTGAAATTTCGC
1 GTTGCGAATTTG-ACTATCGC
*
7797317 GTTGTGAATTTGACTATCGC
1 GTTGCGAATTTGACTATCGC
7797337 GTTGCGAATTTGACTATCGC
1 GTTGCGAATTTGACTATCGC
* *
7797357 GTTGCG-ATTT-ACAGATTCGT
1 GTTGCGAATTTGAC-TA-TCGC
*
7797377 GTTGCG-ATTT-ACAGATTCGC
1 GTTGCGAATTTGAC-TA-TCGC
*
7797397 TTTGCGAATTTGACTATCGC
1 GTTGCGAATTTGACTATCGC
7797417 GTTGCGAATTTGACT
1 GTTGCGAATTTGACT
7797432 TCTGTGTTGT
Statistics
Matches: 101, Mismatches: 10, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
18 2 0.02
19 5 0.05
20 76 0.75
21 16 0.16
22 2 0.02
ACGTcount: A:0.21, C:0.17, G:0.24, T:0.38
Consensus pattern (20 bp):
GTTGCGAATTTGACTATCGC
Found at i:7797465 original size:20 final size:20
Alignment explanation
Indices: 7797437--7797508 Score: 99
Period size: 20 Copynumber: 3.5 Consensus size: 20
7797427 TGACTTCTGT
* * *
7797437 GTTGTGATTTACAAATTCAC
1 GTTGCGATTTACAGATTCGC
7797457 GTTGCGATTTACAGATTCGC
1 GTTGCGATTTACAGATTCGC
7797477 GTTGCGATTTACAGATTCGC
1 GTTGCGATTTACAGATTCGC
*
7797497 GATGCGAATTTA
1 GTTGCG-ATTTA
7797509 TTGGTCATTT
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
20 42 0.89
21 5 0.11
ACGTcount: A:0.25, C:0.17, G:0.22, T:0.36
Consensus pattern (20 bp):
GTTGCGATTTACAGATTCGC
Found at i:7797497 original size:80 final size:80
Alignment explanation
Indices: 7797312--7797507 Score: 254
Period size: 80 Copynumber: 2.5 Consensus size: 80
7797302 AATTTGAAAT
* * * **
7797312 TTCGCGTTGTGAATTTGACTATCGCGTTGCGAATTTGACTATCGCGTTGCGATTTACAGATTCGT
1 TTCGCGTTGCGAATTTGACGATCGCGTTGCGAATTTGACTATCGCGTTGCGATTTACAAATTCAC
7797377 GTTGCGATTTACAGA
66 GTTGCGATTTACAGA
* * * *
7797392 TTCGCTTTGCGAATTTGACTATCGCGTTGCGAATTTGACT-TCTGTGTTGTGATTTACAAATTCA
1 TTCGCGTTGCGAATTTGACGATCGCGTTGCGAATTTGACTATC-GCGTTGCGATTTACAAATTCA
7797456 CGTTGCGATTTACAGA
65 CGTTGCGATTTACAGA
*
7797472 TTCGCGTTGCG-ATTT-ACAGATTCGCGATGCGAATTT
1 TTCGCGTTGCGAATTTGAC-GA-TCGCGTTGCGAATTT
7797508 ATTGGTCATT
Statistics
Matches: 103, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
78 2 0.02
79 7 0.07
80 94 0.91
ACGTcount: A:0.20, C:0.18, G:0.23, T:0.38
Consensus pattern (80 bp):
TTCGCGTTGCGAATTTGACGATCGCGTTGCGAATTTGACTATCGCGTTGCGATTTACAAATTCAC
GTTGCGATTTACAGA
Found at i:7803555 original size:21 final size:22
Alignment explanation
Indices: 7803531--7803583 Score: 58
Period size: 21 Copynumber: 2.5 Consensus size: 22
7803521 TTTTCTTTAA
7803531 AATATTATATGTTAAAT-AA-TT
1 AATATTATAT-TTAAATAAATTT
* *
7803552 AATA-TATCTTTTAATAAATTT
1 AATATTATATTTAAATAAATTT
7803573 AATATTATATT
1 AATATTATATT
7803584 AAGATTTCTT
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
19 5 0.19
20 6 0.23
21 10 0.38
22 5 0.19
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (22 bp):
AATATTATATTTAAATAAATTT
Found at i:7811798 original size:21 final size:21
Alignment explanation
Indices: 7811772--7811814 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
7811762 CAAGTATTAG
*
7811772 TCAAGAAGATCCTGCGAGTGC
1 TCAAGAAGATCCTACGAGTGC
*
7811793 TCAAGAAGATCCTACGATTGC
1 TCAAGAAGATCCTACGAGTGC
7811814 T
1 T
7811815 GAGGATACTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.23
Consensus pattern (21 bp):
TCAAGAAGATCCTACGAGTGC
Found at i:7816377 original size:14 final size:14
Alignment explanation
Indices: 7816358--7816393 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
7816348 CAGCATCCGG
*
7816358 AACCGTAACACCGC
1 AACCGTAACACCAC
*
7816372 AACCGTGACACCAC
1 AACCGTAACACCAC
7816386 AACCGTAA
1 AACCGTAA
7816394 TTTAATACTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.39, C:0.39, G:0.14, T:0.08
Consensus pattern (14 bp):
AACCGTAACACCAC
Found at i:7818734 original size:15 final size:15
Alignment explanation
Indices: 7818709--7818746 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
7818699 TTTCAAGAAA
*
7818709 ATATA-TTAATATTT
1 ATATATTTAATATAT
*
7818723 ATATTTTTAATATAT
1 ATATATTTAATATAT
7818738 ATATATTTA
1 ATATATTTA
7818747 GGTTTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
14 4 0.20
15 16 0.80
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
ATATATTTAATATAT
Found at i:7818752 original size:23 final size:23
Alignment explanation
Indices: 7818708--7818752 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
7818698 ATTTCAAGAA
*
7818708 AATATATTAATATTTATATTTTT
1 AATATATTAATATTTAGATTTTT
*
7818731 AATATA-TATATATTTAGGTTTT
1 AATATATTA-ATATTTAGATTTT
7818753 ATAAATAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 2 0.11
23 17 0.89
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (23 bp):
AATATATTAATATTTAGATTTTT
Found at i:7818819 original size:27 final size:25
Alignment explanation
Indices: 7818772--7818821 Score: 64
Period size: 27 Copynumber: 1.9 Consensus size: 25
7818762 TTTCAAGAAA
*
7818772 ATATATTAATATTTATATTTTTAAT
1 ATATATTAATATTTAGATTTTTAAT
*
7818797 ATATATATATATATTTAGGTTTTTA
1 ATATAT-TA-ATATTTAGATTTTTA
7818822 TAAATAAGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 6 0.29
26 2 0.10
27 13 0.62
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (25 bp):
ATATATTAATATTTAGATTTTTAAT
Found at i:7819368 original size:27 final size:27
Alignment explanation
Indices: 7819313--7819366 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
7819303 AAATAAAAGG
* *
7819313 ATAATAATAAAAATAAATTACAATTAA
1 ATAATAATAAAAACAAATTAAAATTAA
*
7819340 ATAATGATAAAAACAAA-TAAAATTAA
1 ATAATAATAAAAACAAATTAAAATTAA
7819366 A
1 A
7819367 ATTATAGGGT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.69, C:0.04, G:0.02, T:0.26
Consensus pattern (27 bp):
ATAATAATAAAAACAAATTAAAATTAA
Found at i:7820565 original size:3 final size:3
Alignment explanation
Indices: 7820557--7820595 Score: 62
Period size: 3 Copynumber: 13.0 Consensus size: 3
7820547 TTTGGGCCTG
7820557 TAA TAA TAA TAA TAA -AA TAA TAA TAA TTAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA
7820596 ATAAAATGGA
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
2 2 0.06
3 29 0.85
4 3 0.09
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:7824038 original size:19 final size:19
Alignment explanation
Indices: 7824010--7824053 Score: 79
Period size: 19 Copynumber: 2.3 Consensus size: 19
7824000 CCAGCCATGT
*
7824010 ATTTGCCAGTCTTGTAGTC
1 ATTTGTCAGTCTTGTAGTC
7824029 ATTTGTCAGTCTTGTAGTC
1 ATTTGTCAGTCTTGTAGTC
7824048 ATTTGT
1 ATTTGT
7824054 GATCATGTTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.16, C:0.16, G:0.20, T:0.48
Consensus pattern (19 bp):
ATTTGTCAGTCTTGTAGTC
Found at i:7831512 original size:25 final size:23
Alignment explanation
Indices: 7831466--7831514 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 23
7831456 ATTTCAAGAA
*
7831466 AATATATTAATATTTATATTTTT
1 AATATATTAATATTTAGATTTTT
*
7831489 AATATATATATATATTTAGGTTTTT
1 AATATAT-TA-ATATTTAGATTTTT
7831514 A
1 A
7831515 TAAATAAGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 7 0.32
24 2 0.09
25 13 0.59
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (23 bp):
AATATATTAATATTTAGATTTTT
Found at i:7832045 original size:27 final size:27
Alignment explanation
Indices: 7831990--7832043 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
7831980 AAGTAAAAGG
*
7831990 ATAATAATAAAAATAAATTACAATTAA
1 ATAATAATAAAAATAAATTAAAATTAA
* *
7832017 ATAATGATAAAAA-CAATTAAAATTAA
1 ATAATAATAAAAATAAATTAAAATTAA
7832043 A
1 A
7832044 ATTATAGGGT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 12 0.50
27 12 0.50
ACGTcount: A:0.67, C:0.04, G:0.02, T:0.28
Consensus pattern (27 bp):
ATAATAATAAAAATAAATTAAAATTAA
Found at i:7833210 original size:18 final size:17
Alignment explanation
Indices: 7833156--7833204 Score: 53
Period size: 19 Copynumber: 2.7 Consensus size: 17
7833146 TTGGACTCTC
* *
7833156 AGTGCATCGGTGCACTAA
1 AGTGCATCGATGCA-TCA
7833174 GAGTGCATCGATGCATCA
1 -AGTGCATCGATGCATCA
7833192 AGTGCATTCGATG
1 AGTGCA-TCGATG
7833205 TTTCAAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 6 0.22
18 8 0.30
19 13 0.48
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (17 bp):
AGTGCATCGATGCATCA
Found at i:7833309 original size:65 final size:65
Alignment explanation
Indices: 7833175--7833335 Score: 211
Period size: 65 Copynumber: 2.5 Consensus size: 65
7833165 GTGCACTAAG
* * *
7833175 AGTGCATCGATGCATCAAGTGCATTCGATG-TTTCAAAATAGCCAGAGTGCATCGATGCATGGCT
1 AGTGCATCGATGCATCAAATGCATTCGATGTTTTCAAAATAGCCACAGTGCATCAATGCATGGCT
* * *
7833239 AGTGCATCGATGCATCAAATGCATTTGATGTTTTCATAAA-ATCCTCAGTGCATCAATGCATGG-
1 AGTGCATCGATGCATCAAATGCATTCGATGTTTTCA-AAATAGCCACAGTGCATCAATGCATGGC
7833302 T
65 T
* *
7833303 ATGTGCATCGATGCATGAAATACATTCGATGTT
1 A-GTGCATCGATGCATCAAATGCATTCGATGTT
7833336 CAATTTAATT
Statistics
Matches: 85, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
64 30 0.35
65 52 0.61
66 3 0.04
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30
Consensus pattern (65 bp):
AGTGCATCGATGCATCAAATGCATTCGATGTTTTCAAAATAGCCACAGTGCATCAATGCATGGCT
Found at i:7834025 original size:25 final size:26
Alignment explanation
Indices: 7833997--7834045 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
7833987 ATATAAATAT
*
7833997 TAAGTTCAAAA-ATCCATAAAACAAA
1 TAAGTTCAAAACATCCAAAAAACAAA
7834022 TAAGTTCAAAACATCCAAAAAACA
1 TAAGTTCAAAACATCCAAAAAACA
7834046 TCAAGTTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 11 0.50
26 11 0.50
ACGTcount: A:0.59, C:0.18, G:0.04, T:0.18
Consensus pattern (26 bp):
TAAGTTCAAAACATCCAAAAAACAAA
Found at i:7835969 original size:23 final size:22
Alignment explanation
Indices: 7835939--7836018 Score: 99
Period size: 22 Copynumber: 3.6 Consensus size: 22
7835929 GCATGGCCTT
7835939 GTGCATCGATGCACATTCAAGG
1 GTGCATCGATGCACATTCAAGG
* * *
7835961 CGTGCATCGGTGCACCTTC-ATG
1 -GTGCATCGATGCACATTCAAGG
*
7835983 GTGTATCGATGCACATTCAAGG
1 GTGCATCGATGCACATTCAAGG
*
7836005 ATGCATCGATGCAC
1 GTGCATCGATGCAC
7836019 TGCTAGGTGT
Statistics
Matches: 47, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
21 15 0.32
22 16 0.34
23 16 0.34
ACGTcount: A:0.24, C:0.25, G:0.26, T:0.25
Consensus pattern (22 bp):
GTGCATCGATGCACATTCAAGG
Found at i:7835995 original size:21 final size:21
Alignment explanation
Indices: 7835939--7836018 Score: 97
Period size: 21 Copynumber: 3.7 Consensus size: 21
7835929 GCATGGCCTT
7835939 GTGCATCGATGCACATTCAAGG
1 GTGCATCGATGCACATTCAA-G
* * *
7835961 CGTGCATCGGTGCACCTTCATG
1 -GTGCATCGATGCACATTCAAG
*
7835983 GTGTATCGATGCACATTCAAG
1 GTGCATCGATGCACATTCAAG
7836004 GATGCATCGATGCAC
1 G-TGCATCGATGCAC
7836019 TGCTAGGTGT
Statistics
Matches: 48, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
21 18 0.38
22 13 0.27
23 17 0.35
ACGTcount: A:0.24, C:0.25, G:0.26, T:0.25
Consensus pattern (21 bp):
GTGCATCGATGCACATTCAAG
Found at i:7836035 original size:43 final size:44
Alignment explanation
Indices: 7835943--7836038 Score: 126
Period size: 43 Copynumber: 2.2 Consensus size: 44
7835933 GGCCTTGTGC
* * *
7835943 ATCGATGCACATTCAAGGCGTGCATCGGTGCACCTTCATGGTGT
1 ATCGATGCACATTCAAGGCATGCATCGATGCACCTGCATGGTGT
7835987 ATCGATGCACATTCAAGG-ATGCATCGATGCA-CTGC-TAGGTGT
1 ATCGATGCACATTCAAGGCATGCATCGATGCACCTGCAT-GGTGT
7836029 ATTCGATGCA
1 A-TCGATGCA
7836039 TGAAGTATAA
Statistics
Matches: 47, Mismatches: 3, Indels: 5
0.85 0.05 0.09
Matches are distributed among these distances:
41 1 0.02
42 9 0.19
43 19 0.40
44 18 0.38
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (44 bp):
ATCGATGCACATTCAAGGCATGCATCGATGCACCTGCATGGTGT
Found at i:7836752 original size:21 final size:21
Alignment explanation
Indices: 7836726--7836770 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
7836716 TGCTTTTCCT
7836726 ATCTAATTTGCATCCTCCATA
1 ATCTAATTTGCATCCTCCATA
7836747 ATCTAATTTGCATCCTCCATA
1 ATCTAATTTGCATCCTCCATA
7836768 ATC
1 ATC
7836771 CGTATCAGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.04, T:0.38
Consensus pattern (21 bp):
ATCTAATTTGCATCCTCCATA
Found at i:7839961 original size:18 final size:17
Alignment explanation
Indices: 7839907--7839955 Score: 53
Period size: 19 Copynumber: 2.7 Consensus size: 17
7839897 TTGGACTCTC
* *
7839907 AGTGCATCGGTGCACTAA
1 AGTGCATCGATGCA-TCA
7839925 GAGTGCATCGATGCATCA
1 -AGTGCATCGATGCATCA
7839943 AGTGCATTCGATG
1 AGTGCA-TCGATG
7839956 TTTCAAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 6 0.22
18 8 0.30
19 13 0.48
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (17 bp):
AGTGCATCGATGCATCA
Found at i:7840060 original size:65 final size:65
Alignment explanation
Indices: 7839927--7840086 Score: 227
Period size: 65 Copynumber: 2.5 Consensus size: 65
7839917 TGCACTAAGA
* *
7839927 GTGCATCGATGCATCAAGTGCATTCGATG-TTTCAAAATAGCCAGAGTGCATCGATGCATGGCTG
1 GTGCATCGATGCATCAAATGCATTCGATGTTTTCAAAATAGCCACAGTGCATCGATGCATGGCTG
* *
7839991 GTGCATCGATGCATCAAATGCATTCGATGTTTTCATAAA-ATCCTCAGTGCATCGATGCATGG-T
1 GTGCATCGATGCATCAAATGCATTCGATGTTTTCA-AAATAGCCACAGTGCATCGATGCATGGCT
*
7840054 AT
65 -G
*
7840056 GTGCATCGATGCATAAAATGCATTCGATGTT
1 GTGCATCGATGCATCAAATGCATTCGATGTT
7840087 CAATTTAATT
Statistics
Matches: 87, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
64 29 0.33
65 55 0.63
66 3 0.03
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (65 bp):
GTGCATCGATGCATCAAATGCATTCGATGTTTTCAAAATAGCCACAGTGCATCGATGCATGGCTG
Found at i:7840128 original size:65 final size:63
Alignment explanation
Indices: 7839927--7840134 Score: 210
Period size: 65 Copynumber: 3.2 Consensus size: 63
7839917 TGCACTAAGA
* * * *
7839927 GTGCATCGATGCATCAAGTGCATTCGATGTTTCA-AAATAGC-CAGAGTGCATCGATGCATGGCT
1 GTGCATCGATGCATAAAATGCATTCGATGTTTCATAAA-ATCTC--AGTGCATCGATGCATGGTT
7839990 G
63 G
*
7839991 GTGCATCGATGCATCAAATGCATTCGATGTTTTCATAAAATCCTCAGTGCATCGATGCATGGTAT
1 GTGCATCGATGCATAAAATGCATTCGATG-TTTCATAAAAT-CTCAGTGCATCGATGCATGGT-T
7840056 -
63 G
**
7840056 GTGCATCGATGCATAAAATGCATTCGATG-TTCAATTTAAT-TCATGGTGCATCGATGCATGGAT
1 GTGCATCGATGCATAAAATGCATTCGATGTTTC-ATAAAATCTCA--GTGCATCGATGCATGG-T
7840119 TG
62 TG
* *
7840121 GTACATCGGTGCAT
1 GTGCATCGATGCAT
7840135 CACTCTGAAA
Statistics
Matches: 126, Mismatches: 8, Indels: 19
0.82 0.05 0.12
Matches are distributed among these distances:
62 3 0.02
63 3 0.02
64 50 0.40
65 64 0.51
66 5 0.04
67 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.31
Consensus pattern (63 bp):
GTGCATCGATGCATAAAATGCATTCGATGTTTCATAAAATCTCAGTGCATCGATGCATGGTTG
Found at i:7841155 original size:3 final size:3
Alignment explanation
Indices: 7841147--7841243 Score: 106
Period size: 3 Copynumber: 32.0 Consensus size: 3
7841137 TTTGGGCCTG
* * * ** *
7841147 TAA TAA TAA TAA TAA TAA TAA TATA TTA TTA TTA TTT TAA TTA TAA
1 TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA
*
7841193 TAA TAA TAA TAA TAA T-A GAA TAAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA
7841238 TAA TAA
1 TAA TAA
7841244 ATAAAATGGA
Statistics
Matches: 83, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
2 1 0.01
3 77 0.93
4 5 0.06
ACGTcount: A:0.60, C:0.00, G:0.01, T:0.39
Consensus pattern (3 bp):
TAA
Found at i:7843015 original size:19 final size:19
Alignment explanation
Indices: 7842991--7843042 Score: 104
Period size: 19 Copynumber: 2.7 Consensus size: 19
7842981 GAATGTAATT
7842991 AGTGCATCGATGCATAAGG
1 AGTGCATCGATGCATAAGG
7843010 AGTGCATCGATGCATAAGG
1 AGTGCATCGATGCATAAGG
7843029 AGTGCATCGATGCA
1 AGTGCATCGATGCA
7843043 ACCCCTTAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.31, C:0.17, G:0.31, T:0.21
Consensus pattern (19 bp):
AGTGCATCGATGCATAAGG
Found at i:7843086 original size:83 final size:83
Alignment explanation
Indices: 7842932--7843106 Score: 221
Period size: 83 Copynumber: 2.1 Consensus size: 83
7842922 TTCAGTGTGT
* * *
7842932 ATCGATGCACAGGAAGTGCATCGATGCACCCATTAAAAATGGAAACATCGAATGTAATTAGTGCA
1 ATCGATGCAAAGGAAGTGCATCGATGCACCCATTAAAAATGAAAACATCGAAGGTAATTAGTGCA
7842997 TCGATGCATAAGG-AGTGC
66 TCGATGCAT-AGGTAGTGC
* * *
7843015 ATCGATGCATAAGG-AGTGCATCGATGCAACCCCTT-AAAATGAAAACATCGAAGGTGATTTGTG
1 ATCGATGCA-AAGGAAGTGCATCGATGC-ACCCATTAAAAATGAAAACATCGAAGGTAATTAGTG
* * *
7843078 TATTGATGCATGGGTAGTGC
64 CATCGATGCATAGGTAGTGC
7843098 ATCGATGCA
1 ATCGATGCA
7843107 CTTCAAGGGA
Statistics
Matches: 80, Mismatches: 9, Indels: 6
0.84 0.09 0.06
Matches are distributed among these distances:
82 2 0.03
83 69 0.86
84 9 0.11
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.24
Consensus pattern (83 bp):
ATCGATGCAAAGGAAGTGCATCGATGCACCCATTAAAAATGAAAACATCGAAGGTAATTAGTGCA
TCGATGCATAGGTAGTGC
Found at i:7843974 original size:2 final size:2
Alignment explanation
Indices: 7843969--7844001 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
7843959 AAACAGGTGA
7843969 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7844002 ATAAGACATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7844427 original size:23 final size:23
Alignment explanation
Indices: 7844392--7844482 Score: 119
Period size: 23 Copynumber: 4.0 Consensus size: 23
7844382 AACCTTATAT
*
7844392 GGCACTTCAGTGCATTTCTACGC
1 GGCACTTCGGTGCATTTCTACGC
*
7844415 GGCAATTCGGTGCATTTCTACGC
1 GGCACTTCGGTGCATTTCTACGC
* * * *
7844438 GGCACTACGGTGCAATTCTATGT
1 GGCACTTCGGTGCATTTCTACGC
*
7844461 GGCACTTCGGTGCATTTATACG
1 GGCACTTCGGTGCATTTCTACG
7844483 AGCTGTGGTG
Statistics
Matches: 57, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 57 1.00
ACGTcount: A:0.19, C:0.25, G:0.25, T:0.31
Consensus pattern (23 bp):
GGCACTTCGGTGCATTTCTACGC
Found at i:7854249 original size:12 final size:12
Alignment explanation
Indices: 7854222--7854267 Score: 58
Period size: 12 Copynumber: 3.9 Consensus size: 12
7854212 CGATTCTTGG
7854222 CCCAATA-CCGA
1 CCCAATACCCGA
*
7854233 CCCAATACCCAA
1 CCCAATACCCGA
* *
7854245 CCCAATACTCGG
1 CCCAATACCCGA
7854257 CCCAATACCCG
1 CCCAATACCCG
7854268 TTTAAATAAC
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
11 7 0.24
12 22 0.76
ACGTcount: A:0.33, C:0.48, G:0.09, T:0.11
Consensus pattern (12 bp):
CCCAATACCCGA
Found at i:7854264 original size:24 final size:23
Alignment explanation
Indices: 7854222--7854266 Score: 72
Period size: 24 Copynumber: 1.9 Consensus size: 23
7854212 CGATTCTTGG
7854222 CCCAATACCGACCCAATACCCAA
1 CCCAATACCGACCCAATACCCAA
*
7854245 CCCAATACTCGGCCCAATACCC
1 CCCAATAC-CGACCCAATACCC
7854267 GTTTAAATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 8 0.40
24 12 0.60
ACGTcount: A:0.33, C:0.49, G:0.07, T:0.11
Consensus pattern (23 bp):
CCCAATACCGACCCAATACCCAA
Found at i:7854637 original size:24 final size:24
Alignment explanation
Indices: 7854608--7854686 Score: 85
Period size: 24 Copynumber: 3.5 Consensus size: 24
7854598 ATCATATAAT
7854608 GATCATACAAAGAAAATATTTAAA
1 GATCATACAAAGAAAATATTTAAA
* * *
7854632 GTTCAT-C--CGAAAA-ACTTAAA
1 GATCATACAAAGAAAATATTTAAA
7854652 GATCATACAAAGAAAATATTTAAA
1 GATCATACAAAGAAAATATTTAAA
* *
7854676 GCTCATCCAAA
1 GATCATACAAA
7854687 AAACTTGAAT
Statistics
Matches: 43, Mismatches: 8, Indels: 8
0.73 0.14 0.14
Matches are distributed among these distances:
20 11 0.26
21 6 0.14
23 6 0.14
24 20 0.47
ACGTcount: A:0.52, C:0.15, G:0.09, T:0.24
Consensus pattern (24 bp):
GATCATACAAAGAAAATATTTAAA
Found at i:7854671 original size:44 final size:44
Alignment explanation
Indices: 7854608--7854692 Score: 152
Period size: 44 Copynumber: 1.9 Consensus size: 44
7854598 ATCATATAAT
* *
7854608 GATCATACAAAGAAAATATTTAAAGTTCATCCGAAAAACTTAAA
1 GATCATACAAAGAAAATATTTAAAGCTCATCCAAAAAACTTAAA
7854652 GATCATACAAAGAAAATATTTAAAGCTCATCCAAAAAACTT
1 GATCATACAAAGAAAATATTTAAAGCTCATCCAAAAAACTT
7854693 GAATAAAATA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.52, C:0.15, G:0.08, T:0.25
Consensus pattern (44 bp):
GATCATACAAAGAAAATATTTAAAGCTCATCCAAAAAACTTAAA
Found at i:7855048 original size:23 final size:23
Alignment explanation
Indices: 7855014--7855074 Score: 65
Period size: 23 Copynumber: 2.7 Consensus size: 23
7855004 TATTTATTTT
*
7855014 TTTAATAA-TTTAAT-TTTGTACC
1 TTTAA-AATTTTAATATTGGTACC
*
7855036 TCTTAAAATTTT-ATATTGGTATC
1 T-TTAAAATTTTAATATTGGTACC
7855059 TTTAAAATTTTAATAT
1 TTTAAAATTTTAATAT
7855075 ATTTTTTCCT
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
22 15 0.45
23 18 0.55
ACGTcount: A:0.34, C:0.07, G:0.05, T:0.54
Consensus pattern (23 bp):
TTTAAAATTTTAATATTGGTACC
Found at i:7855354 original size:65 final size:65
Alignment explanation
Indices: 7855158--7855346 Score: 315
Period size: 65 Copynumber: 2.9 Consensus size: 65
7855148 ACATCTTAAG
*
7855158 AAAGAAGAGTGTCAATTGAAAACTTTTAACCACATGATCTAAAGATTATTGACTCATATAATATA
1 AAAGAAGAGTGTCAATTGAAAACTTTTAACCACATGATCTAAAGATTATTGACTCATATAATAGA
* * * *
7855223 AAAGAAGAGTGTCAATTAAAAAATTTTAACCAAATGATCTAAAAATTATTGACTCATATAATAGA
1 AAAGAAGAGTGTCAATTGAAAACTTTTAACCACATGATCTAAAGATTATTGACTCATATAATAGA
* *
7855288 AAAGAAGAGTGTCAATTGAAAACTTTTAACCACATGATCTAATGATTATTAACTCATAT
1 AAAGAAGAGTGTCAATTGAAAACTTTTAACCACATGATCTAAAGATTATTGACTCATAT
7855347 TGAAGAAACC
Statistics
Matches: 113, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
65 113 1.00
ACGTcount: A:0.46, C:0.12, G:0.12, T:0.31
Consensus pattern (65 bp):
AAAGAAGAGTGTCAATTGAAAACTTTTAACCACATGATCTAAAGATTATTGACTCATATAATAGA
Found at i:7856753 original size:3 final size:3
Alignment explanation
Indices: 7856747--7856778 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
7856737 TCTTTTGCAT
7856747 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
7856779 TATATATATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:7861726 original size:15 final size:15
Alignment explanation
Indices: 7861706--7861735 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7861696 GAAATAGTTT
7861706 GACGAAAATGCCCAC
1 GACGAAAATGCCCAC
*
7861721 GACGAAAATTCCCAC
1 GACGAAAATGCCCAC
7861736 TGTGAATATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.33, G:0.17, T:0.10
Consensus pattern (15 bp):
GACGAAAATGCCCAC
Found at i:7867480 original size:8 final size:8
Alignment explanation
Indices: 7867463--7867500 Score: 62
Period size: 8 Copynumber: 5.0 Consensus size: 8
7867453 GCCCTAAATT
7867463 GAAAAA-A
1 GAAAAAGA
7867470 GAAAAAGA
1 GAAAAAGA
7867478 GAAAAAGA
1 GAAAAAGA
7867486 GAAAAAGA
1 GAAAAAGA
7867494 -AAAAAGA
1 GAAAAAGA
7867501 AAAGAAAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
7 13 0.43
8 17 0.57
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (8 bp):
GAAAAAGA
Found at i:7867484 original size:14 final size:14
Alignment explanation
Indices: 7867465--7867509 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
7867455 CCTAAATTGA
7867465 AAAAAGA-AAAAGAG
1 AAAAAGAGAAAA-AG
7867479 AAAAAGAGAAAAAG
1 AAAAAGAGAAAAAG
7867493 AAAAA-AG-AAAAG
1 AAAAAGAGAAAAAG
7867505 AAAAA
1 AAAAA
7867510 TAAGATGGGT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
12 10 0.33
13 2 0.07
14 14 0.47
15 4 0.13
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (14 bp):
AAAAAGAGAAAAAG
Found at i:7867488 original size:16 final size:16
Alignment explanation
Indices: 7867463--7867500 Score: 62
Period size: 15 Copynumber: 2.5 Consensus size: 16
7867453 GCCCTAAATT
7867463 GAAAAA-AGAAAAAGA
1 GAAAAAGAGAAAAAGA
7867478 GAAAAAGAGAAAAAGA
1 GAAAAAGAGAAAAAGA
7867494 -AAAAAGA
1 GAAAAAGA
7867501 AAAGAAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 13 0.59
16 9 0.41
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (16 bp):
GAAAAAGAGAAAAAGA
Found at i:7868807 original size:95 final size:95
Alignment explanation
Indices: 7868632--7868808 Score: 268
Period size: 95 Copynumber: 1.9 Consensus size: 95
7868622 ATTTCATAGC
* *
7868632 CAATTTTAACTTCACAACGAAGGATATTGGACCCAAGACAACACAAGCTCAACTTCACGACGAAG
1 CAATTTCAACTTCACAACGAAGGATATTAGACCCAAGACAACACAAGCTCAACTTCACGACGAAG
*
7868697 GGGCGTCTGATTGTCAAATTCATTCAGAGT
66 GGGCGTCTGACTGTCAAATTCATTCAGAGT
* * *
7868727 CAATTTCAACTTCACAGCGAAGGATATTAGACTCGAGACAACACAAGCTCAACTTCAC-AGCGAA
1 CAATTTCAACTTCACAACGAAGGATATTAGACCCAAGACAACACAAGCTCAACTTCACGA-CGAA
7868791 GGGGCGGT-TGACTGTCAA
65 GGGGC-GTCTGACTGTCAA
7868809 CAAACAATTG
Statistics
Matches: 74, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
94 1 0.01
95 71 0.96
96 2 0.03
ACGTcount: A:0.34, C:0.24, G:0.20, T:0.21
Consensus pattern (95 bp):
CAATTTCAACTTCACAACGAAGGATATTAGACCCAAGACAACACAAGCTCAACTTCACGACGAAG
GGGCGTCTGACTGTCAAATTCATTCAGAGT
Found at i:7870726 original size:2 final size:2
Alignment explanation
Indices: 7870715--7870781 Score: 127
Period size: 2 Copynumber: 34.0 Consensus size: 2
7870705 TACATTGCAT
7870715 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7870756 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
7870782 GTTAATATTA
Statistics
Matches: 64, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
1 1 0.02
2 63 0.98
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:7870872 original size:14 final size:14
Alignment explanation
Indices: 7870853--7870904 Score: 56
Period size: 14 Copynumber: 3.8 Consensus size: 14
7870843 ATTAGTATTA
7870853 TTATATATATATAT
1 TTATATATATATAT
7870867 TTATAT-T-TCATAT
1 TTATATATAT-ATAT
*
7870880 TT-TATATCCTATAT
1 TTATATAT-ATATAT
7870894 TTATATATATA
1 TTATATATATA
7870905 CGTATTTTTC
Statistics
Matches: 32, Mismatches: 1, Indels: 10
0.74 0.02 0.23
Matches are distributed among these distances:
12 4 0.12
13 8 0.25
14 14 0.44
15 6 0.19
ACGTcount: A:0.37, C:0.06, G:0.00, T:0.58
Consensus pattern (14 bp):
TTATATATATATAT
Found at i:7873831 original size:33 final size:33
Alignment explanation
Indices: 7873785--7873859 Score: 123
Period size: 33 Copynumber: 2.3 Consensus size: 33
7873775 CGATGATGAA
7873785 GGCGGCGAAGAAATCGATTTTCTAGCCGGTTTC
1 GGCGGCGAAGAAATCGATTTTCTAGCCGGTTTC
* *
7873818 GGCGGCGAGGAAATCGATTTTCTGGCCGGTTTC
1 GGCGGCGAAGAAATCGATTTTCTAGCCGGTTTC
*
7873851 AGCGGCGAA
1 GGCGGCGAA
7873860 AGGAAGACTC
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.20, C:0.21, G:0.35, T:0.24
Consensus pattern (33 bp):
GGCGGCGAAGAAATCGATTTTCTAGCCGGTTTC
Found at i:7879281 original size:6 final size:7
Alignment explanation
Indices: 7879265--7879289 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
7879255 TTTTTTAAAA
7879265 TTTTCAT
1 TTTTCAT
7879272 TTTTCAT
1 TTTTCAT
7879279 TTTTCAT
1 TTTTCAT
7879286 TTTT
1 TTTT
7879290 GAAAGCTCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.76
Consensus pattern (7 bp):
TTTTCAT
Found at i:7882457 original size:32 final size:31
Alignment explanation
Indices: 7882412--7882654 Score: 225
Period size: 32 Copynumber: 8.5 Consensus size: 31
7882402 ATAAAATATG
7882412 GATTGATTTATTTTAAATAATTTATTAGTAT
1 GATTGATTTATTTTAAATAATTTATTAGTAT
*
7882443 AGATTTATTTATTTT-AA-AA--TA-T-G---
1 -GATTGATTTATTTTAAATAATTTATTAGTAT
7882466 GATTGATTTATTTTAAATAATTTATTAGTAT
1 GATTGATTTATTTTAAATAATTTATTAGTAT
7882497 GGATTGATTTATTTT-AA-AA--TA-T-G---
1 -GATTGATTTATTTTAAATAATTTATTAGTAT
7882520 GATTGATTTATTTTAAATAATTTATTAGTAT
1 GATTGATTTATTTTAAATAATTTATTAGTAT
7882551 CGATTGATTTATTTTAAATAATTTATTAGTAT
1 -GATTGATTTATTTTAAATAATTTATTAGTAT
7882583 AGATTGATTTATTTT-AA-AA--TA-T-G---
1 -GATTGATTTATTTTAAATAATTTATTAGTAT
* *
7882606 GATTGATTAATTTTAAATAATTTATTAATAT
1 GATTGATTTATTTTAAATAATTTATTAGTAT
7882637 GGATTGATTTATTTTAAA
1 -GATTGATTTATTTTAAA
7882655 ATATGATTGA
Statistics
Matches: 175, Mismatches: 6, Indels: 60
0.73 0.02 0.25
Matches are distributed among these distances:
22 40 0.23
23 6 0.03
24 6 0.03
26 9 0.05
27 6 0.03
28 8 0.05
30 6 0.03
31 6 0.03
32 88 0.50
ACGTcount: A:0.37, C:0.00, G:0.11, T:0.52
Consensus pattern (31 bp):
GATTGATTTATTTTAAATAATTTATTAGTAT
Found at i:7882461 original size:54 final size:54
Alignment explanation
Indices: 7882395--7882970 Score: 441
Period size: 54 Copynumber: 10.5 Consensus size: 54
7882385 TTTTAAAAGA
* *
7882395 ATTTATTATAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATAGATTT
1 ATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTT
*
7882449 ATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTT
* *
7882503 ATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATCGATTG
1 ATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTT
** **
7882557 ATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAA-ATATGGATT-G-ATTAATTT
1 ATTTATTTT-AA-AA--TA-T-G----GATTGATTTATTTTAAATA-ATTTATTAGTATGGA-TT
7882619 T
54 T
** * * *
7882620 AAATAATTTATTAATATGGATTGATTTATTTT-AA-AA--TA-T-G-ATTGATTT
1 ATTTATTTTA-AAATATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTT
* *** *
7882668 A-TTATTGTAGTTGTATGGATTGATTTATTTTAAATAATTTATTATTATGGATTT
1 ATTTATTTTA-AAATATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTT
*
7882722 ATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTT
* * * * *
7882776 ATTTATTTTAAAATATGAATTGATTTATTATT--GT-AGTTA-TATGGATTGATTT
1 ATTTATTTTAAAATATGGATTGATTTATT-TTAAATAATTTATTA-GTATGGATTT
* * * ** **
7882828 ATTTTAATTAATTTATTAGTGTGGATTGATTTATTTTAAA-ATATGGATT-G-ATTTATTTT
1 A-TTT-A-T--TTTA-AAATATGGATTGATTTATTTTAAATA-ATTTATTAGTATGGA-TTT
** * * * * * *
7882887 AAATAATTTATTAGTATGAATTGATTTATTTTAAATAATTTATTTGTATGGATTG
1 ATTTATTTTA-AAATATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTT
7882942 ATTTATTTTAAAATATGGATTGATTTATT
1 ATTTATTTTAAAATATGGATTGATTTATT
7882971 ATTGTAGTTG
Statistics
Matches: 424, Mismatches: 60, Indels: 76
0.76 0.11 0.14
Matches are distributed among these distances:
47 24 0.06
48 6 0.01
49 8 0.02
50 1 0.00
51 4 0.01
52 14 0.03
53 7 0.02
54 251 0.59
55 23 0.05
56 5 0.01
57 7 0.02
58 23 0.05
59 7 0.02
60 5 0.01
61 1 0.00
62 6 0.01
63 10 0.02
64 22 0.05
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (54 bp):
ATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTT
Found at i:7882519 original size:22 final size:22
Alignment explanation
Indices: 7882494--7882536 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
7882484 AATTTATTAG
7882494 TATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAAA
7882516 TATGGATTGATTTATTTTAAA
1 TATGGATTGATTTATTTTAAA
7882537 TAATTTATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (22 bp):
TATGGATTGATTTATTTTAAAA
Found at i:7882594 original size:18 final size:18
Alignment explanation
Indices: 7882539--7882595 Score: 59
Period size: 18 Copynumber: 3.4 Consensus size: 18
7882529 ATTTTAAATA
*
7882539 ATTTATTAGTATCGATTG
1 ATTTATTAGTATAGATTG
* *
7882557 ATTTATT--T-TA-AATA
1 ATTTATTAGTATAGATTG
7882571 ATTTATTAGTATAGATTG
1 ATTTATTAGTATAGATTG
7882589 ATTTATT
1 ATTTATT
7882596 TTAAAATATG
Statistics
Matches: 30, Mismatches: 5, Indels: 8
0.70 0.12 0.19
Matches are distributed among these distances:
14 9 0.30
15 1 0.03
16 2 0.07
17 2 0.07
18 16 0.53
ACGTcount: A:0.33, C:0.02, G:0.11, T:0.54
Consensus pattern (18 bp):
ATTTATTAGTATAGATTG
Found at i:7882717 original size:32 final size:32
Alignment explanation
Indices: 7882681--7882953 Score: 148
Period size: 32 Copynumber: 8.7 Consensus size: 32
7882671 ATTGTAGTTG
7882681 TATGGATTGATTTATTTTAAATAATTTATTAT
1 TATGGATTGATTTATTTTAAATAATTTATTAT
*
7882713 TATGGATTTATTTA-TTT---TAA---A--A-
1 TATGGATTGATTTATTTTAAATAATTTATTAT
*
7882735 TATGGATTGATTTATTTTAAATAATTTATTAG
1 TATGGATTGATTTATTTTAAATAATTTATTAT
**
7882767 TATGGATTGATTTATTTTAAA-ATATGAATTGATT
1 TATGGATTGATTTATTTTAAATA-ATTTATT-A-T
* * * ** * *
7882801 TAT-TATTGTAGTTATATGGATTGATTTATT-T
1 TATGGATTG-ATTTATTTTAAATAATTTATTAT
* * * * *
7882832 TA---ATTAATTTATTAGTGTGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATT--T-T-AAATAATTTA--TT--AT
*
7882869 TATGGATTGATTTATTTTAAATAATTTATTAG
1 TATGGATTGATTTATTTTAAATAATTTATTAT
*
7882901 TATGAATTGATTTATTTTAAATAATTTATT-T
1 TATGGATTGATTTATTTTAAATAATTTATTAT
7882932 GTATGGATTGATTTATTTTAAA
1 -TATGGATTGATTTATTTTAAA
7882954 ATATGGATTG
Statistics
Matches: 186, Mismatches: 27, Indels: 56
0.69 0.10 0.21
Matches are distributed among these distances:
22 13 0.07
23 4 0.02
25 1 0.01
26 3 0.02
28 8 0.04
29 4 0.02
30 1 0.01
31 8 0.04
32 99 0.53
33 5 0.03
34 19 0.10
36 7 0.04
37 3 0.02
38 1 0.01
40 10 0.05
ACGTcount: A:0.34, C:0.00, G:0.12, T:0.54
Consensus pattern (32 bp):
TATGGATTGATTTATTTTAAATAATTTATTAT
Found at i:7882729 original size:22 final size:22
Alignment explanation
Indices: 7882713--7882755 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
7882703 AATTTATTAT
*
7882713 TATGGATTTATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAAA
7882735 TATGGATTGATTTATTTTAAA
1 TATGGATTGATTTATTTTAAA
7882756 TAATTTATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (22 bp):
TATGGATTGATTTATTTTAAAA
Found at i:7882792 original size:22 final size:22
Alignment explanation
Indices: 7882767--7882834 Score: 73
Period size: 26 Copynumber: 2.9 Consensus size: 22
7882757 AATTTATTAG
7882767 TATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAAA
* **
7882789 TATGAATTGATTTATTATTGTAGTTA
1 TATGGATTGATTTA-T-TT-TA-AAA
7882815 TATGGATTGATTTATTTTAA
1 TATGGATTGATTTATTTTAA
7882835 TTAATTTATT
Statistics
Matches: 37, Mismatches: 5, Indels: 8
0.74 0.10 0.16
Matches are distributed among these distances:
22 13 0.35
23 3 0.08
24 4 0.11
25 3 0.08
26 14 0.38
ACGTcount: A:0.32, C:0.00, G:0.15, T:0.53
Consensus pattern (22 bp):
TATGGATTGATTTATTTTAAAA
Found at i:7882818 original size:80 final size:80
Alignment explanation
Indices: 7882734--7883050 Score: 501
Period size: 80 Copynumber: 3.9 Consensus size: 80
7882724 TTATTTTAAA
*
7882734 ATATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGAATTGA
1 ATATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGA
7882799 TTTATTATTGTAGTT
66 TTTATTATTGTAGTT
* *
7882814 ATATGGATTGATTTATTTTAATTAATTTATTAGTGTGGATTGATTTATTTTAAAATATGGATTGA
1 ATATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGA
*
7882879 TTTATTTTAAATAATTTA-TT
66 TTTA--TT--AT--TGTAGTT
* *
7882899 AGTATGAATTGATTTATTTTAAATAATTTATTTGTATGGATTGATTTATTTTAAAATATGGATTG
1 A-TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
7882964 ATTTATTATTGTAGTT
65 ATTTATTATTGTAGTT
*
7882980 GTATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGA
1 ATATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGA
7883045 TTTATT
66 TTTATT
7883051 TTAAATAATT
Statistics
Matches: 217, Mismatches: 12, Indels: 16
0.89 0.05 0.07
Matches are distributed among these distances:
80 137 0.63
81 2 0.01
82 4 0.02
84 4 0.02
85 3 0.01
86 67 0.31
ACGTcount: A:0.33, C:0.00, G:0.14, T:0.53
Consensus pattern (80 bp):
ATATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGA
TTTATTATTGTAGTT
Found at i:7882897 original size:14 final size:14
Alignment explanation
Indices: 7882878--7882931 Score: 54
Period size: 14 Copynumber: 3.6 Consensus size: 14
7882868 ATATGGATTG
7882878 ATTTATTTTAAATA
1 ATTTATTTTAAATA
* *
7882892 ATTTATTAGTATGAATTG
1 ATTTATT--T-T-AAATA
7882910 ATTTATTTTAAATA
1 ATTTATTTTAAATA
7882924 ATTTATTT
1 ATTTATTT
7882932 GTATGGATTG
Statistics
Matches: 32, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
14 18 0.56
15 1 0.03
16 2 0.06
17 1 0.03
18 10 0.31
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.57
Consensus pattern (14 bp):
ATTTATTTTAAATA
Found at i:7882912 original size:166 final size:166
Alignment explanation
Indices: 7882735--7883065 Score: 608
Period size: 166 Copynumber: 2.0 Consensus size: 166
7882725 TATTTTAAAA
*
7882735 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGAATTGAT
1 TATGAATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGAATTGAT
* *
7882800 TTATTATTGTAGTTATATGGATTGATTTATTTTAATTAATTTATTAGTGTGGATTGATTTATTTT
66 TTATTATTGTAGTTATATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTT
7882865 AAAATATGGATTGATTTATTTTAAATAATTTATTAG
131 AAAATATGGATTGATTTATTTTAAATAATTTATTAG
* *
7882901 TATGAATTGATTTATTTTAAATAATTTATTTGTATGGATTGATTTATTTTAAAATATGGATTGAT
1 TATGAATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGAATTGAT
*
7882966 TTATTATTGTAGTTGTATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTT
66 TTATTATTGTAGTTATATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTT
7883031 AAAATATGGATTGATTTATTTTAAATAATTTATTA
131 AAAATATGGATTGATTTATTTTAAATAATTTATTA
7883066 TTGTAGTTGT
Statistics
Matches: 159, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
166 159 1.00
ACGTcount: A:0.33, C:0.00, G:0.14, T:0.53
Consensus pattern (166 bp):
TATGAATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGAATTGAT
TTATTATTGTAGTTATATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTT
AAAATATGGATTGATTTATTTTAAATAATTTATTAG
Found at i:7883038 original size:22 final size:22
Alignment explanation
Indices: 7883013--7883055 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
7883003 AATTTATTAG
7883013 TATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAAA
7883035 TATGGATTGATTTATTTTAAA
1 TATGGATTGATTTATTTTAAA
7883056 TAATTTATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (22 bp):
TATGGATTGATTTATTTTAAAA
Found at i:7883052 original size:54 final size:54
Alignment explanation
Indices: 7882814--7883065 Score: 278
Period size: 54 Copynumber: 4.6 Consensus size: 54
7882804 TATTGTAGTT
* *
7882814 ATATGGATTGATTTATTTTAATTAATTTATTAGTGTGGATTGATTTATTTTAAA
1 ATATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAA
*
7882868 ATATGGATTGATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTT-AA
1 ATATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAA
* * * ** * * * **
7882921 ATA---ATTTATTTGTATGGATTGATTTATTTTAAAATATGGATTGATTTATTATTGTAGTT
1 ATATGGATTGATTTATTTTAAATAATTTA--TT--AGTATGGATTGATTTA-T-TT-TA-AA
*
7882980 GTATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAA
1 ATATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAA
7883034 ATATGGATTGATTTATTTTAAATAATTTATTA
1 ATATGGATTGATTTATTTTAAATAATTTATTA
7883066 TTGTAGTTGT
Statistics
Matches: 160, Mismatches: 26, Indels: 24
0.76 0.12 0.11
Matches are distributed among these distances:
50 16 0.10
52 2 0.01
53 5 0.03
54 93 0.58
55 3 0.02
56 4 0.03
57 2 0.01
58 15 0.09
59 2 0.01
60 2 0.01
62 16 0.10
ACGTcount: A:0.33, C:0.00, G:0.13, T:0.53
Consensus pattern (54 bp):
ATATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAA
Found at i:7883115 original size:31 final size:31
Alignment explanation
Indices: 7883080--7883138 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
7883070 AGTTGTATAG
* *
7883080 ATTATTTAAATTTCAGTATTGTAAAACTAAA
1 ATTATTTAAATCTCAGTATTGCAAAACTAAA
7883111 ATTATTTAAATCTCAGTATTGCAAAACT
1 ATTATTTAAATCTCAGTATTGCAAAACT
7883139 CTTTTAAGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.42, C:0.10, G:0.07, T:0.41
Consensus pattern (31 bp):
ATTATTTAAATCTCAGTATTGCAAAACTAAA
Found at i:7883218 original size:25 final size:25
Alignment explanation
Indices: 7883184--7883241 Score: 98
Period size: 25 Copynumber: 2.3 Consensus size: 25
7883174 AGTTCATTTT
7883184 AGCAGTCTGCAGACGTTAAACAACA
1 AGCAGTCTGCAGACGTTAAACAACA
*
7883209 AGCAGTCTGCAGACGTTAAATAACA
1 AGCAGTCTGCAGACGTTAAACAACA
*
7883234 AACAGTCT
1 AGCAGTCT
7883242 TCTTCTTGCA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.40, C:0.22, G:0.19, T:0.19
Consensus pattern (25 bp):
AGCAGTCTGCAGACGTTAAACAACA
Found at i:7883638 original size:2 final size:2
Alignment explanation
Indices: 7883633--7883660 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
7883623 GTTTAAGTTT
7883633 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7883661 ATAAAATTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7883751 original size:3 final size:3
Alignment explanation
Indices: 7883743--7883774 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
7883733 CACCTAAATG
7883743 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
7883775 GTTAGACATC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:7884760 original size:2 final size:2
Alignment explanation
Indices: 7884755--7884784 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
7884745 TTTATTTTTG
7884755 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7884785 TAAACATTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7885787 original size:17 final size:18
Alignment explanation
Indices: 7885754--7885790 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
7885744 TAATTGTTAG
7885754 TTATTATAAAATATATTT
1 TTATTATAAAATATATTT
*
7885772 TTATTAT-AATTATATTT
1 TTATTATAAAATATATTT
7885789 TT
1 TT
7885791 CATATTTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (18 bp):
TTATTATAAAATATATTT
Found at i:7886340 original size:20 final size:20
Alignment explanation
Indices: 7886315--7886355 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
7886305 ATGCATGTTC
7886315 CTAACTCACTCAACATATTT
1 CTAACTCACTCAACATATTT
7886335 CTAACTCACTCAACATATTT
1 CTAACTCACTCAACATATTT
7886355 C
1 C
7886356 ATATTGTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.34, C:0.32, G:0.00, T:0.34
Consensus pattern (20 bp):
CTAACTCACTCAACATATTT
Found at i:7888950 original size:30 final size:30
Alignment explanation
Indices: 7888914--7888984 Score: 108
Period size: 30 Copynumber: 2.4 Consensus size: 30
7888904 CAACTTGTGA
*
7888914 TGATGATGGTGCTTGTGATGTTGCAG-CTT
1 TGATGATGGTGCGTGTGATGTTGCAGCCTT
*
7888943 GTGATGATGGTGCGTGTGATGTTGTAGCCTT
1 -TGATGATGGTGCGTGTGATGTTGCAGCCTT
7888974 TGATGATGGTG
1 TGATGATGGTG
7888985 TAATTGTTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
30 35 0.92
31 3 0.08
ACGTcount: A:0.14, C:0.08, G:0.38, T:0.39
Consensus pattern (30 bp):
TGATGATGGTGCGTGTGATGTTGCAGCCTT
Found at i:7888960 original size:15 final size:15
Alignment explanation
Indices: 7888914--7888984 Score: 65
Period size: 15 Copynumber: 4.7 Consensus size: 15
7888904 CAACTTGTGA
7888914 TGATGATGGTGCTTG
1 TGATGATGGTGCTTG
* **
7888929 TGATGTTGCAGCTTG
1 TGATGATGGTGCTTG
*
7888944 TGATGATGGTGCGTG
1 TGATGATGGTGCTTG
*
7888959 TGATG-TTGTAGCCTT-
1 TGATGATGGT-G-CTTG
7888974 TGATGATGGTG
1 TGATGATGGTG
7888985 TAATTGTTTT
Statistics
Matches: 43, Mismatches: 10, Indels: 6
0.73 0.17 0.10
Matches are distributed among these distances:
14 3 0.07
15 35 0.81
16 5 0.12
ACGTcount: A:0.14, C:0.08, G:0.38, T:0.39
Consensus pattern (15 bp):
TGATGATGGTGCTTG
Found at i:7892067 original size:64 final size:65
Alignment explanation
Indices: 7891915--7892074 Score: 236
Period size: 65 Copynumber: 2.5 Consensus size: 65
7891905 GAATAAATTG
* * *
7891915 AACATCGAATGCATTTTATGCATTGATGCACATACCATACATCGGTGCACTCAGGTTTTTATGAA
1 AACATCGAATGCATTTTATGCATCGATGCACATACCATACATCGATGCACTCAGGTATTTATGAA
* *
7891980 AACATCGAATGCATTTTATGCATCGATGCATA-AGCCATGCATCGATGCACTCAGGCTATTT-T-
1 AACATCGAATGCATTTTATGCATCGATGCACATA-CCATACATCGATGCACTCAGG-TATTTATG
7892042 AA
64 AA
7892044 AACATCGAATGCATTTTATGCATCGATGCAC
1 AACATCGAATGCATTTTATGCATCGATGCAC
7892075 CCTTAGTTCA
Statistics
Matches: 87, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
64 33 0.38
65 50 0.57
66 4 0.05
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (65 bp):
AACATCGAATGCATTTTATGCATCGATGCACATACCATACATCGATGCACTCAGGTATTTATGAA
Found at i:7894604 original size:23 final size:24
Alignment explanation
Indices: 7894565--7894623 Score: 75
Period size: 23 Copynumber: 2.5 Consensus size: 24
7894555 ATAGAGTGTT
*
7894565 TTTATAAAAAAAACCCTAAAAGTA
1 TTTACAAAAAAAACCCTAAAAGTA
* *
7894589 TTT-CAAAAAAATCCCTTAAAGTA
1 TTTACAAAAAAAACCCTAAAAGTA
*
7894612 TTTATAAAAAAA
1 TTTACAAAAAAA
7894624 CTAAAAAAAG
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
23 20 0.67
24 10 0.33
ACGTcount: A:0.56, C:0.12, G:0.03, T:0.29
Consensus pattern (24 bp):
TTTACAAAAAAAACCCTAAAAGTA
Found at i:7895757 original size:14 final size:15
Alignment explanation
Indices: 7895738--7895767 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
7895728 AGTGGACTAT
7895738 CTTCATTTTT-GGGC
1 CTTCATTTTTCGGGC
7895752 CTTCATTTTTCGGGC
1 CTTCATTTTTCGGGC
7895767 C
1 C
7895768 ATCTGTTGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.07, C:0.27, G:0.20, T:0.47
Consensus pattern (15 bp):
CTTCATTTTTCGGGC
Found at i:7914147 original size:216 final size:216
Alignment explanation
Indices: 7913773--7914196 Score: 848
Period size: 216 Copynumber: 2.0 Consensus size: 216
7913763 TACATATAGT
7913773 AATATATTATAAAAAATTAAAAAATATTAAATTTTCATTTTATTGATTGATTATTCATTTCAATA
1 AATATATTATAAAAAATTAAAAAATATTAAATTTTCATTTTATTGATTGATTATTCATTTCAATA
7913838 AATTATAAAAAGAGAAAATAACCTCATTGACAAAAAATGCATTATAATATACGATTTTAACCAAC
66 AATTATAAAAAGAGAAAATAACCTCATTGACAAAAAATGCATTATAATATACGATTTTAACCAAC
7913903 TTTTTTTGGATTTGCCAAAATGACCAACTAAATCGTAATGCAATCGATAATTCGCAACGCGATCT
131 TTTTTTTGGATTTGCCAAAATGACCAACTAAATCGTAATGCAATCGATAATTCGCAACGCGATCT
7913968 CCGGTATCGCAAACCAAACAG
196 CCGGTATCGCAAACCAAACAG
7913989 AATATATTATAAAAAATTAAAAAATATTAAATTTTCATTTTATTGATTGATTATTCATTTCAATA
1 AATATATTATAAAAAATTAAAAAATATTAAATTTTCATTTTATTGATTGATTATTCATTTCAATA
7914054 AATTATAAAAAGAGAAAATAACCTCATTGACAAAAAATGCATTATAATATACGATTTTAACCAAC
66 AATTATAAAAAGAGAAAATAACCTCATTGACAAAAAATGCATTATAATATACGATTTTAACCAAC
7914119 TTTTTTTGGATTTGCCAAAATGACCAACTAAATCGTAATGCAATCGATAATTCGCAACGCGATCT
131 TTTTTTTGGATTTGCCAAAATGACCAACTAAATCGTAATGCAATCGATAATTCGCAACGCGATCT
7914184 CCGGTATCGCAAA
196 CCGGTATCGCAAA
7914197 TCAGTTTCCA
Statistics
Matches: 208, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
216 208 1.00
ACGTcount: A:0.43, C:0.14, G:0.10, T:0.33
Consensus pattern (216 bp):
AATATATTATAAAAAATTAAAAAATATTAAATTTTCATTTTATTGATTGATTATTCATTTCAATA
AATTATAAAAAGAGAAAATAACCTCATTGACAAAAAATGCATTATAATATACGATTTTAACCAAC
TTTTTTTGGATTTGCCAAAATGACCAACTAAATCGTAATGCAATCGATAATTCGCAACGCGATCT
CCGGTATCGCAAACCAAACAG
Found at i:7914308 original size:42 final size:42
Alignment explanation
Indices: 7914256--7914455 Score: 278
Period size: 42 Copynumber: 4.7 Consensus size: 42
7914246 TATATTCGCA
*
7914256 TTGCGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAGTTCG
1 TTGCGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAATTCG
*
7914298 TTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATTCG
1 TTGCGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAATTCG
* *
7914340 TTGCGATTTATTCCAAGTTCGCGTTGCGATTTATTCCAAATTTG
1 TTGCGA--TAGTCCAAGTTCGCGTTGCGATTTATTCCAAATTCG
*
7914384 TTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATTCGCG
1 TTGCGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAATT--CG
*
7914428 TTGCGATTTATTCCAAGTT--CGTTGCGAT
1 TTGCGA--TAGTCCAAGTTCGCGTTGCGAT
7914456 AGTCCAAAAT
Statistics
Matches: 142, Mismatches: 10, Indels: 10
0.88 0.06 0.06
Matches are distributed among these distances:
42 78 0.55
44 55 0.39
46 9 0.06
ACGTcount: A:0.20, C:0.20, G:0.23, T:0.38
Consensus pattern (42 bp):
TTGCGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAATTCG
Found at i:7914356 original size:86 final size:87
Alignment explanation
Indices: 7914265--7914455 Score: 334
Period size: 86 Copynumber: 2.2 Consensus size: 87
7914255 ATTGCGATAG
*
7914265 TCCAAGTTCGCGTTGCGATTTATTCCAAGTTCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTAT
1 TCCAAGTTCGCGTTGCGATTTATTCCAAATTCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTAT
7914330 TCCAAATT-CGTTGCGATTTAT
66 TCCAAATTCCGTTGCGATTTAT
*
7914351 TCCAAGTTCGCGTTGCGATTTATTCCAAATTTGTTGCGATAGTCGAAGTTCGCGTTGCGATTTAT
1 TCCAAGTTCGCGTTGCGATTTATTCCAAATTCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTAT
7914416 TCCAAATTCGCGTTGCGATTTAT
66 TCCAAATTC-CGTTGCGATTTAT
7914439 TCCAAGTT--CGTTGCGAT
1 TCCAAGTTCGCGTTGCGAT
7914456 AGTCCAAAAT
Statistics
Matches: 101, Mismatches: 2, Indels: 4
0.94 0.02 0.04
Matches are distributed among these distances:
86 80 0.79
88 21 0.21
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.38
Consensus pattern (87 bp):
TCCAAGTTCGCGTTGCGATTTATTCCAAATTCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTAT
TCCAAATTCCGTTGCGATTTAT
Found at i:7914390 original size:65 final size:65
Alignment explanation
Indices: 7914256--7914463 Score: 234
Period size: 65 Copynumber: 3.2 Consensus size: 65
7914246 TATATTCGCA
* * *
7914256 TTGCGA-TAGTCCAAGTTCGCGTTGCGATTTATTCCAAGTT--CGTTGCGA--TAGTCGAAGTTC
1 TTGCGATTAGTCCAAATTC-CGTTGCGATTTATTCCAAGTTCGCGTTGCGATTTATTCCAAGTT-
7914316 GCG
64 -CG
* * *
7914319 TTGCGATTTATTCCAAATT-CGTTGCGATTTATTCCAAGTTCGCGTTGCGATTTATTCCAAATTT
1 TTGCGA-TTAGTCCAAATTCCGTTGCGATTTATTCCAAGTTCGCGTTGCGATTTATTCCAAGTTC
7914383 G
65 G
* * *
7914384 TTGCGA-TAGTCGAAGTTCGCGTTGCGATTTATTCCAAATTCGCGTTGCGATTTATTCCAAGTTC
1 TTGCGATTAGTCCAAATTC-CGTTGCGATTTATTCCAAGTTCGCGTTGCGATTTATTCCAAGTTC
7914448 G
65 G
7914449 TTGCGA-TAGTCCAAA
1 TTGCGATTAGTCCAAA
7914464 ATCGCAACGA
Statistics
Matches: 123, Mismatches: 14, Indels: 14
0.81 0.09 0.09
Matches are distributed among these distances:
63 35 0.28
65 80 0.65
67 8 0.07
ACGTcount: A:0.21, C:0.20, G:0.22, T:0.37
Consensus pattern (65 bp):
TTGCGATTAGTCCAAATTCCGTTGCGATTTATTCCAAGTTCGCGTTGCGATTTATTCCAAGTTCG
Found at i:7914559 original size:6 final size:6
Alignment explanation
Indices: 7914548--7914600 Score: 69
Period size: 6 Copynumber: 9.5 Consensus size: 6
7914538 GACACGTATT
*
7914548 ACCACG ACCACG ACCACG ACCACG ACCATG ACC-CG ACC-CG ACC-CG
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
7914593 ACC-CG ACC
1 ACCACG ACC
7914601 CGAGACATAC
Statistics
Matches: 45, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
5 19 0.42
6 26 0.58
ACGTcount: A:0.28, C:0.53, G:0.17, T:0.02
Consensus pattern (6 bp):
ACCACG
Found at i:7914587 original size:5 final size:5
Alignment explanation
Indices: 7914552--7914603 Score: 59
Period size: 5 Copynumber: 9.6 Consensus size: 5
7914542 CGTATTACCA
*
7914552 CGACC ACGACC ACGACC ACGACC ATGACC CGACC CGACC CGACC CGACC
1 CGACC -CGACC -CGACC -CGACC -CGACC CGACC CGACC CGACC CGACC
7914601 CGA
1 CGA
7914604 GACATACGGC
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
5 22 0.50
6 22 0.50
ACGTcount: A:0.27, C:0.52, G:0.19, T:0.02
Consensus pattern (5 bp):
CGACC
Found at i:7915242 original size:21 final size:21
Alignment explanation
Indices: 7915216--7915330 Score: 153
Period size: 21 Copynumber: 5.5 Consensus size: 21
7915206 TTTTAGACTA
7915216 TCGCATTGCGATAGTCCAAGT
1 TCGCATTGCGATAGTCCAAGT
* *
7915237 TCGCATTGCGAT-TTACATA-T
1 TCGCATTGCGATAGTCCA-AGT
*
7915257 TTGCATTGCGATAGTCCAAGT
1 TCGCATTGCGATAGTCCAAGT
7915278 TCGCATTGCGATAGTCCAAGT
1 TCGCATTGCGATAGTCCAAGT
**
7915299 TCGCATTGCGATAGTTGAAGT
1 TCGCATTGCGATAGTCCAAGT
*
7915320 TCGCGTTGCGA
1 TCGCATTGCGA
7915331 ATTTGGAAAC
Statistics
Matches: 82, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
20 16 0.20
21 66 0.80
ACGTcount: A:0.23, C:0.21, G:0.24, T:0.32
Consensus pattern (21 bp):
TCGCATTGCGATAGTCCAAGT
Found at i:7915263 original size:41 final size:42
Alignment explanation
Indices: 7915216--7915330 Score: 153
Period size: 41 Copynumber: 2.8 Consensus size: 42
7915206 TTTTAGACTA
*
7915216 TCGCATTGCGATAGTCCAAGTTCGCATTGCGAT-TTACATA-T
1 TCGCATTGCGATAGTCCAAGTTCGCATTGCGATAGTACA-AGT
* *
7915257 TTGCATTGCGATAGTCCAAGTTCGCATTGCGATAGTCCAAGT
1 TCGCATTGCGATAGTCCAAGTTCGCATTGCGATAGTACAAGT
** *
7915299 TCGCATTGCGATAGTTGAAGTTCGCGTTGCGA
1 TCGCATTGCGATAGTCCAAGTTCGCATTGCGA
7915331 ATTTGGAAAC
Statistics
Matches: 65, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
41 33 0.51
42 32 0.49
ACGTcount: A:0.23, C:0.21, G:0.24, T:0.32
Consensus pattern (42 bp):
TCGCATTGCGATAGTCCAAGTTCGCATTGCGATAGTACAAGT
Found at i:7915891 original size:37 final size:38
Alignment explanation
Indices: 7915807--7915895 Score: 137
Period size: 38 Copynumber: 2.4 Consensus size: 38
7915797 CCTAACCCCG
*
7915807 AACCCGACCCGACCTGACCCGAATATCACACTTAAAAA
1 AACCTGACCCGACCTGACCCGAATATCACACTTAAAAA
7915845 AACCTGACCCGA-CTCGACCCGAATATCACACTT-AAAA
1 AACCTGACCCGACCT-GACCCGAATATCACACTTAAAAA
*
7915882 AATCTGACCCGACC
1 AACCTGACCCGACC
7915896 CGAACAAAAT
Statistics
Matches: 47, Mismatches: 2, Indels: 4
0.89 0.04 0.08
Matches are distributed among these distances:
37 17 0.36
38 30 0.64
ACGTcount: A:0.37, C:0.37, G:0.11, T:0.15
Consensus pattern (38 bp):
AACCTGACCCGACCTGACCCGAATATCACACTTAAAAA
Found at i:7916143 original size:27 final size:28
Alignment explanation
Indices: 7916084--7916147 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
7916074 CCGACCCGAT
*
7916084 CCGACCCAAATATCACACTTAAAAAAAC
1 CCGACCCGAATATCACACTTAAAAAAAC
7916112 CCGACCCGAATATCACACTT-AAAAAAC
1 CCGACCCGAATATCACACTTAAAAAAAC
7916139 CCGACCCGA
1 CCGACCCGA
7916148 CCCGAACAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
27 16 0.46
28 19 0.54
ACGTcount: A:0.44, C:0.36, G:0.08, T:0.12
Consensus pattern (28 bp):
CCGACCCGAATATCACACTTAAAAAAAC
Found at i:7916326 original size:258 final size:258
Alignment explanation
Indices: 7915758--7916530 Score: 1096
Period size: 258 Copynumber: 2.9 Consensus size: 258
7915748 TATAAGGTAA
* * * *
7915758 AATTATATATTTTTTTCGGGTCAGTCCGGTTTTTTTCACCCTAACCCCGAACCCGACCCGACCTG
1 AATTATATA-TATTTTCGGGTCGGTCCAGTTTTTTTCACCCTAAACCCGAACCCGACCCGACC-G
* *
7915823 ACCCGAATATCACACTTAAAAAAACCTGACCCGACTCGACCCGAATATCACACTTAAAAAATCTG
64 ACCCGAATATCACACTTAAAAAAA-C--A--C--C-CGACCCGAATATCACACTTAAAAAACCCG
* *
7915888 ACCCGACCCGAACAAAATAAAGTTTCATCCGACCCGACCCGAAAATATGATTTAGAAAT---CTG
121 ACCCGACCCGAACAAAATAAAGTTTCATCCGACCCGACCCGAATATATGAATTAGAAATCCACTG
* * *
7915950 ACCCGACCCGACCTGAAATAATAAAAAAATATTTTTATTTAATAAAAACACTGACTTAATCCGAT
186 ACCCGACCCGACCTGAAATAATAAAAAATTATTTTTATTTAATAAAAACAGTGACTTAATCCGAC
7916015 CCGACTCG
251 CCGACTCG
*
7916023 AATTATATATATTTTCGAGTCGGTCCAGTTTTTTTCACCCTAAACCCGAACCCGACCCGATCCGA
1 AATTATATATATTTTCGGGTCGGTCCAGTTTTTTTCACCCTAAACCCGAACCCGACCCGA-CCGA
*
7916088 CCCAAATATCACACTT-AAAAAA-ACCCGACCCGAATATCACACTTAAAAAACCCGACCCGACCC
65 CCCGAATATCACACTTAAAAAAACACCCGACCCGAATATCACACTTAAAAAACCCGACCCGACCC
*
7916151 GAACAAAATAAAGTTTCATCCGACCCGACCTGAATATATGAATTAGAAATCCGACTCGACCCGAC
130 GAACAAAATAAAGTTTCATCCGACCCGACCCGAATATATGAATTAGAAATCC-ACT-GACCCGAC
*
7916216 CCGACCCGAAATAATAAAAAATTATTTTTATTTAAT-AAAACAGTGACTTAATCCGACCCGACTC
193 CCGACCTGAAATAATAAAAAATTATTTTTATTTAATAAAAACAGTGACTTAATCCGACCCGACTC
7916280 G
258 G
* *
7916281 AATTATATATATTTTCGGGTCGGTCCAGTTTTTTTCACCCTAAACCCGAATCCGACCCGACCCAA
1 AATTATATATATTTTCGGGTCGGTCCAGTTTTTTTCACCCTAAACCCGAACCCGACCCGA-CCGA
*
7916346 CTCGAATATCACACTTAAAAAAACCCGACCCGACTCGACTCGAATATCACACTTAAAAAACCCGA
65 CCCGAATATCACACTTAAAAAAA--C-ACCCGA--C--C-CGAATATCACACTTAAAAAACCCGA
* * *
7916411 TCTGAACCGAACAAAATAAAGTTTCATCCGACCCGACCCGAATATATGAATTAGAAATCCA---A
122 CCCGACCCGAACAAAATAAAGTTTCATCCGACCCGACCCGAATATATGAATTAGAAATCCACTGA
7916473 CCCGACCCGACCTGAAATAATAAAAAATTATTTTTATTTAATAAAAACAGTGACTTAA
187 CCCGACCCGACCTGAAATAATAAAAAATTATTTTTATTTAATAAAAACAGTGACTTAA
7916531 ACGATTCCCC
Statistics
Matches: 465, Mismatches: 26, Indels: 35
0.88 0.05 0.07
Matches are distributed among these distances:
254 83 0.18
255 1 0.00
257 1 0.00
258 104 0.22
259 49 0.11
263 54 0.12
264 78 0.17
265 12 0.03
267 2 0.00
268 81 0.17
ACGTcount: A:0.37, C:0.28, G:0.12, T:0.24
Consensus pattern (258 bp):
AATTATATATATTTTCGGGTCGGTCCAGTTTTTTTCACCCTAAACCCGAACCCGACCCGACCGAC
CCGAATATCACACTTAAAAAAACACCCGACCCGAATATCACACTTAAAAAACCCGACCCGACCCG
AACAAAATAAAGTTTCATCCGACCCGACCCGAATATATGAATTAGAAATCCACTGACCCGACCCG
ACCTGAAATAATAAAAAATTATTTTTATTTAATAAAAACAGTGACTTAATCCGACCCGACTCG
Found at i:7916387 original size:38 final size:37
Alignment explanation
Indices: 7916332--7916410 Score: 131
Period size: 38 Copynumber: 2.1 Consensus size: 37
7916322 AAACCCGAAT
7916332 CCGACCCGACCCAACTCGAATATCACACTTAAAAAAAC
1 CCGACCCGACCCAACTCGAATATCACACTT-AAAAAAC
* *
7916370 CCGACCCGACTCGACTCGAATATCACACTTAAAAAAC
1 CCGACCCGACCCAACTCGAATATCACACTTAAAAAAC
7916407 CCGA
1 CCGA
7916411 TCTGAACCGA
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
37 11 0.28
38 28 0.72
ACGTcount: A:0.39, C:0.37, G:0.10, T:0.14
Consensus pattern (37 bp):
CCGACCCGACCCAACTCGAATATCACACTTAAAAAAC
Found at i:7916756 original size:13 final size:13
Alignment explanation
Indices: 7916735--7916789 Score: 58
Period size: 13 Copynumber: 4.2 Consensus size: 13
7916725 AAGTTCGATA
*
7916735 AATTCAAATACTT
1 AATTGAAATACTT
7916748 AATTGAAATACTT
1 AATTGAAATACTT
* *
7916761 AATT-AACTCAACAT
1 AATTGAAAT--ACTT
7916775 AATTGAAATACTT
1 AATTGAAATACTT
7916788 AA
1 AA
7916790 ATACTTCCAA
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
12 3 0.09
13 21 0.62
14 7 0.21
15 3 0.09
ACGTcount: A:0.49, C:0.13, G:0.04, T:0.35
Consensus pattern (13 bp):
AATTGAAATACTT
Found at i:7916904 original size:32 final size:33
Alignment explanation
Indices: 7916775--7916906 Score: 230
Period size: 33 Copynumber: 4.0 Consensus size: 33
7916765 AACTCAACAT
* * *
7916775 AATTGAAATACTTAAATACTTCCAAGTTTGATA
1 AATTCAAATACTTAAAAACTTCCAAGTTCGATA
7916808 AATTCAAATACTTAAAAACTTCCAAGTTCGATA
1 AATTCAAATACTTAAAAACTTCCAAGTTCGATA
7916841 AATTCAAATACTTAAAAACTTCCAAGTTCGATA
1 AATTCAAATACTTAAAAACTTCCAAGTTCGATA
7916874 AATTCAAATACTTAAAAACTT-CAAGTTCGATA
1 AATTCAAATACTTAAAAACTTCCAAGTTCGATA
7916906 A
1 A
7916907 TTGAAACAAA
Statistics
Matches: 96, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
32 12 0.12
33 84 0.88
ACGTcount: A:0.45, C:0.16, G:0.07, T:0.32
Consensus pattern (33 bp):
AATTCAAATACTTAAAAACTTCCAAGTTCGATA
Found at i:7916925 original size:21 final size:21
Alignment explanation
Indices: 7916901--7916940 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
7916891 ACTTCAAGTT
7916901 CGATAATTGAAACAAAGTTTA
1 CGATAATTGAAACAAAGTTTA
*
7916922 CGATAATTGAAATAAAGTT
1 CGATAATTGAAACAAAGTT
7916941 ATAAAATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.47, C:0.07, G:0.15, T:0.30
Consensus pattern (21 bp):
CGATAATTGAAACAAAGTTTA
Found at i:7920931 original size:41 final size:41
Alignment explanation
Indices: 7920874--7920956 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
7920864 AAACCCCACA
7920874 TGCCTATACTATATAAAATTGTTCCTTTTCAATCATTATTT
1 TGCCTATACTATATAAAATTGTTCCTTTTCAATCATTATTT
7920915 TGCCTATACTATATAAAATTGTTCCTTTTCAATCATTATTT
1 TGCCTATACTATATAAAATTGTTCCTTTTCAATCATTATTT
7920956 T
1 T
7920957 CTAACATTTT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.29, C:0.17, G:0.05, T:0.49
Consensus pattern (41 bp):
TGCCTATACTATATAAAATTGTTCCTTTTCAATCATTATTT
Found at i:7921415 original size:123 final size:125
Alignment explanation
Indices: 7921190--7921440 Score: 488
Period size: 123 Copynumber: 2.0 Consensus size: 125
7921180 ATGCCGCACC
7921190 TAATTCCCCGACAAAAATTAGGTTAAAAACAATTAAAAGAACACCAAATAATTTCAATGATGAAC
1 TAATTCCCCGACAAAAATTAGGTTAAAAACAATTAAAAGAACACCAAATAATTTCAATGATGAAC
7921255 ATTAATGATAACGAGATGACTAGGACGAACGAAGATTT-TGTTAGGGAGGTAAAATTTTT
66 ATTAATGATAACGAGATGACTAGGACGAACGAAGATTTATGTTAGGGAGGTAAAATTTTT
7921314 TAATT-CCCGACAAAAATTAGGTTAAAAACAATTAAAAGAACACCAAATAATTTCAATGATGAAC
1 TAATTCCCCGACAAAAATTAGGTTAAAAACAATTAAAAGAACACCAAATAATTTCAATGATGAAC
7921378 ATTAATGATAACGAGATGACTAGGACGAACGAAGATTTATGTTAGGGAGGTAAAATTTTT
66 ATTAATGATAACGAGATGACTAGGACGAACGAAGATTTATGTTAGGGAGGTAAAATTTTT
7921438 TAA
1 TAA
7921441 AATTTTAGGA
Statistics
Matches: 126, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
123 97 0.77
124 29 0.23
ACGTcount: A:0.45, C:0.12, G:0.17, T:0.27
Consensus pattern (125 bp):
TAATTCCCCGACAAAAATTAGGTTAAAAACAATTAAAAGAACACCAAATAATTTCAATGATGAAC
ATTAATGATAACGAGATGACTAGGACGAACGAAGATTTATGTTAGGGAGGTAAAATTTTT
Found at i:7925146 original size:26 final size:27
Alignment explanation
Indices: 7925095--7925147 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
7925085 TATAATGATG
* *
7925095 AAAATGATAAAAATGTCAAGTCAATGA
1 AAAATGATAAAAATGTCAAATAAATGA
7925122 AAAATGATAAAACA-GT-AAATAAATGA
1 AAAATGATAAAA-ATGTCAAATAAATGA
7925148 TAGTTTGATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
26 8 0.35
27 14 0.61
28 1 0.04
ACGTcount: A:0.60, C:0.06, G:0.13, T:0.21
Consensus pattern (27 bp):
AAAATGATAAAAATGTCAAATAAATGA
Found at i:7927630 original size:27 final size:28
Alignment explanation
Indices: 7927501--7927678 Score: 129
Period size: 29 Copynumber: 6.1 Consensus size: 28
7927491 ACATTATAAG
*
7927501 TATATTATATGTATATATACTTTTATAC--
1 TATATTATA--TATATATACTTATATACTT
*
7927529 TATA-TA-ATTTATATACTTATATACTT
1 TATATTATATATATATACTTATATACTT
*
7927555 TTTATTATATACCT-TAATACTTTATATTTAATACTT
1 TATATTATATA--TAT-ATAC--T-TA--T-ATACTT
7927591 TATAGTT-TATATATATACTTATATACTT
1 TATA-TTATATATATATACTTATATACTT
7927619 TATATTATTATATATATACTTATATACTT
1 TATATTA-TATATATATACTTATATACTT
* *
7927648 TATATTAT-TATATACA-TATATATACTC
1 TATATTATATATATATACT-TATATACTT
7927675 TATA
1 TATA
7927679 CTAAAACTTT
Statistics
Matches: 125, Mismatches: 7, Indels: 37
0.74 0.04 0.22
Matches are distributed among these distances:
24 15 0.12
26 5 0.04
27 25 0.20
28 17 0.14
29 30 0.24
30 5 0.04
31 2 0.02
32 2 0.02
33 2 0.02
34 5 0.04
35 2 0.02
36 13 0.10
37 2 0.02
ACGTcount: A:0.37, C:0.08, G:0.01, T:0.53
Consensus pattern (28 bp):
TATATTATATATATATACTTATATACTT
Found at i:7927634 original size:21 final size:22
Alignment explanation
Indices: 7927571--7927644 Score: 75
Period size: 21 Copynumber: 3.5 Consensus size: 22
7927561 ATATACCTTA
* *
7927571 ATACTTTATATT-TAATACTTT
1 ATACTTTATATTATTATACTAT
*
7927592 ATAGTTTATA-TA-TATACTTAT
1 ATACTTTATATTATTATAC-TAT
7927613 ATACTTTATATTATTATA-TAT
1 ATACTTTATATTATTATACTAT
7927634 ATACTTATATA
1 ATACTT-TATA
7927645 CTTTATATTA
Statistics
Matches: 44, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
20 5 0.11
21 29 0.66
22 6 0.14
23 4 0.09
ACGTcount: A:0.38, C:0.07, G:0.01, T:0.54
Consensus pattern (22 bp):
ATACTTTATATTATTATACTAT
Found at i:7927635 original size:29 final size:29
Alignment explanation
Indices: 7927577--7927678 Score: 140
Period size: 29 Copynumber: 3.7 Consensus size: 29
7927567 CTTAATACTT
* *
7927577 TATATTTA-ATACTTTATAGT-TTATATA
1 TATACTTATATACTTTATATTATTATATA
7927604 TATACTTATATACTTTATATTATTATATA
1 TATACTTATATACTTTATATTATTATATA
7927633 TATACTTATATACTTTATATTATTATATA
1 TATACTTATATACTTTATATTATTATATA
* *
7927662 CATA--TATATACTCTATA
1 TATACTTATATACTTTATA
7927679 CTAAAACTTT
Statistics
Matches: 69, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
27 19 0.28
28 11 0.16
29 39 0.57
ACGTcount: A:0.38, C:0.08, G:0.01, T:0.53
Consensus pattern (29 bp):
TATACTTATATACTTTATATTATTATATA
Found at i:7927650 original size:21 final size:21
Alignment explanation
Indices: 7927610--7927652 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
7927600 TATATATACT
*
7927610 TATATACTTTATATTATTATA
1 TATATACTTTATACTATTATA
7927631 TATATACTTATATACT-TTATA
1 TATATACTT-TATACTATTATA
7927652 T
1 T
7927653 TATTATATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.56
Consensus pattern (21 bp):
TATATACTTTATACTATTATA
Found at i:7927667 original size:8 final size:8
Alignment explanation
Indices: 7927514--7927669 Score: 108
Period size: 8 Copynumber: 20.8 Consensus size: 8
7927504 ATTATATGTA
7927514 TATATACT
1 TATATACT
*
7927522 TTTATAC-
1 TATATACT
*
7927529 TATATAATT
1 TATAT-ACT
7927538 TATATACT
1 TATATACT
7927546 TATATACT
1 TATATACT
*
7927554 T-TTTA-T
1 TATATACT
7927560 TATATACCT
1 TATATA-CT
7927569 TA-ATACT
1 TATATACT
*
7927576 T-TATATT
1 TATATACT
7927583 TA-ATACT
1 TATATACT
*
7927590 T-TATAGT
1 TATATACT
7927597 T-TATA--
1 TATATACT
7927602 TATATACT
1 TATATACT
7927610 TATATACT
1 TATATACT
7927618 T-TATA-T
1 TATATACT
7927624 TAT-TA-T
1 TATATACT
7927630 ATATATACT
1 -TATATACT
7927639 TATATACTT
1 TATATAC-T
7927648 TATATTA-T
1 TATA-TACT
*
7927656 TATATACA
1 TATATACT
7927664 TATATA
1 TATATA
7927670 TACTCTATAC
Statistics
Matches: 120, Mismatches: 10, Indels: 36
0.72 0.06 0.22
Matches are distributed among these distances:
5 1 0.01
6 11 0.09
7 42 0.35
8 50 0.42
9 14 0.12
10 2 0.02
ACGTcount: A:0.37, C:0.08, G:0.01, T:0.54
Consensus pattern (8 bp):
TATATACT
Found at i:7927731 original size:7 final size:7
Alignment explanation
Indices: 7927693--7927881 Score: 53
Period size: 7 Copynumber: 26.0 Consensus size: 7
7927683 AACTTTATAT
7927693 ATATAAA
1 ATATAAA
*
7927700 CTATAAA
1 ATATAAA
* *
7927707 GTATTAGA
1 ATA-TAAA
* *
7927715 TTATATA
1 ATATAAA
7927722 ATATAAA
1 ATATAAA
7927729 ATATAAA
1 ATATAAA
7927736 ATATATAA
1 ATATA-AA
7927744 GTATATAAA
1 --ATATAAA
* *
7927753 TTATATA
1 ATATAAA
*
7927760 GTATAAA
1 ATATAAA
7927767 AGTATATATA
1 A-TATA-A-A
7927777 CATATAAA
1 -ATATAAA
*
7927785 TTAT-AA
1 ATATAAA
*
7927791 GTAT-AA
1 ATATAAA
* *
7927797 GTATATA
1 ATATAAA
*
7927804 CTATAAA
1 ATATAAA
*
7927811 GTATTAAA
1 ATA-TAAA
* *
7927819 CTATATA
1 ATATAAA
7927826 ATAT-AA
1 ATATAAA
* *
7927832 GTATTAA
1 ATATAAA
7927839 ATATAAA
1 ATATAAA
*
7927846 GTATTAAA
1 ATA-TAAA
*
7927854 GTATATAA
1 ATATA-AA
7927862 ATAT-AA
1 ATATAAA
* *
7927868 GTATTAA
1 ATATAAA
7927875 ATATAAA
1 ATATAAA
7927882 TTAATAAAGT
Statistics
Matches: 138, Mismatches: 30, Indels: 28
0.70 0.15 0.14
Matches are distributed among these distances:
6 20 0.14
7 73 0.53
8 30 0.22
9 4 0.03
10 10 0.07
11 1 0.01
ACGTcount: A:0.55, C:0.02, G:0.06, T:0.37
Consensus pattern (7 bp):
ATATAAA
Found at i:7927733 original size:38 final size:39
Alignment explanation
Indices: 7927691--7927823 Score: 121
Period size: 38 Copynumber: 3.4 Consensus size: 39
7927681 AAAACTTTAT
*
7927691 ATATATAAACTATAAAGTAT-TAGATTATATAATATAAA
1 ATATATAAACTATAAAGTATATAAATTATATAATATAAA
*
7927729 ATATA-AAA-TATATAAGTATATAAATTATATAGTATAAA
1 ATATATAAACTATA-AAGTATATAAATTATATAATATAAA
* * * *
7927767 AGTATATATACATATAAATTATAAGTATAAGTATATACTATAAA
1 A-TATATAAAC-TATAAAGTAT-A-TA-AATTATATAATATAAA
*
7927811 GTAT-TAAACTATA
1 ATATATAAACTATA
7927824 TAATATAAGT
Statistics
Matches: 78, Mismatches: 8, Indels: 15
0.77 0.08 0.15
Matches are distributed among these distances:
36 4 0.05
37 9 0.12
38 22 0.28
39 4 0.05
40 2 0.03
41 9 0.12
42 9 0.12
43 5 0.06
44 14 0.18
ACGTcount: A:0.54, C:0.03, G:0.06, T:0.37
Consensus pattern (39 bp):
ATATATAAACTATAAAGTATATAAATTATATAATATAAA
Found at i:7927749 original size:53 final size:52
Alignment explanation
Indices: 7927692--7927957 Score: 180
Period size: 50 Copynumber: 5.1 Consensus size: 52
7927682 AAACTTTATA
*
7927692 TATATAAACTATAAAGTATTAGATTATATAATATAAAATATAAAATATATAAG
1 TATATAAACTATAAAGTATTAAATTATATAATAT-AAATATAAAATATATAAG
* * * * *
7927745 TATATAAATTATATAGTATAAAAGTATATATACATATAAAT-TATAA-GTATAAG
1 TATATAAACTATAAAGTATTAAA-T-TATATA-ATATAAATATAAAATATATAAG
* *
7927798 TATAT--ACTATAAAGTATTAAACTATATAATATAAGTATTAAATATAAAGTATTAAAG
1 TATATAAACTATAAAGTATTAAATTATATAATATAAATA-TAAA-AT--A-TA-T-AAG
**
7927855 TATATAAA-TAT-AAGTATTAAA-TATA-AATTAATAAAGTAT-AGGTAT-TAAAG
1 TATATAAACTATAAAGTATTAAATTATATAA-T-ATAAA-TATAAAATATAT-AAG
* * * *
7927905 TATAT-AA-TGTAAAGTATTAAACTATATAATATAAGTATTAAATATA-AAG
1 TATATAAACTATAAAGTATTAAATTATATAATATAAATATAAAATATATAAG
7927954 TATA
1 TATA
7927958 AAGTATGTAA
Statistics
Matches: 171, Mismatches: 20, Indels: 48
0.72 0.08 0.20
Matches are distributed among these distances:
48 7 0.04
49 20 0.12
50 31 0.18
51 19 0.11
52 3 0.02
53 31 0.18
54 5 0.03
55 15 0.09
56 11 0.06
57 23 0.13
58 5 0.03
59 1 0.01
ACGTcount: A:0.54, C:0.02, G:0.08, T:0.37
Consensus pattern (52 bp):
TATATAAACTATAAAGTATTAAATTATATAATATAAATATAAAATATATAAG
Found at i:7927751 original size:17 final size:16
Alignment explanation
Indices: 7927729--7927795 Score: 59
Period size: 17 Copynumber: 4.2 Consensus size: 16
7927719 ATAATATAAA
7927729 ATATAAAATATATAAGT
1 ATATAAAATATAT-AGT
*
7927746 ATATAAATTATATAGT
1 ATATAAAATATATAGT
*
7927762 ATA-AAAGTATATA-T
1 ATATAAAATATATAGT
*
7927776 ACATATAAAT-TATAAGT
1 ATATA-AAATATAT-AGT
7927793 ATA
1 ATA
7927796 AGTATATACT
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
14 3 0.07
15 13 0.32
16 10 0.24
17 15 0.37
ACGTcount: A:0.55, C:0.01, G:0.06, T:0.37
Consensus pattern (16 bp):
ATATAAAATATATAGT
Found at i:7927752 original size:24 final size:24
Alignment explanation
Indices: 7927722--7927795 Score: 80
Period size: 24 Copynumber: 3.1 Consensus size: 24
7927712 AGATTATATA
7927722 ATATAAAATATAAAATATATAAGT
1 ATATAAAATATAAAATATATAAGT
* * * *
7927746 ATATAAATTATATAGTATAAAAGT
1 ATATAAAATATAAAATATATAAGT
*
7927770 ATATATACATAT-AAAT-TATAAGT
1 ATATA-AAATATAAAATATATAAGT
7927793 ATA
1 ATA
7927796 AGTATATACT
Statistics
Matches: 40, Mismatches: 9, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
23 9 0.22
24 27 0.68
25 4 0.10
ACGTcount: A:0.57, C:0.01, G:0.05, T:0.36
Consensus pattern (24 bp):
ATATAAAATATAAAATATATAAGT
Found at i:7927782 original size:32 final size:31
Alignment explanation
Indices: 7927730--7927803 Score: 93
Period size: 32 Copynumber: 2.5 Consensus size: 31
7927720 TAATATAAAA
*
7927730 TATAAAA-TATATAAGTATATAAATTATATAG
1 TATAAAAGTATATAAGCATATAAATTATA-AG
7927761 TATAAAAGTATATATA-CATATAAATTATAAG
1 TATAAAAGTATATA-AGCATATAAATTATAAG
7927792 TAT--AAGTATATA
1 TATAAAAGTATATA
7927804 CTATAAAGTA
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
29 9 0.22
31 12 0.30
32 18 0.45
33 1 0.03
ACGTcount: A:0.54, C:0.01, G:0.07, T:0.38
Consensus pattern (31 bp):
TATAAAAGTATATAAGCATATAAATTATAAG
Found at i:7927956 original size:14 final size:14
Alignment explanation
Indices: 7927825--7928109 Score: 114
Period size: 14 Copynumber: 19.4 Consensus size: 14
7927815 TAAACTATAT
7927825 AATAT-AAGTATTA
1 AATATAAAGTATTA
7927838 AATATAAAGTATTA
1 AATATAAAGTATTA
*
7927852 AAGTATATAAATA-TA
1 AA-TATA-AAGTATTA
*
7927867 AGTATTAAA-TA-TA
1 AATA-TAAAGTATTA
7927880 AATTAATAAAGTA-TA
1 AA-T-ATAAAGTATTA
**
7927895 GGTATTAAAGTA-TA
1 AATA-TAAAGTATTA
*
7927909 TAATGTAAAGTATTA
1 -AATATAAAGTATTA
7927924 AACTATATAA-TA-TA
1 AA-TATA-AAGTATTA
*
7927938 AGTATTAAA-TA-TA
1 AATA-TAAAGTATTA
7927951 AAGTATAAAGTATGTA
1 AA-TATAAAGTAT-TA
7927967 AATAT-AAGTATTA
1 AATATAAAGTATTA
* *
7927980 AATATGAAGTACATA
1 AATATAAAGTA-TTA
*
7927995 AGTATTAAAGTA-TA
1 AATA-TAAAGTATTA
*
7928009 TAATATAAAGTGTTAAA
1 -AATATAAAGTATT--A
7928026 CGATATAATATAAGTATTA
1 --A-AT-ATA-AAGTATTA
7928045 AATATAAAGTATTA
1 AATATAAAGTATTA
7928059 AAGTATATAA-TA-TA
1 AA-TATA-AAGTATTA
7928073 AAGTATTAAAGTATATA
1 AA-TA-TAAAGTAT-TA
*
7928090 AATA-GAAGTATTA
1 AATATAAAGTATTA
7928103 AAGTATA
1 AA-TATA
7928110 TAAATATATA
Statistics
Matches: 216, Mismatches: 20, Indels: 70
0.71 0.07 0.23
Matches are distributed among these distances:
13 35 0.16
14 93 0.43
15 47 0.22
16 22 0.10
17 6 0.03
18 1 0.00
19 3 0.01
20 3 0.01
21 6 0.03
ACGTcount: A:0.53, C:0.01, G:0.11, T:0.35
Consensus pattern (14 bp):
AATATAAAGTATTA
Found at i:7927978 original size:35 final size:35
Alignment explanation
Indices: 7927693--7928087 Score: 288
Period size: 35 Copynumber: 11.1 Consensus size: 35
7927683 AACTTTATAT
* *
7927693 ATATAAACTATAAAGTAT-TAGATTATATAA-TATAAA
1 ATATAAAGTATAAAGTATATA-A--ATATAAGTATTAA
* *
7927729 ATATAAAATATATAAGTATATAAATTATATAGTATAAA
1 ATATAAAGTATA-AAGTATATAAA-TATA-AGTATTAA
* *
7927767 AGTATATATACATATAAA-T-TATAAGTATAAGTA-TATA
1 A-TATA-A-A-GTATAAAGTATATAAATATAAGTATTA-A
* *
7927804 CTATAAAGTATTAAACTATAT-AATATAAGTATTAA
1 ATATAAAGTA-TAAAGTATATAAATATAAGTATTAA
7927839 ATATAAAGTATTAAAGTATATAAATATAAGTATTAA
1 ATATAAAGTA-TAAAGTATATAAATATAAGTATTAA
* *
7927875 ATATAAATTAATAAAGTATAGGT-ATTA-AAGTA-TATA
1 ATATAAAGT-ATAAAGTATA--TAAATATAAGTATTA-A
* *
7927911 ATGTAAAGTATTAAACTATAT-AATATAAGTATTAA
1 ATATAAAGTA-TAAAGTATATAAATATAAGTATTAA
*
7927946 ATATAAAGTATAAAGTATGTAAATATAAGTATTAA
1 ATATAAAGTATAAAGTATATAAATATAAGTATTAA
* * *
7927981 ATATGAAGTACATAAGTAT-TAAA-GT-A-TA-T-A
1 ATATAAAGTATA-AAGTATATAAATATAAGTATTAA
*
7928011 ATATAAAGTGTTAAACG-ATAT-AATATAAGTATTAA
1 ATATAAAGT-ATAAA-GTATATAAATATAAGTATTAA
7928046 ATATAAAGTATTAAAGTATAT-AATATAAAGTATTAA
1 ATATAAAGTA-TAAAGTATATAAATAT-AAGTATTAA
7928082 AGTATA
1 A-TATA
7928088 TAAATAGAAG
Statistics
Matches: 298, Mismatches: 25, Indels: 71
0.76 0.06 0.18
Matches are distributed among these distances:
30 15 0.05
31 5 0.02
32 3 0.01
33 5 0.02
34 20 0.07
35 101 0.34
36 95 0.32
37 21 0.07
38 14 0.05
39 9 0.03
40 2 0.01
41 3 0.01
42 5 0.02
ACGTcount: A:0.53, C:0.02, G:0.09, T:0.36
Consensus pattern (35 bp):
ATATAAAGTATAAAGTATATAAATATAAGTATTAA
Done.