Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001547.1 Hibiscus syriacus cultivar Beakdansim tig00003041_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10425128
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 41 of 51
Found at i:7928036 original size:100 final size:100
Alignment explanation
Indices: 7927692--7928117 Score: 427
Period size: 100 Copynumber: 4.1 Consensus size: 100
7927682 AAACTTTATA
* ** * * *
7927692 TATATAAACTATAAAGTATTAGATTATATAATATAAAATATAAAATATATAAGTATATAAATTAT
1 TATAT-AA-TATAAAGTATTAAACGATATAATAT-AAGTATTAAATATA-AAGTAT-TAAAGTAT
* * *
7927757 ATAGTATAAAAGTATATATA-CATATAAATTATAAGTA-T-AAG
61 ATAATAT-AAAGTAT-TAAAGTATATAAA-TA-AAGTATTAAAG
* *
7927798 TATATACTATAAAGTATTAAACTATATAATATAAGTATTAAATATAAAGTATTAAAGTATATAA-
1 TATATAATATAAAGTATTAAACGATATAATATAAGTATTAAATATAAAGTATTAAAGTATATAAT
* *
7927862 ATATAAGTATTAAATATAAATTAATAAAGTATAGGTATTAAAG
66 ATA-AAGTATTAAA-GT--A-T-ATAAA-TA-AAGTATTAAAG
* * *
7927905 TATATAATGTAAAGTATTAAACTATATAATATAAGTATTAAATATAAAGTA-TAAAGTATGTAA-
1 TATATAATATAAAGTATTAAACGATATAATATAAGTATTAAATATAAAGTATTAAAGTATATAAT
*
7927968 ATATAAGTATTAAA-TATGAAGTACAT-AAGTATTAAAG
66 ATA-AAGTATTAAAGTAT--A-TAAATAAAGTATTAAAG
*
7928005 TATATAATATAAAGTGTTAAACGATATAATATAAGTATTAAATATAAAGTATTAAAGTATATAAT
1 TATATAATATAAAGTATTAAACGATATAATATAAGTATTAAATATAAAGTATTAAAGTATATAAT
7928070 ATAAAGTATTAAAGTATATAAATAGAAGTATTAAAG
66 ATAAAGTATTAAAGTATATAAATA-AAGTATTAAAG
7928106 TATATAAATATA
1 TATAT-AATATA
7928118 TAGTTATATT
Statistics
Matches: 282, Mismatches: 21, Indels: 38
0.83 0.06 0.11
Matches are distributed among these distances:
99 8 0.03
100 67 0.24
101 48 0.17
102 22 0.08
103 16 0.06
104 25 0.09
105 13 0.05
106 31 0.11
107 52 0.18
ACGTcount: A:0.54, C:0.02, G:0.09, T:0.36
Consensus pattern (100 bp):
TATATAATATAAAGTATTAAACGATATAATATAAGTATTAAATATAAAGTATTAAAGTATATAAT
ATAAAGTATTAAAGTATATAAATAAAGTATTAAAG
Found at i:7928063 original size:22 final size:21
Alignment explanation
Indices: 7927727--7928109 Score: 195
Period size: 22 Copynumber: 17.3 Consensus size: 21
7927717 ATATAATATA
*
7927727 AAATATAAAATATATAAGTATAT
1 AAATATAAAGTATA-AAGTAT-T
*
7927750 AAATTATATAGTATAAAAGTATAT
1 AAA-TATAAAGTAT-AAAGTAT-T
*
7927774 ATACATATAAATTAT-AAGTA-T
1 A-A-ATATAAAGTATAAAGTATT
* * *
7927795 AAGTATATACTATAAAGTATT
1 AAATATAAAGTATAAAGTATT
7927816 AAACTATATAA-TAT-AAGTATT
1 AAA-TATA-AAGTATAAAGTATT
7927837 AAATATAAAGTATTAAAGTATAT
1 AAATATAAAGTA-TAAAGTAT-T
7927860 AAATAT-AAGTATTAAA-TA-T
1 AAATATAAAGTA-TAAAGTATT
*
7927879 AAATTAATAAAGTAT-AGGTATT
1 AAA-T-ATAAAGTATAAAGTATT
*
7927901 AAAGTATATAA-TGTAAAGTATT
1 AAA-TATA-AAGTATAAAGTATT
7927923 AAACTATATAA-TAT-AAGTATT
1 AAA-TATA-AAGTATAAAGTATT
7927944 AAATATAAAGTATAAAGTATGT
1 AAATATAAAGTATAAAGTAT-T
*
7927966 AAATAT-AAGTATTAAA-TATG
1 AAATATAAAGTA-TAAAGTATT
* *
7927986 AAGTACATAAGTATTAAAGTA-T
1 AAATATA-AAGTA-TAAAGTATT
*
7928008 ATAATATAAAGTGTTAAACGATATAAT
1 A-AATATAAAGT-ATAAA-G-TAT--T
* *
7928035 ATAAGTATTAAATATAAAGTATT
1 A-AA-TATAAAGTATAAAGTATT
* *
7928058 AAAGTATATAATATAAAGTATT
1 AAA-TATAAAGTATAAAGTATT
7928080 AAAGTATATAA--ATAGAAGTATT
1 AAA-TATA-AAGTATA-AAGTATT
7928102 AAAGTATA
1 AAA-TATA
7928110 TAAATATATA
Statistics
Matches: 296, Mismatches: 28, Indels: 73
0.75 0.07 0.18
Matches are distributed among these distances:
19 16 0.05
20 25 0.08
21 55 0.19
22 125 0.42
23 26 0.09
24 19 0.06
25 13 0.04
26 2 0.01
27 9 0.03
28 6 0.02
ACGTcount: A:0.54, C:0.02, G:0.09, T:0.36
Consensus pattern (21 bp):
AAATATAAAGTATAAAGTATT
Found at i:7928100 original size:36 final size:34
Alignment explanation
Indices: 7927717--7927984 Score: 192
Period size: 36 Copynumber: 7.5 Consensus size: 34
7927707 GTATTAGATT
*
7927717 ATATAA-TATAAAATATAAA-ATATATAAGTATATAA
1 ATATAAGTATTAAATATAAAGAT-TA-AAGTATAT-A
* *
7927752 ATTATATAGTATAAAAGTATATATACATATAAA-T-TATA
1 A-TATA-AGTATTAAA-TATA-A-AGAT-TAAAGTATATA
* *
7927790 AGTATAAGTA-TATACTATAAAGTATTAAACTATATA
1 A-TATAAGTATTA-AATATAAAG-ATTAAAGTATATA
7927826 ATATAAGTATTAAATATAAAGTATTAAAGTATATAA
1 ATATAAGTATTAAATATAAAG-ATTAAAGTATAT-A
* *
7927862 ATATAAGTATTAAATATAAATTAATAAAGTATAGGTA
1 ATATAAGTATTAAATATAAA-GATTAAAGTATA--TA
* * *
7927899 TTA-AAGTA-TATAATGTAAAGTATTAAACTATATA
1 ATATAAGTATTA-AATATAAAG-ATTAAAGTATATA
*
7927933 ATATAAGTATTAAATATAAAG-TATAAAGTATGTAA
1 ATATAAGTATTAAATATAAAGAT-TAAAGTATAT-A
7927968 ATATAAGTATTAAATAT
1 ATATAAGTATTAAATAT
7927985 GAAGTACATA
Statistics
Matches: 194, Mismatches: 17, Indels: 44
0.76 0.07 0.17
Matches are distributed among these distances:
33 1 0.01
34 17 0.09
35 66 0.34
36 70 0.36
37 9 0.05
38 14 0.07
39 7 0.04
40 2 0.01
41 3 0.02
42 5 0.03
ACGTcount: A:0.54, C:0.01, G:0.08, T:0.37
Consensus pattern (34 bp):
ATATAAGTATTAAATATAAAGATTAAAGTATATA
Found at i:7928336 original size:8 final size:8
Alignment explanation
Indices: 7928325--7928354 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
7928315 CATTTTTAGA
7928325 AATTTTAT
1 AATTTTAT
7928333 AATTTTAT
1 AATTTTAT
7928341 AATTTTAT
1 AATTTTAT
*
7928349 CATTTT
1 AATTTT
7928355 GCTCTCTCTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.63
Consensus pattern (8 bp):
AATTTTAT
Found at i:7928484 original size:11 final size:11
Alignment explanation
Indices: 7928465--7928495 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
7928455 TAAACACCCA
7928465 TTGTTCATCTC
1 TTGTTCATCTC
*
7928476 TTTTTCATCTC
1 TTGTTCATCTC
7928487 TTGTTCATC
1 TTGTTCATC
7928496 CATAAAACTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.10, C:0.26, G:0.06, T:0.58
Consensus pattern (11 bp):
TTGTTCATCTC
Found at i:7930765 original size:20 final size:20
Alignment explanation
Indices: 7930742--7930788 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
7930732 GTTTCCAATT
7930742 TCGCAACGCGAATCTGTAAA
1 TCGCAACGCGAATCTGTAAA
*
7930762 TCGCAACGCGAATTTGTAAA
1 TCGCAACGCGAATCTGTAAA
7930782 TCGCAAC
1 TCGCAAC
7930789 ACAAAAGTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.34, C:0.26, G:0.19, T:0.21
Consensus pattern (20 bp):
TCGCAACGCGAATCTGTAAA
Found at i:7930809 original size:40 final size:40
Alignment explanation
Indices: 7930762--7930892 Score: 185
Period size: 40 Copynumber: 3.3 Consensus size: 40
7930752 AATCTGTAAA
7930762 TCGCAACGCGAATTTGTAAATCGCAACACAAAAGTCAAAT
1 TCGCAACGCGAATTTGTAAATCGCAACACAAAAGTCAAAT
* * * *
7930802 TCACAACGCG--GTAGTCAAATTCGCAACACAAAATTCAAAT
1 TCGCAACGCGAATTTGT-AAA-TCGCAACACAAAAGTCAAAT
*
7930842 TCGCAACGCGAATTTGTAAATCGCAACACAGAAGTCAAAT
1 TCGCAACGCGAATTTGTAAATCGCAACACAAAAGTCAAAT
7930882 TCGCAACGCGA
1 TCGCAACGCGA
7930893 TAGCCAAATT
Statistics
Matches: 78, Mismatches: 9, Indels: 8
0.82 0.09 0.08
Matches are distributed among these distances:
38 3 0.04
39 3 0.04
40 66 0.85
41 3 0.04
42 3 0.04
ACGTcount: A:0.40, C:0.24, G:0.16, T:0.19
Consensus pattern (40 bp):
TCGCAACGCGAATTTGTAAATCGCAACACAAAAGTCAAAT
Found at i:7930839 original size:20 final size:20
Alignment explanation
Indices: 7930782--7930921 Score: 113
Period size: 20 Copynumber: 7.0 Consensus size: 20
7930772 AATTTGTAAA
7930782 TCGCAACACAAAAGTCAAAT
1 TCGCAACACAAAAGTCAAAT
* * ***
7930802 TCACAACGCGGTAGTCAAAT
1 TCGCAACACAAAAGTCAAAT
*
7930822 TCGCAACACAAAATTCAAAT
1 TCGCAACACAAAAGTCAAAT
* **
7930842 TCGCAACGCGAATTTGT-AAA-
1 TCGCAACAC-AA-AAGTCAAAT
*
7930862 TCGCAACACAGAAGTCAAAT
1 TCGCAACACAAAAGTCAAAT
* * * *
7930882 TCGCAACGCGATAGCCAAAT
1 TCGCAACACAAAAGTCAAAT
*
7930902 TCTCAACACAAAAGTCAAAT
1 TCGCAACACAAAAGTCAAAT
7930922 GTTATGCCTT
Statistics
Matches: 87, Mismatches: 29, Indels: 8
0.70 0.23 0.06
Matches are distributed among these distances:
18 2 0.02
19 4 0.05
20 75 0.86
21 5 0.06
22 1 0.01
ACGTcount: A:0.43, C:0.25, G:0.14, T:0.19
Consensus pattern (20 bp):
TCGCAACACAAAAGTCAAAT
Found at i:7930850 original size:80 final size:80
Alignment explanation
Indices: 7930762--7930921 Score: 266
Period size: 80 Copynumber: 2.0 Consensus size: 80
7930752 AATCTGTAAA
* *
7930762 TCGCAACGCGAATTTGTAAATCGCAACACAAAAGTCAAATTCACAACGCGGTAGTCAAATTCGCA
1 TCGCAACGCGAATTTGTAAATCGCAACACAAAAGTCAAATTCACAACGCGATAGCCAAATTCGCA
*
7930827 ACACAAAATTCAAAT
66 ACACAAAAGTCAAAT
* * *
7930842 TCGCAACGCGAATTTGTAAATCGCAACACAGAAGTCAAATTCGCAACGCGATAGCCAAATTCTCA
1 TCGCAACGCGAATTTGTAAATCGCAACACAAAAGTCAAATTCACAACGCGATAGCCAAATTCGCA
7930907 ACACAAAAGTCAAAT
66 ACACAAAAGTCAAAT
7930922 GTTATGCCTT
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
80 74 1.00
ACGTcount: A:0.42, C:0.24, G:0.14, T:0.19
Consensus pattern (80 bp):
TCGCAACGCGAATTTGTAAATCGCAACACAAAAGTCAAATTCACAACGCGATAGCCAAATTCGCA
ACACAAAAGTCAAAT
Found at i:7930909 original size:40 final size:39
Alignment explanation
Indices: 7930782--7930921 Score: 174
Period size: 40 Copynumber: 3.5 Consensus size: 39
7930772 AATTTGTAAA
* *
7930782 TCGCAACACAAAAGTCAAATTCACAACGCGGTAGTCAAAT
1 TCGCAACACAAAAGTCAAATTCGCAACGCGATAG-CAAAT
* * *
7930822 TCGCAACACAAAATTCAAATTCGCAACGCGAATTTGTAAA-
1 TCGCAACACAAAAGTCAAATTCGCAACGCG-A-TAGCAAAT
*
7930862 TCGCAACACAGAAGTCAAATTCGCAACGCGATAGCCAAAT
1 TCGCAACACAAAAGTCAAATTCGCAACGCGATAG-CAAAT
*
7930902 TCTCAACACAAAAGTCAAAT
1 TCGCAACACAAAAGTCAAAT
7930922 GTTATGCCTT
Statistics
Matches: 85, Mismatches: 11, Indels: 8
0.82 0.11 0.08
Matches are distributed among these distances:
38 2 0.02
39 4 0.05
40 74 0.87
41 3 0.04
42 2 0.02
ACGTcount: A:0.43, C:0.25, G:0.14, T:0.19
Consensus pattern (39 bp):
TCGCAACACAAAAGTCAAATTCGCAACGCGATAGCAAAT
Found at i:7932485 original size:18 final size:18
Alignment explanation
Indices: 7932462--7932497 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
7932452 AAGCAAAAGG
*
7932462 AAATCAAAATCGCAATCA
1 AAATCAAAATCCCAATCA
7932480 AAATCAAAATCCCAATCA
1 AAATCAAAATCCCAATCA
7932498 CAACCGGCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.56, C:0.25, G:0.03, T:0.17
Consensus pattern (18 bp):
AAATCAAAATCCCAATCA
Found at i:7932827 original size:13 final size:15
Alignment explanation
Indices: 7932806--7932841 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
7932796 GTCAAATTTG
7932806 AAACGCG-AAATCGC
1 AAACGCGAAAATCGC
7932820 AAAC-CGAAAATCGC
1 AAACGCGAAAATCGC
7932834 -AACGCGAA
1 AAACGCGAA
7932842 TTTGACTTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
13 5 0.25
14 15 0.75
ACGTcount: A:0.47, C:0.28, G:0.19, T:0.06
Consensus pattern (15 bp):
AAACGCGAAAATCGC
Found at i:7933000 original size:25 final size:25
Alignment explanation
Indices: 7932966--7933015 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
7932956 CAATCAATTA
7932966 AACATTGTTATGGGTACATTATTTG
1 AACATTGTTATGGGTACATTATTTG
7932991 AACATTGTTATGGGTACATTATTTG
1 AACATTGTTATGGGTACATTATTTG
7933016 GAAAATAATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.08, G:0.20, T:0.44
Consensus pattern (25 bp):
AACATTGTTATGGGTACATTATTTG
Found at i:7933409 original size:24 final size:25
Alignment explanation
Indices: 7933382--7933436 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 25
7933372 TTTCAAATTC
*
7933382 ATTTCATACGT-AATTGGAGTTTGA
1 ATTTCAAACGTCAATTGGAGTTTGA
** *
7933406 ATTT-AAATTTCAATTTGAGTTTGA
1 ATTTCAAACGTCAATTGGAGTTTGA
7933430 ATTTCAA
1 ATTTCAA
7933437 TATTCGGCTC
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
23 3 0.12
24 20 0.80
25 2 0.08
ACGTcount: A:0.33, C:0.07, G:0.15, T:0.45
Consensus pattern (25 bp):
ATTTCAAACGTCAATTGGAGTTTGA
Found at i:7933422 original size:18 final size:18
Alignment explanation
Indices: 7933401--7933437 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
7933391 GTAATTGGAG
7933401 TTTGAATTTAAATTTCAA
1 TTTGAATTTAAATTTCAA
* *
7933419 TTTGAGTTTGAATTTCAA
1 TTTGAATTTAAATTTCAA
7933437 T
1 T
7933438 ATTCGGCTCC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.32, C:0.05, G:0.11, T:0.51
Consensus pattern (18 bp):
TTTGAATTTAAATTTCAA
Found at i:7935010 original size:51 final size:51
Alignment explanation
Indices: 7934913--7935024 Score: 163
Period size: 51 Copynumber: 2.2 Consensus size: 51
7934903 GATTTAAAAC
* *
7934913 AACAAATCAATTAAATAAGCAAAAAAATAATTCTTATTTACACATCAAATTA
1 AACAAATCAATTAAACAAGCAAAAAAATAATTATTATTTACACATC-AATTA
* * *
7934965 AATAAATCAATTAAACAAGC-AAAAAATAATTATTATTTCCTCATCAATTA
1 AACAAATCAATTAAACAAGCAAAAAAATAATTATTATTTACACATCAATTA
7935015 AACAAATCAA
1 AACAAATCAA
7935025 CTTTTAATGT
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
50 14 0.26
51 22 0.41
52 18 0.33
ACGTcount: A:0.55, C:0.14, G:0.02, T:0.29
Consensus pattern (51 bp):
AACAAATCAATTAAACAAGCAAAAAAATAATTATTATTTACACATCAATTA
Found at i:7936583 original size:22 final size:22
Alignment explanation
Indices: 7936558--7936601 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
7936548 GATTTCGCTA
*
7936558 GAGACGGGAACGAATTTCGTCG
1 GAGACGGGAACGAATATCGTCG
* * *
7936580 GAGATGGGGACGGATATCGTCG
1 GAGACGGGAACGAATATCGTCG
7936602 TAGAGAATGA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.25, C:0.16, G:0.41, T:0.18
Consensus pattern (22 bp):
GAGACGGGAACGAATATCGTCG
Found at i:7936729 original size:20 final size:20
Alignment explanation
Indices: 7936704--7936937 Score: 192
Period size: 20 Copynumber: 11.7 Consensus size: 20
7936694 TAATATTGTG
*
7936704 TTTCGCATTGCGAATTTGAC
1 TTTCGCGTTGCGAATTTGAC
7936724 TTTCGCGTTGCGAATTTGAC
1 TTTCGCGTTGCGAATTTGAC
* *
7936744 TATCGCGTTGTGAATTTGAC
1 TTTCGCGTTGCGAATTTGAC
* * *
7936764 TATCACGTTGCAAATTTGAC
1 TTTCGCGTTGCGAATTTGAC
* **
7936784 TTTTG-GTTTATGAATTTGAC
1 TTTCGCG-TTGCGAATTTGAC
* * *
7936804 TTTTGTGTTGCGAATTTGGC
1 TTTCGCGTTGCGAATTTGAC
*
7936824 TATCGCGTTGCGAATTTGAC
1 TTTCGCGTTGCGAATTTGAC
*
7936844 -TTCTGTGTTGCG-ATTT-AC
1 TTTC-GCGTTGCGAATTTGAC
* *
7936862 AAATTCGTGTTGCGAATTTGAC
1 --TTTCGCGTTGCGAATTTGAC
* *
7936884 TATCGCGTTCCGAATTTGAC
1 TTTCGCGTTGCGAATTTGAC
* *
7936904 TTTTGTGTTGCG-ATTT-AC
1 TTTCGCGTTGCGAATTTGAC
7936922 ATATTCGCGTTGCGAA
1 -T-TTCGCGTTGCGAA
7936938 ATTGGAAACT
Statistics
Matches: 172, Mismatches: 31, Indels: 21
0.77 0.14 0.09
Matches are distributed among these distances:
18 4 0.02
19 12 0.07
20 145 0.84
21 9 0.05
22 2 0.01
ACGTcount: A:0.19, C:0.16, G:0.23, T:0.42
Consensus pattern (20 bp):
TTTCGCGTTGCGAATTTGAC
Found at i:7936872 original size:60 final size:60
Alignment explanation
Indices: 7936808--7936942 Score: 216
Period size: 60 Copynumber: 2.2 Consensus size: 60
7936798 TTTGACTTTT
*
7936808 GTGTTGCGAATTTGGCTATCGCGTTGCGAATTTGACTTCTGTGTTGCGATTTACAAATTC
1 GTGTTGCGAATTTGGCTATCGCGTTCCGAATTTGACTTCTGTGTTGCGATTTACAAATTC
* * *
7936868 GTGTTGCGAATTTGACTATCGCGTTCCGAATTTGACTTTTGTGTTGCGATTTACATATTC
1 GTGTTGCGAATTTGGCTATCGCGTTCCGAATTTGACTTCTGTGTTGCGATTTACAAATTC
* *
7936928 GCGTTGCGAAATTGG
1 GTGTTGCGAATTTGG
7936943 AAACTAGGTT
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
60 68 1.00
ACGTcount: A:0.19, C:0.16, G:0.25, T:0.40
Consensus pattern (60 bp):
GTGTTGCGAATTTGGCTATCGCGTTCCGAATTTGACTTCTGTGTTGCGATTTACAAATTC
Found at i:7936973 original size:20 final size:21
Alignment explanation
Indices: 7936924--7936977 Score: 67
Period size: 20 Copynumber: 2.7 Consensus size: 21
7936914 CGATTTACAT
7936924 ATTCGCGTTGCGAAATTGGAA
1 ATTCGCGTTGCGAAATTGGAA
* *
7936945 ACTAG-GTTGCGAAATTGG-A
1 ATTCGCGTTGCGAAATTGGAA
*
7936964 GTTCGCGTTGCGAA
1 ATTCGCGTTGCGAA
7936978 TTATTAGTCA
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
19 3 0.11
20 21 0.78
21 3 0.11
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (21 bp):
ATTCGCGTTGCGAAATTGGAA
Found at i:7937574 original size:22 final size:23
Alignment explanation
Indices: 7937540--7937583 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
7937530 TTATTTAATT
*
7937540 TAATTTATTTTATTATGTTTTCA
1 TAATTTATATTATTATGTTTTCA
*
7937563 TAATTTA-ATTATTTTGTTTTC
1 TAATTTATATTATTATGTTTTC
7937584 TTTATTTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.25, C:0.05, G:0.05, T:0.66
Consensus pattern (23 bp):
TAATTTATATTATTATGTTTTCA
Found at i:7938881 original size:18 final size:18
Alignment explanation
Indices: 7938854--7938896 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
7938844 GAATATTTAA
* *
7938854 GTTAATTAAATTAATCAT
1 GTTAAATAAATAAATCAT
*
7938872 GTTAAATAAATAAATTAT
1 GTTAAATAAATAAATCAT
*
7938890 TTTAAAT
1 GTTAAAT
7938897 TTTAATGGTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.49, C:0.02, G:0.05, T:0.44
Consensus pattern (18 bp):
GTTAAATAAATAAATCAT
Found at i:7938915 original size:6 final size:6
Alignment explanation
Indices: 7938904--7938935 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
7938894 AATTTTAATG
7938904 GTATAT GTATAT G--TAT GTATAT GTATAT GTAT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTAT
7938936 GTATGTATGT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
4 4 0.17
6 20 0.83
ACGTcount: A:0.31, C:0.00, G:0.19, T:0.50
Consensus pattern (6 bp):
GTATAT
Found at i:7938922 original size:4 final size:4
Alignment explanation
Indices: 7938913--7944768 Score: 10673
Period size: 4 Copynumber: 1487.0 Consensus size: 4
7938903 GGTATATGTA
* * *
7938913 TATG TATG TATA TGTA TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7938961 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG --TG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7939007 TATG TATG TATG TATG TATG TATG TATG TATG T-TG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7939054 TATG TATG TA-G TATG TATG TATG TATG TATG TATG TA-- TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7939099 TATG TATG TATG TATG TATG TA-- TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
7939145 TATG TATG TATG TA-G TAGG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7939192 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7939240 TATG TATG TATG TATG TATG TATG TATGGG TATG TATG TATG TATG T-TG
1 TATG TATG TATG TATG TATG TATG TAT--G TATG TATG TATG TATG TATG
7939289 TA-- TATG TATG TATG TATG TATG TATG TATG --TG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
7939333 TATG TATG TCTG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
7939381 TATG TATG TATG TATG TATG TATG TATG TATG TCTG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
7939429 TATG TATG TATG TATG TATG TATTG TGTG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TA-TG TATG TATG TATG TATG TATG TATG
7939478 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT-
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7939525 TATG TATG TATG TAT- TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7939572 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7939620 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7939668 TATG TATG TATG TATG TATG TATG TATG TATG TAT- TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7939715 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
7939763 TATG TATG TATG TATG TCTG TATG TATG TATG TATG TATG TA-G TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7939810 TATG TATG TATG TATG TA-G TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7939857 TAGTG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TA-TG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7939906 TATG TATG TA-- TATG TATG --TG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
7939950 TATG TATG TATG TATG TATG TATG TATG TATG TCTG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7939998 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7940046 TATG TATG TA-G TATG TATG TATG TATG TAT- TATG T-TG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7940091 TATG TATG TATG TATG TATG TATG TATGG TATG -ATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TAT-G TATG TATG TATG TATG TATG
* *
7940139 TATG TATA TCTG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
7940187 TATG TATTG TATG TATG --TG TATG TATG TATG GATG TATG TATG TATG
1 TATG TA-TG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7940234 TATG TATG TATG TATG TATG TATG TATG TA-G TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7940281 TATG TATG TATG TATG TATG TA-G TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7940328 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* *
7940376 T-TG TATT TATG TATG TATG TATG TA-G TATG TATG TGTAG TATG TAT-
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT-G TATG TATG
7940422 TATG TATG TATG TATG TA-G TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7940469 TA-G TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7940516 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7940564 TATG TATG TATG TATG TATG TATG -ATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7940611 TATG TATG TATG TATG TATG TA-G TATG TATG TATG TATG T-TG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7940657 TATG TATG TATG TATG TATG TATG TATG TATG T-TG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7940704 TATG TATG TATG -ATG TATG TA-G TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7940750 TATG T-TG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7940797 TATG TATG TATG -ATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7940844 TATG TA-G TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7940891 TATG TATG TATG TATG TATG TATG TATG TA-G TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7940938 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7940986 TA-G TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7941033 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7941081 TATG TATG TATG TATG TATG TATG TATG TATG T-TG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7941128 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7941176 TATG TATG TATG TAATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG T-ATG TATG TATG TATG TATG TATG TATG TATG TATG
7941225 TATG TATG TATG TATG TATG TATG TATG TA-G TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7941272 TATG TATG TATG TATG TA-G TATG T-TG TATG TATG TA-- TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7941316 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7941364 TATG TA-G TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7941411 TA-G TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
7941458 TATG TAGG TATG TTATG TATG TATG TATG TATG TA-G TATG TATG TATG
1 TATG TATG TATG -TATG TATG TATG TATG TATG TATG TATG TATG TATG
7941506 TA-G TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7941553 TATG TAT- TATG TATG TATG TATG TATG -ATG TA-- TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
7941597 TATG TATG TATG TATG TAGG TATG TATG -ATG TATG TATG TA-- TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
7941642 TATG TATG TATG TATG TATG TCTG TATG TATG TA-- TATG TATG TA-G
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7941687 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7941735 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7941783 TAATG TATG TATG TATG TATG TA-G TATG TATG TA-G TATG TA-G TATG
1 T-ATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7941829 TATG TATG TATG TATG TATG TATG TA-G TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7941876 TATG TATG TATG TATG TATG TATG -ATG TATG TATG TATTG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TA-TG TATG TATG
7941924 TATG TATG TATG TATG TATG TATG TATG TATG TATG TA-G TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7941971 TATG TA-G TATG TATG TA-- TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
7942016 TATG TATG TATG TATG T-TG TATG TA-G TATG TATG TATG GATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7942062 TATG TATG TATG TATG TATG TATG TATG TATG T-TG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7942109 TATG TATG TATG TATG TATG TATG TATG TATG TATGG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TAT-G TATG TATG TATG
7942158 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7942206 TATG TATG T-TG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7942253 TATG TATG TATG TA-- TATG TATG TATAG TATG TATG TATG TATG TA-G
1 TATG TATG TATG TATG TATG TATG TAT-G TATG TATG TATG TATG TATG
7942299 -ATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
7942346 TATG TATG TATG TA-G TATG TATG TATG TATG TATG TATG TATG TAGG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7942393 TATG TATG TATG TATG TATG TATG TATG TATG TA-- TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7942439 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7942487 TATG TA-G TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7942534 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7942582 TATG TATG TAT- TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7942629 TATG TATG TATG TATG TATG TATG TATG TA-G TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7942676 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7942724 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7942772 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7942820 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7942868 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7942916 --TG TATG TATG TATG TATG TATG TATG TATG TA-G TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7942961 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7943009 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7943057 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7943105 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7943153 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7943201 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TA-G
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7943248 TATG TATG TATG TATG TATG TATG TATG TATG TTATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG -TATG TATG TATG TATG
7943297 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7943345 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7943393 TATG TATG TATG TATG TATG TATG -ATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7943440 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TA-G
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7943487 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7943535 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG --TG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7943581 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7943629 TATG TATG TATG TATG TATG TATG TATG TATG TATG T-TG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7943676 TA-G TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7943723 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7943771 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7943819 TATG TATG TATG TATG TATG TATG TATG TA-G TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7943866 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7943914 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7943962 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7944010 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7944058 TATG TATG TATG TATG TATG TATG TATG TA-- TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7944104 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7944152 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7944200 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7944248 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7944296 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7944344 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7944392 TATG TATG TATG TATG TATG TATG TA-G TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7944439 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7944487 TATG TATG T-TG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7944534 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7944582 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7944630 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7944678 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7944726 TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT- TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7944769 AAAGAAATAT
Statistics
Matches: 5697, Mismatches: 35, Indels: 240
0.95 0.01 0.04
Matches are distributed among these distances:
2 37 0.01
3 206 0.04
4 5404 0.95
5 46 0.01
6 4 0.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:7948424 original size:19 final size:19
Alignment explanation
Indices: 7948400--7948446 Score: 85
Period size: 19 Copynumber: 2.5 Consensus size: 19
7948390 GTTGAACAGG
7948400 GGGGAATCGATACCCCATA
1 GGGGAATCGATACCCCATA
*
7948419 GGGGAATCGATACCCCTTA
1 GGGGAATCGATACCCCATA
7948438 GGGGAATCG
1 GGGGAATCG
7948447 GTTCCCTCCG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.28, C:0.23, G:0.32, T:0.17
Consensus pattern (19 bp):
GGGGAATCGATACCCCATA
Found at i:7951178 original size:20 final size:20
Alignment explanation
Indices: 7951150--7951210 Score: 68
Period size: 23 Copynumber: 2.9 Consensus size: 20
7951140 CCGTGGGGGT
*
7951150 ATCGATTCCCCTAAGGGTGA
1 ATCGGTTCCCCTAAGGGTGA
*
7951170 ATCGGTTCCCCTACAAAGGGGGA
1 ATCGGTTCCCCT---AAGGGTGA
*
7951193 ATCGGTTCCCCTAGGGGT
1 ATCGGTTCCCCTAAGGGT
7951211 ATCGATTCCC
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
20 15 0.44
23 19 0.56
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (20 bp):
ATCGGTTCCCCTAAGGGTGA
Found at i:7951194 original size:23 final size:23
Alignment explanation
Indices: 7951162--7951205 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
7951152 CGATTCCCCT
*
7951162 AAGGGTGAATCGGTTCCCCTACA
1 AAGGGGGAATCGGTTCCCCTACA
7951185 AAGGGGGAATCGGTTCCCCTA
1 AAGGGGGAATCGGTTCCCCTA
7951206 GGGGTATCGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.25, C:0.25, G:0.30, T:0.20
Consensus pattern (23 bp):
AAGGGGGAATCGGTTCCCCTACA
Found at i:7954956 original size:22 final size:21
Alignment explanation
Indices: 7954914--7954953 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
7954904 GAGTTTATTT
*
7954914 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTAAAACA
7954935 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
7954954 ACAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:7958382 original size:106 final size:106
Alignment explanation
Indices: 7958197--7958412 Score: 396
Period size: 106 Copynumber: 2.0 Consensus size: 106
7958187 TTGGTAATCT
* * *
7958197 TCCATTCACAGCCTGAAAATGTTGTGTTATATCCTTCTCCATCAAAGCTATCCTACAGAAATCAA
1 TCCATTCACAGCCTGAAAAGGTTGTGTTATATCCTTCTACATCAAAGCTATCCTACAAAAATCAA
*
7958262 ATTTCTTTTGAGGCTAGGAATATGTCTCACTCCCTTCAGCG
66 ATCTCTTTTGAGGCTAGGAATATGTCTCACTCCCTTCAGCG
7958303 TCCATTCACAGCCTGAAAAGGTTGTGTTATATCCTTCTACATCAAAGCTATCCTACAAAAATCAA
1 TCCATTCACAGCCTGAAAAGGTTGTGTTATATCCTTCTACATCAAAGCTATCCTACAAAAATCAA
7958368 ATCTCTTTTGAGGCTAGGAATATGTCTCACTCCCTTCAGCG
66 ATCTCTTTTGAGGCTAGGAATATGTCTCACTCCCTTCAGCG
7958409 TCCA
1 TCCA
7958413 GGTGGTCTGG
Statistics
Matches: 106, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
106 106 1.00
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (106 bp):
TCCATTCACAGCCTGAAAAGGTTGTGTTATATCCTTCTACATCAAAGCTATCCTACAAAAATCAA
ATCTCTTTTGAGGCTAGGAATATGTCTCACTCCCTTCAGCG
Found at i:7960109 original size:31 final size:31
Alignment explanation
Indices: 7960071--7960138 Score: 118
Period size: 31 Copynumber: 2.2 Consensus size: 31
7960061 TTCAATACAT
**
7960071 ATAATTTTATTAAAATTTAAAACTTTGACAA
1 ATAATTTTATTAAAATTTAAAACTTCAACAA
7960102 ATAATTTTATTAAAATTTAAAACTTCAACAA
1 ATAATTTTATTAAAATTTAAAACTTCAACAA
7960133 ATAATT
1 ATAATT
7960139 ATGGCCGCAG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.50, C:0.07, G:0.01, T:0.41
Consensus pattern (31 bp):
ATAATTTTATTAAAATTTAAAACTTCAACAA
Found at i:7965320 original size:3 final size:3
Alignment explanation
Indices: 7965312--7965373 Score: 124
Period size: 3 Copynumber: 20.7 Consensus size: 3
7965302 TAATTAACCC
7965312 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
7965360 TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TT
7965374 TTGTAACAGA
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:7965497 original size:2 final size:2
Alignment explanation
Indices: 7965490--7965587 Score: 196
Period size: 2 Copynumber: 49.0 Consensus size: 2
7965480 GTTTGAAACA
7965490 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7965532 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7965574 AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT
7965588 GTTTGAACAG
Statistics
Matches: 96, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 96 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7965868 original size:14 final size:16
Alignment explanation
Indices: 7965849--7965881 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
7965839 TAATCTTATC
7965849 TTTGATTTT-CA-AAA
1 TTTGATTTTACATAAA
7965863 TTTGATTTTACATAAA
1 TTTGATTTTACATAAA
7965879 TTT
1 TTT
7965882 CTATCACTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 9 0.53
15 2 0.12
16 6 0.35
ACGTcount: A:0.33, C:0.06, G:0.06, T:0.55
Consensus pattern (16 bp):
TTTGATTTTACATAAA
Found at i:7970092 original size:29 final size:29
Alignment explanation
Indices: 7970059--7970118 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
7970049 TTTAATAGTT
*
7970059 GAGACTCAACAAAACAGCACTTTATAATC
1 GAGACTCAACAAAACAACACTTTATAATC
*
7970088 GAGACTCAACAAAACAACACTTTATAGTC
1 GAGACTCAACAAAACAACACTTTATAATC
7970117 GA
1 GA
7970119 TTGACTATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.45, C:0.23, G:0.12, T:0.20
Consensus pattern (29 bp):
GAGACTCAACAAAACAACACTTTATAATC
Found at i:7971088 original size:2 final size:2
Alignment explanation
Indices: 7971081--7971108 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
7971071 ATGTTAACCC
7971081 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7971109 CTGAAAATCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7972219 original size:21 final size:21
Alignment explanation
Indices: 7972177--7972219 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
7972167 TTTCTGGGCT
* *
7972177 AGGGGAATCGGTACCCATTCA
1 AGGGGAATCGATACCCACTCA
* *
7972198 AGGGGAATCGATCCCCCCTCA
1 AGGGGAATCGATACCCACTCA
7972219 A
1 A
7972220 ACGAATATGA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.28, C:0.30, G:0.26, T:0.16
Consensus pattern (21 bp):
AGGGGAATCGATACCCACTCA
Found at i:7973375 original size:30 final size:30
Alignment explanation
Indices: 7973339--7973480 Score: 275
Period size: 30 Copynumber: 4.7 Consensus size: 30
7973329 AAGGAACATA
*
7973339 TGGATAGTTACCGAAGATCTTTATGACCTC
1 TGGATAGTTACCGAGGATCTTTATGACCTC
7973369 TGGATAGTTACCGAGGATCTTTATGACCTC
1 TGGATAGTTACCGAGGATCTTTATGACCTC
7973399 TGGATAGTTACCGAGGATCTTTATGACCTC
1 TGGATAGTTACCGAGGATCTTTATGACCTC
7973429 TGGATAGTTACCGAGGATCTTTATGACCTC
1 TGGATAGTTACCGAGGATCTTTATGACCTC
7973459 TGGATAGTTACCGAGGATCTTT
1 TGGATAGTTACCGAGGATCTTT
7973481 CATTGAGCTG
Statistics
Matches: 111, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
30 111 1.00
ACGTcount: A:0.24, C:0.19, G:0.23, T:0.34
Consensus pattern (30 bp):
TGGATAGTTACCGAGGATCTTTATGACCTC
Found at i:7976609 original size:29 final size:31
Alignment explanation
Indices: 7976557--7976615 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 31
7976547 ATTTAAGGCA
7976557 AAAATGGTTTTTGGACTTGAATTGAATTTAC
1 AAAATGGTTTTTGGACTTGAATTGAATTTAC
7976588 AAAAT-GTTTTTGGACTT-AATTGAATTTA
1 AAAATGGTTTTTGGACTTGAATTGAATTTA
7976616 TTCAAAGTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
29 11 0.39
30 12 0.43
31 5 0.18
ACGTcount: A:0.34, C:0.05, G:0.17, T:0.44
Consensus pattern (31 bp):
AAAATGGTTTTTGGACTTGAATTGAATTTAC
Found at i:7976728 original size:20 final size:20
Alignment explanation
Indices: 7976705--7976782 Score: 85
Period size: 20 Copynumber: 4.1 Consensus size: 20
7976695 TTCAAGATTG
*
7976705 CCCAGGGGGTATAGATTCCC
1 CCCAGGGGGTACAGATTCCC
*
7976725 CCCAGGGGGTACAGA-T-AC
1 CCCAGGGGGTACAGATTCCC
*
7976743 CCC---GGGTACAGATACCCC
1 CCCAGGGGGTACAGAT-TCCC
7976761 CCCAGGGGGTACAGATTCCC
1 CCCAGGGGGTACAGATTCCC
7976781 CC
1 CC
7976783 TGCAGGTTTT
Statistics
Matches: 47, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
15 9 0.19
18 8 0.17
19 1 0.02
20 19 0.40
21 10 0.21
ACGTcount: A:0.22, C:0.36, G:0.28, T:0.14
Consensus pattern (20 bp):
CCCAGGGGGTACAGATTCCC
Found at i:7976751 original size:15 final size:15
Alignment explanation
Indices: 7976731--7976760 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
7976721 TCCCCCCAGG
7976731 GGGTACAGATACCCC
1 GGGTACAGATACCCC
7976746 GGGTACAGATACCCC
1 GGGTACAGATACCCC
7976761 CCCAGGGGGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.33, G:0.27, T:0.13
Consensus pattern (15 bp):
GGGTACAGATACCCC
Found at i:7976856 original size:20 final size:21
Alignment explanation
Indices: 7976816--7976859 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
7976806 AACAGAATGT
7976816 CCAGGGGGTACCGATTCCCCC
1 CCAGGGGGTACCGATTCCCCC
7976837 CCAGGGGGTACCGATTCCCCC
1 CCAGGGGGTACCGATTCCCCC
7976858 CC
1 CC
7976860 TGTTCAACAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.14, C:0.45, G:0.27, T:0.14
Consensus pattern (21 bp):
CCAGGGGGTACCGATTCCCCC
Found at i:7976921 original size:21 final size:21
Alignment explanation
Indices: 7976895--7976937 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
7976885 ATTTGAATAT
*
7976895 TATGAAGGGGTATCGATTCCC
1 TATGAAGGGGTACCGATTCCC
7976916 TATGAAGGGGTACCGATTCCC
1 TATGAAGGGGTACCGATTCCC
7976937 T
1 T
7976938 CTATTCTGGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (21 bp):
TATGAAGGGGTACCGATTCCC
Found at i:7977003 original size:20 final size:22
Alignment explanation
Indices: 7976965--7977004 Score: 66
Period size: 20 Copynumber: 1.9 Consensus size: 22
7976955 TTTGAGTATA
7976965 AAAATCATCCCCAAACGGCTCC
1 AAAATCATCCCCAAACGGCTCC
7976987 AAAA-CATCCCC-AACGGCT
1 AAAATCATCCCCAAACGGCT
7977005 ATATACGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 7 0.39
21 7 0.39
22 4 0.22
ACGTcount: A:0.38, C:0.40, G:0.10, T:0.12
Consensus pattern (22 bp):
AAAATCATCCCCAAACGGCTCC
Found at i:7978172 original size:19 final size:20
Alignment explanation
Indices: 7978148--7978195 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
7978138 AATGATTTTC
*
7978148 TTTTGAAAACAAAAAT-AGA
1 TTTTGAAAACAAAAATGAAA
* *
7978167 TTTTGAAAGCCAAAATGAAA
1 TTTTGAAAACAAAAATGAAA
7978187 TTTTGAAAA
1 TTTTGAAAA
7978196 AGGATTTAGA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 14 0.58
20 10 0.42
ACGTcount: A:0.52, C:0.06, G:0.12, T:0.29
Consensus pattern (20 bp):
TTTTGAAAACAAAAATGAAA
Found at i:7979509 original size:29 final size:31
Alignment explanation
Indices: 7979457--7979515 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 31
7979447 ATTTAAGGCA
7979457 AAAATGGTTTTTGGACTTGAATTGAATTTAC
1 AAAATGGTTTTTGGACTTGAATTGAATTTAC
7979488 AAAAT-GTTTTTGGACTT-AATTGAATTTA
1 AAAATGGTTTTTGGACTTGAATTGAATTTA
7979516 TTCAAAGTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
29 11 0.39
30 12 0.43
31 5 0.18
ACGTcount: A:0.34, C:0.05, G:0.17, T:0.44
Consensus pattern (31 bp):
AAAATGGTTTTTGGACTTGAATTGAATTTAC
Found at i:7979628 original size:20 final size:20
Alignment explanation
Indices: 7979605--7979682 Score: 85
Period size: 20 Copynumber: 4.1 Consensus size: 20
7979595 TTCAAGATTG
*
7979605 CCCAGGGGGTATAGATTCCC
1 CCCAGGGGGTACAGATTCCC
*
7979625 CCCAGGGGGTACAGA-T-AC
1 CCCAGGGGGTACAGATTCCC
*
7979643 CCC---GGGTACAGATACCCC
1 CCCAGGGGGTACAGAT-TCCC
7979661 CCCAGGGGGTACAGATTCCC
1 CCCAGGGGGTACAGATTCCC
7979681 CC
1 CC
7979683 TGCAGGTTTT
Statistics
Matches: 47, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
15 9 0.19
18 8 0.17
19 1 0.02
20 19 0.40
21 10 0.21
ACGTcount: A:0.22, C:0.36, G:0.28, T:0.14
Consensus pattern (20 bp):
CCCAGGGGGTACAGATTCCC
Found at i:7979651 original size:15 final size:15
Alignment explanation
Indices: 7979631--7979660 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
7979621 TCCCCCCAGG
7979631 GGGTACAGATACCCC
1 GGGTACAGATACCCC
7979646 GGGTACAGATACCCC
1 GGGTACAGATACCCC
7979661 CCCAGGGGGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.33, G:0.27, T:0.13
Consensus pattern (15 bp):
GGGTACAGATACCCC
Found at i:7979755 original size:20 final size:21
Alignment explanation
Indices: 7979715--7979758 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
7979705 AACAGAATGT
7979715 CCAGGGGGTACCGATTCCCCC
1 CCAGGGGGTACCGATTCCCCC
7979736 CCAGGGGGTACCGATTCCCCC
1 CCAGGGGGTACCGATTCCCCC
7979757 CC
1 CC
7979759 TGTTCAACAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.14, C:0.45, G:0.27, T:0.14
Consensus pattern (21 bp):
CCAGGGGGTACCGATTCCCCC
Found at i:7979820 original size:21 final size:21
Alignment explanation
Indices: 7979794--7979836 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
7979784 ATTTGAATAT
*
7979794 TATGAAGGGGTATCGATTCCC
1 TATGAAGGGGTACCGATTCCC
7979815 TATGAAGGGGTACCGATTCCC
1 TATGAAGGGGTACCGATTCCC
7979836 T
1 T
7979837 CTATTCTGGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (21 bp):
TATGAAGGGGTACCGATTCCC
Found at i:7979902 original size:20 final size:22
Alignment explanation
Indices: 7979864--7979903 Score: 66
Period size: 20 Copynumber: 1.9 Consensus size: 22
7979854 TTTGAGTATA
7979864 AAAATCATCCCCAAACGGCTCC
1 AAAATCATCCCCAAACGGCTCC
7979886 AAAA-CATCCCC-AACGGCT
1 AAAATCATCCCCAAACGGCT
7979904 ATATACGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 7 0.39
21 7 0.39
22 4 0.22
ACGTcount: A:0.38, C:0.40, G:0.10, T:0.12
Consensus pattern (22 bp):
AAAATCATCCCCAAACGGCTCC
Found at i:7981891 original size:30 final size:30
Alignment explanation
Indices: 7981855--7981981 Score: 254
Period size: 30 Copynumber: 4.2 Consensus size: 30
7981845 AAGGAACATA
7981855 TGGATAGTTACCGAGGATCTTTATGACCTC
1 TGGATAGTTACCGAGGATCTTTATGACCTC
7981885 TGGATAGTTACCGAGGATCTTTATGACCTC
1 TGGATAGTTACCGAGGATCTTTATGACCTC
7981915 TGGATAGTTACCGAGGATCTTTATGACCTC
1 TGGATAGTTACCGAGGATCTTTATGACCTC
7981945 TGGATAGTTACCGAGGATCTTTATGACCTC
1 TGGATAGTTACCGAGGATCTTTATGACCTC
7981975 TGGATAG
1 TGGATAG
7981982 GTCCTTCGGA
Statistics
Matches: 97, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 97 1.00
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (30 bp):
TGGATAGTTACCGAGGATCTTTATGACCTC
Found at i:7984979 original size:11 final size:11
Alignment explanation
Indices: 7984956--7984989 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
7984946 ATAATAACAC
7984956 TATTAATATTTT
1 TATTAA-ATTTT
7984968 TATTAAATTTT
1 TATTAAATTTT
7984979 TATCTAAATTT
1 TAT-TAAATTT
7984990 ATTGTTATGT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 8 0.38
12 13 0.62
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (11 bp):
TATTAAATTTT
Found at i:7986761 original size:23 final size:23
Alignment explanation
Indices: 7986735--7986793 Score: 109
Period size: 23 Copynumber: 2.6 Consensus size: 23
7986725 TTTGTGAATG
7986735 TTAAACAAGCATGATCGCAAACA
1 TTAAACAAGCATGATCGCAAACA
*
7986758 TTAAACAAGCATAATCGCAAACA
1 TTAAACAAGCATGATCGCAAACA
7986781 TTAAACAAGCATG
1 TTAAACAAGCATG
7986794 TCTGTGACAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.49, C:0.20, G:0.12, T:0.19
Consensus pattern (23 bp):
TTAAACAAGCATGATCGCAAACA
Found at i:7987721 original size:24 final size:24
Alignment explanation
Indices: 7987692--7987741 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
7987682 GGAGGGTTGT
7987692 TCAAGTGGATGCATTTATATATTG
1 TCAAGTGGATGCATTTATATATTG
7987716 TCAAGTGGATGCATTTATATATTG
1 TCAAGTGGATGCATTTATATATTG
7987740 TC
1 TC
7987742 GATCTATGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.28, C:0.10, G:0.20, T:0.42
Consensus pattern (24 bp):
TCAAGTGGATGCATTTATATATTG
Found at i:7992105 original size:33 final size:31
Alignment explanation
Indices: 7992063--7992147 Score: 82
Period size: 33 Copynumber: 2.7 Consensus size: 31
7992053 ATAAATACCA
* *
7992063 AAATTATTTTTTAACTTATTTTAATATAAAATT
1 AAATAATTTTTTAACTTATTTTAAGAT--AATT
** *
7992096 AAATAATTTTTTATTTTAATTTAAGATAATT
1 AAATAATTTTTTAACTTATTTTAAGATAATT
* *
7992127 AAATAATTATTT-ACATATTTT
1 AAATAATTTTTTAACTTATTTT
7992148 GTAAAATCAA
Statistics
Matches: 42, Mismatches: 10, Indels: 3
0.76 0.18 0.05
Matches are distributed among these distances:
30 5 0.12
31 15 0.36
33 22 0.52
ACGTcount: A:0.42, C:0.02, G:0.01, T:0.54
Consensus pattern (31 bp):
AAATAATTTTTTAACTTATTTTAAGATAATT
Found at i:7992109 original size:28 final size:31
Alignment explanation
Indices: 7992078--7992139 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 31
7992068 ATTTTTTAAC
*
7992078 TTATTTTAATAT-A-A-AATTAAATAATTTT
1 TTATTTTAATATAAGATAATTAAATAATTAT
*
7992106 TTATTTTAATTTAAGATAATTAAATAATTAT
1 TTATTTTAATATAAGATAATTAAATAATTAT
7992137 TTA
1 TTA
7992140 CATATTTTGT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
28 11 0.38
29 1 0.03
30 1 0.03
31 16 0.55
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (31 bp):
TTATTTTAATATAAGATAATTAAATAATTAT
Found at i:7992211 original size:17 final size:17
Alignment explanation
Indices: 7992189--7992225 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
7992179 ATATGATTAT
7992189 ATTATAAGTAGTTTAA-A
1 ATTATAAGTA-TTTAATA
7992206 ATTATAAGTATTTAATA
1 ATTATAAGTATTTAATA
7992223 ATT
1 ATT
7992226 TAAAAATACA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 5 0.26
17 14 0.74
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (17 bp):
ATTATAAGTATTTAATA
Found at i:7992849 original size:82 final size:85
Alignment explanation
Indices: 7992761--7992981 Score: 279
Period size: 85 Copynumber: 2.6 Consensus size: 85
7992751 GTTAGGTGTA
* * *
7992761 ATTTTAAAATAATTAGAAGTTCAGGTACTAAATTAGATCAAAGGTTACAGTTTAAAC-TT-GTTT
1 ATTTTAAAATAATTAGAAGTTCAAGTACTAAATCAGATCAAAGGTTACAGTTTAAACGTTAG-GT
* *
7992824 TAA-T-TAAATGCTAAGTGCG
65 TAAGTATAAACGCTAAGTACG
* * * *
7992843 ATTTTAAAATAATTAAAAGTTGAAGTATTAAATCAAATCAAAGGTTACAGTTTAAACGTTAGGTT
1 ATTTTAAAATAATTAGAAGTTCAAGTACTAAATCAGATCAAAGGTTACAGTTTAAACGTTAGGTT
* * *
7992908 AAGTATAAACGTTAGGTATG
66 AAGTATAAACGCTAAGTACG
* *
7992928 ATTTTAAAATAATTGGAAGTTCAAGTACTAAATCGGATCAAAGGTTACAGTTTA
1 ATTTTAAAATAATTAGAAGTTCAAGTACTAAATCAGATCAAAGGTTACAGTTTA
7992982 GGTACTAATA
Statistics
Matches: 117, Mismatches: 18, Indels: 5
0.84 0.13 0.04
Matches are distributed among these distances:
82 51 0.44
83 6 0.05
84 2 0.02
85 58 0.50
ACGTcount: A:0.41, C:0.08, G:0.16, T:0.35
Consensus pattern (85 bp):
ATTTTAAAATAATTAGAAGTTCAAGTACTAAATCAGATCAAAGGTTACAGTTTAAACGTTAGGTT
AAGTATAAACGCTAAGTACG
Found at i:7992918 original size:18 final size:19
Alignment explanation
Indices: 7992884--7992924 Score: 66
Period size: 18 Copynumber: 2.2 Consensus size: 19
7992874 ATCAAATCAA
*
7992884 AGGTTACAGTTTAAACGTT
1 AGGTTACAGTATAAACGTT
7992903 AGGTTA-AGTATAAACGTT
1 AGGTTACAGTATAAACGTT
7992921 AGGT
1 AGGT
7992925 ATGATTTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 15 0.71
19 6 0.29
ACGTcount: A:0.34, C:0.07, G:0.24, T:0.34
Consensus pattern (19 bp):
AGGTTACAGTATAAACGTT
Found at i:7992960 original size:85 final size:82
Alignment explanation
Indices: 7992746--7992981 Score: 294
Period size: 82 Copynumber: 2.8 Consensus size: 82
7992736 AAACAAAAAC
* * *
7992746 TAAATGTTAGGTGTAATTTTAAAATAATTAGAAGTTCAGGTACTAAATTAGATCAAAGGTTACAG
1 TAAATGTTAGGTGTGATTTTAAAATAATTAGAAGTTCAAGTACTAAATCAGATCAAAGGTTACAG
*
7992811 TTTAAACTTGTTTTAAT
66 TTTAAACTTGTGTTAAT
* * * * * * *
7992828 TAAATGCTAAGTGCGATTTTAAAATAATTAAAAGTTGAAGTATTAAATCAAATCAAAGGTTACAG
1 TAAATGTTAGGTGTGATTTTAAAATAATTAGAAGTTCAAGTACTAAATCAGATCAAAGGTTACAG
7992893 TTTAAACGTTAG-GTTAAGT
66 TTTAAAC-TT-GTGTTAA-T
* * * *
7992912 ATAAACGTTAGGTATGATTTTAAAATAATTGGAAGTTCAAGTACTAAATCGGATCAAAGGTTACA
1 -TAAATGTTAGGTGTGATTTTAAAATAATTAGAAGTTCAAGTACTAAATCAGATCAAAGGTTACA
7992977 GTTTA
65 GTTTA
7992982 GGTACTAATA
Statistics
Matches: 128, Mismatches: 22, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
82 62 0.48
83 6 0.05
84 2 0.02
85 58 0.45
ACGTcount: A:0.41, C:0.07, G:0.17, T:0.35
Consensus pattern (82 bp):
TAAATGTTAGGTGTGATTTTAAAATAATTAGAAGTTCAAGTACTAAATCAGATCAAAGGTTACAG
TTTAAACTTGTGTTAAT
Found at i:7993858 original size:3 final size:3
Alignment explanation
Indices: 7993839--7993886 Score: 78
Period size: 3 Copynumber: 15.3 Consensus size: 3
7993829 TACGTATATA
7993839 TAT TAT GTAT ATAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT -TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
7993886 T
1 T
7993887 TTCATTAAAT
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
3 37 0.86
4 6 0.14
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:7995001 original size:19 final size:19
Alignment explanation
Indices: 7994977--7995014 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
7994967 TCGTTTGTTT
*
7994977 TTAAATTCCATTTTGACCC
1 TTAAATTCAATTTTGACCC
*
7994996 TTAAATTCAATTTTTACCC
1 TTAAATTCAATTTTGACCC
7995015 CGATTTGCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.29, C:0.24, G:0.03, T:0.45
Consensus pattern (19 bp):
TTAAATTCAATTTTGACCC
Found at i:7995078 original size:3 final size:3
Alignment explanation
Indices: 7995070--7995095 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
7995060 TTAGTCCTTC
7995070 ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT AT
7995096 ATATATTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:7995170 original size:2 final size:2
Alignment explanation
Indices: 7995163--7995204 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
7995153 ATTTAACTTA
7995163 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7995205 TTTCTTTTTA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7996059 original size:17 final size:16
Alignment explanation
Indices: 7996039--7996074 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
7996029 ATTATTATTG
7996039 ATATAATATAAAATTTT
1 ATAT-ATATAAAATTTT
*
7996056 ATATATTTAAAATTTT
1 ATATATATAAAATTTT
7996072 ATA
1 ATA
7996075 ATTATCAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
ATATATATAAAATTTT
Found at i:8000940 original size:20 final size:20
Alignment explanation
Indices: 8000915--8000955 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
8000905 TCATTTCATT
8000915 TAAAGGTCTTAACCTTTCAA
1 TAAAGGTCTTAACCTTTCAA
8000935 TAAAGGTCTTAACCTTTCAA
1 TAAAGGTCTTAACCTTTCAA
8000955 T
1 T
8000956 CCTCTCCCTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.34, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TAAAGGTCTTAACCTTTCAA
Found at i:8001438 original size:16 final size:16
Alignment explanation
Indices: 8001419--8001475 Score: 62
Period size: 16 Copynumber: 3.5 Consensus size: 16
8001409 TACCGTGGTA
*
8001419 ATATATTTAAGCTAAT
1 ATATATTTAAGTTAAT
* *
8001435 ATATATTT-CGTTTCAT
1 ATATATTTAAG-TTAAT
8001451 ATTATATTTAAGTTAAT
1 A-TATATTTAAGTTAAT
8001468 ATATATTT
1 ATATATTT
8001476 CGTTTCATAT
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
15 1 0.03
16 19 0.58
17 12 0.36
18 1 0.03
ACGTcount: A:0.37, C:0.05, G:0.05, T:0.53
Consensus pattern (16 bp):
ATATATTTAAGTTAAT
Found at i:8001458 original size:17 final size:17
Alignment explanation
Indices: 8001436--8001492 Score: 73
Period size: 17 Copynumber: 3.4 Consensus size: 17
8001426 TAAGCTAATA
8001436 TATATTTCGTTTCATAT
1 TATATTTCGTTTCATAT
* *
8001453 TATATTTAAG-TTAATA-
1 TATATTT-CGTTTCATAT
8001469 TATATTTCGTTTCATAT
1 TATATTTCGTTTCATAT
8001486 TATATTT
1 TATATTT
8001493 ATTATTTCGG
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
15 1 0.03
16 12 0.36
17 19 0.58
18 1 0.03
ACGTcount: A:0.30, C:0.07, G:0.05, T:0.58
Consensus pattern (17 bp):
TATATTTCGTTTCATAT
Found at i:8001462 original size:33 final size:33
Alignment explanation
Indices: 8001420--8001493 Score: 139
Period size: 33 Copynumber: 2.2 Consensus size: 33
8001410 ACCGTGGTAA
8001420 TATATTTAAGCTAATATATATTTCGTTTCATAT
1 TATATTTAAGCTAATATATATTTCGTTTCATAT
*
8001453 TATATTTAAGTTAATATATATTTCGTTTCATAT
1 TATATTTAAGCTAATATATATTTCGTTTCATAT
8001486 TATATTTA
1 TATATTTA
8001494 TTATTTCGGT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 40 1.00
ACGTcount: A:0.34, C:0.07, G:0.05, T:0.54
Consensus pattern (33 bp):
TATATTTAAGCTAATATATATTTCGTTTCATAT
Found at i:8005727 original size:65 final size:64
Alignment explanation
Indices: 8005622--8005763 Score: 171
Period size: 65 Copynumber: 2.2 Consensus size: 64
8005612 TTGTTGAAAG
* * * *
8005622 TGCATCGATGCATAAGAAGTGCATCGATGCACTTATTTAAATTA-ATGAACATCGAATGTCATTA
1 TGCATCGATGCATAAGAAGTACATCGATGCACTGATTTAAAATACA--AACATCGAATATCATTA
8005686 A
64 A
* * *
8005687 TGCATCGATGCATAAGGAGTACATCGATGCACCTGA-TTAAAATACAAACATCGAATATGATTTA
1 TGCATCGATGCATAAGAAGTACATCGATGCA-CTGATTTAAAATACAAACATCGAATATCATTAA
*
8005751 TGCACCGATGCAT
1 TGCATCGATGCAT
8005764 GGGTAGTGCA
Statistics
Matches: 67, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
64 27 0.40
65 36 0.54
66 4 0.06
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.28
Consensus pattern (64 bp):
TGCATCGATGCATAAGAAGTACATCGATGCACTGATTTAAAATACAAACATCGAATATCATTAA
Found at i:8005776 original size:64 final size:65
Alignment explanation
Indices: 8005622--8005783 Score: 170
Period size: 64 Copynumber: 2.5 Consensus size: 65
8005612 TTGTTGAAAG
* * * * *
8005622 TGCATCGATGCATAAGAAGTGCATCGATGCA-CTTATTTAAATTAATGAACATCGAATGTCATTA
1 TGCACCGATGCATAAGGAGTGCATCGATGCACCTGATTTAAAATAA-GAACATCGAATATCATTA
8005686 A
65 A
* * * *
8005687 TGCATCGATGCATAAGGAGTACATCGATGCACCTGA-TTAAAATACA-AACATCGAATATGATTT
1 TGCACCGATGCATAAGGAGTGCATCGATGCACCTGATTTAAAATA-AGAACATCGAATATCATTA
8005750 A
65 A
* *
8005751 TGCACCGATGCAT-GGGTAGTGCATCGTTGCACC
1 TGCACCGATGCATAAGG-AGTGCATCGATGCACC
8005784 CGTCAAGGGA
Statistics
Matches: 83, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
63 2 0.02
64 41 0.49
65 36 0.43
66 4 0.05
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.28
Consensus pattern (65 bp):
TGCACCGATGCATAAGGAGTGCATCGATGCACCTGATTTAAAATAAGAACATCGAATATCATTAA
Found at i:8006354 original size:18 final size:18
Alignment explanation
Indices: 8006331--8006378 Score: 87
Period size: 18 Copynumber: 2.7 Consensus size: 18
8006321 GAGTATATTA
8006331 GTCCTTCGGGACATAGTG
1 GTCCTTCGGGACATAGTG
8006349 GTCCTTCGGGACATAGTG
1 GTCCTTCGGGACATAGTG
*
8006367 GTCCTTCAGGAC
1 GTCCTTCGGGAC
8006379 GTATCCAGTG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.17, C:0.25, G:0.31, T:0.27
Consensus pattern (18 bp):
GTCCTTCGGGACATAGTG
Found at i:8006391 original size:22 final size:22
Alignment explanation
Indices: 8006331--8006422 Score: 92
Period size: 22 Copynumber: 4.5 Consensus size: 22
8006321 GAGTATATTA
8006331 GTCCTTCGGGAC--AT--AGTG
1 GTCCTTCGGGACGTATCCAGTG
8006349 GTCCTTCGGGAC--AT--AGTG
1 GTCCTTCGGGACGTATCCAGTG
*
8006367 GTCCTTCAGGACGTATCCAGTG
1 GTCCTTCGGGACGTATCCAGTG
* *
8006389 GTCCTTTGGGACGTATCCAATG
1 GTCCTTCGGGACGTATCCAGTG
*
8006411 GTCTTTCGGGAC
1 GTCCTTCGGGAC
8006423 AAATACTGAA
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
18 29 0.45
20 2 0.03
22 33 0.52
ACGTcount: A:0.16, C:0.24, G:0.30, T:0.29
Consensus pattern (22 bp):
GTCCTTCGGGACGTATCCAGTG
Found at i:8008331 original size:20 final size:20
Alignment explanation
Indices: 8008283--8008341 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
8008273 TCATTTCATT
8008283 TAAAGGTCTTAACCTTTCAA
1 TAAAGGTCTTAACCTTTCAA
8008303 T-AA-GTCTTAACCTTTCAA
1 TAAAGGTCTTAACCTTTCAA
8008321 TAAAGGTCTTAACCTTTCAA
1 TAAAGGTCTTAACCTTTCAA
8008341 T
1 T
8008342 CATCTCCCTA
Statistics
Matches: 37, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
18 16 0.43
19 4 0.11
20 17 0.46
ACGTcount: A:0.34, C:0.20, G:0.08, T:0.37
Consensus pattern (20 bp):
TAAAGGTCTTAACCTTTCAA
Found at i:8017800 original size:93 final size:93
Alignment explanation
Indices: 8017688--8017871 Score: 251
Period size: 93 Copynumber: 2.0 Consensus size: 93
8017678 TTTGAATCCG
* * *
8017688 GATGGTTCTTACACACCACAAATGTGTCCCAGTTTGAGCTATGAAATTAGACAGCAGTCATTTGA
1 GATGGTTCTTACACACCACAAATGTCTCCCAGTTTAAGCTATGAAATTAGACAGCAGTCATTCGA
**
8017753 TCAAGATGTGATGCTTAATAACAATTCT
66 TCAAGATGCAATGCTTAATAACAATTCT
* * * * * *
8017781 GATGGTTCTTACGCTCCACAAATGTCTCTCGGTTTAATCTATGAAATTAGGCAGCAGTCATTCGA
1 GATGGTTCTTACACACCACAAATGTCTCCCAGTTTAAGCTATGAAATTAGACAGCAGTCATTCGA
* *
8017846 TCAAGATGCAATGCTTGATAGCAATT
66 TCAAGATGCAATGCTTAATAACAATT
8017872 GTGAAGGAAT
Statistics
Matches: 78, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
93 78 1.00
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (93 bp):
GATGGTTCTTACACACCACAAATGTCTCCCAGTTTAAGCTATGAAATTAGACAGCAGTCATTCGA
TCAAGATGCAATGCTTAATAACAATTCT
Found at i:8027717 original size:112 final size:110
Alignment explanation
Indices: 8027528--8027741 Score: 365
Period size: 112 Copynumber: 1.9 Consensus size: 110
8027518 TACAAGGTAT
* *
8027528 ACACACACACACACACACACAACCCTATCTTCCTTCAACAATCATAAAATGGAAAATAACATATA
1 ACACACACACACACACACACAACCCTATCTCCCTTCAACAATCATAAAATGGAAAATAACATAAA
8027593 TAGCTAGTGATGTTGCAGATGACAGAACTGGCGATGTACATACAC
66 TAGCTAGTGATGTTGCAGATGACAGAACTGGCGATGTACATACAC
* *
8027638 ACACACACACACGAACACATATAACCCTATCTCCCTTCAACAATCATAAAATGGAAAATAACATA
1 ACACACACACAC--ACACACACAACCCTATCTCCCTTCAACAATCATAAAATGGAAAATAACATA
*
8027703 AATAGCTGGTGATGTTGCAGATGACAGAACTGGCGATGT
64 AATAGCTAGTGATGTTGCAGATGACAGAACTGGCGATGT
8027742 GGTGCTTGAG
Statistics
Matches: 97, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
110 12 0.12
112 85 0.88
ACGTcount: A:0.41, C:0.24, G:0.14, T:0.21
Consensus pattern (110 bp):
ACACACACACACACACACACAACCCTATCTCCCTTCAACAATCATAAAATGGAAAATAACATAAA
TAGCTAGTGATGTTGCAGATGACAGAACTGGCGATGTACATACAC
Found at i:8035382 original size:39 final size:39
Alignment explanation
Indices: 8035328--8035444 Score: 225
Period size: 39 Copynumber: 3.0 Consensus size: 39
8035318 TGGATCTAGG
*
8035328 AATTGCCCCCTGAATAATACCAACTAATGTTTGTGTTGC
1 AATTGCCCCCTGAATAATACCAACTAATGTTCGTGTTGC
8035367 AATTGCCCCCTGAATAATACCAACTAATGTTCGTGTTGC
1 AATTGCCCCCTGAATAATACCAACTAATGTTCGTGTTGC
8035406 AATTGCCCCCTGAATAATACCAACTAATGTTCGTGTTGC
1 AATTGCCCCCTGAATAATACCAACTAATGTTCGTGTTGC
8035445 GTTTGATAAT
Statistics
Matches: 77, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
39 77 1.00
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.32
Consensus pattern (39 bp):
AATTGCCCCCTGAATAATACCAACTAATGTTCGTGTTGC
Found at i:8035670 original size:30 final size:30
Alignment explanation
Indices: 8035634--8035694 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
8035624 AATGAGTCTG
*
8035634 AATCATTGGGGGCACAAGAATACAAACACT
1 AATCATTGGGGGCACAAGAATACAAAAACT
8035664 AATCATTGGGGGCACAAGAATACAAAAACT
1 AATCATTGGGGGCACAAGAATACAAAAACT
8035694 A
1 A
8035695 GTTTATAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.46, C:0.18, G:0.20, T:0.16
Consensus pattern (30 bp):
AATCATTGGGGGCACAAGAATACAAAAACT
Found at i:8036330 original size:2 final size:2
Alignment explanation
Indices: 8036323--8036357 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
8036313 TGAAAATCTT
8036323 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8036358 TTAAAAAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:8039648 original size:18 final size:18
Alignment explanation
Indices: 8039614--8039668 Score: 60
Period size: 18 Copynumber: 3.1 Consensus size: 18
8039604 TAAAAAGTAT
8039614 ATAAATTTAAA-ATTTTAA
1 ATAAATTTAAATA-TTTAA
*
8039632 ATAAATTGAAATATTTAA
1 ATAAATTTAAATATTTAA
*
8039650 A-AGTATTTAAATATTTAA
1 ATA-AATTTAAATATTTAA
8039668 A
1 A
8039669 AATAATAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
17 1 0.03
18 30 0.94
19 1 0.03
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.42
Consensus pattern (18 bp):
ATAAATTTAAATATTTAA
Found at i:8040625 original size:62 final size:63
Alignment explanation
Indices: 8040509--8040634 Score: 175
Period size: 62 Copynumber: 2.0 Consensus size: 63
8040499 ATCTCTTTTG
* * * *
8040509 ATTTGATTTTTTGTGTTGGTAGCGATTATTGATTTAAGTCAAAGTGCTCTGTCTCCATAAGGA
1 ATTTGATTTTTTGTATTGGTAACGATCATTGATTTAAGTCAAAGTGCTCTGTCTCCACAAGGA
* *
8040572 ATTTGA-TTTTTGTATTGGTAACGATCATTGATTTAAGTCAAAGTGTTGC-GTCTCTACAAGGA
1 ATTTGATTTTTTGTATTGGTAACGATCATTGATTTAAGTCAAAGTGCT-CTGTCTCCACAAGGA
8040634 A
1 A
8040635 GTAGAACAAA
Statistics
Matches: 56, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
62 49 0.88
63 7 0.12
ACGTcount: A:0.26, C:0.11, G:0.21, T:0.41
Consensus pattern (63 bp):
ATTTGATTTTTTGTATTGGTAACGATCATTGATTTAAGTCAAAGTGCTCTGTCTCCACAAGGA
Found at i:8045414 original size:2 final size:2
Alignment explanation
Indices: 8045407--8045432 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
8045397 AATGTACGAA
8045407 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
8045433 GATACTTAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8046814 original size:83 final size:83
Alignment explanation
Indices: 8046611--8046816 Score: 249
Period size: 82 Copynumber: 2.5 Consensus size: 83
8046601 CATTTGTTTG
* * * * *
8046611 ATAAACGCCGCTAAATTACTTCTCTATAGCGTCATTTGTT-GGATAAACGCCACTATAAACAACC
1 ATAAACACCGCTAAATTACTACTCTATTGCGGCGTTTGTTGGGATAAACGCCACTATAAACAACC
*
8046675 ATGTTGCGGCGTTTGTAT
66 ATGTTGCGACGTTTGTAT
* * * *
8046693 AAAAACATCGCTAAATTACTACTCTATTGCGGCGTTTGTTGGGA-AAATGCCACTATAAACAACT
1 ATAAACACCGCTAAATTACTACTCTATTGCGGCGTTTGTTGGGATAAACGCCACTATAAACAACC
8046757 ATGTT-CTGACGTTTG-AGCT
66 ATGTTGC-GACGTTTGTA--T
* *
8046776 ATAAACACCGCTACATTACCACTCTATTGCGGCGTTTGTTG
1 ATAAACACCGCTAAATTACTACTCTATTGCGGCGTTTGTTG
8046817 AAAAAACGCC
Statistics
Matches: 106, Mismatches: 14, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
81 2 0.02
82 63 0.59
83 41 0.39
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (83 bp):
ATAAACACCGCTAAATTACTACTCTATTGCGGCGTTTGTTGGGATAAACGCCACTATAAACAACC
ATGTTGCGACGTTTGTAT
Found at i:8046829 original size:42 final size:41
Alignment explanation
Indices: 8046551--8046832 Score: 157
Period size: 42 Copynumber: 6.8 Consensus size: 41
8046541 TAAACAAACA
* *
8046551 TATTGCGGCGTTTGTACGAAAAACGCCGCTAAATTATTACTC
1 TATTGCGGCGTTTGT-TGAAAAACGCCGCTAAATTACTACTC
* * * *
8046593 TATTGTGGCATTTGTTTGATAAACGCCGCTAAATTACTTCTC
1 TATTGCGGCGTTTG-TTGAAAAACGCCGCTAAATTACTACTC
* * * * * *
8046635 TATAGCGTCATTTGTTGGATAAACGCCACTATAA--ACAAC-C
1 TATTGCGGCGTTTGTT-GAAAAACGCCGCTA-AATTACTACTC
* **
8046675 ATGTTGCGGCGTTTGTAT-AAAAACATCGCTAAATTACTACTC
1 -TATTGCGGCGTTTGT-TGAAAAACGCCGCTAAATTACTACTC
* * * * *
8046717 TATTGCGGCGTTTGTTGGGAAAATGCCACTATAA--ACAACTA
1 TATTGCGGCGTTTGTT-GAAAAACGCCGCTA-AATTACTACTC
* * * * * * *
8046758 TGTT-CTGACGTTTG-AGCTATAAACACCGCTACATTACCACTC
1 TATTGC-GGCGTTTGTTG--AAAAACGCCGCTAAATTACTACTC
8046800 TATTGCGGCGTTTGTTGAAAAAACGCCGCTAAA
1 TATTGCGGCGTTTGTTG-AAAAACGCCGCTAAA
8046833 GTATAATTTT
Statistics
Matches: 175, Mismatches: 47, Indels: 36
0.68 0.18 0.14
Matches are distributed among these distances:
39 3 0.02
40 13 0.07
41 57 0.33
42 95 0.54
43 7 0.04
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (41 bp):
TATTGCGGCGTTTGTTGAAAAACGCCGCTAAATTACTACTC
Found at i:8049346 original size:2 final size:2
Alignment explanation
Indices: 8049339--8049363 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
8049329 TTAAGTTTAA
8049339 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
8049364 AAAAGCTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8050470 original size:201 final size:202
Alignment explanation
Indices: 8050120--8050527 Score: 800
Period size: 201 Copynumber: 2.0 Consensus size: 202
8050110 ACATAAACTC
8050120 ATAATCTAATTGAATTAAATAGAAATATTTCCGGTTAAATTGAGATCCCTACATCCTTAACATAA
1 ATAATCTAATTGAATTAAATAGAAATATTTCCGGTTAAATTGAGATCCCTACATCCTTAACATAA
8050185 ACTCATAACCTAATTGAGCGGGACACAAATTCTAAGTTCATTAAGCCTAAACCCAGAACCACTCT
66 ACTCATAACCTAATTGAGCGGGACACAAATTCTAAGTTCATTAAGCCTAAACCCAGAACCACTCT
8050250 CAGCTACACTCCATTTCGCAGTCGCTCAGGGCTTTCTTTCATTTCCCAGAATTTCACCCAAATCC
131 CAGCTACACTCCATTTCGCAGTCGCTCAGGGCTTTCTTTCATTTCCCAGAATTTCACCCAAATCC
8050315 AAAGTAA
196 AAAGTAA
*
8050322 ATAA-CTAATTGAATTAAATAGAAATATTTCGGGTTAAATTGAGATCCCTACATCCTTAACATAA
1 ATAATCTAATTGAATTAAATAGAAATATTTCCGGTTAAATTGAGATCCCTACATCCTTAACATAA
8050386 ACTCATAACCTAATTGAGCGGGACACAAATTCTAAGTTCATTAAGCCTAAACCCAGAACCACTCT
66 ACTCATAACCTAATTGAGCGGGACACAAATTCTAAGTTCATTAAGCCTAAACCCAGAACCACTCT
8050451 CAGCTACACTCCATTTCGCAGTCGCTCAGGGCTTTCTTTCATTTCCCAGAATTTCACCCAAATCC
131 CAGCTACACTCCATTTCGCAGTCGCTCAGGGCTTTCTTTCATTTCCCAGAATTTCACCCAAATCC
8050516 AAAGTAA
196 AAAGTAA
8050523 ATAAT
1 ATAAT
8050528 AAAAATAAAC
Statistics
Matches: 204, Mismatches: 1, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
201 200 0.98
202 4 0.02
ACGTcount: A:0.35, C:0.25, G:0.12, T:0.29
Consensus pattern (202 bp):
ATAATCTAATTGAATTAAATAGAAATATTTCCGGTTAAATTGAGATCCCTACATCCTTAACATAA
ACTCATAACCTAATTGAGCGGGACACAAATTCTAAGTTCATTAAGCCTAAACCCAGAACCACTCT
CAGCTACACTCCATTTCGCAGTCGCTCAGGGCTTTCTTTCATTTCCCAGAATTTCACCCAAATCC
AAAGTAA
Found at i:8051468 original size:13 final size:13
Alignment explanation
Indices: 8051468--8051499 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
8051458 CCGTTGACCC
*
8051468 GACCCGACCTGTT
1 GACCCGACCCGTT
8051481 GACCCGACCCGTT
1 GACCCGACCCGTT
8051494 GACCCG
1 GACCCG
8051500 TTGACCGTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.16, C:0.44, G:0.25, T:0.16
Consensus pattern (13 bp):
GACCCGACCCGTT
Found at i:8051469 original size:18 final size:18
Alignment explanation
Indices: 8051446--8051505 Score: 84
Period size: 18 Copynumber: 3.2 Consensus size: 18
8051436 ACCGGTCACA
8051446 ACCCGACCCGACCCGTTG
1 ACCCGACCCGACCCGTTG
*
8051464 ACCCGACCCGACCTGTTG
1 ACCCGACCCGACCCGTTG
8051482 ACCCGACCCGTTGACCCGTTG
1 ACCCGACCC---GACCCGTTG
8051503 ACC
1 ACC
8051506 GTAGACCGAC
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
18 26 0.70
21 11 0.30
ACGTcount: A:0.17, C:0.47, G:0.22, T:0.15
Consensus pattern (18 bp):
ACCCGACCCGACCCGTTG
Found at i:8054071 original size:24 final size:24
Alignment explanation
Indices: 8053954--8054069 Score: 171
Period size: 24 Copynumber: 4.8 Consensus size: 24
8053944 TTCGATTTGA
8053954 ATTCTGATCTGATACTTGACATGG
1 ATTCTGATCTGATACTTGACATGG
*
8053978 ATTCTGATCTGATA-TCTGACATAG
1 ATTCTGATCTGATACT-TGACATGG
*
8054002 ATTCTGATCTGATACTTGACTTGG
1 ATTCTGATCTGATACTTGACATGG
*
8054026 ATTCTGATCTGATACTTGACCTGG
1 ATTCTGATCTGATACTTGACATGG
* *
8054050 ATTTTGATATGATACTTGAC
1 ATTCTGATCTGATACTTGAC
8054070 CTTATTTATA
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
23 1 0.01
24 82 0.98
25 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.19, T:0.40
Consensus pattern (24 bp):
ATTCTGATCTGATACTTGACATGG
Found at i:8060781 original size:83 final size:82
Alignment explanation
Indices: 8060643--8060809 Score: 325
Period size: 83 Copynumber: 2.0 Consensus size: 82
8060633 ATAGAGCATC
8060643 TCCATCATCTGAAGTGTTGTAGTATTGCCTTGTGGATTGGAGTTTTTATTTAGACTCCAACAATC
1 TCCATCATCTGAAGTGTTGTAGTATTGCCTTGTGGATTGGAGTTTTTATTTAGACTCCAACAATC
8060708 CTTCTTCAAGTGACCCT
66 CTTCTTCAAGTGACCCT
8060725 TCCATCATCTGAAGTGTTTGTAGTATTGCCTTGTGGATTGGAGTTTTTATTTAGACTCCAACAAT
1 TCCATCATCTGAAGTG-TTGTAGTATTGCCTTGTGGATTGGAGTTTTTATTTAGACTCCAACAAT
8060790 CCTTCTTCAAGTGACCCT
65 CCTTCTTCAAGTGACCCT
8060808 TC
1 TC
8060810 TTTCCACAGT
Statistics
Matches: 84, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
82 16 0.19
83 68 0.81
ACGTcount: A:0.22, C:0.21, G:0.18, T:0.40
Consensus pattern (82 bp):
TCCATCATCTGAAGTGTTGTAGTATTGCCTTGTGGATTGGAGTTTTTATTTAGACTCCAACAATC
CTTCTTCAAGTGACCCT
Found at i:8064579 original size:229 final size:230
Alignment explanation
Indices: 8064134--8064616 Score: 871
Period size: 229 Copynumber: 2.1 Consensus size: 230
8064124 GTTATATTGT
*
8064134 AAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAATATATTTATTATTA
1 AAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAACATATTTATTATTA
8064199 TCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAA
66 TCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAA
*
8064264 TAATTTTGTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAA
131 TAATTTTGTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATAAAACACTATTAA
8064329 AAAAAATTGAAACATAAATTACATAACTTTAAAAA
196 AAAAAATTGAAACATAAATTACATAACTTTAAAAA
* * **
8064364 AAAGTATATATCATTTTTATAAAAGTGTTTATACTTATTTCACTGTGGAAAACATATTTATTATT
1 AAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTATTTCACTGT-GAAAACATATTTATTATT
8064429 ATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAA-AATCAA
65 ATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAA
8064493 ATAATTTT-TGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATAAAACACTATTA
130 ATAATTTTGTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATAAAACACTATTA
8064557 AAAAAAATTGAAACATAAATTACATAACTTTAAAAA
195 AAAAAAATTGAAACATAAATTACATAACTTTAAAAA
* *
8064593 AAAGTGTCGATCCTTTTTATAAAA
1 AAAGTATCTATCCTTTTTATAAAA
8064617 AGTATTGACA
Statistics
Matches: 242, Mismatches: 10, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
229 111 0.46
230 56 0.23
231 75 0.31
ACGTcount: A:0.45, C:0.08, G:0.08, T:0.39
Consensus pattern (230 bp):
AAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAACATATTTATTATTA
TCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAA
TAATTTTGTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATAAAACACTATTAA
AAAAAATTGAAACATAAATTACATAACTTTAAAAA
Found at i:8064698 original size:21 final size:23
Alignment explanation
Indices: 8064648--8064706 Score: 86
Period size: 23 Copynumber: 2.7 Consensus size: 23
8064638 ATAGGTAAAA
*
8064648 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
*
8064671 ATATAATGTAATAGGTATCG-TT
1 ATATAATGTAATAGGTAGCGCTT
8064693 -TATAATGTAATAGG
1 ATATAATGTAATAGG
8064707 CAGTTGTAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
21 14 0.41
22 2 0.06
23 18 0.53
ACGTcount: A:0.36, C:0.05, G:0.22, T:0.37
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:8065149 original size:23 final size:23
Alignment explanation
Indices: 8065118--8065181 Score: 83
Period size: 23 Copynumber: 2.8 Consensus size: 23
8065108 ATAGGTAAAA
* *
8065118 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCACTT
* *
8065141 ATATAATGTAATAGGTATCATTT
1 ATATAATGTAATAGGTAGCACTT
*
8065164 ATATAATGAAATAGGTAG
1 ATATAATGTAATAGGTAG
8065182 TTGTAAAGTA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.39, C:0.05, G:0.20, T:0.36
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCACTT
Found at i:8065630 original size:23 final size:23
Alignment explanation
Indices: 8065599--8065662 Score: 101
Period size: 23 Copynumber: 2.8 Consensus size: 23
8065589 ATAGGTAAAA
*
8065599 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
8065622 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
8065645 ATATAATGTAATAGGTAG
1 ATATAATGTAATAGGTAG
8065663 TTGTAAATTA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.36, C:0.05, G:0.22, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:8066128 original size:23 final size:23
Alignment explanation
Indices: 8066073--8066135 Score: 83
Period size: 22 Copynumber: 2.8 Consensus size: 23
8066063 ATAGGTAAAA
* *
8066073 ATATGATGTAATAGGTGGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
8066096 AT-TAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
8066118 ATATAATGTAATAGGTAG
1 ATATAATGTAATAGGTAG
8066136 TTGTAAAGTA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
22 18 0.53
23 16 0.47
ACGTcount: A:0.33, C:0.05, G:0.24, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:8066313 original size:951 final size:951
Alignment explanation
Indices: 8064415--8066534 Score: 3809
Period size: 951 Copynumber: 2.2 Consensus size: 951
8064405 ACTGTGGAAA
*
8064415 ACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAAT
1 ACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAAT
8064480 ATCAAAA-AATCAAATAA-TTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAAC
66 ATCAAAACAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAAC
*
8064543 ATAAAACACTATTAAAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAAGTGTCGATCCTT
131 ATGAAACACTATT-AAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAAGTGTCGATCCTT
*
8064608 TTTATAAAAAGTATTGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTAT
195 TTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTAT
8064673 ATAATGTAATAGGTATCGTTTATAATGTAATAGGCAGTTGTAAAGTATCTATCCTTTTATAAAAG
260 ATAATGTAATAGGTATCGTTTATAATGTAATAGGCAGTTGTAAAGTATCTATCCTTTTATAAAAG
*
8064738 TGTCCATACTTTTTTCACTGTGGAAAACATAATTTAATGTTATCTTTGAGTGAGTTTTAAGATAT
325 TGTCCATACTTTTTTCACTGTGGAAAACATAATTTAATGGTATCTTTGAGTGAGTTTTAAGATAT
*
8064803 TAATTTAGTAATTATAGGCATCTAATGATTTATTTTTACGTTACGATATATATTATTAAATTAAA
390 TAATTTAGTAATTATAGGCATCTAATGATTTATTTTTACATTACGATATATATTATTAAATTAAA
8064868 AACAATAAACATATATATTACATATTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTA
455 AACAATAAACATATATATTACATATTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTA
8064933 AATATTATTTTATAAAATATCAAAACAATCAATAATTTTTTGTGTAAATGAAATTATTAAATTAA
520 AATATTATTTTATAAAATATCAAAACAATCAATAATTTTTTGTGTAAATGAAATTATTAAATTAA
*
8064998 TATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTTTAAAA
585 TATTGTAGGTGGAAAACATAAAACACTATTAAAAAAATTGAAACATAAATTACATAACTTTAAAA
8065063 AAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTA
650 AAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTA
8065128 ATAGGTAGCGCTTATATAATGTAATAGGTATCATTTATATAATGAAATAGGTAGTTGTAAAGTAT
715 ATAGGTAGCGCTTATATAATGTAATAGGTATCATTTATATAATGAAATAGGTAGTTGTAAAGTAT
8065193 CTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTT
780 CTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTT
8065258 TTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACATTAC
845 TTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACATTAC
*
8065323 GATATATATTATTATTAAATTAAAACAATAAACATATATATT
910 GATATATATTATTATTAAATTAAAACAATAAAAATATATATT
8065365 ACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAAT
1 ACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAAT
8065430 ATCAAAACAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAAC
66 ATCAAAACAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAAC
8065495 ATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAAGTGTCGATCCTTT
131 ATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAAGTGTCGATCCTTT
8065560 TTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATA
196 TTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATA
* *
8065625 TAATGTAATAGGTATCGTTTATATAATGTAATAGGTAGTTGTAAATTATCTATCCTTTTTATAAA
261 TAATGTAATAGGTATCG-TT-TATAATGTAATAGGCAGTTGTAAAGTATCTATCC-TTTTATAAA
*
8065690 AGTGTCCATATTTTTTTCACTGTGG-AAACATTAATTTAA-GGTATCTTTTGAGTGAGTTTTAAG
323 AGTGTCCATACTTTTTTCACTGTGGAAAACA-TAATTTAATGGTATC-TTTGAGTGAGTTTTAAG
*
8065753 ATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTACATTACGATATATATTATTATTA
386 ATATTAATTTAGTAATTATAGGCATCTAATGATTTATTTTTACATTACG--ATATA-TATTATTA
8065818 AATTAAAAACAATAAACATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAATTT
448 AATTAAAAACAATAAACATATATATTACATA-TTATTATTATCTTTGGTTAATATTGTTAAATTT
8065883 AAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGTAAATGAAATTA
512 AAATTCTAAATATTATTTTATAAAATATCAAAACAATC-AATAATTTTTTGTGTAAATGAAATTA
8065948 TTAAATTAATATTGTAGGTGGAAAACATAAAACACTATT-AAAAAATTGAAACATAAATTACATA
576 TTAAATTAATATTGTAGGTGGAAAACATAAAACACTATTAAAAAAATTGAAACATAAATTACATA
* *
8066012 ACTTTAAAAAAAGTGTCTAT-CTTTTTAT-AAAAGTATGGACAC-TTCAATATAATAGGTAAAAA
641 ACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAA
* * *
8066074 TATGATGTAATAGGTGGCGCTTAT-TAATGTAATAGGTATCGTTTATATAATGTAATAGGTAGTT
706 TATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCATTTATATAATGAAATAGGTAGTT
*
8066138 GTAAAGTATCTATCC-TTTTAT-AAAGTGTCCATACTTTTTT-ATTGTGGAAAACATTAATTTAA
771 GTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAA
8066200 GGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTA-TTT
836 GGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTT
* * *
8066264 TTACGTTAGGATATATATTATTATTAAATTAAAAATAATAAAAATATATATT
901 TTACATTACGATATATATTATTATTAAATT-AAAACAATAAAAATATATATT
8066316 ACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAAT
1 ACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAAT
* *
8066381 ATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGAAAAAC
66 ATCAAAACAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAAC
* * *
8066446 ATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTTT-AAAAAAATTATCGATCATTT
131 ATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAAGTGTCGATCCTTT
8066510 TTATAAAAAGTATGGACACTTTCAA
196 TTATAAAAAGTATGGACACTTTCAA
8066535 CATATTATAA
Statistics
Matches: 1132, Mismatches: 25, Indels: 26
0.96 0.02 0.02
Matches are distributed among these distances:
950 144 0.13
951 416 0.37
952 79 0.07
953 48 0.04
954 158 0.14
955 43 0.04
956 19 0.02
957 47 0.04
958 114 0.10
959 64 0.06
ACGTcount: A:0.42, C:0.07, G:0.11, T:0.40
Consensus pattern (951 bp):
ACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAAT
ATCAAAACAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAAC
ATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAAGTGTCGATCCTTT
TTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATA
TAATGTAATAGGTATCGTTTATAATGTAATAGGCAGTTGTAAAGTATCTATCCTTTTATAAAAGT
GTCCATACTTTTTTCACTGTGGAAAACATAATTTAATGGTATCTTTGAGTGAGTTTTAAGATATT
AATTTAGTAATTATAGGCATCTAATGATTTATTTTTACATTACGATATATATTATTAAATTAAAA
ACAATAAACATATATATTACATATTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAA
ATATTATTTTATAAAATATCAAAACAATCAATAATTTTTTGTGTAAATGAAATTATTAAATTAAT
ATTGTAGGTGGAAAACATAAAACACTATTAAAAAAATTGAAACATAAATTACATAACTTTAAAAA
AAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAA
TAGGTAGCGCTTATATAATGTAATAGGTATCATTTATATAATGAAATAGGTAGTTGTAAAGTATC
TATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTT
TGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACATTACG
ATATATATTATTATTAAATTAAAACAATAAAAATATATATT
Found at i:8066375 original size:472 final size:480
Alignment explanation
Indices: 8064415--8066534 Score: 3818
Period size: 472 Copynumber: 4.5 Consensus size: 480
8064405 ACTGTGGAAA
*
8064415 ACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAAT
1 ACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAAT
8064480 ATCAAAA-AATCAAATAA-TTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAAC
66 ATCAAAACAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAAC
*
8064543 ATAAAACACTATTAAAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAAGTGTCGATCCTT
131 ATGAAACACTATT-AAAAAAATTGAAACATAAATTACATAACTTT-AAAAAAAGTGTCGATCCTT
*
8064608 TTTATAAAAAGTATTGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTAT
194 TTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTAT
*
8064673 ATAATGTAATAGGTATCG-TT-TATAATGTAATAGGCAGTTGTAAAGTATCTATCC-TTTTATAA
259 ATAATGTAATAGGTATCGTTTATATAATGTAATAGGTAGTTGTAAAGTATCTATCCTTTTTATAA
*
8064735 AAGTGTCCATACTTTTTTCACTGTGGAAAACA-TAATTTAATGTTATC-TTTGAGTGAGTTTTAA
324 AAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAA
* *
8064798 GATATTAATTTAGTAATTATAGGCATCTAATGATTTATTTTTACGTTACG--ATATA-TATTATT
389 GATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTACATTACGATATATATTATTATT
8064860 AAATTAAAAACAATAAACATATATATT
454 AAATTAAAAACAATAAACATATATATT
8064887 ACATA-TTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAAT
1 ACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAAT
8064951 ATCAAAACAATC-AATAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAAC
66 ATCAAAACAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAAC
*
8065015 ATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTT
131 ATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTGTCGATCCTTTT
8065080 TATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATAT
196 TATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATAT
* *
8065145 AATGTAATAGGTATCATTTATATAATGAAATAGGTAGTTGTAAAGTATCTATCCTTTTTATAAAA
261 AATGTAATAGGTATCGTTTATATAATGTAATAGGTAGTTGTAAAGTATCTATCCTTTTTATAAAA
8065210 GTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGA
326 GTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGA
8065275 TATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACATTACGATATATATTATTATTA
391 TATTAATTTAGTAATTATAGGCGTCTAATGATTTA-TTTTTACATTACGATATATATTATTATTA
8065340 AATT-AAAACAATAAACATATATATT
455 AATTAAAAACAATAAACATATATATT
8065365 ACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAAT
1 ACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAAT
8065430 ATCAAAACAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAAC
66 ATCAAAACAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAAC
8065495 ATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAAGTGTCGATCCTTT
131 ATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTTT-AAAAAAAGTGTCGATCCTTT
8065560 TTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATA
195 TTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATA
*
8065625 TAATGTAATAGGTATCGTTTATATAATGTAATAGGTAGTTGTAAATTATCTATCCTTTTTATAAA
260 TAATGTAATAGGTATCGTTTATATAATGTAATAGGTAGTTGTAAAGTATCTATCCTTTTTATAAA
*
8065690 AGTGTCCATATTTTTTTCACTGTGG-AAACATTAATTTAAGG-TATCTTTTGAGTGAGTTTTAAG
325 AGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAG
8065753 ATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTACATTACGATATATATTATTATTA
390 ATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTACATTACGATATATATTATTATTA
8065818 AATTAAAAACAATAAACATATATATT
455 AATTAAAAACAATAAACATATATATT
8065844 ACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAAT
1 ACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAAT
8065909 ATCAAAACAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAAC
66 ATCAAAACAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAAC
* *
8065974 ATAAAACACTATT-AAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTGTCTAT-CTTTT
131 ATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTGTCGATCCTTTT
*
8066037 TAT-AAAAGTATGGACAC-TTCAATATAATAGGTAAAAATATGATGTAATAGGTGGCGCTTAT-T
196 TATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATAT
8066099 AATGTAATAGGTATCGTTTATATAATGTAATAGGTAGTTGTAAAGTATCTATCC-TTTTAT-AAA
261 AATGTAATAGGTATCGTTTATATAATGTAATAGGTAGTTGTAAAGTATCTATCCTTTTTATAAAA
*
8066162 GTGTCCATACTTTTTT-ATTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGA
326 GTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGA
* *
8066226 TATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTACGTTAGGATATATATTATTATTAA
391 TATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTACATTACGATATATATTATTATTAA
* *
8066291 ATTAAAAATAATAAAAATATATATT
456 ATTAAAAACAATAAACATATATATT
8066316 ACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAAT
1 ACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAAT
* *
8066381 ATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGAAAAAC
66 ATCAAAACAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAAC
* * *
8066446 ATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTTTAAAAAAATTATCGATCATTTT
131 ATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTGTCGATCCTTTT
8066511 TATAAAAAGTATGGACACTTTCAA
196 TATAAAAAGTATGGACACTTTCAA
8066535 CATATTATAA
Statistics
Matches: 1595, Mismatches: 32, Indels: 38
0.96 0.02 0.02
Matches are distributed among these distances:
470 105 0.07
471 137 0.09
472 354 0.22
473 136 0.09
474 64 0.04
475 80 0.05
476 25 0.02
477 14 0.01
478 94 0.06
479 304 0.19
480 112 0.07
481 170 0.11
ACGTcount: A:0.42, C:0.07, G:0.11, T:0.40
Consensus pattern (480 bp):
ACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAAT
ATCAAAACAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAAC
ATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTGTCGATCCTTTT
TATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATAT
AATGTAATAGGTATCGTTTATATAATGTAATAGGTAGTTGTAAAGTATCTATCCTTTTTATAAAA
GTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGA
TATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTACATTACGATATATATTATTATTAA
ATTAAAAACAATAAACATATATATT
Found at i:8069822 original size:113 final size:113
Alignment explanation
Indices: 8069575--8070251 Score: 1250
Period size: 113 Copynumber: 6.0 Consensus size: 113
8069565 ATAGAATTAT
* * * *
8069575 GCAAAAAGTTGAACAAGTTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTTTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
* * *
8069640 ATTATGAACTTC--TCTGGAAAAGCTGCTCCATCAAGTGATAGATTTGA
66 ATTATGAAC-TCGAACTGGAAAAGCTGATCCATCAAGTGATGGATTTGA
8069687 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
*
8069752 ATTATGAACTCGAACTGGAAAAACTGATCCATCAAGTGATGGATTTGA
66 ATTATGAACTCGAACTGGAAAAGCTGATCCATCAAGTGATGGATTTGA
8069800 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
8069865 ATTATGAACTCGAACTGGAAAAGCTGATCCATCAAGTGATGGATTTGA
66 ATTATGAACTCGAACTGGAAAAGCTGATCCATCAAGTGATGGATTTGA
8069913 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
8069978 ATTATGAACTCGAACTGGAAAAGCTGATCCATCAAGTGATGGATTTGA
66 ATTATGAACTCGAACTGGAAAAGCTGATCCATCAAGTGATGGATTTGA
*
8070026 GGAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
8070091 ATTATGAACTCGAACTGGAAAAGCTGATCCATCAAGTGATGGATTTGA
66 ATTATGAACTCGAACTGGAAAAGCTGATCCATCAAGTGATGGATTTGA
8070139 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
8070204 ATTATGAACTCGAACTGGAAAAGCTGATCCATCAAGTGATGGATTTGA
66 ATTATGAACTCGAACTGGAAAAGCTGATCCATCAAGTGATGGATTTGA
8070252 ATCTTTGCTA
Statistics
Matches: 552, Mismatches: 11, Indels: 3
0.98 0.02 0.01
Matches are distributed among these distances:
111 2 0.00
112 70 0.13
113 480 0.87
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (113 bp):
GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
ATTATGAACTCGAACTGGAAAAGCTGATCCATCAAGTGATGGATTTGA
Found at i:8071174 original size:83 final size:83
Alignment explanation
Indices: 8071035--8071545 Score: 977
Period size: 83 Copynumber: 6.2 Consensus size: 83
8071025 CTTATTTCTA
*
8071035 CTATGAGCAAATTCATCTTCCAAATTCAATGATTGGTTCTGCCAAACCAGATCAGATAACTCAAA
1 CTATGAGCAAATTCATCTTCCAAATTCAATGATTGGTTCTGTCAAACCAGATCAGATAACTCAAA
8071100 GAACACTTCCAGAAGATG
66 GAACACTTCCAGAAGATG
*
8071118 CTATGAGTAAATTCATCTTCCAAATTCAATGATTGGTTCTGTCAAACCAGATCAGATAACTCAAA
1 CTATGAGCAAATTCATCTTCCAAATTCAATGATTGGTTCTGTCAAACCAGATCAGATAACTCAAA
8071183 GAACACTTCCAGAAGATG
66 GAACACTTCCAGAAGATG
*
8071201 CTATGAGTAAATTCATCTTCCAAATTCAATGATTGGTTCTGTCAAACCAGATCAGATAACTCAAA
1 CTATGAGCAAATTCATCTTCCAAATTCAATGATTGGTTCTGTCAAACCAGATCAGATAACTCAAA
8071266 GAACACTTCCAGAAGATG
66 GAACACTTCCAGAAGATG
8071284 CTATGAGCAAATTCATCTTCCAAATTCAATGATTGGTTCTGTCAAACCAGATCAGATAACTCAAA
1 CTATGAGCAAATTCATCTTCCAAATTCAATGATTGGTTCTGTCAAACCAGATCAGATAACTCAAA
8071349 GAACACTTCCAGAAGATG
66 GAACACTTCCAGAAGATG
*
8071367 CTATGAGCAAATTCATCTTCCAAATTCAATGATTGGTTCTATCAAACCAGATCAGATAACTCAAA
1 CTATGAGCAAATTCATCTTCCAAATTCAATGATTGGTTCTGTCAAACCAGATCAGATAACTCAAA
8071432 GAACACTTCCAGAAGATG
66 GAACACTTCCAGAAGATG
*
8071450 CTATGAGCAAATTCATCTTTCAAATTCAATGATTGGTTCTGTCAAACCAGATCAGATAACTCAAA
1 CTATGAGCAAATTCATCTTCCAAATTCAATGATTGGTTCTGTCAAACCAGATCAGATAACTCAAA
8071515 GAACACTTCCAGAAGATG
66 GAACACTTCCAGAAGATG
8071533 CTATGAGCAAATT
1 CTATGAGCAAATT
8071546 GCATTTATTC
Statistics
Matches: 422, Mismatches: 6, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
83 422 1.00
ACGTcount: A:0.38, C:0.21, G:0.14, T:0.27
Consensus pattern (83 bp):
CTATGAGCAAATTCATCTTCCAAATTCAATGATTGGTTCTGTCAAACCAGATCAGATAACTCAAA
GAACACTTCCAGAAGATG
Found at i:8072671 original size:1 final size:1
Alignment explanation
Indices: 8072667--8072710 Score: 70
Period size: 1 Copynumber: 44.0 Consensus size: 1
8072657 TTTTTGTCTC
* *
8072667 TTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
8072711 CTTCAAGCAT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
1 39 1.00
ACGTcount: A:0.00, C:0.05, G:0.00, T:0.95
Consensus pattern (1 bp):
T
Found at i:8072671 original size:16 final size:16
Alignment explanation
Indices: 8072650--8072710 Score: 77
Period size: 16 Copynumber: 3.8 Consensus size: 16
8072640 CTTGACCCCC
* *
8072650 CTTTTTCTTTTTGTCT
1 CTTTTTCTTTTTTTTT
8072666 CTTTTTCTTTTTTTTT
1 CTTTTTCTTTTTTTTT
* *
8072682 TTTTTTTTTTTTTTTT
1 CTTTTTCTTTTTTTTT
*
8072698 TTTTTTCTTTTTT
1 CTTTTTCTTTTTT
8072711 CTTCAAGCAT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 40 1.00
ACGTcount: A:0.00, C:0.10, G:0.02, T:0.89
Consensus pattern (16 bp):
CTTTTTCTTTTTTTTT
Found at i:8079505 original size:31 final size:31
Alignment explanation
Indices: 8079467--8079622 Score: 224
Period size: 31 Copynumber: 5.0 Consensus size: 31
8079457 CCCGAAGGAC
* ** *
8079467 CAGTCCATA-GATTCCGAAGAACCGAGGTAAT
1 CAGTCCATATG-TCCCGAAGAACATAGGTAAA
*
8079498 CAGTCCATATGTCCCGAAGGACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
* *
8079529 CAGTCCGTATGTTCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
8079560 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
*
8079591 CAGTCCTTATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
8079622 C
1 C
8079623 CCTCGACCCT
Statistics
Matches: 113, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
31 112 0.99
32 1 0.01
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.21
Consensus pattern (31 bp):
CAGTCCATATGTCCCGAAGAACATAGGTAAA
Found at i:8079864 original size:23 final size:24
Alignment explanation
Indices: 8079838--8079884 Score: 78
Period size: 23 Copynumber: 2.0 Consensus size: 24
8079828 ATATACTTGT
*
8079838 TTTCACATATATA-TTTCATATCA
1 TTTCACATATACACTTTCATATCA
8079861 TTTCACATATACACTTTCATATCA
1 TTTCACATATACACTTTCATATCA
8079885 CATGCCATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 12 0.55
24 10 0.45
ACGTcount: A:0.34, C:0.21, G:0.00, T:0.45
Consensus pattern (24 bp):
TTTCACATATACACTTTCATATCA
Found at i:8080501 original size:21 final size:21
Alignment explanation
Indices: 8080477--8080521 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
8080467 TCTTGTTCGT
* *
8080477 TTGAAGGGGTATCGGTTCCCC
1 TTGAAGGGGTACCGATTCCCC
*
8080498 TTGAATGGGTACCGATTCCCC
1 TTGAAGGGGTACCGATTCCCC
8080519 TTG
1 TTG
8080522 CCCAGAAATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.24, G:0.29, T:0.31
Consensus pattern (21 bp):
TTGAAGGGGTACCGATTCCCC
Found at i:8083716 original size:31 final size:31
Alignment explanation
Indices: 8083678--8083833 Score: 224
Period size: 31 Copynumber: 5.0 Consensus size: 31
8083668 CCCGAAGGAC
* * *
8083678 CAGTCCATA-GATTCCGAAGAACCTAGGTAAT
1 CAGTCCATATG-TCCCGAAGAACATAGGTAAA
*
8083709 CAGTCCATATGTCCCGAAGGACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
* * *
8083740 CAGTCCGTATGTTCCGAAGAATATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
8083771 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
*
8083802 CAGTCCTTATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
8083833 C
1 C
8083834 CCTCGACCCT
Statistics
Matches: 112, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
31 111 0.99
32 1 0.01
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.22
Consensus pattern (31 bp):
CAGTCCATATGTCCCGAAGAACATAGGTAAA
Found at i:8084075 original size:23 final size:24
Alignment explanation
Indices: 8084049--8084095 Score: 78
Period size: 23 Copynumber: 2.0 Consensus size: 24
8084039 ATATACTTGT
*
8084049 TTTCACATATATA-TTTCATATCA
1 TTTCACATATACACTTTCATATCA
8084072 TTTCACATATACACTTTCATATCA
1 TTTCACATATACACTTTCATATCA
8084096 CATGCCATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 12 0.55
24 10 0.45
ACGTcount: A:0.34, C:0.21, G:0.00, T:0.45
Consensus pattern (24 bp):
TTTCACATATACACTTTCATATCA
Found at i:8084712 original size:21 final size:21
Alignment explanation
Indices: 8084688--8084732 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
8084678 TCTTGTTCGT
* *
8084688 TTGAAGGGGTATCGGTTCCCC
1 TTGAAGGGGTACCGATTCCCC
*
8084709 TTGAATGGGTACCGATTCCCC
1 TTGAAGGGGTACCGATTCCCC
8084730 TTG
1 TTG
8084733 CCCAGAAATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.24, G:0.29, T:0.31
Consensus pattern (21 bp):
TTGAAGGGGTACCGATTCCCC
Found at i:8092229 original size:3 final size:3
Alignment explanation
Indices: 8092217--8092318 Score: 120
Period size: 3 Copynumber: 34.7 Consensus size: 3
8092207 TGTAATATTA
* * * *
8092217 AAT AAT -AT AAT AAT AAT AAT AAT AAT TAT TAT TAT TAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* *
8092264 AAT AAT AAT AAT TAT AAT AAT AAT AAT AAT TAT AAT AAT AAT -AT AAAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT
8092312 AA- AAT AA
1 AAT AAT AA
8092319 AAAATGAAAA
Statistics
Matches: 89, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
2 6 0.07
3 81 0.91
4 2 0.02
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (3 bp):
AAT
Found at i:8092451 original size:14 final size:14
Alignment explanation
Indices: 8092432--8092460 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
8092422 TTACTCGTAT
8092432 TTTATGTATTTATA
1 TTTATGTATTTATA
8092446 TTTATGTATTTATA
1 TTTATGTATTTATA
8092460 T
1 T
8092461 GCACGTGGGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.00, G:0.07, T:0.66
Consensus pattern (14 bp):
TTTATGTATTTATA
Found at i:8097200 original size:18 final size:18
Alignment explanation
Indices: 8097177--8097234 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
8097167 AAAATCACTT
8097177 TCCTTTCTTCTAAAGTCC
1 TCCTTTCTTCTAAAGTCC
* ** * *
8097195 TCCTTTATT-TTCACT-T
1 TCCTTTCTTCTAAAGTCC
8097211 TCCTTTCTTCTAAAGTCC
1 TCCTTTCTTCTAAAGTCC
8097229 TCCTTT
1 TCCTTT
8097235 ATTTTCTCTT
Statistics
Matches: 28, Mismatches: 10, Indels: 4
0.67 0.24 0.10
Matches are distributed among these distances:
16 8 0.29
17 6 0.21
18 14 0.50
ACGTcount: A:0.14, C:0.31, G:0.03, T:0.52
Consensus pattern (18 bp):
TCCTTTCTTCTAAAGTCC
Found at i:8097209 original size:34 final size:34
Alignment explanation
Indices: 8097171--8097245 Score: 141
Period size: 34 Copynumber: 2.2 Consensus size: 34
8097161 TTGCTAAAAA
8097171 TCACTTTCCTTTCTTCTAAAGTCCTCCTTTATTT
1 TCACTTTCCTTTCTTCTAAAGTCCTCCTTTATTT
8097205 TCACTTTCCTTTCTTCTAAAGTCCTCCTTTATTT
1 TCACTTTCCTTTCTTCTAAAGTCCTCCTTTATTT
*
8097239 TCTCTTT
1 TCACTTT
8097246 ATGTAAGATT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
34 40 1.00
ACGTcount: A:0.13, C:0.29, G:0.03, T:0.55
Consensus pattern (34 bp):
TCACTTTCCTTTCTTCTAAAGTCCTCCTTTATTT
Found at i:8098142 original size:19 final size:21
Alignment explanation
Indices: 8098097--8098145 Score: 59
Period size: 19 Copynumber: 2.5 Consensus size: 21
8098087 ACTGATTTTG
8098097 CCGGTTTTTAGCCGATTCAAA
1 CCGGTTTTTAGCCGATTCAAA
* *
8098118 CC-GTTTTTA-CCGGTTC-TA
1 CCGGTTTTTAGCCGATTCAAA
8098136 CCGGTTTTTA
1 CCGGTTTTTA
8098146 ATCGGTTCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
18 3 0.12
19 13 0.52
20 7 0.28
21 2 0.08
ACGTcount: A:0.16, C:0.24, G:0.18, T:0.41
Consensus pattern (21 bp):
CCGGTTTTTAGCCGATTCAAA
Found at i:8098565 original size:31 final size:32
Alignment explanation
Indices: 8098521--8098608 Score: 99
Period size: 31 Copynumber: 2.8 Consensus size: 32
8098511 AAATTAACCT
* *
8098521 CTAAAGTTTAGATAGAATATTAATTTAG-CCC
1 CTAAACTTTAGATAAAATATTAATTTAGACCC
* * *
8098552 TTAAACTTTAGATAAAATA-TCATTTTGACCC
1 CTAAACTTTAGATAAAATATTAATTTAGACCC
* *
8098583 CTAAACTATAGATAAAATATTGATTT
1 CTAAACTTTAGATAAAATATTAATTT
8098609 GATCCATGAA
Statistics
Matches: 47, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
30 6 0.13
31 36 0.77
32 5 0.11
ACGTcount: A:0.41, C:0.12, G:0.09, T:0.38
Consensus pattern (32 bp):
CTAAACTTTAGATAAAATATTAATTTAGACCC
Found at i:8099519 original size:5 final size:5
Alignment explanation
Indices: 8099509--8099533 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
8099499 GAAATAAACC
8099509 TAAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA
8099534 GATGATAAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:8100906 original size:32 final size:32
Alignment explanation
Indices: 8100854--8100957 Score: 104
Period size: 32 Copynumber: 3.3 Consensus size: 32
8100844 TTCAGGTCGA
* *
8100854 TTAATTTTGA-GTTGGATTAATATCGGATCGG
1 TTAATTTTCAGGTCGGATTAATATCGGATCGG
* * *
8100885 TTAATTTTTAGGTCGGATTAATATCGAATCTG
1 TTAATTTTCAGGTCGGATTAATATCGGATCGG
* * *
8100917 TTAGA-TTTCGGGTCGGGTCAATATCGGATCGG
1 TTA-ATTTTCAGGTCGGATTAATATCGGATCGG
*
8100949 TTGATTTTC
1 TTAATTTTC
8100958 GGTTTGGGTT
Statistics
Matches: 59, Mismatches: 11, Indels: 5
0.79 0.15 0.07
Matches are distributed among these distances:
31 10 0.17
32 48 0.81
33 1 0.02
ACGTcount: A:0.23, C:0.11, G:0.25, T:0.41
Consensus pattern (32 bp):
TTAATTTTCAGGTCGGATTAATATCGGATCGG
Found at i:8101799 original size:14 final size:14
Alignment explanation
Indices: 8101780--8101813 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
8101770 AAGTATTGGG
8101780 TCGGGTAAATCG-GT
1 TCGGGT-AATCGAGT
8101794 TCGGGTAATCGAGT
1 TCGGGTAATCGAGT
8101808 TCGGGT
1 TCGGGT
8101814 CCAGTTTGCT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.26
14 14 0.74
ACGTcount: A:0.18, C:0.15, G:0.38, T:0.29
Consensus pattern (14 bp):
TCGGGTAATCGAGT
Found at i:8103163 original size:26 final size:23
Alignment explanation
Indices: 8103117--8103164 Score: 60
Period size: 26 Copynumber: 2.0 Consensus size: 23
8103107 AAAAAAATTA
*
8103117 TAATTATTTTATTTCTAATATAG
1 TAATTATTTTATTTATAATATAG
8103140 TAATTAATTTTAATTTTATAATATA
1 TAATT-ATTTT-A-TTTATAATATA
8103165 TCAATATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 5 0.24
24 5 0.24
25 1 0.05
26 10 0.48
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (23 bp):
TAATTATTTTATTTATAATATAG
Found at i:8104778 original size:13 final size:14
Alignment explanation
Indices: 8104754--8104782 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
8104744 TCTTTCAGAC
8104754 CTTGCTCTTCCCTT
1 CTTGCTCTTCCCTT
8104768 CTTGC-CTTCCCTT
1 CTTGCTCTTCCCTT
8104781 CT
1 CT
8104783 ACCACTTCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.00, C:0.45, G:0.07, T:0.48
Consensus pattern (14 bp):
CTTGCTCTTCCCTT
Found at i:8112132 original size:19 final size:19
Alignment explanation
Indices: 8112089--8112132 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
8112079 TGATTTTACG
* *
8112089 AATTTAAGACTTTTTTTGT
1 AATTTTAGAATTTTTTTGT
*
8112108 AATTTTAGAATTTTTTTTT
1 AATTTTAGAATTTTTTTGT
8112127 AATTTT
1 AATTTT
8112133 TATATATAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.27, C:0.02, G:0.07, T:0.64
Consensus pattern (19 bp):
AATTTTAGAATTTTTTTGT
Found at i:8113046 original size:2 final size:2
Alignment explanation
Indices: 8113039--8113066 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
8113029 TTTAAAGTTA
8113039 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8113067 TAATAATAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Done.