Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001547.1 Hibiscus syriacus cultivar Beakdansim tig00003041_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10425128
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 44 of 51
Found at i:8536476 original size:86 final size:86
Alignment explanation
Indices: 8536325--8536512 Score: 304
Period size: 86 Copynumber: 2.2 Consensus size: 86
8536315 AGGACCATCG
* *
8536325 TGATATACAAGCTTGAGAAACCATCGTGATATGTAGGGGTTTCTTGGTGAAAAGCTTGAGGGACC
1 TGATA-ACAAGCTTGAGAAACCATCGTGATATGTAAGGGTTTCTTGATGAAAAGCTTGAGGGACC
*
8536390 ATCGTGATATGTAGGGGTTCTT
65 ATCGTGATATGTAGGGGTTCCT
* *
8536412 TGATAACAAGCTTGAGAAACCATCGTGATATGTAAGGGTTTCTTGATGACAATCTTGAGGGACCA
1 TGATAACAAGCTTGAGAAACCATCGTGATATGTAAGGGTTTCTTGATGAAAAGCTTGAGGGACCA
8536477 TCGTGATATGTAGGGGTTCCT
66 TCGTGATATGTAGGGGTTCCT
* *
8536498 TGATGACAAACTTGA
1 TGATAACAAGCTTGA
8536513 TGACCACTTG
Statistics
Matches: 94, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
86 89 0.95
87 5 0.05
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (86 bp):
TGATAACAAGCTTGAGAAACCATCGTGATATGTAAGGGTTTCTTGATGAAAAGCTTGAGGGACCA
TCGTGATATGTAGGGGTTCCT
Found at i:8536539 original size:54 final size:55
Alignment explanation
Indices: 8536453--8536560 Score: 164
Period size: 54 Copynumber: 2.0 Consensus size: 55
8536443 GTAAGGGTTT
* * *
8536453 CTTGATGACAATCTTGAGGGACCATCGTGATATGTAGGGGTTCCTTGATGACAAA
1 CTTGATGACAATCTTGAGGGACCAACGCGATATGTAGGGGTTCATTGATGACAAA
* *
8536508 CTTGATGACCA-CTTGAGGGACCAACGCGATATGTAGGGGTTCATTGGTGACAA
1 CTTGATGACAATCTTGAGGGACCAACGCGATATGTAGGGGTTCATTGATGACAA
8536561 TTAAGAAACT
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
54 38 0.79
55 10 0.21
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.27
Consensus pattern (55 bp):
CTTGATGACAATCTTGAGGGACCAACGCGATATGTAGGGGTTCATTGATGACAAA
Found at i:8536669 original size:90 final size:90
Alignment explanation
Indices: 8536560--8536885 Score: 453
Period size: 90 Copynumber: 3.6 Consensus size: 90
8536550 ATTGGTGACA
* *
8536560 ATTAAGAAACTGAGCCTTCGGGGTTTTTTTTATTTTTAAGTCCTTCGGGCCATCCATAAGACCTT
1 ATTAAGAAACTGAGCCTTCGGGGTTTTCTTGATTTTTAAGTCCTTCGGGCCATCCATAAGACCTT
*
8536625 CAGTGTAGGATGTTTTCAAATGGCA-
66 CAGTGCAGGATGTTTTCAAATGG-AG
* * *
8536650 ATTAAGAAACTGAGCCTTCGGGGGTTTCTTGATTTTTAAGTCCTTCAGGCTATCCATAAGACCTT
1 ATTAAGAAACTGAGCCTTCGGGGTTTTCTTGATTTTTAAGTCCTTCGGGCCATCCATAAGACCTT
8536715 CAGTGCAGGATGTTTTCAAAT-GAG
66 CAGTGCAGGATGTTTTCAAATGGAG
8536739 ATCTAAGAAACTGAGCCTTCAGGGG-TTTCTTGATTTTTAAGTCCTTCGGGCCATCCATAAGACC
1 AT-TAAGAAACTGAGCCTTC-GGGGTTTTCTTGATTTTTAAGTCCTTCGGGCCATCCATAAGACC
*
8536803 TTCAGTGCAAGATGTTTTCAAAT-GAG
64 TTCAGTGCAGGATGTTTTCAAATGGAG
* * * * * *
8536829 ATTTTAAGAAACTAAGTCTTCGGGGTTTTTTTTTATTTTTAAATCCTTCGGGTCATC
1 A--TTAAGAAACTGAGCCTTCGGGG-TTTTCTTGATTTTTAAGTCCTTCGGGCCATC
8536886 TGTAAGCCTT
Statistics
Matches: 214, Mismatches: 15, Indels: 12
0.89 0.06 0.05
Matches are distributed among these distances:
88 1 0.00
89 3 0.01
90 164 0.77
91 19 0.09
92 27 0.13
ACGTcount: A:0.25, C:0.18, G:0.21, T:0.37
Consensus pattern (90 bp):
ATTAAGAAACTGAGCCTTCGGGGTTTTCTTGATTTTTAAGTCCTTCGGGCCATCCATAAGACCTT
CAGTGCAGGATGTTTTCAAATGGAG
Found at i:8538051 original size:19 final size:21
Alignment explanation
Indices: 8538015--8538057 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
8538005 GTATTATACG
8538015 TTTTTTATTAATTCATTTGAAT
1 TTTTTTATTAATTCATTTG-AT
8538037 TTTTTTA-T-ATT-ATTTGAT
1 TTTTTTATTAATTCATTTGAT
8538055 TTT
1 TTT
8538058 GATCATTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
18 5 0.24
19 5 0.24
20 3 0.14
21 1 0.05
22 7 0.33
ACGTcount: A:0.23, C:0.02, G:0.05, T:0.70
Consensus pattern (21 bp):
TTTTTTATTAATTCATTTGAT
Found at i:8538342 original size:2 final size:2
Alignment explanation
Indices: 8538335--8538371 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
8538325 TTACATGACT
8538335 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8538372 TAACGTTTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:8542276 original size:9 final size:9
Alignment explanation
Indices: 8542250--8542279 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
8542240 ACCAAGTGAC
*
8542250 TCATCTTCC
1 TCATCTTCT
8542259 TCATCTTCT
1 TCATCTTCT
8542268 TCATCTTCT
1 TCATCTTCT
8542277 TCA
1 TCA
8542280 ATCAAACGGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.13, C:0.37, G:0.00, T:0.50
Consensus pattern (9 bp):
TCATCTTCT
Found at i:8567013 original size:31 final size:31
Alignment explanation
Indices: 8566975--8567159 Score: 327
Period size: 31 Copynumber: 6.0 Consensus size: 31
8566965 CCCGAAGGAC
* *
8566975 CAGTCCATA-GATTCCGAAGAACCTAGGTAAA
1 CAGTCCATATG-TCCCGAAGAACATAGGTAAA
*
8567006 CAGTCCATATGTCCTGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
8567037 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
8567068 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
8567099 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
8567130 CAGTCCATATGTCCCGAAGAACATAGGTAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAA
8567160 CCCTCGACCC
Statistics
Matches: 149, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
31 148 0.99
32 1 0.01
ACGTcount: A:0.38, C:0.22, G:0.19, T:0.20
Consensus pattern (31 bp):
CAGTCCATATGTCCCGAAGAACATAGGTAAA
Found at i:8571397 original size:31 final size:31
Alignment explanation
Indices: 8571359--8571543 Score: 318
Period size: 31 Copynumber: 6.0 Consensus size: 31
8571349 CCCGAAGGAC
* *
8571359 CAGTCCATA-GATTCCGAAGAACCTAGGTAAA
1 CAGTCCATATG-TCCCGAAGAACATAGGTAAA
**
8571390 CAGTCCATATGTCCTAAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
8571421 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
8571452 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
8571483 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
8571514 CAGTCCATATGTCCCGAAGAACATAGGTAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAA
8571544 CCCTCGACCC
Statistics
Matches: 147, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
31 146 0.99
32 1 0.01
ACGTcount: A:0.39, C:0.22, G:0.19, T:0.20
Consensus pattern (31 bp):
CAGTCCATATGTCCCGAAGAACATAGGTAAA
Found at i:8573552 original size:41 final size:41
Alignment explanation
Indices: 8573497--8573588 Score: 121
Period size: 41 Copynumber: 2.2 Consensus size: 41
8573487 AGCATTTTCG
* * * * *
8573497 ACTCCTTGTCCTCTCGTGGTGGTTGATATTTTCCTCTGATC
1 ACTCCTCGTTCTCTCGTGATGGTTGATATTGTCCTCCGATC
* *
8573538 ACTTCTCGTTCTCTCGTGATGGTTGATATTGTCCTCCGATG
1 ACTCCTCGTTCTCTCGTGATGGTTGATATTGTCCTCCGATC
8573579 ACTCCTCGTT
1 ACTCCTCGTT
8573589 GATCTTTTTT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.11, C:0.27, G:0.20, T:0.42
Consensus pattern (41 bp):
ACTCCTCGTTCTCTCGTGATGGTTGATATTGTCCTCCGATC
Found at i:8574045 original size:55 final size:54
Alignment explanation
Indices: 8573987--8574691 Score: 674
Period size: 55 Copynumber: 12.6 Consensus size: 54
8573977 ATACTTGAAA
* * *
8573987 AATCTTCAAATGACGGGTCTGCTCCCTATTCTTTCAAGGAGTATA-AGACTCGATA-
1 AATCTTCAAA-AACGGGTCCGCTCCCTATTCCTTCAAGGAGTATAGA-ACTCGA-AC
** * * * * *
8574042 AATCTTCGGCAAACGTGTCTGCTCCTTATTCATTCAGGGAGTATA-AGACTCGAAC
1 AATCTTC-AAAAACGGGTCCGCTCCCTATTCCTTCAAGGAGTATAGA-ACTCGAAC
* * *
8574097 AATCTTTAATAAACGGGTCCGCTCCCTATTCATTCAGGGAGTATAGAACTCAAACGAACTCAAAC
1 AATCTTCAA-AAACGGGTCCGCTCCCTATTCCTTCAAGGAGTATAGAACT----CG------AAC
* * * *
8574162 AATTTTCATAAAACGAGTCCGCTCTCTATTCATTC-AGAGAGTATAGAACTCGAAC
1 AATCTTCA-AAAACGGGTCCGCTCCCTATTCCTTCAAG-GAGTATAGAACTCGAAC
* * * * * * *
8574217 AATCTTCAGCAAATGTGTCTGCTCCCTATTCGTTCAGGGAGTATA-AGACT-TAAC
1 AATCTTCA-AAAACGGGTCCGCTCCCTATTCCTTCAAGGAGTATAGA-ACTCGAAC
* *
8574271 AATCTTCAACAAACGGGTCCGCTCTCTATTCCTTCAAAGAGTATAGAACTCGAAC
1 AATCTTCAA-AAACGGGTCCGCTCCCTATTCCTTCAAGGAGTATAGAACTCGAAC
* *
8574326 AATCTTCAACAAACGGGTCCGCTCCCTATTCTTTCAGGGAGTATAGAACTCGAAC
1 AATCTTCAA-AAACGGGTCCGCTCCCTATTCCTTCAAGGAGTATAGAACTCGAAC
*
8574381 AATCTTCAACAAACGGGTCCGCTCTCTATTCCTTC-AGAGAGTATAGAACTCGAAC
1 AATCTTCAA-AAACGGGTCCGCTCCCTATTCCTTCAAG-GAGTATAGAACTCGAAC
* * * * *
8574436 AATCTTCAACAAACGGGTCTGCTCCCTATTCATTCAGGGAGTATAGAACTCAAAA
1 AATCTTCAA-AAACGGGTCCGCTCCCTATTCCTTCAAGGAGTATAGAACTCGAAC
** * *
8574491 AATCTTCATAAAATAGGTCCGCTCTCTATTCCTTC-TGAGAGTATAGAACTCGAAC
1 AATCTTCA-AAAACGGGTCCGCTCCCTATTCCTTCAAG-GAGTATAGAACTCGAAC
*
8574546 AATCTTCAACAAACGGGTCCGCTCTCTATTCCTTC-AGAGAGTATAGAACTCGAAC
1 AATCTTCAA-AAACGGGTCCGCTCCCTATTCCTTCAAG-GAGTATAGAACTCGAAC
*
8574601 AATCTTCATAAAACGGGTCCGCTCTCTATTCCTTC-AGAGAGTATAGAACTCGAAC
1 AATCTTCA-AAAACGGGTCCGCTCCCTATTCCTTCAAG-GAGTATAGAACTCGAAC
* *
8574656 AATCTTCAACAAACAGGTCCGCTCTCTATTCCTTCA
1 AATCTTCAA-AAACGGGTCCGCTCCCTATTCCTTCA
8574692 GAGAGTACAT
Statistics
Matches: 559, Mismatches: 62, Indels: 57
0.82 0.09 0.08
Matches are distributed among these distances:
54 48 0.09
55 455 0.81
56 6 0.01
59 2 0.00
61 2 0.00
64 1 0.00
65 44 0.08
66 1 0.00
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (54 bp):
AATCTTCAAAAACGGGTCCGCTCCCTATTCCTTCAAGGAGTATAGAACTCGAAC
Found at i:8574198 original size:65 final size:65
Alignment explanation
Indices: 8574089--8574212 Score: 187
Period size: 65 Copynumber: 1.9 Consensus size: 65
8574079 GGAGTATAAG
* * *
8574089 ACTCGAACAATCTTTAATAAACGGGTCCGCTCCCTATTCATTCAGGGAGTATAGAACTCAAACGA
1 ACTCAAACAATCTTTAATAAACGAGTCCGCTCCCTATTCATTCAGAGAGTATAGAACTCAAACGA
* *
8574154 ACTCAAACAAT-TTTCATAAAACGAGTCCGCTCTCTATTCATTCAGAGAGTATAGAACTC
1 ACTCAAACAATCTTTAAT-AAACGAGTCCGCTCCCTATTCATTCAGAGAGTATAGAACTC
8574213 GAACAATCTT
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
64 5 0.09
65 48 0.91
ACGTcount: A:0.35, C:0.24, G:0.15, T:0.27
Consensus pattern (65 bp):
ACTCAAACAATCTTTAATAAACGAGTCCGCTCCCTATTCATTCAGAGAGTATAGAACTCAAACGA
Found at i:8574497 original size:165 final size:164
Alignment explanation
Indices: 8573984--8574698 Score: 798
Period size: 165 Copynumber: 4.3 Consensus size: 164
8573974 GTGATACTTG
* * * *
8573984 AAAAATCTTCAAATGACGGGTCTGCTCCCTATTCTTTCA-AGGAGTATA-AGACTCGATA-AATC
1 AAAAATCTTCAAA-AACGGGTCCGCTCTCTATTCCTTCAGA-GAGTATAGA-ACTCGA-ACAATC
** * * * * * *
8574046 TTCGGCAAACGTGTCTGCTC-CTTATTCATTCAGGGAGTATAAGACTCGAACAATCTTTAATAAA
62 TTCAACAAACGGGTCCGCTCTC-TATTCCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAAA
*
8574110 CGGGTCCGCTCCCTATTCATTCAGGGAGTATAGAACTCAAACGAA
126 CGGGTCCGCTCCCTATTCATTCAGAGAGTATAGAACT----C--A
* * *
8574155 CTCAAACAATTTTCATAAAACGAGTCCGCTCTCTATTCATTCAGAGAGTATAGAACTCGAACAAT
1 ---AAA-AATCTTCA-AAAACGGGTCCGCTCTCTATTCCTTCAGAGAGTATAGAACTCGAACAAT
* * * * * * * *
8574220 CTTCAGCAAATGTGTCTGCTCCCTATTCGTTCAGGGAGTATAAGACT-TAACAATCTTCAACAAA
61 CTTCAACAAACGGGTCCGCTCTCTATTCCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAAA
* * * *
8574284 CGGGTCCGCTCTCTATTCCTTCAAAGAGTATAGAACTCG
126 CGGGTCCGCTCCCTATTCATTCAGAGAGTATAGAACTCA
* * * *
8574323 AACAATCTTCAACAAACGGGTCCGCTCCCTATTCTTTCAGGGAGTATAGAACTCGAACAATCTTC
1 AAAAATCTTCAA-AAACGGGTCCGCTCTCTATTCCTTCAGAGAGTATAGAACTCGAACAATCTTC
8574388 AACAAACGGGTCCGCTCTCTATTCCTTCAGAGAGTAT-AGAACTCGAACAATCTTCAACAAACGG
65 AACAAACGGGTCCGCTCTCTATTCCTTCAGAGAGTATAAG-ACTCGAACAATCTTCAACAAACGG
* *
8574452 GTCTGCTCCCTATTCATTCAGGGAGTATAGAACTCA
129 GTCCGCTCCCTATTCATTCAGAGAGTATAGAACTCA
** *
8574488 AAAAATCTTCATAAAATAGGTCCGCTCTCTATTCCTTCTGAGAGTATAGAACTCGAACAATCTTC
1 AAAAATCTTCA-AAAACGGGTCCGCTCTCTATTCCTTCAGAGAGTATAGAACTCGAACAATCTTC
8574553 AACAAACGGGTCCGCTCTCTATTCCTTCAGAGAGTAT-AGAACTCGAACAATCTTCATA-AAACG
65 AACAAACGGGTCCGCTCTCTATTCCTTCAGAGAGTATAAG-ACTCGAACAATCTTCA-ACAAACG
* * *
8574616 GGTCCGCTCTCTATTCCTTCAGAGAGTATAGAACTCG
128 GGTCCGCTCCCTATTCATTCAGAGAGTATAGAACTCA
* *
8574653 AACAATCTTCAACAAACAGGTCCGCTCTCTATTCCTTCAGAGAGTA
1 AAAAATCTTCAA-AAACGGGTCCGCTCTCTATTCCTTCAGAGAGTA
8574699 CATGACTCAA
Statistics
Matches: 477, Mismatches: 52, Indels: 33
0.85 0.09 0.06
Matches are distributed among these distances:
163 3 0.01
164 89 0.19
165 241 0.51
166 2 0.00
170 1 0.00
174 51 0.11
175 85 0.18
176 5 0.01
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (164 bp):
AAAAATCTTCAAAAACGGGTCCGCTCTCTATTCCTTCAGAGAGTATAGAACTCGAACAATCTTCA
ACAAACGGGTCCGCTCTCTATTCCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAAACGGGT
CCGCTCCCTATTCATTCAGAGAGTATAGAACTCA
Found at i:8574692 original size:55 final size:55
Alignment explanation
Indices: 8574152--8574698 Score: 789
Period size: 55 Copynumber: 10.0 Consensus size: 55
8574142 GAACTCAAAC
* * * *
8574152 GAACTCAAACAATTTTCATA-AAACGAGTCCGCTCTCTATTCATTCAGAGAGTATA
1 GAACTCGAACAATCTTCA-ACAAACGGGTCCGCTCTCTATTCCTTCAGAGAGTATA
* * * * * * *
8574207 GAACTCGAACAATCTTCAGCAAATGTGTCTGCTCCCTATTCGTTCAGGGAGTATA
1 GAACTCGAACAATCTTCAACAAACGGGTCCGCTCTCTATTCCTTCAGAGAGTATA
* *
8574262 -AGACT-TAACAATCTTCAACAAACGGGTCCGCTCTCTATTCCTTCAAAGAGTATA
1 GA-ACTCGAACAATCTTCAACAAACGGGTCCGCTCTCTATTCCTTCAGAGAGTATA
* * *
8574316 GAACTCGAACAATCTTCAACAAACGGGTCCGCTCCCTATTCTTTCAGGGAGTATA
1 GAACTCGAACAATCTTCAACAAACGGGTCCGCTCTCTATTCCTTCAGAGAGTATA
8574371 GAACTCGAACAATCTTCAACAAACGGGTCCGCTCTCTATTCCTTCAGAGAGTATA
1 GAACTCGAACAATCTTCAACAAACGGGTCCGCTCTCTATTCCTTCAGAGAGTATA
* * * *
8574426 GAACTCGAACAATCTTCAACAAACGGGTCTGCTCCCTATTCATTCAGGGAGTATA
1 GAACTCGAACAATCTTCAACAAACGGGTCCGCTCTCTATTCCTTCAGAGAGTATA
* * ** *
8574481 GAACTCAAAAAATCTTCATA-AAATAGGTCCGCTCTCTATTCCTTCTGAGAGTATA
1 GAACTCGAACAATCTTCA-ACAAACGGGTCCGCTCTCTATTCCTTCAGAGAGTATA
8574536 GAACTCGAACAATCTTCAACAAACGGGTCCGCTCTCTATTCCTTCAGAGAGTATA
1 GAACTCGAACAATCTTCAACAAACGGGTCCGCTCTCTATTCCTTCAGAGAGTATA
8574591 GAACTCGAACAATCTTCATA-AAACGGGTCCGCTCTCTATTCCTTCAGAGAGTATA
1 GAACTCGAACAATCTTCA-ACAAACGGGTCCGCTCTCTATTCCTTCAGAGAGTATA
*
8574646 GAACTCGAACAATCTTCAACAAACAGGTCCGCTCTCTATTCCTTCAGAGAGTA
1 GAACTCGAACAATCTTCAACAAACGGGTCCGCTCTCTATTCCTTCAGAGAGTA
8574699 CATGACTCAA
Statistics
Matches: 439, Mismatches: 45, Indels: 16
0.88 0.09 0.03
Matches are distributed among these distances:
54 46 0.10
55 391 0.89
56 2 0.00
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (55 bp):
GAACTCGAACAATCTTCAACAAACGGGTCCGCTCTCTATTCCTTCAGAGAGTATA
Found at i:8574778 original size:37 final size:36
Alignment explanation
Indices: 8574724--8574842 Score: 157
Period size: 37 Copynumber: 3.2 Consensus size: 36
8574714 AACCAACGAG
8574724 TTTGTTTCACTACTCTTCCGTGAAGGCTTATAGATGA
1 TTTGTTTCACTACTCTTCCGTGAAGGCTTA-AGATGA
* *
8574761 TTTGTTTCACTAATCTTCCGTGAAGGCTTAAGTTTGA
1 TTTGTTTCACTACTCTTCCGTGAAGGCTTAAG-ATGA
* * *
8574798 ATTGTTTCACTGCTCTTTCGTGAAGGCTTAAGATTGA
1 TTTGTTTCACTACTCTTCCGTGAAGGCTTAAGA-TGA
*
8574835 CTTGTTTC
1 TTTGTTTC
8574843 GAAGGTCAAA
Statistics
Matches: 72, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
36 2 0.03
37 70 0.97
ACGTcount: A:0.20, C:0.18, G:0.19, T:0.43
Consensus pattern (36 bp):
TTTGTTTCACTACTCTTCCGTGAAGGCTTAAGATGA
Found at i:8576150 original size:7 final size:7
Alignment explanation
Indices: 8576136--8576179 Score: 63
Period size: 7 Copynumber: 6.4 Consensus size: 7
8576126 ATTTTTAATT
8576136 TTTC-TC
1 TTTCTTC
8576142 TTTCTTC
1 TTTCTTC
*
8576149 TTTCTTA
1 TTTCTTC
8576156 TTTCTTC
1 TTTCTTC
8576163 TTTCTTC
1 TTTCTTC
*
8576170 TTTTTTC
1 TTTCTTC
8576177 TTT
1 TTT
8576180 TTTTCTTTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
6 4 0.12
7 30 0.88
ACGTcount: A:0.02, C:0.23, G:0.00, T:0.75
Consensus pattern (7 bp):
TTTCTTC
Found at i:8576180 original size:7 final size:7
Alignment explanation
Indices: 8576115--8576190 Score: 55
Period size: 7 Copynumber: 10.6 Consensus size: 7
8576105 TGAACCCCCA
8576115 TTTT-TT
1 TTTTCTT
8576121 TTTTCATT
1 TTTTC-TT
**
8576129 TTTAATT
1 TTTTCTT
8576136 TTTCTCTT
1 TTT-TCTT
*
8576144 TCTTCTT
1 TTTTCTT
* *
8576151 TCTTATT
1 TTTTCTT
*
8576158 TCTTCTT
1 TTTTCTT
*
8576165 TCTTCTT
1 TTTTCTT
8576172 TTTTCTTT
1 TTTTC-TT
8576180 TTTTCTT
1 TTTTCTT
8576187 TTTT
1 TTTT
8576191 TTCCATTTTT
Statistics
Matches: 58, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
6 4 0.07
7 38 0.66
8 16 0.28
ACGTcount: A:0.05, C:0.16, G:0.00, T:0.79
Consensus pattern (7 bp):
TTTTCTT
Found at i:8576188 original size:14 final size:14
Alignment explanation
Indices: 8576134--8576364 Score: 89
Period size: 14 Copynumber: 15.4 Consensus size: 14
8576124 TCATTTTTAA
*
8576134 TTTTTCTCTTTC-T
1 TTTTTCTTTTTCTT
*
8576147 TCTTTCTTATTTCTT
1 TTTTTCTT-TTTCTT
8576162 CTTTCTTCTTTTTTCTT
1 -TTT-TTC-TTTTTCTT
*
8576179 TTTTTCTTTTTTTT
1 TTTTTCTTTTTCTT
*
8576193 CCATTTTTCCATTTTCATATT
1 ---TTTTT-C-TTTT--TCTT
8576214 TTTTTCTTTTTCTCTCT
1 TTTTTC-TTTT-TCT-T
* *
8576231 TTTTTCCTTTTCAT
1 TTTTTCTTTTTCTT
**
8576245 TTTTTC--CATCATT
1 TTTTTCTTTTTC-TT
*
8576258 TTTTAT-TTTTTATT
1 TTTT-TCTTTTTCTT
*
8576272 TTTTTCATTTTTC-A
1 TTTTTC-TTTTTCTT
*
8576286 TTTTTCATTTTTC-A
1 TTTTTC-TTTTTCTT
8576300 TTTTTC-TTTTCTT
1 TTTTTCTTTTTCTT
*
8576313 TTCTTCTTTTTCTTT
1 TTTTTCTTTTTC-TT
8576328 TCATTTTCTTTTTCATT
1 T--TTTTCTTTTTC-TT
*
8576345 TTTTTCATTTTCATT
1 TTTTTCTTTTTC-TT
8576360 TTTTT
1 TTTTT
8576365 ATCATTTTAT
Statistics
Matches: 171, Mismatches: 23, Indels: 46
0.71 0.10 0.19
Matches are distributed among these distances:
12 7 0.04
13 17 0.10
14 50 0.29
15 33 0.19
16 10 0.06
17 39 0.23
18 8 0.05
19 4 0.02
21 3 0.02
ACGTcount: A:0.08, C:0.17, G:0.00, T:0.75
Consensus pattern (14 bp):
TTTTTCTTTTTCTT
Found at i:8576190 original size:17 final size:17
Alignment explanation
Indices: 8576134--8576241 Score: 65
Period size: 18 Copynumber: 6.1 Consensus size: 17
8576124 TCATTTTTAA
*
8576134 TTTTTCTCTTTCTTCTTT
1 TTTTTCT-TTTTTTCTTT
*
8576152 CTTATTTC-TTCTTTCTTCT
1 -TT-TTTCTTTTTTTCTT-T
8576171 TTTTTCTTTTTTTCTTT
1 TTTTTCTTTTTTTCTTT
* * *
8576188 TTTTTCCATTTTTCCATT
1 TTTTT-CTTTTTTTCTTT
** *
8576206 TTCATATTTTTTTCTTT
1 TTTTTCTTTTTTTCTTT
* *
8576223 TTCTCTCTTTTTTCCTTT
1 TT-TTTCTTTTTTTCTTT
8576241 T
1 T
8576242 CATTTTTTCC
Statistics
Matches: 68, Mismatches: 16, Indels: 11
0.72 0.17 0.12
Matches are distributed among these distances:
17 20 0.29
18 41 0.60
19 3 0.04
20 4 0.06
ACGTcount: A:0.05, C:0.20, G:0.00, T:0.75
Consensus pattern (17 bp):
TTTTTCTTTTTTTCTTT
Found at i:8576199 original size:18 final size:18
Alignment explanation
Indices: 8576150--8576355 Score: 63
Period size: 17 Copynumber: 11.8 Consensus size: 18
8576140 TCTTTCTTCT
* *
8576150 TTCTTATTTC-TTCTTTC
1 TTCTTTTTTCATTTTTTC
*
8576167 TTCTTTTTTCTTTTTTTC
1 TTCTTTTTTCATTTTTTC
8576185 TT-TTTTTTCCA-TTTTTC
1 TTCTTTTTT-CATTTTTTC
*
8576202 --C-ATTTTCATATTTTT-
1 TTCTTTTTTCAT-TTTTTC
*
8576217 TTCTTTTTCTC-TCTTTT-
1 TTCTTTTT-TCATTTTTTC
*
8576234 TTC-CTTTTCATTTTTTCC
1 TTCTTTTTTCATTTTTT-C
*
8576252 ATCATTTTTT-ATTTTTT-
1 TTC-TTTTTTCATTTTTTC
*
8576269 AT-TTTTTTCA---TTT-
1 TTCTTTTTTCATTTTTTC
*
8576282 TTCATTTTTCA-TTTTTC
1 TTCTTTTTTCATTTTTTC
*
8576299 ATTTTTCTTTTC-TTTTCTTC
1 -TTCTT-TTTTCATTTT-TTC
* *
8576319 TTTTTCTTTTCATTTTCTTT
1 TTCTT-TTTTCATTTT-TTC
8576339 TTCATTTTTTTCATTTT
1 TTC--TTTTTTCATTTT
8576356 CATTTTTTTA
Statistics
Matches: 147, Mismatches: 16, Indels: 48
0.70 0.08 0.23
Matches are distributed among these distances:
13 4 0.03
14 9 0.06
15 12 0.08
16 17 0.12
17 31 0.21
18 18 0.12
19 28 0.19
20 16 0.11
21 10 0.07
22 2 0.01
ACGTcount: A:0.08, C:0.17, G:0.00, T:0.75
Consensus pattern (18 bp):
TTCTTTTTTCATTTTTTC
Found at i:8576217 original size:43 final size:42
Alignment explanation
Indices: 8576170--8576349 Score: 154
Period size: 43 Copynumber: 4.1 Consensus size: 42
8576160 TTCTTTCTTC
8576170 TTTTTTCTTTTTTTCTTTTTTTTCCATTTTTCCA-TTTTCATAT
1 TTTTTTCTTTTTTTCTTTTTTTTCCA-TTTT-CATTTTTCATAT
* *
8576213 TTTTTTCTTTTTCTCTCTTTTTTCC-TTTTCATTTTTTCCATCAT
1 TTTTTTCTTTTTTTCTTTTTTTTCCATTTTCA-TTTTT-CAT-AT
* * *
8576257 TTTTTAT-TTTTTATTTTTTTCATTTTTCATTTTTCATTTTTCATTT
1 TTTTT-TCTTTTT-TTCTTTT--TTTTCCA-TTTTCATTTTTCATAT
* *
8576303 TTCTTTTCTTTTCTTCTTTTTCTTTTCATTTTC-TTTTTCAT-T
1 TT-TTTTCTTTTTTTCTTTTT-TTTCCATTTTCATTTTTCATAT
8576345 TTTTT
1 TTTTT
8576350 CATTTTCATT
Statistics
Matches: 115, Mismatches: 9, Indels: 28
0.76 0.06 0.18
Matches are distributed among these distances:
40 2 0.02
41 7 0.06
42 7 0.06
43 34 0.30
44 18 0.16
45 11 0.10
46 10 0.09
47 15 0.13
48 5 0.04
49 6 0.05
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (42 bp):
TTTTTTCTTTTTTTCTTTTTTTTCCATTTTCATTTTTCATAT
Found at i:8576224 original size:34 final size:34
Alignment explanation
Indices: 8576177--8576249 Score: 96
Period size: 35 Copynumber: 2.1 Consensus size: 34
8576167 TTCTTTTTTC
*
8576177 TTTTTTTCTTTTTTTTC-CATTTTTCCATTTTCAT
1 TTTTTTTCTTTTTTCTCTCATTTTTCC-TTTTCAT
*
8576211 ATTTTTTTC-TTTTTCTCTCTTTTTTCCTTTTCAT
1 -TTTTTTTCTTTTTTCTCTCATTTTTCCTTTTCAT
8576245 TTTTT
1 TTTTT
8576250 CCATCATTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
33 5 0.14
34 14 0.40
35 16 0.46
ACGTcount: A:0.07, C:0.18, G:0.00, T:0.75
Consensus pattern (34 bp):
TTTTTTTCTTTTTTCTCTCATTTTTCCTTTTCAT
Found at i:8576258 original size:60 final size:56
Alignment explanation
Indices: 8576156--8576304 Score: 135
Period size: 58 Copynumber: 2.6 Consensus size: 56
8576146 TTCTTTCTTA
* * *
8576156 TTTCTTCTTTCTTCTTTTTTCTTTTTTTCTTTTTTTTCCATTTTTCCATTTTCATATTTT
1 TTTCTT-TTTCTTCTTTTTTC-TCTTTTCATTTTTTCCCATTTTT-CATTTT-ATATTTT
* *
8576216 TTTCTTTTTCTCTCTTTTTTC-CTTTTCATTTTTTCCATCATTTTTTATTTTTTATTTT
1 TTTCTTTTTCT-TCTTTTTTCTCTTTTCATTTTTTCC--CATTTTTCATTTTATATTTT
* *
8576274 TTTC-ATTT-TTCATTTTTCAT-TTTTCATTTTT
1 TTTCTTTTTCTTCTTTTTTC-TCTTTTCATTTTT
8576305 CTTTTCTTTT
Statistics
Matches: 77, Mismatches: 7, Indels: 14
0.79 0.07 0.14
Matches are distributed among these distances:
55 8 0.10
56 12 0.16
57 3 0.04
58 22 0.29
59 10 0.13
60 22 0.29
ACGTcount: A:0.09, C:0.17, G:0.00, T:0.74
Consensus pattern (56 bp):
TTTCTTTTTCTTCTTTTTTCTCTTTTCATTTTTTCCCATTTTTCATTTTATATTTT
Found at i:8576265 original size:7 final size:7
Alignment explanation
Indices: 8576253--8576382 Score: 93
Period size: 7 Copynumber: 19.3 Consensus size: 7
8576243 ATTTTTTCCA
8576253 TCATTTT
1 TCATTTT
*
8576260 TTATTTT
1 TCATTTT
*
8576267 TTATTTTTT
1 TCA--TTTT
8576276 TCATTTT
1 TCATTTT
8576283 TCATTTT
1 TCATTTT
8576290 TCATTTT
1 TCATTTT
8576297 TCATTTT
1 TCATTTT
8576304 TC--TTT
1 TCATTTT
*
8576309 TCTTTTCT
1 TCATTT-T
8576317 TC-TTTT
1 TCATTTT
8576323 TC--TTT
1 TCATTTT
8576328 TCA-TTT
1 TCATTTT
8576334 TC-TTTT
1 TCATTTT
8576340 TCATTTTTT
1 TCA--TTTT
8576349 TCA-TTT
1 TCATTTT
8576355 TCA-TTT
1 TCATTTT
*
8576361 T--TTTA
1 TCATTTT
8576366 TCATTTT
1 TCATTTT
8576373 ATCATTTT
1 -TCATTTT
8576381 TC
1 TC
8576383 TTCAAGCGAA
Statistics
Matches: 105, Mismatches: 4, Indels: 28
0.77 0.03 0.20
Matches are distributed among these distances:
5 13 0.12
6 23 0.22
7 46 0.44
8 10 0.10
9 13 0.12
ACGTcount: A:0.12, C:0.14, G:0.00, T:0.75
Consensus pattern (7 bp):
TCATTTT
Found at i:8576275 original size:9 final size:9
Alignment explanation
Indices: 8576238--8576355 Score: 50
Period size: 7 Copynumber: 14.1 Consensus size: 9
8576228 TCTTTTTTCC
8576238 TTTTCATTT
1 TTTTCATTT
*
8576247 TTTCCATCATT
1 TTTTCAT--TT
8576258 TTTT-A-TT
1 TTTTCATTT
8576265 TTTT-ATTT
1 TTTTCATTT
8576273 TTTTCA--T
1 TTTTCATTT
8576280 TTTTCA--T
1 TTTTCATTT
8576287 TTTTCA--T
1 TTTTCATTT
8576294 TTTTCATTT
1 TTTTCATTT
*
8576303 TTCTT--TTC
1 TT-TTCATTT
8576311 TTTTC-TTCT
1 TTTTCATT-T
8576320 TTTTC-TTT
1 TTTTCATTT
*
8576328 TCATTT--TCT
1 T--TTTCATTT
8576337 TTTTCATTT
1 TTTTCATTT
8576346 TTTTCATTT
1 TTTTCATTT
8576355 T
1 T
8576356 CATTTTTTTA
Statistics
Matches: 90, Mismatches: 6, Indels: 26
0.74 0.05 0.21
Matches are distributed among these distances:
7 33 0.37
8 14 0.16
9 32 0.36
10 6 0.07
11 5 0.06
ACGTcount: A:0.10, C:0.14, G:0.00, T:0.75
Consensus pattern (9 bp):
TTTTCATTT
Found at i:8576311 original size:5 final size:5
Alignment explanation
Indices: 8576301--8576361 Score: 54
Period size: 5 Copynumber: 11.8 Consensus size: 5
8576291 CATTTTTCAT
* *
8576301 TTTTC TTTTC TTTTC TTCT- TTTTC TTTTC ATTTTC TTTTTC ATTT- TTTTC
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC -TTTTC -TTTTC TTTTC TTTTC
8576351 ATTTTC ATTTT
1 -TTTTC -TTTT
8576362 TTTATCATTT
Statistics
Matches: 47, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
4 6 0.13
5 21 0.45
6 20 0.43
ACGTcount: A:0.07, C:0.16, G:0.00, T:0.77
Consensus pattern (5 bp):
TTTTC
Found at i:8576322 original size:19 final size:20
Alignment explanation
Indices: 8576265--8576337 Score: 78
Period size: 19 Copynumber: 3.6 Consensus size: 20
8576255 ATTTTTTATT
* *
8576265 TTTTATTTTTTTCATTTTTC
1 TTTTCTTTTCTTCATTTTTC
*
8576285 ATTTTTCATTT-TTCATTTTTC
1 --TTTTCTTTTCTTCATTTTTC
8576306 TTTTCTTTTCTTC-TTTTTC
1 TTTTCTTTTCTTCATTTTTC
8576325 TTTTCATTTTCTT
1 TTTTC-TTTTCTT
8576338 TTTCATTTTT
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
19 19 0.41
20 10 0.22
21 10 0.22
22 7 0.15
ACGTcount: A:0.08, C:0.15, G:0.00, T:0.77
Consensus pattern (20 bp):
TTTTCTTTTCTTCATTTTTC
Found at i:8576322 original size:25 final size:26
Alignment explanation
Indices: 8576272--8576382 Score: 74
Period size: 26 Copynumber: 4.2 Consensus size: 26
8576262 ATTTTTTATT
8576272 TTTTTCATTTTTCATTTTTCA-TTTTTCA
1 TTTTTCA-TTTTC--TTTTCATTTTTTCA
* *
8576300 TTTTTCTTTTCTTTTCTTC--TTTTTC-
1 TTTTTCATTT-TCTT-TTCATTTTTTCA
8576325 -TTTTCATTTTCTTTTTCATTTTTTTCA
1 TTTTTCATTTTC-TTTTCA-TTTTTTCA
*
8576352 -TTTTCATTTT-TTTATCATTTTATCA
1 TTTTTCATTTTCTTT-TCATTTTTTCA
8576377 TTTTTC
1 TTTTTC
8576383 TTCAAGCGAA
Statistics
Matches: 69, Mismatches: 5, Indels: 20
0.73 0.05 0.21
Matches are distributed among these distances:
23 4 0.06
24 10 0.14
25 10 0.14
26 22 0.32
27 16 0.23
28 7 0.10
ACGTcount: A:0.11, C:0.15, G:0.00, T:0.74
Consensus pattern (26 bp):
TTTTTCATTTTCTTTTCATTTTTTCA
Found at i:8576369 original size:26 final size:26
Alignment explanation
Indices: 8576293--8576380 Score: 96
Period size: 26 Copynumber: 3.4 Consensus size: 26
8576283 TCATTTTTCA
8576293 TTTTTCATTTTTC-TTTTCTTTTC-TT
1 TTTTTCA-TTTTCATTTTCTTTTCATT
8576318 CTTTTTC-TTTTCATTTTCTTTTTCATT
1 -TTTTTCATTTTCATTTTC-TTTTCATT
8576345 TTTTTCATTTTCATTTT-TTTATCA-T
1 TTTTTCATTTTCATTTTCTTT-TCATT
*
8576370 TTTATCATTTT
1 TTTTTCATTTT
8576381 TCTTCAAGCG
Statistics
Matches: 56, Mismatches: 1, Indels: 11
0.82 0.01 0.16
Matches are distributed among these distances:
24 5 0.09
25 19 0.34
26 20 0.36
27 12 0.21
ACGTcount: A:0.10, C:0.15, G:0.00, T:0.75
Consensus pattern (26 bp):
TTTTTCATTTTCATTTTCTTTTCATT
Found at i:8576372 original size:17 final size:15
Alignment explanation
Indices: 8576196--8576364 Score: 90
Period size: 17 Copynumber: 11.4 Consensus size: 15
8576186 TTTTTTTCCA
*
8576196 TTTTTCCATTTTCATAT
1 TTTTTTCATTTTC--AT
* *
8576213 TTTTTTCTTTTTCTCT
1 TTTTTTCATTTTC-AT
*
8576229 CTTTTTTCCTTTTCAT
1 -TTTTTTCATTTTCAT
*
8576245 TTTTTCCA---TCA-
1 TTTTTTCATTTTCAT
*
8576256 TTTTTT-ATTTTTTAT
1 TTTTTTCA-TTTTCAT
8576271 TTTTTTCATTTTTCA-
1 TTTTTTCA-TTTTCAT
8576286 -TTTTTCATTTTTCA-
1 TTTTTTCA-TTTTCAT
8576300 -TTTTTC-TTTTC-T
1 TTTTTTCATTTTCAT
* * *
8576312 TTTCTTCTTTTTCTT
1 TTTTTTCATTTTCAT
*
8576327 TTCATTTTCTTTTTCAT
1 TT--TTTTCATTTTCAT
8576344 TTTTTTCATTTTCAT
1 TTTTTTCATTTTCAT
8576359 TTTTTT
1 TTTTTT
8576365 ATCATTTTAT
Statistics
Matches: 125, Mismatches: 14, Indels: 28
0.75 0.08 0.17
Matches are distributed among these distances:
10 1 0.01
11 5 0.04
12 8 0.06
13 5 0.04
14 27 0.22
15 33 0.26
16 10 0.08
17 36 0.29
ACGTcount: A:0.09, C:0.16, G:0.00, T:0.75
Consensus pattern (15 bp):
TTTTTTCATTTTCAT
Found at i:8576380 original size:17 final size:17
Alignment explanation
Indices: 8576336--8576381 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
8576326 TTTCATTTTC
*
8576336 TTTT-TCATTTTTTTCA
1 TTTTATCATTTTTATCA
*
8576352 TTTTCAT-TTTTTTATCA
1 TTTT-ATCATTTTTATCA
8576369 TTTTATCATTTTT
1 TTTTATCATTTTT
8576382 CTTCAAGCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
16 6 0.25
17 17 0.71
18 1 0.04
ACGTcount: A:0.15, C:0.11, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTTATCATTTTTATCA
Found at i:8576382 original size:26 final size:27
Alignment explanation
Indices: 8576264--8576380 Score: 88
Period size: 25 Copynumber: 4.5 Consensus size: 27
8576254 CATTTTTTAT
** *
8576264 TTTTTATTTTTTTCATTTTTCATTTTTCA
1 TTTTTATCATTTTCA-TTTTC-TTTATCA
8576293 -TTTT-TCATTTTTC-TTTTCTTT-TC-
1 TTTTTATCA-TTTTCATTTTCTTTATCA
* *
8576316 TTCTTTTTC-TTTTCATTTTCTTTTTCA
1 TT-TTTATCATTTTCATTTTCTTTATCA
*
8576343 TTTTTTTCATTTTCATTTT-TTTATCA
1 TTTTTATCATTTTCATTTTCTTTATCA
8576369 -TTTTATCATTTT
1 TTTTTATCATTTT
8576381 TCTTCAAGCG
Statistics
Matches: 76, Mismatches: 4, Indels: 20
0.76 0.04 0.20
Matches are distributed among these distances:
24 8 0.11
25 25 0.33
26 21 0.28
27 13 0.17
28 9 0.12
ACGTcount: A:0.11, C:0.14, G:0.00, T:0.75
Consensus pattern (27 bp):
TTTTTATCATTTTCATTTTCTTTATCA
Found at i:8585212 original size:50 final size:49
Alignment explanation
Indices: 8585126--8585271 Score: 124
Period size: 45 Copynumber: 3.0 Consensus size: 49
8585116 GCTTTATCAG
* ** *
8585126 ATCCTACCCAACATGATATCT-ACCCCCATGCTTTGTTATTCACAAAAAGAA
1 ATCCTAACC-ACATGATATCTAATTCGCATGC-TTGTTATTC-CAAAAAGAA
* *
8585177 ATCCTAACCACATGATATCTAATTCGCATGCTTG---TTCGAAAAATAA
1 ATCCTAACCACATGATATCTAATTCGCATGCTTGTTATTCCAAAAAGAA
* * * *
8585223 AT-CTAACCGCATGATATCTAGTTCGCATGCAT-TTATTCGAAAAACGAA
1 ATCCTAACCACATGATATCTAATTCGCATGCTTGTTATTCCAAAAA-GAA
8585271 A
1 A
8585272 AATAAATGAC
Statistics
Matches: 80, Mismatches: 10, Indels: 13
0.78 0.10 0.13
Matches are distributed among these distances:
45 27 0.34
46 9 0.11
47 12 0.15
48 3 0.04
50 14 0.17
51 15 0.19
ACGTcount: A:0.36, C:0.24, G:0.11, T:0.29
Consensus pattern (49 bp):
ATCCTAACCACATGATATCTAATTCGCATGCTTGTTATTCCAAAAAGAA
Found at i:8585236 original size:45 final size:47
Alignment explanation
Indices: 8585169--8585271 Score: 138
Period size: 45 Copynumber: 2.2 Consensus size: 47
8585159 TGTTATTCAC
*
8585169 AAAAAGAAATCCTAACCACATGATATCTAATTCGCATGC-TTGTTCG
1 AAAAAGAAATCCTAACCACATGATATCTAATTCGCATGCATTATTCG
* * *
8585215 AAAAATAAAT-CTAACCGCATGATATCTAGTTCGCATGCATTTATTCG
1 AAAAAGAAATCCTAACCACATGATATCTAATTCGCATGCA-TTATTCG
8585262 AAAAACGAAA
1 AAAAA-GAAA
8585272 AATAAATGAC
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
45 26 0.53
46 9 0.18
47 11 0.22
48 3 0.06
ACGTcount: A:0.41, C:0.19, G:0.13, T:0.27
Consensus pattern (47 bp):
AAAAAGAAATCCTAACCACATGATATCTAATTCGCATGCATTATTCG
Found at i:8598642 original size:66 final size:66
Alignment explanation
Indices: 8598560--8598692 Score: 230
Period size: 66 Copynumber: 2.0 Consensus size: 66
8598550 AAACCAACCA
* *
8598560 AACACAAAATACAACATTTCCAGTAATCCTATTCCCTGGTAATATTTTATTCTCACTTGTAATCT
1 AACACAAAATACAACATTTCCAGTAATCCTATTCCCTGATAATATTTTATTCTCACTGGTAATCT
8598625 T
66 T
* *
8598626 AACACAAAATACAACATTTCTAGTAGTCCTATTCCCTGATAATATTTTATTCTCACTGGTAATCT
1 AACACAAAATACAACATTTCCAGTAATCCTATTCCCTGATAATATTTTATTCTCACTGGTAATCT
8598691 T
66 T
8598692 A
1 A
8598693 CATTCCGTGA
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
66 63 1.00
ACGTcount: A:0.34, C:0.22, G:0.07, T:0.38
Consensus pattern (66 bp):
AACACAAAATACAACATTTCCAGTAATCCTATTCCCTGATAATATTTTATTCTCACTGGTAATCT
T
Found at i:8599892 original size:25 final size:24
Alignment explanation
Indices: 8599846--8599900 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 24
8599836 TTATTCAAAC
**
8599846 TTTATAAATTTGAACTTGATTTGAA
1 TTTA-AAATTTGAACTAAATTTGAA
8599871 TTTAAAATTTGAACTAAAATTTGAA
1 TTTAAAATTTGAACT-AAATTTGAA
*
8599896 ATTAA
1 TTTAA
8599901 TTTAAAATTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
24 11 0.42
25 15 0.58
ACGTcount: A:0.44, C:0.04, G:0.09, T:0.44
Consensus pattern (24 bp):
TTTAAAATTTGAACTAAATTTGAA
Found at i:8611436 original size:21 final size:21
Alignment explanation
Indices: 8611412--8611452 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
8611402 TTAGCTAGGT
8611412 GGTTAGTCTGTTAATAGAAGA
1 GGTTAGTCTGTTAATAGAAGA
8611433 GGTTAGTCTGTTAATAGAAG
1 GGTTAGTCTGTTAATAGAAG
8611453 TTGGTGAGCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.32, C:0.05, G:0.29, T:0.34
Consensus pattern (21 bp):
GGTTAGTCTGTTAATAGAAGA
Found at i:8612228 original size:23 final size:23
Alignment explanation
Indices: 8612178--8612238 Score: 88
Period size: 23 Copynumber: 2.7 Consensus size: 23
8612168 AACTCGTATC
* *
8612178 ATTGCACCGAAGTG-CACGTTGA
1 ATTGCACCGTAGTGCCACGTAGA
*
8612200 ATTGCACCGTAGTGCCGCGTAGA
1 ATTGCACCGTAGTGCCACGTAGA
8612223 ATTGCACCGTAGTGCC
1 ATTGCACCGTAGTGCC
8612239 TTATAATAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
22 13 0.37
23 22 0.63
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.23
Consensus pattern (23 bp):
ATTGCACCGTAGTGCCACGTAGA
Found at i:8616082 original size:21 final size:21
Alignment explanation
Indices: 8616058--8616098 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
8616048 TTAGCTAGGT
8616058 GGTTAGTCTGTTAATAGAAGA
1 GGTTAGTCTGTTAATAGAAGA
8616079 GGTTAGTCTGTTAATAGAAG
1 GGTTAGTCTGTTAATAGAAG
8616099 TTGGTGAGCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.32, C:0.05, G:0.29, T:0.34
Consensus pattern (21 bp):
GGTTAGTCTGTTAATAGAAGA
Found at i:8623410 original size:65 final size:66
Alignment explanation
Indices: 8623301--8623433 Score: 214
Period size: 65 Copynumber: 2.0 Consensus size: 66
8623291 TCATGCATGG
* * *
8623301 GTGACGAATGAAAAAAATATTATTATGAAGTTTCTTATATATATTTACGTTTTCTTACAAGTTTT
1 GTGACGAATGAAAAAAATATAATTATGAAGTTTCATATACATATTTACGTTTTCTTACAAGTTTT
8623366 A
66 A
* *
8623367 GTGACGAATG-AATATATATAATTATGAAGTTTCATATACATATTTACGTTTTCTTACAAGTTTT
1 GTGACGAATGAAAAAAATATAATTATGAAGTTTCATATACATATTTACGTTTTCTTACAAGTTTT
8623431 A
66 A
8623432 GT
1 GT
8623434 TTTTAAACTG
Statistics
Matches: 62, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
65 52 0.84
66 10 0.16
ACGTcount: A:0.35, C:0.08, G:0.13, T:0.44
Consensus pattern (66 bp):
GTGACGAATGAAAAAAATATAATTATGAAGTTTCATATACATATTTACGTTTTCTTACAAGTTTT
A
Found at i:8628569 original size:31 final size:32
Alignment explanation
Indices: 8628528--8628601 Score: 96
Period size: 31 Copynumber: 2.3 Consensus size: 32
8628518 ATGACACATC
*
8628528 ATTATTTTAAATAATATAATAT-TATCATATA
1 ATTACTTTAAATAATATAATATATATCATATA
* *
8628559 ATTACTTTAAATAATATGATATATATTATATA
1 ATTACTTTAAATAATATAATATATATCATATA
* *
8628591 ATCACATTAAA
1 ATTACTTTAAA
8628602 GGGATGTTGA
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
31 20 0.54
32 17 0.46
ACGTcount: A:0.49, C:0.05, G:0.01, T:0.45
Consensus pattern (32 bp):
ATTACTTTAAATAATATAATATATATCATATA
Found at i:8628601 original size:32 final size:31
Alignment explanation
Indices: 8628534--8628601 Score: 91
Period size: 32 Copynumber: 2.2 Consensus size: 31
8628524 CATCATTATT
* *
8628534 TTAAATAATATAATATTATCATATAATTACT
1 TTAAATAATATAATATTATCATATAATCACA
* *
8628565 TTAAATAATATGATATATATTATATAATCACA
1 TTAAATAATATAATAT-TATCATATAATCACA
8628597 TTAAA
1 TTAAA
8628602 GGGATGTTGA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
31 15 0.47
32 17 0.53
ACGTcount: A:0.50, C:0.06, G:0.01, T:0.43
Consensus pattern (31 bp):
TTAAATAATATAATATTATCATATAATCACA
Found at i:8630105 original size:23 final size:24
Alignment explanation
Indices: 8630063--8630107 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
8630053 AAAAACTAAG
*
8630063 AAAACAAAAATAATATAATAGAGT
1 AAAACAAAAATAATAAAATAGAGT
*
8630087 AAAAGAAAAATAA-AAAATAGA
1 AAAACAAAAATAATAAAATAGA
8630108 TGAACACCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 7 0.37
24 12 0.63
ACGTcount: A:0.73, C:0.02, G:0.09, T:0.16
Consensus pattern (24 bp):
AAAACAAAAATAATAAAATAGAGT
Found at i:8643604 original size:22 final size:23
Alignment explanation
Indices: 8643570--8643623 Score: 56
Period size: 22 Copynumber: 2.4 Consensus size: 23
8643560 TTTTGTTAGG
**
8643570 TTTTTTTTGTTAACATAAAAG-A
1 TTTTTTTACTTAACATAAAAGTA
**
8643592 TTTTTTTACTTAATTTAAAAGTA
1 TTTTTTTACTTAACATAAAAGTA
*
8643615 TATTTTTAC
1 TTTTTTTAC
8643624 CATCTAGAAC
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
22 17 0.65
23 9 0.35
ACGTcount: A:0.33, C:0.06, G:0.06, T:0.56
Consensus pattern (23 bp):
TTTTTTTACTTAACATAAAAGTA
Found at i:8646196 original size:4 final size:4
Alignment explanation
Indices: 8646189--8646215 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
8646179 CAGTAAGTAT
8646189 ATAC ATAC ATAC ATAC ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATA
8646216 TATATATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.52, C:0.22, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:8646220 original size:2 final size:2
Alignment explanation
Indices: 8646213--8646246 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
8646203 ACATACATAC
8646213 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8646247 TTACACCCTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8648281 original size:15 final size:16
Alignment explanation
Indices: 8648261--8648290 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8648251 GACTTTAACT
8648261 AATTAA-ATTATTTTA
1 AATTAATATTATTTTA
8648276 AATTAATATTATTTT
1 AATTAATATTATTTT
8648291 TAATATTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (16 bp):
AATTAATATTATTTTA
Found at i:8649661 original size:18 final size:18
Alignment explanation
Indices: 8649638--8649673 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
8649628 GGGGGCTTCG
*
8649638 GTAAAATGAAATTAAATA
1 GTAAAAAGAAATTAAATA
*
8649656 GTAAAAAGAGATTAAATA
1 GTAAAAAGAAATTAAATA
8649674 AATAAAGCCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.61, C:0.00, G:0.14, T:0.25
Consensus pattern (18 bp):
GTAAAAAGAAATTAAATA
Found at i:8650358 original size:28 final size:28
Alignment explanation
Indices: 8650295--8650376 Score: 67
Period size: 28 Copynumber: 2.8 Consensus size: 28
8650285 AAAACTTAAA
* *
8650295 AATAAAATAAAAATGGAAAATGAAAACTTT
1 AATAAAAT-AAAATAGAAGA-GAAAACTTT
* *
8650325 GA-AAAATAAAATAGAAGAGAAAGCTTT
1 AATAAAATAAAATAGAAGAGAAAACTTT
*
8650352 AATAAAACTATAAAGAAGAAGAGAA
1 AATAAAA-TA-AAA-TAGAAGAGAA
8650377 TTGTAATTTG
Statistics
Matches: 42, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
27 9 0.21
28 13 0.31
29 7 0.17
30 4 0.10
31 9 0.21
ACGTcount: A:0.63, C:0.04, G:0.15, T:0.18
Consensus pattern (28 bp):
AATAAAATAAAATAGAAGAGAAAACTTT
Found at i:8651349 original size:8 final size:7
Alignment explanation
Indices: 8651337--8651379 Score: 50
Period size: 8 Copynumber: 5.7 Consensus size: 7
8651327 CTTTTTCACA
8651337 TTTTTGT
1 TTTTTGT
8651344 TGTTTTGT
1 T-TTTTGT
*
8651352 TTTTTTT
1 TTTTTGT
8651359 TTTTTGT
1 TTTTTGT
8651366 CTTTTTGT
1 -TTTTTGT
8651374 CTTTTT
1 -TTTTT
8651380 TTTCAAACAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
7 12 0.38
8 20 0.62
ACGTcount: A:0.00, C:0.05, G:0.12, T:0.84
Consensus pattern (7 bp):
TTTTTGT
Found at i:8651362 original size:22 final size:22
Alignment explanation
Indices: 8651337--8651382 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
8651327 CTTTTTCACA
*
8651337 TTTTTGT-TGTTTTGTTTTTTTT
1 TTTTTGTCT-TTTTGTCTTTTTT
8651359 TTTTTGTCTTTTTGTCTTTTTT
1 TTTTTGTCTTTTTGTCTTTTTT
8651381 TT
1 TT
8651383 CAAACAACAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 21 0.95
23 1 0.05
ACGTcount: A:0.00, C:0.04, G:0.11, T:0.85
Consensus pattern (22 bp):
TTTTTGTCTTTTTGTCTTTTTT
Found at i:8653189 original size:54 final size:54
Alignment explanation
Indices: 8653105--8653218 Score: 142
Period size: 54 Copynumber: 2.1 Consensus size: 54
8653095 AGGAGTCAAG
* **
8653105 GGTATCGGTACCATATGAGGGTATTGGTACCCTATT-TCGATTCTGTTTTCCCAC
1 GGTATCGATACCATATGAGGGTATCAGTACCCTATTGT-GATTCTGTTTTCCCAC
* * *
8653159 GGTATCGATACCATCA-GGGGGTATCAGTACCCTATTGTGATTTTGTTTTCTCAC
1 GGTATCGATACCAT-ATGAGGGTATCAGTACCCTATTGTGATTCTGTTTTCCCAC
8653213 GGTATC
1 GGTATC
8653219 CCATTGTGAT
Statistics
Matches: 52, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
54 50 0.96
55 2 0.04
ACGTcount: A:0.19, C:0.21, G:0.23, T:0.37
Consensus pattern (54 bp):
GGTATCGATACCATATGAGGGTATCAGTACCCTATTGTGATTCTGTTTTCCCAC
Found at i:8657525 original size:24 final size:24
Alignment explanation
Indices: 8657493--8657548 Score: 103
Period size: 24 Copynumber: 2.3 Consensus size: 24
8657483 CTATTCTTTC
8657493 GCTTCAATTGAGCTCAAATTTTAG
1 GCTTCAATTGAGCTCAAATTTTAG
8657517 GCTTCAATTGAGCTCAAATTTTAG
1 GCTTCAATTGAGCTCAAATTTTAG
*
8657541 GTTTCAAT
1 GCTTCAAT
8657549 CGAACTTCTA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.39
Consensus pattern (24 bp):
GCTTCAATTGAGCTCAAATTTTAG
Found at i:8661412 original size:19 final size:18
Alignment explanation
Indices: 8661380--8661431 Score: 52
Period size: 19 Copynumber: 2.8 Consensus size: 18
8661370 TAACTTAATT
* *
8661380 AAAAT-ATTTTAAATTTA
1 AAAATAATTTAAAATCTA
8661397 GAAAATAATTTAAAATCTA
1 -AAAATAATTTAAAATCTA
8661416 AAATATAATTTTAAAA
1 AAA-ATAA-TTTAAAA
8661432 CGTTTGATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
18 8 0.28
19 14 0.48
20 7 0.24
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (18 bp):
AAAATAATTTAAAATCTA
Found at i:8664826 original size:3 final size:3
Alignment explanation
Indices: 8664818--8664902 Score: 152
Period size: 3 Copynumber: 28.3 Consensus size: 3
8664808 ATGTAAATTA
8664818 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* *
8664866 AAT AAT AAT AAT AAT AAT AAT AAT AAC GAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
8664903 TACAAAAAAA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 78 1.00
ACGTcount: A:0.66, C:0.01, G:0.01, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:8665253 original size:88 final size:88
Alignment explanation
Indices: 8665055--8665641 Score: 508
Period size: 88 Copynumber: 6.9 Consensus size: 88
8665045 TTGGTTGTTG
* * * * * * *
8665055 GGGATGCCACTGCTCATACGTGATGAAGAGTTCGGGTCGTCTAAGG-G-TGACATGGTTCCTACG
1 GGGATGACACGGCTCATACGTGATGAAGAGTTCTGGCCATCTAAGGTGATAACACGGTTCCTACG
*** * *
8665118 TGATGAGGAAATCTAG---TCGA
66 TGATGAGGACGGCTGGTTATCTA
* * *
8665138 GGGTTGACACTGCTCATACGTGATGAAGAGTTCTGGCCATCTAAAGGTGATAACATGGTTCCTAC
1 GGGATGACACGGCTCATACGTGATGAAGAGTTCTGGCCATCT-AAGGTGATAACACGGTTCCTAC
8665203 GTGATGAGGACGGCTGGTTATCTA
65 GTGATGAGGACGGCTGGTTATCTA
8665227 GGG-TGACACGGCTCATACGTGATGAAGAGTTCTGGCCATCTAAAGGTGATAACACGGTTCCTAC
1 GGGATGACACGGCTCATACGTGATGAAGAGTTCTGGCCATCT-AAGGTGATAACACGGTTCCTAC
8665291 GTGATGAGGACGGCTGGTTATCTA
65 GTGATGAGGACGGCTGGTTATCTA
* * * *
8665315 GGG-TGACACGGCTCATACGTGATGAAGAGATCTGG---TCT--GGGGATGACACGATTCCTACG
1 GGGATGACACGGCTCATACGTGATGAAGAGTTCTGGCCATCTAAGGTGATAACACGGTTCCTACG
* **
8665374 TGATGAGGACGGTTGGCCATCTAAA
66 TGATGAGGACGGCTGGTTATCT--A
* * * * * ** * * *
8665399 GGTGATAACACGGTTCCTACGTGATGAGGACG-GCTGGTTATCT-AGG-G-TGACACGGCTCATA
1 GG-GATGACACGGCTCATACGTGATGAAGA-GTTCTGGCCATCTAAGGTGATAACACGGTTCCTA
* * *
8665460 CGTGATGAAGA-GATCTGG---TCTG
64 CGTGATGAGGACG-GCTGGTTATCTA
** * * *
8665482 GGGATGACACGATTCCTACGTGATGAGGACGGT-TGGCCATCTAAAGGTGATAACACGGTTCCTA
1 GGGATGACACGGCTCATACGTGATGAAGA-GTTCTGGCCATCT-AAGGTGATAACACGGTTCCTA
8665546 CGTGATGAGGACGGCTGGTTATCTA
64 CGTGATGAGGACGGCTGGTTATCTA
* * * *
8665571 GGG-TGACACGGCTCATACGTGATGAAGAGATCTGG---TCT--GGGGATGACACGATTCCTACG
1 GGGATGACACGGCTCATACGTGATGAAGAGTTCTGGCCATCTAAGGTGATAACACGGTTCCTACG
8665630 TGATGAGGACGG
66 TGATGAGGACGG
8665642 TTGGCCATCT
Statistics
Matches: 427, Mismatches: 51, Indels: 53
0.80 0.10 0.10
Matches are distributed among these distances:
82 101 0.24
83 39 0.09
84 10 0.02
85 12 0.03
86 77 0.18
87 5 0.01
88 165 0.39
89 16 0.04
90 2 0.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (88 bp):
GGGATGACACGGCTCATACGTGATGAAGAGTTCTGGCCATCTAAGGTGATAACACGGTTCCTACG
TGATGAGGACGGCTGGTTATCTA
Found at i:8665362 original size:128 final size:128
Alignment explanation
Indices: 8665242--8665656 Score: 787
Period size: 128 Copynumber: 3.2 Consensus size: 128
8665232 ACACGGCTCA
* *
8665242 TACGTGATGAAGA-GTTCTGGCCATCTAAAGGTGATAACACGGTTCCTACGTGATGAGGACGGCT
1 TACGTGATGAGGACGGT-TGGCCATCTAAAGGTGATAACACGGTTCCTACGTGATGAGGACGGCT
8665306 GGTTATCTAGGGTGACACGGCTCATACGTGATGAAGAGATCTGGTCTGGGGATGACACGATTCC
65 GGTTATCTAGGGTGACACGGCTCATACGTGATGAAGAGATCTGGTCTGGGGATGACACGATTCC
8665370 TACGTGATGAGGACGGTTGGCCATCTAAAGGTGATAACACGGTTCCTACGTGATGAGGACGGCTG
1 TACGTGATGAGGACGGTTGGCCATCTAAAGGTGATAACACGGTTCCTACGTGATGAGGACGGCTG
8665435 GTTATCTAGGGTGACACGGCTCATACGTGATGAAGAGATCTGGTCTGGGGATGACACGATTCC
66 GTTATCTAGGGTGACACGGCTCATACGTGATGAAGAGATCTGGTCTGGGGATGACACGATTCC
8665498 TACGTGATGAGGACGGTTGGCCATCTAAAGGTGATAACACGGTTCCTACGTGATGAGGACGGCTG
1 TACGTGATGAGGACGGTTGGCCATCTAAAGGTGATAACACGGTTCCTACGTGATGAGGACGGCTG
8665563 GTTATCTAGGGTGACACGGCTCATACGTGATGAAGAGATCTGGTCTGGGGATGACACGATTCC
66 GTTATCTAGGGTGACACGGCTCATACGTGATGAAGAGATCTGGTCTGGGGATGACACGATTCC
*
8665626 TACGTGATGAGGACGGTTGGCCATCTTAAGG
1 TACGTGATGAGGACGGTTGGCCATCTAAAGG
8665657 AATTATGGTT
Statistics
Matches: 283, Mismatches: 3, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
128 281 0.99
129 2 0.01
ACGTcount: A:0.24, C:0.19, G:0.33, T:0.25
Consensus pattern (128 bp):
TACGTGATGAGGACGGTTGGCCATCTAAAGGTGATAACACGGTTCCTACGTGATGAGGACGGCTG
GTTATCTAGGGTGACACGGCTCATACGTGATGAAGAGATCTGGTCTGGGGATGACACGATTCC
Found at i:8665580 original size:216 final size:212
Alignment explanation
Indices: 8665114--8665641 Score: 585
Period size: 216 Copynumber: 2.5 Consensus size: 212
8665104 ACATGGTTCC
* * * * * * *
8665114 TACGTGATGAGGAAATCTAGTCGAGGGTTGACACTG-CTCATACGTGATGAAGAGTTCTGGCCAT
1 TACGTGATGAAGAGAGCTGGTCTAGGGATGACAC-GACTCATACGTGATGAAGAGGTCTGGCCAT
*
8665178 CTAAAGGTGATAACATGGTTCCTACGTGATGAGGACGGCTGGTTATCTAGGGTGACACGGCTCAT
65 CTAAAGGTGATAACACGGTTCCTACGTGATGAGGACGGCTGGTTATCTAGGGTGACACGGCTCAT
* * *
8665243 ACGTGATGAAGAGTTCTGGCCATCTAAAGGTGATAACACGGTTCCTACGTGATGAGGACGGCTGG
130 ACGTGATGAAGAGATCTGG-C-TCT--AGGGGATAACACGATTCCTACGTGATGAGGACGGCTGG
** *
8665308 TTATCTAGGGTGACACGGCTCA
191 CCATCTAGGGTAACACGGCTCA
* * * * *
8665330 TACGTGATGAAGAGATCTGGTCTGGGGATGACACGATTCCTACGTGATGAGGACGGT-TGGCCAT
1 TACGTGATGAAGAGAGCTGGTCTAGGGATGACACGACTCATACGTGATGAAGA-GGTCTGGCCAT
8665394 CTAAAGGTGATAACACGGTTCCTACGTGATGAGGACGGCTGGTTATCTAGGGTGACACGGCTCAT
65 CTAAAGGTGATAACACGGTTCCTACGTGATGAGGACGGCTGGTTATCTAGGGTGACACGGCTCAT
* *
8665459 ACGTGATGAAGAGATCTGG-TCT-GGGGATGACACGATTCCTACGTGATGAGGACGGTTGGCCAT
130 ACGTGATGAAGAGATCTGGCTCTAGGGGATAACACGATTCCTACGTGATGAGGACGGCTGGCCAT
* *
8665522 CTAAAGGTGATAACACGGTTCC
195 CT--AGG-G-TAACACGGCTCA
* * *
8665544 TACGTGATGAGGACG-GCTGGTTATCTAGGG-TGACACGGCTCATACGTGATGAAGAGATCTGG-
1 TACGTGATGAAGA-GAGCTGG---TCTAGGGATGACACGACTCATACGTGATGAAGAGGTCTGGC
* * *
8665606 --TCT---GGGGATGACACGATTCCTACGTGATGAGGACGG
62 CATCTAAAGGTGATAACACGGTTCCTACGTGATGAGGACGG
8665642 TTGGCCATCT
Statistics
Matches: 269, Mismatches: 32, Indels: 28
0.82 0.10 0.09
Matches are distributed among these distances:
210 67 0.25
212 3 0.01
213 7 0.03
214 25 0.09
215 4 0.01
216 155 0.58
217 8 0.03
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (212 bp):
TACGTGATGAAGAGAGCTGGTCTAGGGATGACACGACTCATACGTGATGAAGAGGTCTGGCCATC
TAAAGGTGATAACACGGTTCCTACGTGATGAGGACGGCTGGTTATCTAGGGTGACACGGCTCATA
CGTGATGAAGAGATCTGGCTCTAGGGGATAACACGATTCCTACGTGATGAGGACGGCTGGCCATC
TAGGGTAACACGGCTCA
Found at i:8665715 original size:28 final size:28
Alignment explanation
Indices: 8665684--8665760 Score: 93
Period size: 28 Copynumber: 2.6 Consensus size: 28
8665674 AAACCAAATT
8665684 AAAGATTTGTTTCAAAAGAAACAAACCC
1 AAAGATTTGTTTCAAAAGAAACAAACCC
* *
8665712 AAAGATTCGTTTCAAGAA-AAACAAACTC
1 AAAGATTTGTTTCAA-AAGAAACAAACCC
8665740 AAAGATGATGTGTTTCAAAAG
1 AAAGAT--T-TGTTTCAAAAG
8665761 CAACTGTCTC
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
28 29 0.71
29 2 0.05
30 3 0.07
31 7 0.17
ACGTcount: A:0.48, C:0.14, G:0.14, T:0.23
Consensus pattern (28 bp):
AAAGATTTGTTTCAAAAGAAACAAACCC
Found at i:8665829 original size:63 final size:62
Alignment explanation
Indices: 8665762--8665879 Score: 159
Period size: 63 Copynumber: 1.9 Consensus size: 62
8665752 TTTCAAAAGC
*
8665762 AACTGTCTCCAAAGAGACAAAATTTTGTTTCAAA-GGAAACGA-CTCAAAGATTGTTTAAAGGAA
1 AACTGTCTCCAAAGAGACAAAA-TTCGTTT-AAAGGGAAACGATCTCAAAGA-TGTTTAAAGGAA
* * *
8665825 AACTGTCTCGAATGAGACAAAATTCGTTTAAAGGGAAATGATCTCAAAGATGTTT
1 AACTGTCTCCAAAGAGACAAAATTCGTTTAAAGGGAAACGATCTCAAAGATGTTT
8665880 GTTTTGTTTC
Statistics
Matches: 49, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
61 3 0.06
62 18 0.37
63 28 0.57
ACGTcount: A:0.41, C:0.14, G:0.19, T:0.27
Consensus pattern (62 bp):
AACTGTCTCCAAAGAGACAAAATTCGTTTAAAGGGAAACGATCTCAAAGATGTTTAAAGGAA
Found at i:8666167 original size:40 final size:40
Alignment explanation
Indices: 8666123--8666202 Score: 142
Period size: 40 Copynumber: 2.0 Consensus size: 40
8666113 GTTTTAATAG
*
8666123 AAACGATATCAAATGTGGGTATTTTCAAAAGAAGTTGTCT
1 AAACGATATCAAAGGTGGGTATTTTCAAAAGAAGTTGTCT
*
8666163 AAACGATCTCAAAGGTGGGTATTTTCAAAAGAAGTTGTCT
1 AAACGATATCAAAGGTGGGTATTTTCAAAAGAAGTTGTCT
8666203 CGAGAGACAA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.31
Consensus pattern (40 bp):
AAACGATATCAAAGGTGGGTATTTTCAAAAGAAGTTGTCT
Found at i:8666283 original size:31 final size:32
Alignment explanation
Indices: 8666215--8666283 Score: 111
Period size: 32 Copynumber: 2.2 Consensus size: 32
8666205 AGAGACAAAA
* *
8666215 TTTTGTTTCAAAGGAAACAAACTCAAAGATTT
1 TTTTTTTTCAAAAGAAACAAACTCAAAGATTT
*
8666247 TTTTTTTTCAAAAGAAACAATCTCAAAGATTT
1 TTTTTTTTCAAAAGAAACAAACTCAAAGATTT
8666279 TTTTT
1 TTTTT
8666284 CACAAAATTG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.38, C:0.12, G:0.09, T:0.42
Consensus pattern (32 bp):
TTTTTTTTCAAAAGAAACAAACTCAAAGATTT
Found at i:8666290 original size:31 final size:32
Alignment explanation
Indices: 8666223--8666290 Score: 93
Period size: 32 Copynumber: 2.2 Consensus size: 32
8666213 AATTTTGTTT
* **
8666223 CAAAGGAAACAAACTCAAAGATTTTTTTTTTT
1 CAAAAGAAACAAACTCAAAGATTTTTTTTTCA
*
8666255 CAAAAGAAACAATCTCAAAGA-TTTTTTTTCA
1 CAAAAGAAACAAACTCAAAGATTTTTTTTTCA
8666286 CAAAA
1 CAAAA
8666291 TTGTCTCAAG
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
31 13 0.41
32 19 0.59
ACGTcount: A:0.46, C:0.15, G:0.07, T:0.32
Consensus pattern (32 bp):
CAAAAGAAACAAACTCAAAGATTTTTTTTTCA
Found at i:8666336 original size:64 final size:63
Alignment explanation
Indices: 8666252--8666400 Score: 171
Period size: 63 Copynumber: 2.3 Consensus size: 63
8666242 GATTTTTTTT
*
8666252 TTTCAAAAGAAACA-ATCTCAAAGATTTTTTTTC-ACA-AAATTGTCTCAAGAGAGACAAAACTT
1 TTTCAAAAGAAACAGA-CTCAAAGA--TTTTTTCAAAAGAAATTGTCTCAA-AGAGACAAAACTT
8666314 TG
62 TG
* ** * *
8666316 TTTC-AAAGTAAATAGACTCAAAGATTTTTTCAAAAGAAATTGTCTTTAAGAGATAAAATTTTG
1 TTTCAAAAG-AAACAGACTCAAAGATTTTTTCAAAAGAAATTGTCTCAAAGAGACAAAACTTTG
8666379 TTTCAAAAGAAACAGACTCAAA
1 TTTCAAAAGAAACAGACTCAAA
8666401 TGATGGATCT
Statistics
Matches: 73, Mismatches: 7, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
62 7 0.10
63 35 0.48
64 30 0.41
65 1 0.01
ACGTcount: A:0.44, C:0.13, G:0.11, T:0.32
Consensus pattern (63 bp):
TTTCAAAAGAAACAGACTCAAAGATTTTTTCAAAAGAAATTGTCTCAAAGAGACAAAACTTTG
Found at i:8666690 original size:37 final size:36
Alignment explanation
Indices: 8666639--8666765 Score: 115
Period size: 37 Copynumber: 3.7 Consensus size: 36
8666629 GAAACAGATT
* *
8666639 TAAAGATTTT-TTTCAAAAGAAATTATCTTAAGAGA
1 TAAAAATTTTGTTTCAAAAGAAACTATCTTAAGAGA
* * *
8666674 TACAAAATTTTGTTTCAAAAGAAACAAACTCAA-AGA
1 TA-AAAATTTTGTTTCAAAAGAAACTATCTTAAGAGA
8666710 T-----TTTTGTTTCAAAAGAAACTATCTTAAGAGA
1 TAAAAATTTTGTTTCAAAAGAAACTATCTTAAGAGA
* * *
8666741 GAAAAAAATTTGTTTCCAAAGAAAC
1 -TAAAAATTTTGTTTCAAAAGAAAC
8666766 AAACTCAAAG
Statistics
Matches: 72, Mismatches: 11, Indels: 16
0.73 0.11 0.16
Matches are distributed among these distances:
30 23 0.32
31 3 0.04
35 2 0.03
36 11 0.15
37 33 0.46
ACGTcount: A:0.47, C:0.10, G:0.11, T:0.31
Consensus pattern (36 bp):
TAAAAATTTTGTTTCAAAAGAAACTATCTTAAGAGA
Found at i:8666736 original size:67 final size:66
Alignment explanation
Indices: 8666589--8666781 Score: 230
Period size: 67 Copynumber: 2.9 Consensus size: 66
8666579 ATTTACTTCA
** * * * * * *
8666589 AAAAGAAACGGTCTCAAGAGATACAAAATTCAT-TTT-AAGAGAAACAGATTTAAAGA-TTTTTT
1 AAAAGAAACTATCTTAAGAGATACAAAATT-TTGTTTCAAAAGAAACAAACTCAAAGATTTTTTT
8666651 TC
65 TC
*
8666653 AAAAGAAATTATCTTAAGAGATACAAAATTTTGTTTCAAAAGAAACAAACTCAAAGATTTTTGTT
1 AAAAGAAACTATCTTAAGAGATACAAAATTTTGTTTCAAAAGAAACAAACTCAAAGATTTTT-TT
8666718 TC
65 TC
* * * *
8666720 AAAAGAAACTATCTTAAGAGAGAAAAAAATTTGTTTCCAAAGAAACAAACTCAAAGATTTTT
1 AAAAGAAACTATCTTAAGAGATACAAAATTTTGTTTCAAAAGAAACAAACTCAAAGATTTTT
8666782 CAAAAGAAAC
Statistics
Matches: 111, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
63 1 0.01
64 29 0.26
65 16 0.14
66 4 0.04
67 61 0.55
ACGTcount: A:0.48, C:0.11, G:0.12, T:0.30
Consensus pattern (66 bp):
AAAAGAAACTATCTTAAGAGATACAAAATTTTGTTTCAAAAGAAACAAACTCAAAGATTTTTTTT
C
Found at i:8666738 original size:29 final size:30
Alignment explanation
Indices: 8666681--8667013 Score: 165
Period size: 29 Copynumber: 11.1 Consensus size: 30
8666671 AGATACAAAA
8666681 TTTTGTTTCAAAAGAAACAAACTCAAAGAT
1 TTTTGTTTCAAAAGAAACAAACTCAAAGAT
* * * *
8666711 TTTTGTTTCAAAAGAAACTATCTTAAGAGAGAAAAAA
1 TTTTGTTTCAAAAGAAACAAAC-TCA-A-AG----AT
* *
8666748 ATTTGTTTCCAAAGAAACAAACTCAAAGA-
1 TTTTGTTTCAAAAGAAACAAACTCAAAGAT
*
8666777 --TT-TTTCAAAAGAAAC-GACTCAAAGAT
1 TTTTGTTTCAAAAGAAACAAACTCAAAGAT
* * * *
8666803 ATTT-ATTCAAAAGGAACAAACTCCAAGAT
1 TTTTGTTTCAAAAGAAACAAACTCAAAGAT
* * *
8666832 TTTT-ATTCAAAAGGAACAAATTCAAAGA-
1 TTTTGTTTCAAAAGAAACAAACTCAAAGAT
* *** *
8666860 TTTT-TTTCAAGAGAAACTGTCTCAAGAGAGACAAAA
1 TTTTGTTTCAAAAGAAACAAACTC-A-A-AG----AT
* * * * *
8666896 CTTTGTTTTAAAATAAATAGACTCAAAGA-
1 TTTTGTTTCAAAAGAAACAAACTCAAAGAT
8666925 -TTT-TTTCAAAAGAAAC-AACTCAAAGAT
1 TTTTGTTTCAAAAGAAACAAACTCAAAGAT
* * * *
8666952 ATTT-ATTCAAAAGGAACAAACTCCAAGAT
1 TTTTGTTTCAAAAGAAACAAACTCAAAGAT
* *
8666981 TTTT-ATTCAAAAGGAACAAACTCAAAGAT
1 TTTTGTTTCAAAAGAAACAAACTCAAAGAT
8667010 TTTT
1 TTTT
8667014 CAAGAGAAAC
Statistics
Matches: 239, Mismatches: 41, Indels: 47
0.73 0.13 0.14
Matches are distributed among these distances:
25 9 0.04
26 21 0.09
27 12 0.05
28 46 0.19
29 76 0.32
30 23 0.10
31 4 0.02
32 1 0.00
33 2 0.01
34 4 0.02
35 3 0.01
36 6 0.03
37 32 0.13
ACGTcount: A:0.47, C:0.14, G:0.11, T:0.29
Consensus pattern (30 bp):
TTTTGTTTCAAAAGAAACAAACTCAAAGAT
Found at i:8666968 original size:149 final size:148
Alignment explanation
Indices: 8666687--8667041 Score: 543
Period size: 149 Copynumber: 2.4 Consensus size: 148
8666677 AAAATTTTGT
* * * *
8666687 TTCAAAAGAAACAAACTCAAAGATTTTTGTTTCAAAAGAAACTATCTTAAGAGAGAAAAAAATTT
1 TTCAAAAGGAACAAACTCAAAGA-TTTT-TTTCAAGAGAAACTGTCTCAAGAGAGAAAAAAATTT
* *
8666752 GTTTCCAAAGAAACAAACTCAAAGATTTTTCAAAAGAAACGACTCAAAGATATTTATTCAAAAGG
64 GTTTCAAAAGAAACAAACTCAAAGATTTTTCAAAAGAAACAACTCAAAGATATTTATTCAAAAGG
8666817 AACAAACTCCAAGATTTTTA
129 AACAAACTCCAAGATTTTTA
* * *
8666837 TTCAAAAGGAACAAATTCAAAGATTTTTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTTGT
1 TTCAAAAGGAACAAACTCAAAGATTTTTTTCAAGAGAAACTGTCTCAAGAGAGAAAAAAATTTGT
* * * *
8666902 TTTAAAATAAATAGACTCAAAGATTTTTTCAAAAGAAACAACTCAAAGATATTTATTCAAAAGGA
66 TTCAAAAGAAACAAACTCAAAGA-TTTTTCAAAAGAAACAACTCAAAGATATTTATTCAAAAGGA
8666967 ACAAACTCCAAGATTTTTA
130 ACAAACTCCAAGATTTTTA
*
8666986 TTCAAAAGGAACAAACTCAAAGA--TTTTTCAAGAGAAACTGTCTCAAGAGACAAAAA
1 TTCAAAAGGAACAAACTCAAAGATTTTTTTCAAGAGAAACTGTCTCAAGAGAGAAAAA
8667042 TCGTTTTAAA
Statistics
Matches: 188, Mismatches: 16, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
147 31 0.16
148 51 0.27
149 85 0.45
150 21 0.11
ACGTcount: A:0.48, C:0.14, G:0.12, T:0.26
Consensus pattern (148 bp):
TTCAAAAGGAACAAACTCAAAGATTTTTTTCAAGAGAAACTGTCTCAAGAGAGAAAAAAATTTGT
TTCAAAAGAAACAAACTCAAAGATTTTTCAAAAGAAACAACTCAAAGATATTTATTCAAAAGGAA
CAAACTCCAAGATTTTTA
Found at i:8667383 original size:36 final size:35
Alignment explanation
Indices: 8667289--8667385 Score: 97
Period size: 36 Copynumber: 2.7 Consensus size: 35
8667279 TTAAGATATA
* * **
8667289 GTCTCAAATGAGACCAAATTTGTTTTTATAGAAATT
1 GTCTCAAGTGAGA-CAAATTTGTTTTTAGAGAAAAC
*
8667325 GTCTCAAGCGAGACAAAGTTTGTTTTT-GAGAAAAC
1 GTCTCAAGTGAGACAAA-TTTGTTTTTAGAGAAAAC
*
8667360 GATCTCAAGTGAGATCAACTTTGTTT
1 G-TCTCAAGTGAGA-CAAATTTGTTT
8667386 AATGTGAAAC
Statistics
Matches: 51, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
35 10 0.20
36 38 0.75
37 3 0.06
ACGTcount: A:0.33, C:0.13, G:0.19, T:0.35
Consensus pattern (35 bp):
GTCTCAAGTGAGACAAATTTGTTTTTAGAGAAAAC
Found at i:8667505 original size:105 final size:101
Alignment explanation
Indices: 8667325--8667557 Score: 283
Period size: 105 Copynumber: 2.3 Consensus size: 101
8667315 TATAGAAATT
* *
8667325 GTCTCAAGCGAGACAAAGTTTGTTTTTGAGAAAACGATCTCAAGTGAGATCAACTTTGTTTAATG
1 GTCTCAAGCGAGACAAAATTTG-TTTTGAGAAAACAATCTCAAGTGAGATCAACTTTGTTTAATG
*
8667390 TGAAACAAATTCGAAATTTGGATCTCAAAGGGA-AAAG
65 TGAAACAAATTCAAAATTTGGATCTCAAA-GGACAAAG
* *
8667427 GTCTCAAGCGAGACAAAATTTGTTTTGAAAGAAACAACAATCT-AAGGTGAGATTAATTTTGTTT
1 GTCTCAAGCGAGACAAAATTTGTTTTG--AG-AA-AACAATCTCAA-GTGAGATCAACTTTG-TT
* * *
8667491 TAA-GTGAATCAAATTCAAAATTTGTATCTCAAAGGACAAAT
60 TAATGTGAAACAAATTCAAAATTTGGATCTCAAAGGACAAAG
**
8667532 GTCTCAAGCGAGACGCAATTTGTTTT
1 GTCTCAAGCGAGACAAAATTTGTTTT
8667558 AAAATTCTCA
Statistics
Matches: 114, Mismatches: 10, Indels: 11
0.84 0.07 0.08
Matches are distributed among these distances:
101 5 0.04
102 21 0.18
103 2 0.02
104 7 0.06
105 74 0.65
106 5 0.04
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.30
Consensus pattern (101 bp):
GTCTCAAGCGAGACAAAATTTGTTTTGAGAAAACAATCTCAAGTGAGATCAACTTTGTTTAATGT
GAAACAAATTCAAAATTTGGATCTCAAAGGACAAAG
Found at i:8668080 original size:16 final size:15
Alignment explanation
Indices: 8668033--8668084 Score: 65
Period size: 16 Copynumber: 3.5 Consensus size: 15
8668023 ATATGTATAT
8668033 ATGTATGTATGAATTG
1 ATGTATGTATG-ATTG
8668049 ATGTATGTAT-A-T-
1 ATGTATGTATGATTG
8668061 ATGTATGTATGAGTTG
1 ATGTATGTATGA-TTG
8668077 ATGTATGT
1 ATGTATGT
8668085 TTCTCAATCT
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
12 10 0.31
13 2 0.06
14 1 0.03
15 1 0.03
16 18 0.56
ACGTcount: A:0.29, C:0.00, G:0.25, T:0.46
Consensus pattern (15 bp):
ATGTATGTATGATTG
Found at i:8668084 original size:4 final size:4
Alignment explanation
Indices: 8667999--8668071 Score: 73
Period size: 4 Copynumber: 19.0 Consensus size: 4
8667989 ATGCAAATTT
* *
8667999 TATG TAT- TATG TATG TATG --TG TATA TATG TATA TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* *
8668044 AAT- TGATG TATG TATA TATG TATG TATG
1 TATG T-ATG TATG TATG TATG TATG TATG
8668072 AGTTGATGTA
Statistics
Matches: 56, Mismatches: 8, Indels: 10
0.76 0.11 0.14
Matches are distributed among these distances:
2 2 0.04
3 3 0.05
4 50 0.89
5 1 0.02
ACGTcount: A:0.30, C:0.00, G:0.21, T:0.49
Consensus pattern (4 bp):
TATG
Found at i:8675447 original size:3 final size:3
Alignment explanation
Indices: 8675439--8675502 Score: 110
Period size: 3 Copynumber: 21.3 Consensus size: 3
8675429 ATGTAAATTA
8675439 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* *
8675487 AAT AAC GAT AAT AAT A
1 AAT AAT AAT AAT AAT A
8675503 TACAAAAAAA
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 57 1.00
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:8682665 original size:13 final size:12
Alignment explanation
Indices: 8682629--8682671 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
8682619 TTATTTTTGA
* *
8682629 TTTTTGATTTTA
1 TTTTTTATTTTC
*
8682641 TTTTTTACTTTC
1 TTTTTTATTTTC
8682653 TTTTGTTATTTTC
1 TTTT-TTATTTTC
8682666 TTTTTT
1 TTTTTT
8682672 TGATAATTTG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
12 15 0.58
13 11 0.42
ACGTcount: A:0.09, C:0.07, G:0.05, T:0.79
Consensus pattern (12 bp):
TTTTTTATTTTC
Found at i:8683905 original size:14 final size:15
Alignment explanation
Indices: 8683867--8683896 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
8683857 TTAAATTAAC
8683867 AAAAAAAATCTAAAT
1 AAAAAAAATCTAAAT
8683882 AAAAAAAATCTAAAT
1 AAAAAAAATCTAAAT
8683897 TAACAAATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.73, C:0.07, G:0.00, T:0.20
Consensus pattern (15 bp):
AAAAAAAATCTAAAT
Found at i:8690769 original size:28 final size:28
Alignment explanation
Indices: 8690737--8690819 Score: 80
Period size: 28 Copynumber: 3.0 Consensus size: 28
8690727 CTATGTTTAT
* *
8690737 ATTATATCATCGAGT-TATTACTTGAAAC
1 ATTATATCATCGAGTCGA-TACTTAAAAC
* * *
8690765 ATTATATCGTCCAGTCGATACTTAAAAT
1 ATTATATCATCGAGTCGATACTTAAAAC
*
8690793 ATTATATTATCGAGTC-AGTACTTAAAA
1 ATTATATCATCGAGTCGA-TACTTAAAA
8690820 GAAACAGTGG
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
27 1 0.02
28 43 0.96
29 1 0.02
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.37
Consensus pattern (28 bp):
ATTATATCATCGAGTCGATACTTAAAAC
Found at i:8695914 original size:2 final size:2
Alignment explanation
Indices: 8695909--8695937 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
8695899 TGAAAAGAAC
8695909 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8695938 AAGATAATAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8697623 original size:16 final size:17
Alignment explanation
Indices: 8697591--8697625 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
8697581 CAAATAAATA
8697591 TATTTAACCTATACACAC
1 TATTTAACC-ATACACAC
8697609 TATTTAACC-TACACAC
1 TATTTAACCATACACAC
8697625 T
1 T
8697626 TCTGTTTCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.47
18 9 0.53
ACGTcount: A:0.37, C:0.29, G:0.00, T:0.34
Consensus pattern (17 bp):
TATTTAACCATACACAC
Found at i:8702935 original size:37 final size:37
Alignment explanation
Indices: 8702886--8702993 Score: 171
Period size: 37 Copynumber: 2.9 Consensus size: 37
8702876 AACATAACGT
* *
8702886 TAGAGTTCTACTATGATTTAAACTCCTAAAAATATGA
1 TAGAATTCTACTATGATTCAAACTCCTAAAAATATGA
* *
8702923 TAGAATTTTACTAAGATTCAAACTCCTAAAAATATGA
1 TAGAATTCTACTATGATTCAAACTCCTAAAAATATGA
*
8702960 TAGAGTTCTACTATGATTCAAACTCCTAAAAATA
1 TAGAATTCTACTATGATTCAAACTCCTAAAAATA
8702994 AGATCCACAA
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.43, C:0.15, G:0.09, T:0.33
Consensus pattern (37 bp):
TAGAATTCTACTATGATTCAAACTCCTAAAAATATGA
Found at i:8703533 original size:21 final size:20
Alignment explanation
Indices: 8703483--8703535 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
8703473 TTTTTTTTCA
8703483 TGTA-ATATTTTTTTTACTT
1 TGTATATATTTTTTTTACTT
* **
8703502 TTTATGCATTTTTTTTACTT
1 TGTATATATTTTTTTTACTT
8703522 TAGTATATATTTTT
1 T-GTATATATTTTT
8703536 ATTTTTTTAG
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
19 3 0.12
20 14 0.54
21 9 0.35
ACGTcount: A:0.21, C:0.06, G:0.06, T:0.68
Consensus pattern (20 bp):
TGTATATATTTTTTTTACTT
Found at i:8703599 original size:2 final size:2
Alignment explanation
Indices: 8703592--8703668 Score: 75
Period size: 2 Copynumber: 38.5 Consensus size: 2
8703582 TTTATTAATT
* *
8703592 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA CTA TT TT
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA
* * * * *
8703635 TT TA TG TT TT TA TT TA T- TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8703669 TATTTTTACT
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
1 1 0.02
2 63 0.95
3 2 0.03
ACGTcount: A:0.39, C:0.01, G:0.01, T:0.58
Consensus pattern (2 bp):
TA
Found at i:8703692 original size:40 final size:38
Alignment explanation
Indices: 8703614--8703691 Score: 117
Period size: 38 Copynumber: 2.1 Consensus size: 38
8703604 TATATATATA
8703614 TATATATATATATACTATTTTTTTATGTTTTTATTTAT
1 TATATATATATATACTATTTTTTTATGTTTTTATTTAT
8703652 TATATATATATATA-TATTATTTTTACT-TTTTTA-TTAT
1 TATATATATATATACTATT-TTTTTA-TGTTTTTATTTAT
8703689 TAT
1 TAT
8703692 TTGTTTTATT
Statistics
Matches: 38, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
37 11 0.29
38 26 0.68
39 1 0.03
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.65
Consensus pattern (38 bp):
TATATATATATATACTATTTTTTTATGTTTTTATTTAT
Found at i:8706590 original size:95 final size:95
Alignment explanation
Indices: 8706426--8706607 Score: 242
Period size: 95 Copynumber: 1.9 Consensus size: 95
8706416 ATATTATATA
* * *
8706426 TATACAATAAAGCATGAGTTGTCCATCTAAAGCAATTGGTTAAACGCCCTGGCTCTATGGATAAT
1 TATACAATAAAGCATGAGTTGTCCATCTAAAGCAATTGATTAAACGCCCTAGCTCTATGGATAAG
*
8706491 ATTCAGCTAGCCTGATAAAGGTAATTTTAC
66 ATTCAGCTAACCTGATAAAGGTAATTTTAC
* * * * * *
8706521 TATACAATAAAGCTTGAGTTGT-CACTCTAAGGCAATTGATTAAATG-CTTCAGCTTTATTGATA
1 TATACAATAAAGCATGAGTTGTCCA-TCTAAAGCAATTGATTAAACGCCCT-AGCTCTATGGATA
8706584 AGATTCAGCTAACCTGATAAAGGT
64 AGATTCAGCTAACCTGATAAAGGT
8706608 GTTTACATAT
Statistics
Matches: 75, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
94 4 0.05
95 71 0.95
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Consensus pattern (95 bp):
TATACAATAAAGCATGAGTTGTCCATCTAAAGCAATTGATTAAACGCCCTAGCTCTATGGATAAG
ATTCAGCTAACCTGATAAAGGTAATTTTAC
Found at i:8708031 original size:84 final size:83
Alignment explanation
Indices: 8707816--8709025 Score: 1232
Period size: 84 Copynumber: 14.6 Consensus size: 83
8707806 AACATAACTC
* * * * *
8707816 AAGGGTTGTCTGTCATCC-AAGACCTTCAAGTTCGACTACGCTCAGCTCCAAGACACATCATTTA
1 AAGGGTTATCTG-CAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTG
* * * *
8707880 CAGCATAGCTCAAGGCCAG
65 CAGCATAACTTAAGTCGAG
* * * * *
8707899 AAGGGTTATCTTCCACC-AAGACCTTCGAGTTCGACTCCACTCAGCTCCAAGGCATATCATTTGC
1 AAGGGTTATCTGCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGC
*
8707963 AACATAACTTAAGTCGAG
66 AGCATAACTTAAGTCGAG
* *
8707981 AAGGGTTATATGCCAACCAAAGACCTTCGAGTTCGACTACGCTCATCTCCAAGGCACATCATTTG
1 AAGGGTTATCTG-CAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTG
* *
8708046 CAGCATAGCTTAAGTCAAG
65 CAGCATAACTTAAGTCGAG
* * * * * * * * *
8708065 AAGGGCTATCTG---CCAAAGACCCTCGAGTTCGATTATGCTTAGCTTCGAGGGCACATTATTTA
1 AAGGGTTATCTGCAACCAAAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCACATCATTTG
* * * * * *
8708127 CAACTTAACTCAAGGCTAT
65 CAGCATAACTTAAGTCGAG
* *
8708146 AAGGGTTATCTGTAACCAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTG
1 AAGGGTTATCTGCAACC-AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTG
*
8708211 CAACATAACTTAAGTCGAG
65 CAGCATAACTTAAGTCGAG
* * * * *
8708230 AAGGGTTATCTGCCAACCAAAAACCTTCGAGTTCGACTACGCTAATCTCCATGACACATCATTTG
1 AAGGGTTATCTG-CAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTG
*
8708295 CAGCATAGCTTAAGTCGAG
65 CAGCATAACTTAAGTCGAG
* * * * * * * *
8708314 AAGGGCTATCTG---CCAAAGTCCCTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTA
1 AAGGGTTATCTGCAACCAAAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCACATCATTTG
* * *
8708376 CAGCATAACTCAAGGCTAG
65 CAGCATAACTTAAGTCGAG
* * * * * *
8708395 AAGGGTTATCTGTAACCAAAAGACCTTCGAGATCGACTATGCTCAGCTCCAATGTATATCATTTG
1 AAGGGTTATCTGCAACC-AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTG
8708460 CAGCATAACTTAAGTCGAG
65 CAGCATAACTTAAGTCGAG
* *
8708479 AAGGGTTATTTGCCAACCAAAGACCTTCGAATTCGACTACGCTCAGCTCCAAGGCACATCATTTG
1 AAGGGTTATCTG-CAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTG
8708544 CAGCATAACTTAAGTCGAG
65 CAGCATAACTTAAGTCGAG
* * * * * *
8708563 AAGGGCTATCTG---CCAAAGATCC-TCGAGTTTGATTACACTCAGCTTCGAGGGCACATCATTT
1 AAGGGTTATCTGCAACCAAAGA-CCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCACATCATTT
* * * *
8708624 ACAGCATAACTCAAGGCTAG
64 GCAGCATAACTTAAGTCGAG
* * *
8708644 AAGGGTTATTTGTAACCAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTG
1 AAGGGTTATCTGCAACC-AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTG
*
8708709 CAACATAACTTAAGTCGAG
65 CAGCATAACTTAAGTCGAG
* * * *
8708728 AAGGGTTATCTGCCAACCAAAGATCTTCGAGTTTGACTACGCTCAGCTTCAAGGCGCATCATTTG
1 AAGGGTTATCTG-CAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTG
*
8708793 CAGCATAGCTTAAGTCGAG
65 CAGCATAACTTAAGTCGAG
* * * * *
8708812 AAGGGTTATCTG---CCAAAGATCC-TCGAGCTCGATTACACTCAGCTTCGAGGGCACATCATTT
1 AAGGGTTATCTGCAACCAAAGA-CCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCACATCATTT
* * * * *
8708873 ACAACATAA-TTCAAGGCTAT
64 GCAGCATAACTT-AAGTCGAG
*
8708893 AAGGGTTATCTGTC-ACCAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGTACATCATTT
1 AAGGGTTATCTG-CAACC-AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTT
** * *
8708957 GCAATATAGCTTAAGTTGAG
64 GCAGCATAACTTAAGTCGAG
* * * *
8708977 AAGGGCTATCTGCCAACCGAAGACCTTCGAGTTCGATTACACTCAGCTC
1 AAGGGTTATCTG-CAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTC
8709026 AGAGGCAAAC
Statistics
Matches: 921, Mismatches: 174, Indels: 63
0.80 0.15 0.05
Matches are distributed among these distances:
80 100 0.11
81 157 0.17
82 67 0.07
83 14 0.02
84 472 0.51
85 111 0.12
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (83 bp):
AAGGGTTATCTGCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGC
AGCATAACTTAAGTCGAG
Found at i:8708198 original size:165 final size:163
Alignment explanation
Indices: 8707816--8709025 Score: 1189
Period size: 165 Copynumber: 7.3 Consensus size: 163
8707806 AACATAACTC
* * * * *
8707816 AAGGGTTGTCTGTCATCC-AAGACCTTCAAGTTCGACTACGCTCAGCTCCAAGACACATCATTTA
1 AAGGGTTATCTG-CAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTG
* * * * * * *
8707880 CAGCATAGCTCAAGGCCAGAAGGGTTATCTTCCACCAAGACCTTCGAGTTCGACTCCACTCAGCT
65 CAGCATAACTTAAGTCGAGAAGGGTTATCTGCCA--AAGACCTTCGAGTTCGACTACGCTCAGCT
* *
8707945 CCAAGGCATATCATTTGCAACATAACTTAAGTCGAG
128 CCAAGGCACATCATTTGCAGCATAACTTAAGTCGAG
* *
8707981 AAGGGTTATATGCCAACCAAAGACCTTCGAGTTCGACTACGCTCATCTCCAAGGCACATCATTTG
1 AAGGGTTATCTG-CAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTG
* * * * * * *
8708046 CAGCATAGCTTAAGTCAAGAAGGGCTATCTGCCAAAGACCCTCGAGTTCGATTATGCTTAGCTTC
65 CAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAAAGACCTTCGAGTTCGACTACGCTCAGC-TC
* * * * * * * * * *
8708111 GAGGGCACATTATTTACAACTTAACTCAAGGCTAT
129 CAAGGCACATCATTTGCAGCATAACTTAAGTCGAG
* *
8708146 AAGGGTTATCTGTAACCAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTG
1 AAGGGTTATCTGCAACC-AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTG
* * * *
8708211 CAACATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAAACCTTCGAGTTCGACTACGCTAAT
65 CAGCATAACTTAAGTCGAGAAGGGTTATCTG----CCAAAGACCTTCGAGTTCGACTACGCTCAG
* * *
8708276 CTCCATGACACATCATTTGCAGCATAGCTTAAGTCGAG
126 CTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAG
* * * * * * * *
8708314 AAGGGCTATCTG---CCAAAGTCCCTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTA
1 AAGGGTTATCTGCAACCAAAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCACATCATTTG
* * * * *
8708376 CAGCATAACTCAAGGCTAGAAGGGTTATCTGTAACCAAAAGACCTTCGAGATCGACTATGCTCAG
65 CAGCATAACTTAAGTCGAGAAGGGTTATCTG---CC-AAAGACCTTCGAGTTCGACTACGCTCAG
* * *
8708441 CTCCAATGTATATCATTTGCAGCATAACTTAAGTCGAG
126 CTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAG
* *
8708479 AAGGGTTATTTGCCAACCAAAGACCTTCGAATTCGACTACGCTCAGCTCCAAGGCACATCATTTG
1 AAGGGTTATCTG-CAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTG
* * * *
8708544 CAGCATAACTTAAGTCGAGAAGGGCTATCTGCCAAAGATCC-TCGAGTTTGATTACACTCAGCTT
65 CAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAAAGA-CCTTCGAGTTCGACTACGCTCAGC-T
* * * * * *
8708608 CGAGGGCACATCATTTACAGCATAACTCAAGGCTAG
128 CCAAGGCACATCATTTGCAGCATAACTTAAGTCGAG
* * *
8708644 AAGGGTTATTTGTAACCAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTG
1 AAGGGTTATCTGCAACC-AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTG
* * *
8708709 CAACATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGATCTTCGAGTTTGACTACGCTCAG
65 CAGCATAACTTAAGTCGAGAAGGGTTATCTG----CCAAAGACCTTCGAGTTCGACTACGCTCAG
* * *
8708774 CTTCAAGGCGCATCATTTGCAGCATAGCTTAAGTCGAG
126 CTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAG
* * * * *
8708812 AAGGGTTATCTG---CCAAAGATCC-TCGAGCTCGATTACACTCAGCTTCGAGGGCACATCATTT
1 AAGGGTTATCTGCAACCAAAGA-CCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCACATCATTT
* * * * *
8708873 ACAACATAA-TTCAAGGCTATAAGGGTTATCTGTCACCAAAAGACCTTCGAGTTCGACTACGCTC
64 GCAGCATAACTT-AAGTCGAGAAGGGTTATCTG---CC-AAAGACCTTCGAGTTCGACTACGCTC
* ** * *
8708937 AGCTCCAAGGTACATCATTTGCAATATAGCTTAAGTTGAG
124 AGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAG
* * * *
8708977 AAGGGCTATCTGCCAACCGAAGACCTTCGAGTTCGATTACACTCAGCTC
1 AAGGGTTATCTG-CAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTC
8709026 AGAGGCAAAC
Statistics
Matches: 866, Mismatches: 149, Indels: 57
0.81 0.14 0.05
Matches are distributed among these distances:
164 108 0.12
165 462 0.53
166 71 0.08
168 122 0.14
169 103 0.12
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (163 bp):
AAGGGTTATCTGCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGC
AGCATAACTTAAGTCGAGAAGGGTTATCTGCCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCA
AGGCACATCATTTGCAGCATAACTTAAGTCGAG
Found at i:8708318 original size:249 final size:249
Alignment explanation
Indices: 8707834--8709025 Score: 1816
Period size: 249 Copynumber: 4.8 Consensus size: 249
8707824 TCTGTCATCC
* * * * * * * * *
8707834 AAGACCTTCAAGTTCGACTACGCTCAGC-TCCAAGACACATCATTTACAGCATAGCTCAAGGCCA
1 AAGACCCTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAGCATAACTCAAGGCTA
* * *
8707898 GAAGGGTTATCT-T--CCACCAAGACCTTCGAGTTCGACTCCACTCAGCTCCAAGGCATATCATT
66 GAAGGGTTATCTGTAACCA-AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATT
*
8707960 TGCAACATAACTTAAGTCGAGAAGGGTTATATGCCAACCAAAGACCTTCGAGTTCGACTACGCTC
130 TGCAACATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTC
* *
8708025 ATCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCAAGAAGGGCTATCTGCCA
195 AGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCA
** * * * *
8708080 AAGACCCTCGAGTTCGATTATGCTTAGCTTCGAGGGCACATTATTTACAACTTAACTCAAGGCTA
1 AAGACCCTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAGCATAACTCAAGGCTA
*
8708145 TAAGGGTTATCTGTAACCAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTT
66 GAAGGGTTATCTGTAACCAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTT
* *
8708210 GCAACATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAAACCTTCGAGTTCGACTACGCTAA
131 GCAACATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCA
* * *
8708275 TCTCCATGACACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCA
196 GCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCA
*
8708329 AAGTCCCTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAGCATAACTCAAGGCTA
1 AAGACCCTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAGCATAACTCAAGGCTA
* * * *
8708394 GAAGGGTTATCTGTAACCAAAAGACCTTCGAGATCGACTATGCTCAGCTCCAATGTATATCATTT
66 GAAGGGTTATCTGTAACCAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTT
* * *
8708459 GCAGCATAACTTAAGTCGAGAAGGGTTATTTGCCAACCAAAGACCTTCGAATTCGACTACGCTCA
131 GCAACATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCA
*
8708524 GCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAGAAGGGCTATCTGCCA
196 GCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCA
* *
8708578 AAGATCCTCGAGTTTGATTACACTCAGCTTCGAGGGCACATCATTTACAGCATAACTCAAGGCTA
1 AAGACCCTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAGCATAACTCAAGGCTA
*
8708643 GAAGGGTTATTTGTAACCAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTT
66 GAAGGGTTATCTGTAACCAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTT
* *
8708708 GCAACATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGATCTTCGAGTTTGACTACGCTCA
131 GCAACATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCA
* * *
8708773 GCTTCAAGGCGCATCATTTGCAGCATAGCTTAAGTCGAGAAGGGTTATCTGCCA
196 GCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCA
* * * *
8708827 AAGATCCTCGAGCTCGATTACACTCAGCTTCGAGGGCACATCATTTACAACATAATTCAAGGCTA
1 AAGACCCTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAGCATAACTCAAGGCTA
* * * *
8708892 TAAGGGTTATCTGTCACCAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGTACATCATTT
66 GAAGGGTTATCTGTAACCAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTT
* * * * * * *
8708957 GCAATATAGCTTAAGTTGAGAAGGGCTATCTGCCAACCGAAGACCTTCGAGTTCGATTACACTCA
131 GCAACATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCA
8709022 GCTC
196 GCTC
8709026 AGAGGCAAAC
Statistics
Matches: 862, Mismatches: 80, Indels: 5
0.91 0.08 0.01
Matches are distributed among these distances:
246 23 0.03
247 39 0.05
248 1 0.00
249 796 0.92
250 3 0.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.25
Consensus pattern (249 bp):
AAGACCCTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAGCATAACTCAAGGCTA
GAAGGGTTATCTGTAACCAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTT
GCAACATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCA
GCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCA
Found at i:8709647 original size:37 final size:37
Alignment explanation
Indices: 8709606--8709717 Score: 179
Period size: 37 Copynumber: 3.0 Consensus size: 37
8709596 AACATAACGT
* *
8709606 TAGAGTTATACTAGGATTCAAACTCCTAAAAATATGA
1 TAGAGTTATACTATGATTCAAACTCCTAAAAATAAGA
* *
8709643 TAGAGTTTTACTATGATTTAAACTCCTAAAAATAAGA
1 TAGAGTTATACTATGATTCAAACTCCTAAAAATAAGA
*
8709680 TAGAGTTATACTATGATTCAAACTTCTAAAAATAAGA
1 TAGAGTTATACTATGATTCAAACTCCTAAAAATAAGA
8709717 T
1 T
8709718 CCATAAGCAT
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.44, C:0.12, G:0.12, T:0.33
Consensus pattern (37 bp):
TAGAGTTATACTATGATTCAAACTCCTAAAAATAAGA
Found at i:8710323 original size:39 final size:34
Alignment explanation
Indices: 8710280--8710374 Score: 111
Period size: 35 Copynumber: 2.6 Consensus size: 34
8710270 AGATTACATA
8710280 TATATATATATGTTATTTTTATTATATGTTTTATTAATT
1 TATATATATAT-TTATTTTTATT-TATG-TTT-TT-ATT
8710319 TATATATATATTTATTATTT-TTTATGTTTTTATT
1 TATATATATATTTATT-TTTATTTATGTTTTTATT
8710353 TATTATATATATATTATTTTTA
1 TA-TATATATAT-TTATTTTTA
8710375 CTTTTTTATT
Statistics
Matches: 52, Mismatches: 0, Indels: 11
0.83 0.00 0.17
Matches are distributed among these distances:
34 5 0.10
35 14 0.27
36 8 0.15
37 4 0.08
38 7 0.13
39 14 0.27
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (34 bp):
TATATATATATTTATTTTTATTTATGTTTTTATT
Found at i:8710334 original size:4 final size:4
Alignment explanation
Indices: 8710309--8710429 Score: 62
Period size: 4 Copynumber: 30.8 Consensus size: 4
8710299 TATTATATGT
* * *
8710309 TTTA TTAA TTTA TATA TATA TTTA -TTA TTT- TTTA TGTT- TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA T-TTA TTTA TTTA
*
8710355 TTATA TATA TATTA -TT- TTTA CTTT- TTTA -TTA -TTA TTTGA TTTA
1 TT-TA TTTA T-TTA TTTA TTTA -TTTA TTTA TTTA TTTA TTT-A TTTA
* *
8710398 TTTGT TTTA TTTA TATA TATT- TTTA TTTA TTT
1 TTT-A TTTA TTTA TTTA T-TTA TTTA TTTA TTT
8710430 TACTCACTAT
Statistics
Matches: 92, Mismatches: 10, Indels: 30
0.70 0.08 0.23
Matches are distributed among these distances:
3 23 0.25
4 51 0.55
5 18 0.20
ACGTcount: A:0.26, C:0.01, G:0.02, T:0.70
Consensus pattern (4 bp):
TTTA
Found at i:8710337 original size:35 final size:35
Alignment explanation
Indices: 8710284--8710367 Score: 91
Period size: 37 Copynumber: 2.3 Consensus size: 35
8710274 TACATATATA
*
8710284 TATATATGTTATTTTTA-TTATATG-TTTTATTAATT
1 TATATAT-ATATTTTTATTTATATGTTTTTATTAA-T
* *
8710319 TATATATATATTTATTATTTTTTATGTTTTTATTTAT
1 TATATATATATTT-TTA-TTTATATGTTTTTATTAAT
8710356 TATATATATATT
1 TATATATATATT
8710368 ATTTTTACTT
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
34 5 0.12
35 10 0.24
37 19 0.45
38 8 0.19
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.67
Consensus pattern (35 bp):
TATATATATATTTTTATTTATATGTTTTTATTAAT
Found at i:8710345 original size:37 final size:39
Alignment explanation
Indices: 8710278--8710383 Score: 130
Period size: 39 Copynumber: 2.7 Consensus size: 39
8710268 TAAGATTACA
8710278 TATATATATATATGTTATT-TTTATTATATG-TTTTATTAAT
1 TATATATATATAT-TTATTATTT-TT-TATGTTTTTATTAAT
*
8710318 T-TATATATATATTTATTATTTTTTATGTTTTTATTTAT
1 TATATATATATATTTATTATTTTTTATGTTTTTATTAAT
8710356 TATATATATATTATTT-TTACTTTTTTAT
1 TATATATATA-TATTTATTA-TTTTTTAT
8710384 TATTATTTGA
Statistics
Matches: 60, Mismatches: 1, Indels: 10
0.85 0.01 0.14
Matches are distributed among these distances:
37 4 0.07
38 17 0.28
39 25 0.42
40 14 0.23
ACGTcount: A:0.29, C:0.01, G:0.03, T:0.67
Consensus pattern (39 bp):
TATATATATATATTTATTATTTTTTATGTTTTTATTAAT
Found at i:8710368 original size:33 final size:32
Alignment explanation
Indices: 8710316--8710389 Score: 98
Period size: 33 Copynumber: 2.3 Consensus size: 32
8710306 TGTTTTATTA
*
8710316 ATTTATATATATATTTATTATTTTTTA-TGTTTTT
1 ATTTAT-TATATATATATTA-TTTTTACT-TTTTT
8710350 ATTTATTATATATATATTATTTTTACTTTTTT
1 ATTTATTATATATATATTATTTTTACTTTTTT
8710382 A-TTATTAT
1 ATTTATTAT
8710390 TTGATTTATT
Statistics
Matches: 38, Mismatches: 1, Indels: 5
0.86 0.02 0.11
Matches are distributed among these distances:
31 7 0.18
32 12 0.32
33 13 0.34
34 6 0.16
ACGTcount: A:0.28, C:0.01, G:0.01, T:0.69
Consensus pattern (32 bp):
ATTTATTATATATATATTATTTTTACTTTTTT
Found at i:8710373 original size:25 final size:26
Alignment explanation
Indices: 8710347--8710429 Score: 70
Period size: 24 Copynumber: 3.3 Consensus size: 26
8710337 TTTTTATGTT
8710347 TTTATTTATTATATATATATTATTTTTA
1 TTTATTTATTATATATATATTA--TTTA
*
8710375 CTTT-TTTATTAT-TAT-T-TGATTTA
1 -TTTATTTATTATATATATATTATTTA
*
8710398 TTTGTTTTATT-TATATATATT-TTTA
1 TTT-ATTTATTATATATATATTATTTA
8710423 TTTATTT
1 TTTATTT
8710430 TACTCACTAT
Statistics
Matches: 46, Mismatches: 3, Indels: 15
0.72 0.05 0.23
Matches are distributed among these distances:
22 3 0.07
23 5 0.11
24 12 0.26
25 10 0.22
26 2 0.04
27 3 0.07
28 8 0.17
29 3 0.07
ACGTcount: A:0.25, C:0.01, G:0.02, T:0.71
Consensus pattern (26 bp):
TTTATTTATTATATATATATTATTTA
Found at i:8710380 original size:31 final size:33
Alignment explanation
Indices: 8710316--8710389 Score: 91
Period size: 31 Copynumber: 2.3 Consensus size: 33
8710306 TGTTTTATTA
* *
8710316 ATTTATATATATATTTATTATTTTTTATGTTTTT
1 ATTTAT-TATATATATATTATTTTTTATCTTTTT
8710350 ATTTATTATATATATATTA-TTTTTA-CTTTTT
1 ATTTATTATATATATATTATTTTTTATCTTTTT
8710381 -TATTATTAT
1 AT-TTATTAT
8710390 TTGATTTATT
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
30 1 0.03
31 12 0.32
32 6 0.16
33 12 0.32
34 6 0.16
ACGTcount: A:0.28, C:0.01, G:0.01, T:0.69
Consensus pattern (33 bp):
ATTTATTATATATATATTATTTTTTATCTTTTT
Found at i:8710398 original size:43 final size:39
Alignment explanation
Indices: 8710280--8710430 Score: 127
Period size: 39 Copynumber: 3.8 Consensus size: 39
8710270 AGATTACATA
* *
8710280 TATATATATATGTTATT-TTTATTA-TATGTTTTATTAATT
1 TATATATATAT-TTATTATTTTTTATTAT-TTTTATTTATT
*
8710319 TATATATATATTTATTATTTTTTA-TGTTTTTATTTATT
1 TATATATATATTTATTATTTTTTATTATTTTTATTTATT
8710357 ATATATATATTATTT-TTACTTTTTTATTATTATTTGATTTATT
1 -TATATATA-TATTTATTA-TTTTTTATTATT-TTT-ATTTATT
*
8710400 TGT-T-T-TATTTATATATATTTTTATTTATTTT
1 TATATATATATTTAT-TAT-TTTTTA-TTATTTT
8710431 ACTCACTATA
Statistics
Matches: 96, Mismatches: 5, Indels: 21
0.79 0.04 0.17
Matches are distributed among these distances:
38 20 0.21
39 32 0.33
40 23 0.24
41 9 0.09
42 5 0.05
43 7 0.07
ACGTcount: A:0.27, C:0.01, G:0.03, T:0.69
Consensus pattern (39 bp):
TATATATATATTTATTATTTTTTATTATTTTTATTTATT
Found at i:8713351 original size:31 final size:31
Alignment explanation
Indices: 8713283--8713352 Score: 79
Period size: 31 Copynumber: 2.3 Consensus size: 31
8713273 TTCGGATTTA
* **
8713283 GTTCGGGTTAAAATCGGATTGGTTGGTTTTC
1 GTTCGAGTTAAAATCGGATCAGTTGGTTTTC
* *
8713314 GGTCGAGTTAAAATTGGATCAGTTGG-TTTC
1 GTTCGAGTTAAAATCGGATCAGTTGGTTTTC
8713344 GATTCGAGT
1 G-TTCGAGT
8713353 AAATCATTGG
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
30 5 0.16
31 27 0.84
ACGTcount: A:0.20, C:0.10, G:0.31, T:0.39
Consensus pattern (31 bp):
GTTCGAGTTAAAATCGGATCAGTTGGTTTTC
Found at i:8716528 original size:71 final size:71
Alignment explanation
Indices: 8716412--8716560 Score: 289
Period size: 71 Copynumber: 2.1 Consensus size: 71
8716402 AAATGTTATA
8716412 TATTTGTATAACATTTTAAGTTGAACATATTAATATTTTAAATTGAAAATTACCTTAAATTAATC
1 TATTTGTATAACATTTTAAGTTGAACATATTAATATTTTAAATTGAAAATTACCTTAAATTAATC
8716477 TTAAAT
66 TTAAAT
8716483 TATTTGTATAACATTTTAAGTTGAACATATTAATATTTTAAATTGAAAATTACCTTAAATTAATC
1 TATTTGTATAACATTTTAAGTTGAACATATTAATATTTTAAATTGAAAATTACCTTAAATTAATC
8716548 TTAAAT
66 TTAAAT
*
8716554 TAATTGT
1 TATTTGT
8716561 CACACAATAG
Statistics
Matches: 77, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 77 1.00
ACGTcount: A:0.42, C:0.07, G:0.06, T:0.46
Consensus pattern (71 bp):
TATTTGTATAACATTTTAAGTTGAACATATTAATATTTTAAATTGAAAATTACCTTAAATTAATC
TTAAAT
Found at i:8717427 original size:31 final size:32
Alignment explanation
Indices: 8717383--8717456 Score: 105
Period size: 31 Copynumber: 2.3 Consensus size: 32
8717373 GGTAACCTTC
* * *
8717383 AGTGACCACATCTTAATTAAA-TAGAAACGAA
1 AGTGACCAAATCTTAATTAAACAAAAAACGAA
*
8717414 AGTGATCAAATCTTAATTAAACAAAAAACGAA
1 AGTGACCAAATCTTAATTAAACAAAAAACGAA
8717446 AGTGACCAAAT
1 AGTGACCAAAT
8717457 ATTATGTTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
31 19 0.51
32 18 0.49
ACGTcount: A:0.51, C:0.15, G:0.12, T:0.22
Consensus pattern (32 bp):
AGTGACCAAATCTTAATTAAACAAAAAACGAA
Found at i:8718354 original size:6 final size:6
Alignment explanation
Indices: 8718343--8718414 Score: 144
Period size: 6 Copynumber: 12.0 Consensus size: 6
8718333 AATCAACTAA
8718343 CATAAT CATAAT CATAAT CATAAT CATAAT CATAAT CATAAT CATAAT
1 CATAAT CATAAT CATAAT CATAAT CATAAT CATAAT CATAAT CATAAT
8718391 CATAAT CATAAT CATAAT CATAAT
1 CATAAT CATAAT CATAAT CATAAT
8718415 ATTCATGGTG
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 66 1.00
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (6 bp):
CATAAT
Found at i:8718523 original size:6 final size:6
Alignment explanation
Indices: 8718512--8718581 Score: 140
Period size: 6 Copynumber: 11.7 Consensus size: 6
8718502 AACACACCAT
8718512 TAATCA TAATCA TAATCA TAATCA TAATCA TAATCA TAATCA TAATCA
1 TAATCA TAATCA TAATCA TAATCA TAATCA TAATCA TAATCA TAATCA
8718560 TAATCA TAATCA TAATCA TAAT
1 TAATCA TAATCA TAATCA TAAT
8718582 ATTCATGGTG
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 64 1.00
ACGTcount: A:0.50, C:0.16, G:0.00, T:0.34
Consensus pattern (6 bp):
TAATCA
Found at i:8731769 original size:18 final size:18
Alignment explanation
Indices: 8731748--8731804 Score: 64
Period size: 18 Copynumber: 3.2 Consensus size: 18
8731738 TTTCAAATTC
8731748 TTATATAATTTAAATAAT
1 TTATATAATTTAAATAAT
*
8731766 TTATAAAATTTCAAAT--T
1 TTATATAATTT-AAATAAT
*
8731783 CTTATATGATTTAAATAAT
1 -TTATATAATTTAAATAAT
8731802 TTA
1 TTA
8731805 AACAAATACA
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
17 5 0.16
18 22 0.69
19 5 0.16
ACGTcount: A:0.46, C:0.04, G:0.02, T:0.49
Consensus pattern (18 bp):
TTATATAATTTAAATAAT
Found at i:8731774 original size:36 final size:36
Alignment explanation
Indices: 8731733--8731804 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
8731723 TGTAATTTTT
8731733 TAAAATTTCAAATTCTTATATAATTTAAATAATTTA
1 TAAAATTTCAAATTCTTATATAATTTAAATAATTTA
*
8731769 TAAAATTTCAAATTCTTATATGATTTAAATAATTTA
1 TAAAATTTCAAATTCTTATATAATTTAAATAATTTA
8731805 AACAAATACA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.46, C:0.06, G:0.01, T:0.47
Consensus pattern (36 bp):
TAAAATTTCAAATTCTTATATAATTTAAATAATTTA
Found at i:8733698 original size:31 final size:31
Alignment explanation
Indices: 8733610--8733744 Score: 145
Period size: 31 Copynumber: 4.4 Consensus size: 31
8733600 TTTAGACATT
* * *
8733610 ATATTAATTTAACCC-TAAACGTTAGATAAA
1 ATATCAATTTGACCCTTAAACTTTAGATAAA
*
8733640 ATA-CTAATTTGA-CCTTAAATTTTAGATAAA
1 ATATC-AATTTGACCCTTAAACTTTAGATAAA
8733670 ATA-CTAATTTGACCCTTGAAA-TTTAGATAAA
1 ATATC-AATTTGACCCTT-AAACTTTAGATAAA
* * *
8733701 ATATCAATTAGATCCTTAAACTTTATATAAA
1 ATATCAATTTGACCCTTAAACTTTAGATAAA
8733732 ATATCAATTTGAC
1 ATATCAATTTGAC
8733745 TCATAAATTC
Statistics
Matches: 90, Mismatches: 9, Indels: 11
0.82 0.08 0.10
Matches are distributed among these distances:
29 2 0.02
30 37 0.41
31 47 0.52
32 4 0.04
ACGTcount: A:0.44, C:0.13, G:0.07, T:0.37
Consensus pattern (31 bp):
ATATCAATTTGACCCTTAAACTTTAGATAAA
Found at i:8734027 original size:18 final size:18
Alignment explanation
Indices: 8734004--8734038 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
8733994 AACAAAAATC
8734004 TAAATTTATATCATAATT
1 TAAATTTATATCATAATT
8734022 TAAATTTATATCATAAT
1 TAAATTTATATCATAAT
8734039 ACATTTATAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.46, C:0.06, G:0.00, T:0.49
Consensus pattern (18 bp):
TAAATTTATATCATAATT
Found at i:8734046 original size:16 final size:17
Alignment explanation
Indices: 8734004--8734047 Score: 63
Period size: 18 Copynumber: 2.6 Consensus size: 17
8733994 AACAAAAATC
8734004 TAAATTTATATCATAATT
1 TAAATTTATATCATAA-T
8734022 TAAATTTATATCATAA-
1 TAAATTTATATCATAAT
*
8734038 TACATTTATA
1 TAAATTTATA
8734048 GTATGATGAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 9 0.36
18 16 0.64
ACGTcount: A:0.45, C:0.07, G:0.00, T:0.48
Consensus pattern (17 bp):
TAAATTTATATCATAAT
Found at i:8741372 original size:14 final size:14
Alignment explanation
Indices: 8741353--8741383 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
8741343 TTTGTTGAAC
8741353 CGTTCGCAGAAGAA
1 CGTTCGCAGAAGAA
8741367 CGTTCGCAGAAGAA
1 CGTTCGCAGAAGAA
8741381 CGT
1 CGT
8741384 CGCCTACGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.32, C:0.23, G:0.29, T:0.16
Consensus pattern (14 bp):
CGTTCGCAGAAGAA
Found at i:8742622 original size:169 final size:167
Alignment explanation
Indices: 8742346--8742682 Score: 640
Period size: 169 Copynumber: 2.0 Consensus size: 167
8742336 TGAAATTTTA
8742346 TCCCATATAACTATTCTGCTTCTGGACTTGTCATGGTATTTTGTTTGCTTATCACTATCCATGCT
1 TCCCATATAACTATTCTGCTTCTGGACTTGTCATGGTATTTTGTTTGCTTATCACTATCCATGCT
8742411 TGAGGACAAGCAATAGCTTAAGTTTGGGGGTGTGATAACTCCTTGAAAAGGTCATATTTT-GGAC
66 TGAGGACAAGCAATAGCTTAAGTTTGGGGGTGTGATAACTCCTTGAAAAGGTCATATTTTGGGAC
8742475 CTTTTCACTTAAGTTATTGAATGTCTAAGAGCCCATT
131 CTTTTCACTTAAGTTATTGAATGTCTAAGAGCCCATT
8742512 TCCCATATAACTATTCTGCTTCTGGACTTGTCATGGTATTTTTGTTTTGCTTATCACTATCCATT
1 TCCCATATAACTATTCTGCTTCTGGACTTGTCATGGTA-TTTTG-TTTGCTTATCACTATCCA-T
8742577 GCTTGAGGACAAGCAATAGCTTAAGTTTGGGGGTGTGATAACTCCTTGAAAAGGTCATATTTTGG
63 GCTTGAGGACAAGCAATAGCTTAAGTTTGGGGGTGTGATAACTCCTTGAAAAGGTCATATTTTGG
8742642 GACCTTTTCACTTAAGTTATTGAATGTCTAAGAGCCCATT
128 GACCTTTTCACTTAAGTTATTGAATGTCTAAGAGCCCATT
8742682 T
1 T
8742683 AGGACCATTT
Statistics
Matches: 167, Mismatches: 0, Indels: 4
0.98 0.00 0.02
Matches are distributed among these distances:
166 38 0.23
167 5 0.03
168 18 0.11
169 64 0.38
170 42 0.25
ACGTcount: A:0.24, C:0.18, G:0.19, T:0.39
Consensus pattern (167 bp):
TCCCATATAACTATTCTGCTTCTGGACTTGTCATGGTATTTTGTTTGCTTATCACTATCCATGCT
TGAGGACAAGCAATAGCTTAAGTTTGGGGGTGTGATAACTCCTTGAAAAGGTCATATTTTGGGAC
CTTTTCACTTAAGTTATTGAATGTCTAAGAGCCCATT
Found at i:8742703 original size:20 final size:20
Alignment explanation
Indices: 8742678--8742720 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
8742668 TCTAAGAGCC
*
8742678 CATTTAGGACCATTTAGATG
1 CATTTAGGACCATATAGATG
* *
8742698 CATTTAGGAGCATATAGTTG
1 CATTTAGGACCATATAGATG
8742718 CAT
1 CAT
8742721 GTGGTGGATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (20 bp):
CATTTAGGACCATATAGATG
Found at i:8745060 original size:68 final size:68
Alignment explanation
Indices: 8744951--8745086 Score: 272
Period size: 68 Copynumber: 2.0 Consensus size: 68
8744941 AATAGTGGGA
8744951 TCGCCAGATTAATTGCTCGAGTGGTATCCTCTACAGTACCGGGGGTAGGTCGCCATGCACGCCCG
1 TCGCCAGATTAATTGCTCGAGTGGTATCCTCTACAGTACCGGGGGTAGGTCGCCATGCACGCCCG
8745016 GCG
66 GCG
8745019 TCGCCAGATTAATTGCTCGAGTGGTATCCTCTACAGTACCGGGGGTAGGTCGCCATGCACGCCCG
1 TCGCCAGATTAATTGCTCGAGTGGTATCCTCTACAGTACCGGGGGTAGGTCGCCATGCACGCCCG
8745084 GCG
66 GCG
8745087 ACCTACCAGG
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
68 68 1.00
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.22
Consensus pattern (68 bp):
TCGCCAGATTAATTGCTCGAGTGGTATCCTCTACAGTACCGGGGGTAGGTCGCCATGCACGCCCG
GCG
Found at i:8745154 original size:28 final size:29
Alignment explanation
Indices: 8745065--8745179 Score: 178
Period size: 29 Copynumber: 4.0 Consensus size: 29
8745055 TACCGGGGGT
8745065 AGGTCGCCATGCACGCCCGGCGACCTACC
1 AGGTCGCCATGCACGCCCGGCGACCTACC
8745094 AGGTCGCCATGCACGCCCGGCGACCTACC
1 AGGTCGCCATGCACGCCCGGCGACCTACC
***
8745123 AGGTCGCCATGCACG-CCGGCGACCTGGT
1 AGGTCGCCATGCACGCCCGGCGACCTACC
* *
8745151 AGGTCGCCATGCATGCCCTGCGACCTACC
1 AGGTCGCCATGCACGCCCGGCGACCTACC
8745180 TCAACCTCCA
Statistics
Matches: 77, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
28 24 0.31
29 53 0.69
ACGTcount: A:0.17, C:0.42, G:0.29, T:0.13
Consensus pattern (29 bp):
AGGTCGCCATGCACGCCCGGCGACCTACC
Found at i:8745157 original size:57 final size:58
Alignment explanation
Indices: 8745065--8745179 Score: 178
Period size: 57 Copynumber: 2.0 Consensus size: 58
8745055 TACCGGGGGT
8745065 AGGTCGCCATGCACGCCCGGCGACCTACCAGGTCGCCATGCACGCCCGGCGACCTACC
1 AGGTCGCCATGCACGCCCGGCGACCTACCAGGTCGCCATGCACGCCCGGCGACCTACC
*** * *
8745123 AGGTCGCCATGCACG-CCGGCGACCTGGTAGGTCGCCATGCATGCCCTGCGACCTACC
1 AGGTCGCCATGCACGCCCGGCGACCTACCAGGTCGCCATGCACGCCCGGCGACCTACC
8745180 TCAACCTCCA
Statistics
Matches: 52, Mismatches: 5, Indels: 1
0.90 0.09 0.02
Matches are distributed among these distances:
57 37 0.71
58 15 0.29
ACGTcount: A:0.17, C:0.42, G:0.29, T:0.13
Consensus pattern (58 bp):
AGGTCGCCATGCACGCCCGGCGACCTACCAGGTCGCCATGCACGCCCGGCGACCTACC
Found at i:8745200 original size:10 final size:10
Alignment explanation
Indices: 8745187--8745269 Score: 57
Period size: 10 Copynumber: 8.3 Consensus size: 10
8745177 ACCTCAACCT
8745187 CCATGCACGC
1 CCATGCACGC
8745197 CCATGCACGC
1 CCATGCACGC
*
8745207 CCA-ACGAC-C
1 CCATGC-ACGC
*
8745216 TCCATGCATGC
1 -CCATGCACGC
*
8745227 CCAGGCACGC
1 CCATGCACGC
*
8745237 CCA-ACGAC-C
1 CCATGC-ACGC
*
8745246 TCCATGCACGG
1 -CCATGCACGC
8745257 CCATGCACGC
1 CCATGCACGC
8745267 CCA
1 CCA
8745270 ACGGCCTCCA
Statistics
Matches: 56, Mismatches: 9, Indels: 16
0.69 0.11 0.20
Matches are distributed among these distances:
9 4 0.07
10 49 0.88
11 3 0.05
ACGTcount: A:0.23, C:0.48, G:0.19, T:0.10
Consensus pattern (10 bp):
CCATGCACGC
Found at i:8745217 original size:30 final size:30
Alignment explanation
Indices: 8745183--8745289 Score: 178
Period size: 30 Copynumber: 3.6 Consensus size: 30
8745173 ACCTACCTCA
8745183 ACCTCCATGCACGCCCATGCACGCCCAACG
1 ACCTCCATGCACGCCCATGCACGCCCAACG
* *
8745213 ACCTCCATGCATGCCCAGGCACGCCCAACG
1 ACCTCCATGCACGCCCATGCACGCCCAACG
*
8745243 ACCTCCATGCACGGCCATGCACGCCCAACG
1 ACCTCCATGCACGCCCATGCACGCCCAACG
*
8745273 GCCTCCATGCACGCCCA
1 ACCTCCATGCACGCCCA
8745290 GCTCGCCAAA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 70 1.00
ACGTcount: A:0.22, C:0.49, G:0.19, T:0.10
Consensus pattern (30 bp):
ACCTCCATGCACGCCCATGCACGCCCAACG
Found at i:8749022 original size:60 final size:59
Alignment explanation
Indices: 8748950--8749420 Score: 637
Period size: 60 Copynumber: 7.9 Consensus size: 59
8748940 TTTATAAGAT
* * *
8748950 TTAGTAATGATTAGTAATGATGAAATTATTATTAA-TATTTAATGATTTAATAGTAATTTGA
1 TTAGTAATGATTAGTAATAATGAAATTATTATTAATTATGT-ATGATTTGATAGTAA--TGA
8749011 -TAGTAATGATTAGTAATAATGAAATTATTATTAATTATGTATGA-TTGATAGTAATGA
1 TTAGTAATGATTAGTAATAATGAAATTATTATTAATTATGTATGATTTGATAGTAATGA
8749068 TTTAGTAATGATTAGTAATAATGAAATTATTATTAATTATGTATGATTTGATAGTAATGA
1 -TTAGTAATGATTAGTAATAATGAAATTATTATTAATTATGTATGATTTGATAGTAATGA
8749128 TTTAGTAATGATTAGTAATAATGAAATTATTATTAATTATGTATGATTTGATAGTAATGA
1 -TTAGTAATGATTAGTAATAATGAAATTATTATTAATTATGTATGATTTGATAGTAATGA
* *
8749188 TTTAGTAATGATTTGATAGTAATAATGAAATTATTATTAA-TATTTAATGATTTAATAGTAATTT
1 -TTAGTAATGA--T--TAGTAATAATGAAATTATTATTAATTATGT-ATGATTTGATAGTAA--T
8749252 GA
58 GA
8749254 -TAGTAATGA-T--TAATAATG-AA--ATTA-TAATTATGTATGATTTG-TAGTAATGA
1 TTAGTAATGATTAGTAATAATGAAATTATTATTAATTATGTATGATTTGATAGTAATGA
8749304 TTTAGTAATGATTAGTAATAATGAAATTATTATTAATTATGTATGATTTGATAGTAATGA
1 -TTAGTAATGATTAGTAATAATGAAATTATTATTAATTATGTATGATTTGATAGTAATGA
* *
8749364 TTTAGTAATGATTAGTAATAATGAAATTATTATTAA-TATTTAATGATTTAATAGTAA
1 -TTAGTAATGATTAGTAATAATGAAATTATTATTAATTATGT-ATGATTTGATAGTAA
8749421 AGAGAGAGGT
Statistics
Matches: 378, Mismatches: 9, Indels: 47
0.87 0.02 0.11
Matches are distributed among these distances:
50 3 0.01
52 15 0.04
53 11 0.03
54 8 0.02
55 8 0.02
56 4 0.01
57 11 0.03
58 4 0.01
59 75 0.20
60 180 0.48
61 4 0.01
62 1 0.00
63 4 0.01
64 47 0.12
66 3 0.01
ACGTcount: A:0.41, C:0.00, G:0.14, T:0.45
Consensus pattern (59 bp):
TTAGTAATGATTAGTAATAATGAAATTATTATTAATTATGTATGATTTGATAGTAATGA
Found at i:8749189 original size:14 final size:14
Alignment explanation
Indices: 8749170--8749210 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
8749160 TTAATTATGT
8749170 ATGATTTGATAGTA
1 ATGATTTGATAGTA
8749184 ATGA-TT--TAGTA
1 ATGATTTGATAGTA
8749195 ATGATTTGATAGTA
1 ATGATTTGATAGTA
8749209 AT
1 AT
8749211 AATGAAATTA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
11 9 0.38
12 2 0.08
13 2 0.08
14 11 0.46
ACGTcount: A:0.37, C:0.00, G:0.20, T:0.44
Consensus pattern (14 bp):
ATGATTTGATAGTA
Found at i:8749204 original size:25 final size:25
Alignment explanation
Indices: 8749170--8749376 Score: 83
Period size: 25 Copynumber: 8.2 Consensus size: 25
8749160 TTAATTATGT
8749170 ATGATTTGATAGTAATGATTTAGTA
1 ATGATTTGATAGTAATGATTTAGTA
* ** * *
8749195 ATGATTTGATAGTAATAATGAAATT
1 ATGATTTGATAGTAATGATTTAGTA
* * * *
8749220 ATTA-TTAATATTTAATGATTTAATA
1 ATGATTTGATA-GTAATGATTTAGTA
* * *
8749245 GTAATTTGATAGTAATGA-TTAATA
1 ATGATTTGATAGTAATGATTTAGTA
*
8749269 ATGAAATTATAATTATGT-ATGATTTGTAGTA
1 ATG--ATT-TGA-TA-GTAATGA-TT-TAGTA
8749300 ATGA-TT--TAGTAATGA-TTAGTA
1 ATGATTTGATAGTAATGATTTAGTA
* * * * *
8749321 AT-A-ATGAAATTATTATTAATTATGT-
1 ATGATTTGATAGTA--ATGATTTA-GTA
8749346 ATGATTTGATAGTAATGATTTAGTA
1 ATGATTTGATAGTAATGATTTAGTA
8749371 ATGATT
1 ATGATT
8749377 AGTAATAATG
Statistics
Matches: 133, Mismatches: 29, Indels: 40
0.66 0.14 0.20
Matches are distributed among these distances:
20 2 0.02
21 7 0.05
22 4 0.03
23 2 0.02
24 23 0.17
25 57 0.43
26 11 0.08
27 9 0.07
28 7 0.05
29 3 0.02
30 1 0.01
31 7 0.05
ACGTcount: A:0.40, C:0.00, G:0.15, T:0.45
Consensus pattern (25 bp):
ATGATTTGATAGTAATGATTTAGTA
Found at i:8749305 original size:13 final size:13
Alignment explanation
Indices: 8749287--8749327 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
8749277 ATAATTATGT
8749287 ATGATTTGTAGTA
1 ATGATTTGTAGTA
8749300 ATGA-TT-TAGTA
1 ATGATTTGTAGTA
* *
8749311 ATGATTAGTAATA
1 ATGATTTGTAGTA
8749324 ATGA
1 ATGA
8749328 AATTATTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
11 9 0.38
12 3 0.12
13 12 0.50
ACGTcount: A:0.39, C:0.00, G:0.20, T:0.41
Consensus pattern (13 bp):
ATGATTTGTAGTA
Found at i:8749340 original size:236 final size:237
Alignment explanation
Indices: 8748947--8749420 Score: 800
Period size: 236 Copynumber: 2.0 Consensus size: 237
8748937 GTATTTATAA
*
8748947 GATTTAGTAATGATTAGTAATGATGAAATTATTATTAATATTTAATGATTTAATAGTAATTTGAT
1 GATTTAGTAATGATTAGTAATAATGAAATTATTATTAATATTTAATGATTTAATAGTAATTTGAT
8749012 AGTAATGATTAGTAATAATGAAATTATTATTAATTATGTATGATTGATAGTAATGATTTAGTAAT
66 AGTAATGATTA-TAATAATGAAA-TATTATTAATTATGTATGATTGATAGTAATGATTTAGTAAT
8749077 GATTAGTAATAATGAAATTATTATTAATTATGTATGATTTGATAGTAATGATTTAGTAATGATTA
129 GATTAGTAATAATGAAATTATTATTAATTATGTATGATTTGATAGTAATGATTTAGTAATGATTA
*
8749142 GTAATAATGAAATTATTATTAATTATGT-ATGATTTGATAGTAAT
194 GTAATAATGAAATTATTATTAA-TATGTAATGATTTAATAGTAAT
8749186 GATTTAGTAATGATTTGATAGTAATAATGAAATTATTATTAATATTTAATGATTTAATAGTAATT
1 GATTTAGTAATGA--T--TAGTAATAATGAAATTATTATTAATATTTAATGATTTAATAGTAATT
8749251 TGATAGTAATGA-T-TAATAATG-AA-ATTA-TAATTATGTATGATTTG-TAGTAATGATTTAGT
62 TGATAGTAATGATTATAATAATGAAATATTATTAATTATGTATGA-TTGATAGTAATGATTTAGT
8749310 AATGATTAGTAATAATGAAATTATTATTAATTATGTATGATTTGATAGTAATGATTTAGTAATGA
126 AATGATTAGTAATAATGAAATTATTATTAATTATGTATGATTTGATAGTAATGATTTAGTAATGA
*
8749375 TTAGTAATAATGAAATTATTATTAATATTTAATGATTTAATAGTAA
191 TTAGTAATAATGAAATTATTATTAATATGTAATGATTTAATAGTAA
8749421 AGAGAGAGGT
Statistics
Matches: 226, Mismatches: 3, Indels: 15
0.93 0.01 0.06
Matches are distributed among these distances:
235 4 0.02
236 132 0.58
237 7 0.03
239 15 0.07
240 8 0.04
241 1 0.00
242 1 0.00
243 58 0.26
ACGTcount: A:0.41, C:0.00, G:0.14, T:0.45
Consensus pattern (237 bp):
GATTTAGTAATGATTAGTAATAATGAAATTATTATTAATATTTAATGATTTAATAGTAATTTGAT
AGTAATGATTATAATAATGAAATATTATTAATTATGTATGATTGATAGTAATGATTTAGTAATGA
TTAGTAATAATGAAATTATTATTAATTATGTATGATTTGATAGTAATGATTTAGTAATGATTAGT
AATAATGAAATTATTATTAATATGTAATGATTTAATAGTAAT
Found at i:8749609 original size:19 final size:20
Alignment explanation
Indices: 8749585--8749633 Score: 73
Period size: 19 Copynumber: 2.5 Consensus size: 20
8749575 ATTTAAATAT
*
8749585 TAATGATTTGATGATT-TAG
1 TAATGATTTGATAATTATAG
8749604 TAATGATTTGATAATTCATAG
1 TAATGATTTGATAATT-ATAG
8749625 TAATGATTT
1 TAATGATTT
8749634 AGTAATAATC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 15 0.56
21 12 0.44
ACGTcount: A:0.35, C:0.02, G:0.16, T:0.47
Consensus pattern (20 bp):
TAATGATTTGATAATTATAG
Found at i:8749656 original size:26 final size:26
Alignment explanation
Indices: 8749626--8749790 Score: 84
Period size: 26 Copynumber: 6.5 Consensus size: 26
8749616 AATTCATAGT
8749626 AATGATTTAGTAATAATCATTATAAA
1 AATGATTTAGTAATAATCATTATAAA
*
8749652 AATGA-TT--TAATAATGATT-T--A
1 AATGATTTAGTAATAATCATTATAAA
* * * * **
8749672 AAT-ATTTAATGATTTGATGATT-TAGT
1 AATGATTTAGT-A-ATAATCATTATAAA
**
8749698 AATGATTT-GATAAT-ATCAAATTATAGT
1 AATGATTTAG-TAATAATC--ATTATAAA
*
8749725 AATGATTT-G-ATATAAATCATTATAAT
1 AATGATTTAGTA-ATAA-TCATTATAAA
8749751 AATGATTTAGTAATAATCATTATAAA
1 AATGATTTAGTAATAATCATTATAAA
*
8749777 AATGATTTAATAAT
1 AATGATTTAGTAAT
8749791 GATTTAAATA
Statistics
Matches: 112, Mismatches: 10, Indels: 34
0.72 0.06 0.22
Matches are distributed among these distances:
19 1 0.01
20 6 0.05
22 2 0.02
23 11 0.10
24 10 0.09
25 4 0.04
26 51 0.46
27 24 0.21
28 3 0.03
ACGTcount: A:0.45, C:0.02, G:0.10, T:0.42
Consensus pattern (26 bp):
AATGATTTAGTAATAATCATTATAAA
Found at i:8749724 original size:27 final size:26
Alignment explanation
Indices: 8749694--8750099 Score: 109
Period size: 26 Copynumber: 16.5 Consensus size: 26
8749684 TTTGATGATT
*
8749694 TAGTAATGATTTGATA-ATATCAAATTA
1 TAGTAATGATTTGATATAAATC--ATTA
8749721 TAGTAATGATTTGATATAAATCATTA
1 TAGTAATGATTTGATATAAATCATTA
*
8749747 TAATAATGATTT-AGTA-ATAATCATTA
1 TAGTAATGATTTGA-TATA-AATCATTA
** *
8749773 TAAAAATGATTT-A-AT-AATGATT-
1 TAGTAATGATTTGATATAAATCATTA
* ** *
8749795 TA--AAT-ATTTAATGATTTGATGATT-
1 TAGTAATGATTTGAT-A-TAAATCATTA
8749819 TAGTAATGATTTGATA-ATAATCATTA
1 TAGTAATGATTTGATATA-AATCATTA
8749845 TAGTAATGATTT-AGTA-ATAATCATTA
1 TAGTAATGATTTGA-TATA-AATCATTA
** *
8749871 TAAAAATGATTT-A-AT-AATGATT-
1 TAGTAATGATTTGATATAAATCATTA
* ** *
8749893 TA--AAT-ATTTAATGATTTGATGATT-
1 TAGTAATGATTTGAT-A-TAAATCATTA
* **
8749917 TAGTAATGATTTGATA-ATATCAAAA
1 TAGTAATGATTTGATATAAATCATTA
8749942 TAGTAATGA-TTG-TAT-AATC-TTA
1 TAGTAATGATTTGATATAAATCATTA
*
8749964 TAATAATGATTT-AGTA-ATAATCATTA
1 TAGTAATGATTTGA-TATA-AATCATTA
** *
8749990 TAAAAATGATTT-A-AT-AATGATT-
1 TAGTAATGATTTGATATAAATCATTA
* ** *
8750012 TA--AAT-ATTTAATGATTTGATGATT-
1 TAGTAATGATTTGAT-A-TAAATCATTA
8750036 TAGTAATGATTTGATA-ATAATCATTA
1 TAGTAATGATTTGATATA-AATCATTA
8750062 TAGTAATGATTT-AGTA-ATAATCATTA
1 TAGTAATGATTTGA-TATA-AATCATTA
**
8750088 TAAAAATGATTT
1 TAGTAATGATTT
8750100 AATAATGATT
Statistics
Matches: 303, Mismatches: 32, Indels: 89
0.71 0.08 0.21
Matches are distributed among these distances:
19 12 0.04
20 12 0.04
22 18 0.06
23 28 0.09
24 35 0.12
25 27 0.09
26 133 0.44
27 34 0.11
28 4 0.01
ACGTcount: A:0.44, C:0.02, G:0.11, T:0.43
Consensus pattern (26 bp):
TAGTAATGATTTGATATAAATCATTA
Done.