Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001547.1 Hibiscus syriacus cultivar Beakdansim tig00003041_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10425128
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 48 of 51
Found at i:9331606 original size:21 final size:21
Alignment explanation
Indices: 9331581--9331626 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
9331571 ACTTATCAAA
*
9331581 TTAATTAATT-AATTTTAATAT
1 TTAATTAATTCAATTCTAA-AT
*
9331602 TTAATTGATTCAATTCTAAAT
1 TTAATTAATTCAATTCTAAAT
9331623 TTAA
1 TTAA
9331627 AATTTTAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 15 0.68
22 7 0.32
ACGTcount: A:0.41, C:0.04, G:0.02, T:0.52
Consensus pattern (21 bp):
TTAATTAATTCAATTCTAAAT
Found at i:9336534 original size:26 final size:26
Alignment explanation
Indices: 9336488--9336581 Score: 152
Period size: 26 Copynumber: 3.6 Consensus size: 26
9336478 CAAATTAGCA
*
9336488 GCCCCATTTGTCATTTAGAAAACAACC
1 GCCCCATTTG-CATTTAGAAAACAGCC
*
9336515 GCCCCATTTGCATTTAGAAAACAGCT
1 GCCCCATTTGCATTTAGAAAACAGCC
*
9336541 GTCCCATTTGCATTTAGAAAACAGCC
1 GCCCCATTTGCATTTAGAAAACAGCC
9336567 GCCCCATTTGCATTT
1 GCCCCATTTGCATTT
9336582 TTATTATTGA
Statistics
Matches: 62, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
26 52 0.84
27 10 0.16
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.29
Consensus pattern (26 bp):
GCCCCATTTGCATTTAGAAAACAGCC
Found at i:9343654 original size:22 final size:22
Alignment explanation
Indices: 9343629--9343729 Score: 94
Period size: 22 Copynumber: 4.5 Consensus size: 22
9343619 TTAAAATAAA
*
9343629 TTATTATAAAATATGGATTGAT
1 TTATTTTAAAATATGGATTGAT
** * *
9343651 TTATTTTAAAATAATTTATTTTAA
1 TTATTTTAAAAT-ATGGA-TTGAT
* * * *
9343675 ATAATTTATTAGTATGGATTGAT
1 TTATTTTA-AAATATGGATTGAT
9343698 TTATTTTAAAATATGGATTGAT
1 TTATTTTAAAATATGGATTGAT
9343720 TTATTTTAAA
1 TTATTTTAAA
9343730 TAATTTATTA
Statistics
Matches: 59, Mismatches: 17, Indels: 6
0.72 0.21 0.07
Matches are distributed among these distances:
22 33 0.56
23 12 0.20
24 12 0.20
25 2 0.03
ACGTcount: A:0.39, C:0.00, G:0.10, T:0.51
Consensus pattern (22 bp):
TTATTTTAAAATATGGATTGAT
Found at i:9343678 original size:14 final size:15
Alignment explanation
Indices: 9343567--9343684 Score: 139
Period size: 15 Copynumber: 7.5 Consensus size: 15
9343557 TAATAAGGTT
9343567 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
9343582 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
*
9343597 ATTTATTATAAAATA
1 ATTTATTTTAAAATA
9343612 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
* *
9343627 AATTATTATAAAATATGGA
1 ATTTATT-TTAAA-AT--A
9343646 TTGATTTATTTTAAAATA
1 ---ATTTATTTTAAAATA
9343664 ATTTATTTT-AAATA
1 ATTTATTTTAAAATA
9343678 ATTTATT
1 ATTTATT
9343685 AGTATGGATT
Statistics
Matches: 90, Mismatches: 6, Indels: 15
0.81 0.05 0.14
Matches are distributed among these distances:
14 12 0.13
15 58 0.64
16 4 0.04
17 2 0.02
18 1 0.01
19 1 0.01
20 2 0.02
21 4 0.04
22 6 0.07
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.52
Consensus pattern (15 bp):
ATTTATTTTAAAATA
Found at i:9343702 original size:32 final size:32
Alignment explanation
Indices: 9343664--9344074 Score: 356
Period size: 32 Copynumber: 13.3 Consensus size: 32
9343654 TTTTAAAATA
9343664 ATTTATTTTAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
9343696 ATTTA-TTT---TAA---A--A-TATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
9343718 ATTTATTTTAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
* ** * *
9343750 ATTTATTTTAAAATATAGATTTATTTA-TTTTAAATA
1 ATTTATTTT--AA-ATA-ATTTA-TTAGTATGGATTG
* * * *
9343786 ATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
1 ATTTATT--T-T-AAATAATTTA--TT--AGTATGGATTG
*
9343826 ATTTATTATT--AT-A---GTT-GTATGGATTG
1 ATTTATT-TTAAATAATTTATTAGTATGGATTG
*
9343852 ATTTATTTTAAATAATTTATTAGTATAGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
9343884 ATTTA-TTT---TAA---A--A-TATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
9343906 ATTTATTTTAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
*
9343938 ATTTATTTTAAATAATTTATTAGTACGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
*
9343970 ATTTATTTTATATAATTTATTAGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
* *
9344002 ATTTATTTTATATAATTTATTAGTATGGAATG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
*
9344034 ATTTATTTTAAATAATTTATTTGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
9344066 ATTTATTTT
1 ATTTATTTT
9344075 TAAAATATGG
Statistics
Matches: 312, Mismatches: 28, Indels: 78
0.75 0.07 0.19
Matches are distributed among these distances:
22 27 0.09
23 8 0.03
25 4 0.01
26 22 0.07
27 2 0.01
28 7 0.02
29 4 0.01
31 10 0.03
32 176 0.56
34 3 0.01
35 4 0.01
36 21 0.07
37 7 0.02
38 3 0.01
39 3 0.01
40 11 0.04
ACGTcount: A:0.34, C:0.00, G:0.12, T:0.54
Consensus pattern (32 bp):
ATTTATTTTAAATAATTTATTAGTATGGATTG
Found at i:9343720 original size:69 final size:67
Alignment explanation
Indices: 9343582--9343739 Score: 212
Period size: 69 Copynumber: 2.3 Consensus size: 67
9343572 TTTTAAAATA
9343582 ATTTATTTTAAAATAATTTATTATAAAATAATTTATTTTAAAATAAATTATTATAAAATATGGAT
1 ATTTATTTTAAAATAATTTATTATAAAATAATTTATTTTAAAATAAATTATTATAAAATATGGAT
9343647 TG
66 TG
* ** * * * *
9343649 ATTTATTTTAAAATAATTTATT-TTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATG
1 ATTTATTTTAAAATAATTTATTATAAAATAATTTATT--T-TAAAATAAATTATTATAAAATATG
9343713 GATTG
63 GATTG
9343718 ATTTATTTT-AAATAATTTATTA
1 ATTTATTTTAAAATAATTTATTA
9343740 GTATGGATTG
Statistics
Matches: 80, Mismatches: 7, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
66 13 0.16
67 22 0.28
68 13 0.16
69 32 0.40
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.51
Consensus pattern (67 bp):
ATTTATTTTAAAATAATTTATTATAAAATAATTTATTTTAAAATAAATTATTATAAAATATGGAT
TG
Found at i:9343729 original size:54 final size:54
Alignment explanation
Indices: 9343664--9344190 Score: 404
Period size: 54 Copynumber: 9.4 Consensus size: 54
9343654 TTTTAAAATA
9343664 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
* *
9343718 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATAGATTT
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
9343772 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
* *
9343826 ATTTATTATT--AT-A---GTT-GTATGGATTGATTTATTTT-AAATA---ATTT
1 ATTTATT-TTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
* * * * *
9343870 A-TTAGTATAGATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATGG
1 ATTTATTTTA-AATAATTTA--TT--AGTATGGATTGATTTA-TTT---TAA---A--A-TATGG
9343934 ATTG
51 ATTG
*
9343938 ATTTATTTTAAATAATTTATTAGTACGGATTGATTTATTTTATATAATTTATTAGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTA--TT-T-TAA---A--A-TATGGATTG
* * * *
9344002 ATTTATTTTATATAATTTATTAGTATGGAATGATTTATTTTAAATAATTTATTTGTATGG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTT-AA-AA--TA--TGGATTG
* * * * ***
9344062 ATTGA-TTT--AT-TTTTA-AAATATGGATTGATTTATTATTGTAGTTGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTA-T-TT-TA-AAATATGGATTG
* *
9344115 ATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATAGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
9344169 ATTTATTTTAAATAATTTATTA
1 ATTTATTTTAAATAATTTATTA
9344191 TTGTAGTTGT
Statistics
Matches: 387, Mismatches: 43, Indels: 86
0.75 0.08 0.17
Matches are distributed among these distances:
42 1 0.00
43 4 0.01
44 4 0.01
45 1 0.00
46 1 0.00
47 5 0.01
48 19 0.05
49 2 0.01
51 2 0.01
52 1 0.00
53 11 0.03
54 158 0.41
55 23 0.06
56 9 0.02
57 11 0.03
58 18 0.05
59 6 0.02
60 10 0.03
61 3 0.01
62 3 0.01
64 70 0.18
65 5 0.01
66 3 0.01
68 11 0.03
69 6 0.02
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (54 bp):
ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
Found at i:9343807 original size:18 final size:18
Alignment explanation
Indices: 9343786--9343833 Score: 51
Period size: 22 Copynumber: 2.4 Consensus size: 18
9343776 ATTTTAAATA
*
9343786 ATTTATTAGTATGGATTG
1 ATTTATTAATATGGATTG
9343804 ATTTATTTTAAAATATGGATTG
1 ATTTA--TT--AATATGGATTG
9343826 ATTTATTA
1 ATTTATTA
9343834 TTATAGTTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 8
0.74 0.03 0.24
Matches are distributed among these distances:
18 6 0.24
20 4 0.16
22 15 0.60
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.52
Consensus pattern (18 bp):
ATTTATTAATATGGATTG
Found at i:9343820 original size:22 final size:22
Alignment explanation
Indices: 9343795--9343863 Score: 84
Period size: 22 Copynumber: 3.0 Consensus size: 22
9343785 AATTTATTAG
9343795 TATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAAA
**
9343817 TATGGATTGATTTATTATTATAGTTG
1 TATGGATTGATTTATT-TTA-A--AA
9343843 TATGGATTGATTTATTTTAAA
1 TATGGATTGATTTATTTTAAA
9343864 TAATTTATTA
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
22 16 0.40
23 3 0.08
24 2 0.05
25 3 0.08
26 16 0.40
ACGTcount: A:0.32, C:0.00, G:0.16, T:0.52
Consensus pattern (22 bp):
TATGGATTGATTTATTTTAAAA
Found at i:9343858 original size:134 final size:144
Alignment explanation
Indices: 9343709--9344045 Score: 489
Period size: 134 Copynumber: 2.4 Consensus size: 144
9343699 TATTTTAAAA
*
9343709 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATAGATTTAT
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATAGATTGAT
9343774 TTATTTTAAATAATTTATTAGTATGGATTGATTTATTTT-A-AA-A-TA-T-GGATTGATTTA-T
66 TTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAATAATATTAGTAGGATTGATTTATT
9343832 TAT-T-A-TAGTT-G
131 TATATAATTA-TTAG
* *
9343843 TATGGATTGATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATGGATTGAT
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATAGATTGAT
9343908 TTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAATAATTTATTAGTACGGATTGATT
66 TTATTTTAAATAATTTATTAGTATGGATTGATTTATTTT-AATAA--TATTAGTA-GGATTGATT
9343973 TATTTTATATAATTTATTAG
127 TA-TTTATATAA-TTATTAG
* *
9343993 TATGGATTGATTTATTTTATATAATTTATTAGTATGGAATGATTTATTTTAAA
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAA
9344046 TAATTTATTT
Statistics
Matches: 180, Mismatches: 6, Indels: 18
0.88 0.03 0.09
Matches are distributed among these distances:
134 101 0.56
136 1 0.01
137 2 0.01
140 1 0.01
141 2 0.01
142 1 0.01
144 11 0.06
146 4 0.02
147 1 0.01
148 1 0.01
149 2 0.01
150 53 0.29
ACGTcount: A:0.34, C:0.00, G:0.12, T:0.53
Consensus pattern (144 bp):
TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATAGATTGAT
TTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAATAATATTAGTAGGATTGATTTATT
TATATAATTATTAG
Found at i:9343858 original size:188 final size:178
Alignment explanation
Indices: 9343776--9344190 Score: 283
Period size: 177 Copynumber: 2.4 Consensus size: 178
9343766 AGATTTATTT
9343776 ATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAA-AATA-T-G---GATTGATTTATTAT
1 ATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAATAATATTAGTACGATTGATTTATT-T
* * * *
9343835 T--AT-A---GTT-GTATGGATTGATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTT
65 TAAATAATTTATTAGTATGGATTGATTTATTTTATATAATTTATTAGTATGGAATGATTTATTTT
** ** * ** * * *
9343893 AAA-ATATGGATT-G-ATTTATTTTAAATAATTTATTAGTATGGATTGATTT
130 AAATA-ATTTATTAGTATGGA-TTGATTTATTTTA-AAATATGGATTGATTT
* *
9343942 ATTTTAAATAATTTATTAGTACGGATTGATTTATTTTATATAATTTATTAGTATGGATTGATTTA
1 ATTTTAAATAATTTATTAGTATGGATTGATTTATTTTA-ATAA--TATTAGTA-CGATTGATTTA
* * * * *
9344007 TTTTATATAATTTATTAGTATGGAATGATTTATTTTAAATAATTTATTTGTATGGATTGATTTAT
62 TTTTAAATAATTTATTAGTATGGATTGATTTATTTTATATAATTTATTAGTATGGAATGATTTAT
* * * * * ***
9344072 TTTTAA-AA--TA-T-GGATTGATTTA-TTATTGTAGTTGTATGGATTGATTT
127 TTTAAATAATTTATTAGTATGGATTGATTTATTTTA-AAATATGGATTGATTT
*
9344119 ATTTTAAATAATTTATTAGTATGAATTGATTTATTTT-A-AA-A-TA-TA-GATTGATTTATTTT
1 ATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAATAATATTAGTACGATTGATTTATTTT
9344178 AAATAATTTATTA
66 AAATAATTTATTA
9344191 TTGTAGTTGT
Statistics
Matches: 215, Mismatches: 16, Indels: 35
0.81 0.06 0.13
Matches are distributed among these distances:
166 37 0.17
167 27 0.13
168 2 0.01
169 2 0.01
170 4 0.02
171 2 0.01
172 1 0.00
174 2 0.01
175 3 0.01
176 12 0.06
177 57 0.27
178 7 0.03
179 5 0.02
181 3 0.01
182 51 0.24
ACGTcount: A:0.34, C:0.00, G:0.13, T:0.53
Consensus pattern (178 bp):
ATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAATAATATTAGTACGATTGATTTATTTT
AAATAATTTATTAGTATGGATTGATTTATTTTATATAATTTATTAGTATGGAATGATTTATTTTA
AATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTT
Found at i:9343989 original size:14 final size:14
Alignment explanation
Indices: 9343970--9344055 Score: 55
Period size: 14 Copynumber: 5.6 Consensus size: 14
9343960 GTACGGATTG
9343970 ATTTATTTTATATA
1 ATTTATTTTATATA
* *
9343984 ATTTATTAGTATGGATTG
1 ATTTATT-TTAT--A-TA
9344002 ATTTATTTTATATA
1 ATTTATTTTATATA
* *
9344016 ATTTATTAGTATGGAATG
1 ATTTATT-TTAT---ATA
*
9344034 ATTTATTTTAAATA
1 ATTTATTTTATATA
9344048 ATTTATTT
1 ATTTATTT
9344056 GTATGGATTG
Statistics
Matches: 55, Mismatches: 9, Indels: 16
0.69 0.11 0.20
Matches are distributed among these distances:
14 25 0.45
15 7 0.13
17 6 0.11
18 17 0.31
ACGTcount: A:0.34, C:0.00, G:0.09, T:0.57
Consensus pattern (14 bp):
ATTTATTTTATATA
Found at i:9344017 original size:96 final size:89
Alignment explanation
Indices: 9343993--9344190 Score: 249
Period size: 81 Copynumber: 2.3 Consensus size: 89
9343983 AATTTATTAG
* *
9343993 TATGGATTGATTTATTTTATATAATTTATTAGTATGGAATGATTTATTTTAAATAATTTATTTGT
1 TATGGATTGATTTATTTTATATAATTTATTAGTATGGATTGATTTATTTTAAATAATTTATTAGT
9344058 ATGGATTGATTTA-TTT-TTAAAA
66 ATGGATTGATTTATTTTATTAAAA
*
9344080 TATGGATTGATTTA---T-TAT--TGTAGTT-GTATGGATTGATTTATTTTAAATAATTTATTAG
1 TATGGATTGATTTATTTTATATAATTTA-TTAGTATGGATTGATTTATTTTAAATAATTTATTAG
*
9344138 TATGAATTGATTTA--TT-TTAAAA
65 TATGGATTGATTTATTTTATTAAAA
* *
9344160 TATAGATTGATTTATTTTAAATAATTTATTA
1 TATGGATTGATTTATTTTATATAATTTATTA
9344191 TTGTAGTTGT
Statistics
Matches: 96, Mismatches: 7, Indels: 17
0.80 0.06 0.14
Matches are distributed among these distances:
80 21 0.22
81 47 0.49
82 2 0.02
83 4 0.04
84 3 0.03
85 2 0.02
86 3 0.03
87 14 0.15
ACGTcount: A:0.34, C:0.00, G:0.13, T:0.54
Consensus pattern (89 bp):
TATGGATTGATTTATTTTATATAATTTATTAGTATGGATTGATTTATTTTAAATAATTTATTAGT
ATGGATTGATTTATTTTATTAAAA
Found at i:9344039 original size:18 final size:18
Alignment explanation
Indices: 9343920--9344040 Score: 68
Period size: 18 Copynumber: 7.4 Consensus size: 18
9343910 ATTTTAAATA
*
9343920 ATTTATTAGTATGGATTG
1 ATTTATTAGTATGGAATG
* *
9343938 ATTTATT--T-T-AAATA
1 ATTTATTAGTATGGAATG
* *
9343952 ATTTATTAGTACGGATTG
1 ATTTATTAGTATGGAATG
* *
9343970 ATTTATT-TTAT---ATA
1 ATTTATTAGTATGGAATG
*
9343984 ATTTATTAGTATGGATTG
1 ATTTATTAGTATGGAATG
* *
9344002 ATTTATT-TTAT---ATA
1 ATTTATTAGTATGGAATG
9344016 ATTTATTAGTATGGAATG
1 ATTTATTAGTATGGAATG
9344034 ATTTATT
1 ATTTATT
9344041 TTAAATAATT
Statistics
Matches: 72, Mismatches: 19, Indels: 24
0.63 0.17 0.21
Matches are distributed among these distances:
14 25 0.35
15 7 0.10
16 2 0.03
17 5 0.07
18 33 0.46
ACGTcount: A:0.32, C:0.01, G:0.13, T:0.54
Consensus pattern (18 bp):
ATTTATTAGTATGGAATG
Found at i:9344109 original size:26 final size:23
Alignment explanation
Indices: 9344049--9344123 Score: 87
Period size: 23 Copynumber: 3.1 Consensus size: 23
9344039 TTTTAAATAA
9344049 TTTATTTGTATGGATTGATTTATT
1 TTTA-TTGTATGGATTGATTTATT
***
9344073 TTTAAAATATGGATTGATTTATT
1 TTTATTGTATGGATTGATTTATT
9344096 ATTGTAGTTGTATGGATTGATTTATT
1 -TT-TA-TTGTATGGATTGATTTATT
9344122 TT
1 TT
9344124 AAATAATTTA
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
23 16 0.38
24 6 0.14
25 4 0.10
26 16 0.38
ACGTcount: A:0.25, C:0.00, G:0.17, T:0.57
Consensus pattern (23 bp):
TTTATTGTATGGATTGATTTATT
Found at i:9344240 original size:31 final size:31
Alignment explanation
Indices: 9344205--9344263 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
9344195 AGTTGTATGG
* *
9344205 ATTATTTAAATTTCAGTATTGTAAAACTAAA
1 ATTATTTAAATCTCAGTATTGCAAAACTAAA
9344236 ATTATTTAAATCTCAGTATTGCAAAACT
1 ATTATTTAAATCTCAGTATTGCAAAACT
9344264 CTTTTAAGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.42, C:0.10, G:0.07, T:0.41
Consensus pattern (31 bp):
ATTATTTAAATCTCAGTATTGCAAAACTAAA
Found at i:9348180 original size:32 final size:31
Alignment explanation
Indices: 9348105--9348177 Score: 94
Period size: 32 Copynumber: 2.3 Consensus size: 31
9348095 TGGAAAAAAA
9348105 ATTGATTTTACATTCTTTTTGTATTGAATTTT
1 ATTGATTTTA-ATTCTTTTTGTATTGAATTTT
* *
9348137 ATTCACTTTTAATTCTTTTT-TATTGTATTTTT
1 ATTGA-TTTTAATTCTTTTTGTATTG-AATTTT
9348169 ATTGATTTT
1 ATTGATTTT
9348178 TAAAAAAGTG
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
31 9 0.25
32 22 0.61
33 5 0.14
ACGTcount: A:0.21, C:0.07, G:0.07, T:0.66
Consensus pattern (31 bp):
ATTGATTTTAATTCTTTTTGTATTGAATTTT
Found at i:9350145 original size:28 final size:29
Alignment explanation
Indices: 9350057--9350227 Score: 238
Period size: 29 Copynumber: 5.9 Consensus size: 29
9350047 AAAATAAGGG
*
9350057 CCAAAACTTTTTATAAATTACAATAAAGA
1 CCAAAACTTTTTATAAATTACAATAAATA
* * *
9350086 TCAAAACTATCTATAAATTACAATAAATA
1 CCAAAACTTTTTATAAATTACAATAAATA
* *
9350115 CCAAAACTTTCTGA-AAA-TATAATAAATA
1 CCAAAACTTT-TTATAAATTACAATAAATA
*
9350143 CCAAAACTTTTTATAAATTACAATAAACA
1 CCAAAACTTTTTATAAATTACAATAAATA
9350172 CCAAAACTTTTTATAAATTACAATAAATA
1 CCAAAACTTTTTATAAATTACAATAAATA
* *
9350201 TCAAAACTATTTATAAATTACAATAAA
1 CCAAAACTTTTTATAAATTACAATAAA
9350228 AAATGCTTCC
Statistics
Matches: 124, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
27 2 0.02
28 23 0.19
29 98 0.79
30 1 0.01
ACGTcount: A:0.53, C:0.14, G:0.01, T:0.32
Consensus pattern (29 bp):
CCAAAACTTTTTATAAATTACAATAAATA
Found at i:9353881 original size:19 final size:20
Alignment explanation
Indices: 9353859--9353909 Score: 54
Period size: 21 Copynumber: 2.6 Consensus size: 20
9353849 AAAAAGAAAC
*
9353859 GAGAGTTGAAAAAGA-CATT
1 GAGAGTTGAAAAAGAGAATT
9353878 GAGAGCATT-AAAAAGAGAATT
1 GAGAG--TTGAAAAAGAGAATT
9353899 GAGAG-TGAAAA
1 GAGAGTTGAAAA
9353910 TGAGCACATT
Statistics
Matches: 27, Mismatches: 1, Indels: 8
0.75 0.03 0.22
Matches are distributed among these distances:
18 1 0.04
19 9 0.33
20 7 0.26
21 10 0.37
ACGTcount: A:0.51, C:0.04, G:0.27, T:0.18
Consensus pattern (20 bp):
GAGAGTTGAAAAAGAGAATT
Found at i:9357068 original size:22 final size:20
Alignment explanation
Indices: 9357030--9357077 Score: 53
Period size: 22 Copynumber: 2.3 Consensus size: 20
9357020 CATTTTAGTA
*
9357030 TTTATTTTTCTCTTAAAT-T
1 TTTATTTTTCTCATAAATAT
9357049 GTTTATTCTTCTCTCATAAATAT
1 -TTTATT-TT-TCTCATAAATAT
9357072 TTTATT
1 TTTATT
9357078 ACTTTCGTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
20 6 0.25
21 2 0.08
22 15 0.62
23 1 0.04
ACGTcount: A:0.23, C:0.12, G:0.02, T:0.62
Consensus pattern (20 bp):
TTTATTTTTCTCATAAATAT
Found at i:9361569 original size:25 final size:25
Alignment explanation
Indices: 9361523--9361574 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
9361513 TTAATTTAAA
* *
9361523 TTTAAATTAAATTATTTTTAAATTT
1 TTTAAATTAAATTATTTATAAAATT
*
9361548 TTTAGATTAAA-TATTTAATAAAATT
1 TTTAAATTAAATTATTT-ATAAAATT
9361573 TT
1 TT
9361575 ATTTTGATTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 5 0.22
25 18 0.78
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (25 bp):
TTTAAATTAAATTATTTATAAAATT
Found at i:9362131 original size:60 final size:60
Alignment explanation
Indices: 9362002--9362136 Score: 163
Period size: 58 Copynumber: 2.3 Consensus size: 60
9361992 TTGCATCTTA
* * *
9362002 TATCCTCAAACTAT-A-ATCTTTATTCTAAATTGGTCCTTAAATTTTAATATTCTAATTT
1 TATCCTCAAACTATGACATCTTTATTCTAAATTAGTCCTTAAATTTTAACATTCCAATTT
* *
9362060 CATCCTAAAACTATGACA-C-TTAGTT-TAAATTAGTCCTTAAACTTTTGAACATTCCAATTT
1 TATCCTCAAACTATGACATCTTTA-TTCTAAATTAGTCCTTAAA-TTTT-AACATTCCAATTT
9362120 TATCCTCAAACTATGAC
1 TATCCTCAAACTATGAC
9362137 TCTCATTCTG
Statistics
Matches: 65, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
58 30 0.46
59 8 0.12
60 27 0.42
ACGTcount: A:0.34, C:0.19, G:0.05, T:0.41
Consensus pattern (60 bp):
TATCCTCAAACTATGACATCTTTATTCTAAATTAGTCCTTAAATTTTAACATTCCAATTT
Found at i:9362161 original size:60 final size:59
Alignment explanation
Indices: 9362002--9362167 Score: 178
Period size: 60 Copynumber: 2.8 Consensus size: 59
9361992 TTGCATCTTA
* * * *
9362002 TATCCTCAAACTAT-AATCTTTATTCTAAATTGGTCCTTAAA-TTTTAATATTCTAATTT
1 TATCCTCAAACTATGACTC-TTATTCTAAATTGATCCTTAAACTTTTAACATTCCAATTT
* * *
9362060 CATCCTAAAACTATGACACTTAGTT-TAAATT-AGTCCTTAAACTTTTGAACATTCCAATTT
1 TATCCTCAAACTATGACTCTTA-TTCTAAATTGA-TCCTTAAACTTTT-AACATTCCAATTT
* * *
9362120 TATCCTCAAACTATGACTCTCATTCTGAATTGATCCCTAAACTTTTAA
1 TATCCTCAAACTATGACTCTTATTCTAAATTGATCCTTAAACTTTTAA
9362168 ATCTTCCAAT
Statistics
Matches: 88, Mismatches: 13, Indels: 13
0.77 0.11 0.11
Matches are distributed among these distances:
58 29 0.33
59 12 0.14
60 46 0.52
61 1 0.01
ACGTcount: A:0.33, C:0.20, G:0.05, T:0.42
Consensus pattern (59 bp):
TATCCTCAAACTATGACTCTTATTCTAAATTGATCCTTAAACTTTTAACATTCCAATTT
Found at i:9371363 original size:32 final size:32
Alignment explanation
Indices: 9371322--9371429 Score: 101
Period size: 30 Copynumber: 3.6 Consensus size: 32
9371312 GAAACCCGAT
9371322 TATATATATATATATATATATATATATATTTA
1 TATATATATATATATATATATATATATATTTA
*
9371354 TATATATATATATA-AT-TTTATATAT-TTTA
1 TATATATATATATATATATATATATATATTTA
* *
9371383 TAT-TA-AT-TATATATAACATTTTATATATTT-
1 TATATATATATATATAT-ATA-TATATATATTTA
9371413 TATAT-TA-AT-TATATATA
1 TATATATATATATATATATA
9371430 AAATATTTTC
Statistics
Matches: 63, Mismatches: 5, Indels: 19
0.72 0.06 0.22
Matches are distributed among these distances:
26 4 0.06
27 4 0.06
28 2 0.03
29 9 0.14
30 22 0.35
31 8 0.13
32 14 0.22
ACGTcount: A:0.44, C:0.01, G:0.00, T:0.56
Consensus pattern (32 bp):
TATATATATATATATATATATATATATATTTA
Found at i:9371373 original size:20 final size:20
Alignment explanation
Indices: 9371330--9371397 Score: 84
Period size: 20 Copynumber: 3.3 Consensus size: 20
9371320 ATTATATATA
9371330 TATATATATATATATATATATT
1 TATATATATATATATA-AT-TT
9371352 TATATATATATATATAATTT
1 TATATATATATATATAATTT
* *
9371372 TATATAT-TTTATATTAATTA
1 TATATATATATATA-TAATTT
9371392 TATATA
1 TATATA
9371398 ACATTTTATA
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
19 5 0.12
20 20 0.47
21 2 0.05
22 16 0.37
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (20 bp):
TATATATATATATATAATTT
Found at i:9371375 original size:14 final size:15
Alignment explanation
Indices: 9371321--9371429 Score: 76
Period size: 16 Copynumber: 6.6 Consensus size: 15
9371311 CGAAACCCGA
9371321 TTATATATATATATAT
1 TTATATATATATAT-T
*
9371337 ATATATATATATATTT
1 TTATATATATATA-TT
9371353 ATATATATATATATAATT
1 -T-TATATATATAT-ATT
*
9371371 TTATATATTTTATATT
1 TTATATA-TATATATT
*
9371387 AATTATATATA-ACATT
1 --TTATATATATATATT
*
9371403 TTATATATTTTATATT
1 TTATATA-TATATATT
9371419 AATTATATATA
1 --TTATATATA
9371430 AAATATTTTC
Statistics
Matches: 74, Mismatches: 8, Indels: 21
0.72 0.08 0.20
Matches are distributed among these distances:
14 7 0.09
15 1 0.01
16 30 0.41
17 8 0.11
18 27 0.36
19 1 0.01
ACGTcount: A:0.43, C:0.01, G:0.00, T:0.56
Consensus pattern (15 bp):
TTATATATATATATT
Found at i:9371375 original size:18 final size:17
Alignment explanation
Indices: 9371322--9371438 Score: 93
Period size: 18 Copynumber: 6.9 Consensus size: 17
9371312 GAAACCCGAT
*
9371322 TATATATATATA-TATA
1 TATATATATATATTTTA
9371338 TATATATATATATTTATA
1 TATATATATATATTT-TA
9371356 TATATATATATAATTTTA
1 TATATATATAT-ATTTTA
* *
9371374 TATAT-TTTATA-TTAA
1 TATATATATATATTTTA
*
9371389 T-TATATATAACATTTTA
1 TATATATAT-ATATTTTA
*
9371406 TATAT-TTTATATTAATTA
1 TATATATATATATT--TTA
*
9371424 TATATA-AAATATTTT
1 TATATATATATATTTT
9371439 CGAGTTCGAG
Statistics
Matches: 81, Mismatches: 10, Indels: 20
0.73 0.09 0.18
Matches are distributed among these distances:
14 3 0.04
15 6 0.07
16 21 0.26
17 11 0.14
18 36 0.44
19 4 0.05
ACGTcount: A:0.44, C:0.01, G:0.00, T:0.56
Consensus pattern (17 bp):
TATATATATATATTTTA
Found at i:9371378 original size:2 final size:2
Alignment explanation
Indices: 9371322--9371367 Score: 83
Period size: 2 Copynumber: 23.0 Consensus size: 2
9371312 GAAACCCGAT
*
9371322 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
9371364 TA TA
1 TA TA
9371368 ATTTTATATA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:9371430 original size:32 final size:31
Alignment explanation
Indices: 9371328--9371431 Score: 133
Period size: 32 Copynumber: 3.3 Consensus size: 31
9371318 CGATTATATA
* *
9371328 TATATATATATATATATATATATTTATA-T-A-
1 TATATATAAAT-TTTATATAT-TTTATATTAAT
9371358 TATATATATAATTTTATATATTTTATATTAAT
1 TATATATA-AATTTTATATATTTTATATTAAT
9371390 TATATATAACATTTTATATATTTTATATTAAT
1 TATATATAA-ATTTTATATATTTTATATTAAT
9371422 TATATATAAA
1 TATATATAAA
9371432 ATATTTTCGA
Statistics
Matches: 67, Mismatches: 2, Indels: 9
0.86 0.03 0.12
Matches are distributed among these distances:
29 6 0.09
30 17 0.25
31 5 0.07
32 39 0.58
ACGTcount: A:0.44, C:0.01, G:0.00, T:0.55
Consensus pattern (31 bp):
TATATATAAATTTTATATATTTTATATTAAT
Found at i:9375331 original size:34 final size:34
Alignment explanation
Indices: 9375284--9375351 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 34
9375274 ACATTCCAAT
* *
9375284 GTTCAAGAGTATAAGTGGTTCTGATATCATTTTA
1 GTTCAAGAATATAAGTGGTTATGATATCATTTTA
* *
9375318 GTTCAAGAATATAAGTGGTTATGGTATCTTTTTA
1 GTTCAAGAATATAAGTGGTTATGATATCATTTTA
9375352 ACTTTTGCAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.29, C:0.07, G:0.21, T:0.43
Consensus pattern (34 bp):
GTTCAAGAATATAAGTGGTTATGATATCATTTTA
Found at i:9387064 original size:13 final size:13
Alignment explanation
Indices: 9387046--9387070 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9387036 CACTGCAGGC
9387046 TCTTGTGATTAGG
1 TCTTGTGATTAGG
9387059 TCTTGTGATTAG
1 TCTTGTGATTAG
9387071 TTATACTATC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.08, G:0.28, T:0.48
Consensus pattern (13 bp):
TCTTGTGATTAGG
Found at i:9389487 original size:22 final size:23
Alignment explanation
Indices: 9389446--9389488 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
9389436 ATTAAGAAAA
9389446 AGTGATGGATCGCATGCGAATAG
1 AGTGATGGATCGCATGCGAATAG
*
9389469 AGTGATGGAT-GTATGCGAAT
1 AGTGATGGATCGCATGCGAAT
9389489 GGAGCAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.30, C:0.09, G:0.35, T:0.26
Consensus pattern (23 bp):
AGTGATGGATCGCATGCGAATAG
Found at i:9400095 original size:26 final size:26
Alignment explanation
Indices: 9400059--9400110 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
9400049 TAGAAGATAA
*
9400059 TCGATAATGATTAGATAGGGGCATAT
1 TCGATAATGATTAGATAGGGACATAT
9400085 TCGATAATGATTAGATAGGGACATAT
1 TCGATAATGATTAGATAGGGACATAT
9400111 CTGGTTGACA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.37, C:0.08, G:0.25, T:0.31
Consensus pattern (26 bp):
TCGATAATGATTAGATAGGGACATAT
Found at i:9405511 original size:29 final size:29
Alignment explanation
Indices: 9405469--9405554 Score: 145
Period size: 29 Copynumber: 3.0 Consensus size: 29
9405459 TTACAGTGAG
*
9405469 CTTGGAGGTCGCCATGACATCCGAGCGAC
1 CTTGGAGGTCGCCATGGCATCCGAGCGAC
9405498 CTTGGAGGTCGCCATGGCATCCGAGCGAC
1 CTTGGAGGTCGCCATGGCATCCGAGCGAC
* *
9405527 CTTGTAGGTCACCATGGCATCCGAGCGA
1 CTTGGAGGTCGCCATGGCATCCGAGCGA
9405555 TCTGTGGGGT
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 54 1.00
ACGTcount: A:0.20, C:0.30, G:0.31, T:0.19
Consensus pattern (29 bp):
CTTGGAGGTCGCCATGGCATCCGAGCGAC
Found at i:9405837 original size:16 final size:16
Alignment explanation
Indices: 9405816--9405847 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
9405806 AAACGTTGTT
9405816 GTAGGTCGCCATGCAC
1 GTAGGTCGCCATGCAC
*
9405832 GTAGGTCGTCATGCAC
1 GTAGGTCGCCATGCAC
9405848 TCCGGGCGAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (16 bp):
GTAGGTCGCCATGCAC
Found at i:9405878 original size:29 final size:29
Alignment explanation
Indices: 9405832--9405888 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
9405822 CGCCATGCAC
*
9405832 GTAGGTCGTCATGCACTCCGGGCGACCTT
1 GTAGGTCGCCATGCACTCCGGGCGACCTT
* *
9405861 GTAGGTCGCCATGTACTCCGGGTGACCT
1 GTAGGTCGCCATGCACTCCGGGCGACCT
9405889 ACCCTCGCAC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.14, C:0.30, G:0.32, T:0.25
Consensus pattern (29 bp):
GTAGGTCGCCATGCACTCCGGGCGACCTT
Found at i:9406445 original size:75 final size:76
Alignment explanation
Indices: 9406315--9406469 Score: 303
Period size: 75 Copynumber: 2.1 Consensus size: 76
9406305 GTCAACTGAC
9406315 ATCCAACCCTTTTACCGGAATTCAAAGAAACCATTATACGACTGGCTTATCAATGGTGATACGGG
1 ATCCAACCCTTTTACCGGAATTCAAAGAAACCATTATACGACTGGCTTATCAATGGTGATACGGG
9406380 TTGATGCTGGA
66 TTGATGCTGGA
9406391 ATCCAA-CCTTTTACCGGAATTCAAAGAAACCATTATACGACTGGCTTATCAATGGTGATACGGG
1 ATCCAACCCTTTTACCGGAATTCAAAGAAACCATTATACGACTGGCTTATCAATGGTGATACGGG
9406455 TTGATGCTGGA
66 TTGATGCTGGA
9406466 ATCC
1 ATCC
9406470 TAATAAAAAC
Statistics
Matches: 79, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
75 73 0.92
76 6 0.08
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (76 bp):
ATCCAACCCTTTTACCGGAATTCAAAGAAACCATTATACGACTGGCTTATCAATGGTGATACGGG
TTGATGCTGGA
Found at i:9407705 original size:21 final size:21
Alignment explanation
Indices: 9407679--9407720 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
9407669 CTACCCTTGC
9407679 TCAAACAGAGAGAATGAACGT
1 TCAAACAGAGAGAATGAACGT
9407700 TCAAACAGAGAGAATGAACGT
1 TCAAACAGAGAGAATGAACGT
9407721 GTTGCATGGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.48, C:0.14, G:0.24, T:0.14
Consensus pattern (21 bp):
TCAAACAGAGAGAATGAACGT
Found at i:9407783 original size:29 final size:29
Alignment explanation
Indices: 9407750--9407805 Score: 103
Period size: 29 Copynumber: 1.9 Consensus size: 29
9407740 CCCCAACACA
*
9407750 TAGGTCGCCATGCCCTCCGGGCGACCTTG
1 TAGGTCGCCATGCACTCCGGGCGACCTTG
9407779 TAGGTCGCCATGCACTCCGGGCGACCT
1 TAGGTCGCCATGCACTCCGGGCGACCT
9407806 ACCCTCGCTC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.12, C:0.38, G:0.30, T:0.20
Consensus pattern (29 bp):
TAGGTCGCCATGCACTCCGGGCGACCTTG
Found at i:9407850 original size:33 final size:33
Alignment explanation
Indices: 9407809--9407902 Score: 127
Period size: 33 Copynumber: 2.8 Consensus size: 33
9407799 GCGACCTACC
*
9407809 CTCGCTCGGCTT-CCCTCGGATTCCCTCGCATAG
1 CTCGCTCGG-TTGCCCTCGGATGCCCTCGCATAG
9407842 CTCGCTCGGTTGCCCTCGGATGCCCTCGCATAG
1 CTCGCTCGGTTGCCCTCGGATGCCCTCGCATAG
* * * *
9407875 CTCGTTCGGATGGCCTCGGATGCTCTCG
1 CTCGCTCGGTTGCCCTCGGATGCCCTCG
9407903 GATGGCCTCG
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
32 2 0.04
33 53 0.96
ACGTcount: A:0.09, C:0.38, G:0.27, T:0.27
Consensus pattern (33 bp):
CTCGCTCGGTTGCCCTCGGATGCCCTCGCATAG
Found at i:9407865 original size:10 final size:10
Alignment explanation
Indices: 9407821--9407953 Score: 86
Period size: 10 Copynumber: 12.3 Consensus size: 10
9407811 CGCTCGGCTT
*
9407821 CCCTCGGATT
1 CCCTCGGATG
*
9407831 CCCTCGCATAG
1 CCCTCGGAT-G
*
9407842 CTCGCTCGGTTG
1 C-C-CTCGGATG
9407854 CCCTCGGATG
1 CCCTCGGATG
*
9407864 CCCTCGCATAG
1 CCCTCGGAT-G
*
9407875 CTCGTTCGGATG
1 C-C-CTCGGATG
*
9407887 GCCTCGGATG
1 CCCTCGGATG
*
9407897 CTCTCGGATG
1 CCCTCGGATG
*
9407907 GCCTCGGATG
1 CCCTCGGATG
*
9407917 CTCTCGGATGG
1 CCCTCGGAT-G
9407928 CCTCGGTCGGATG
1 CC-C--TCGGATG
*
9407941 GCCTCGGATG
1 CCCTCGGATG
9407951 CCC
1 CCC
9407954 AGCGTGTTGG
Statistics
Matches: 94, Mismatches: 19, Indels: 20
0.71 0.14 0.15
Matches are distributed among these distances:
10 62 0.66
11 7 0.07
12 7 0.07
13 12 0.13
14 6 0.06
ACGTcount: A:0.10, C:0.35, G:0.31, T:0.24
Consensus pattern (10 bp):
CCCTCGGATG
Found at i:9407905 original size:20 final size:20
Alignment explanation
Indices: 9407846--9407933 Score: 113
Period size: 20 Copynumber: 4.2 Consensus size: 20
9407836 GCATAGCTCG
* * *
9407846 CTCGGTTGCCCTCGGATGCC
1 CTCGGATGCTCTCGGATGGC
*
9407866 CTCGCATAGCTCGTTCGGATGGC
1 CTCGGAT-GCTC--TCGGATGGC
9407889 CTCGGATGCTCTCGGATGGC
1 CTCGGATGCTCTCGGATGGC
9407909 CTCGGATGCTCTCGGATGGC
1 CTCGGATGCTCTCGGATGGC
9407929 CTCGG
1 CTCGG
9407934 TCGGATGGCC
Statistics
Matches: 60, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
20 39 0.65
21 3 0.05
22 4 0.07
23 14 0.23
ACGTcount: A:0.09, C:0.33, G:0.33, T:0.25
Consensus pattern (20 bp):
CTCGGATGCTCTCGGATGGC
Found at i:9407939 original size:14 final size:14
Alignment explanation
Indices: 9407920--9407947 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
9407910 TCGGATGCTC
9407920 TCGGATGGCCTCGG
1 TCGGATGGCCTCGG
9407934 TCGGATGGCCTCGG
1 TCGGATGGCCTCGG
9407948 ATGCCCAGCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.07, C:0.29, G:0.43, T:0.21
Consensus pattern (14 bp):
TCGGATGGCCTCGG
Found at i:9407948 original size:54 final size:53
Alignment explanation
Indices: 9407846--9407951 Score: 149
Period size: 53 Copynumber: 2.0 Consensus size: 53
9407836 GCATAGCTCG
* *
9407846 CTCGGTTGCCCTCGGATGCCCTCGCATAGCTCGTTCGGATGGCCTCGGATGCT
1 CTCGGATGCCCTCGGATGCCCTCGCATAGCTCGGTCGGATGGCCTCGGATGCT
* * * *
9407899 CTCGGATGGCCTCGGATGCTCTCGGATGGCCTCGGTCGGATGGCCTCGGATGC
1 CTCGGATGCCCTCGGATGCCCTCGCATAG-CTCGGTCGGATGGCCTCGGATGC
9407952 CCAGCGTGTT
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
53 24 0.52
54 22 0.48
ACGTcount: A:0.09, C:0.32, G:0.34, T:0.25
Consensus pattern (53 bp):
CTCGGATGCCCTCGGATGCCCTCGCATAGCTCGGTCGGATGGCCTCGGATGCT
Found at i:9408291 original size:30 final size:30
Alignment explanation
Indices: 9408257--9408330 Score: 103
Period size: 30 Copynumber: 2.5 Consensus size: 30
9408247 GAAAACCGAA
* * * *
9408257 CTAAACGGGGATGGTGAAAAATCGTTTATG
1 CTAAACGGGGACGGAGAAAAACCATTTATG
9408287 CTAAACGGGGACGGAGAAAAACCATTTATG
1 CTAAACGGGGACGGAGAAAAACCATTTATG
*
9408317 TTAAACGGGGACGG
1 CTAAACGGGGACGG
9408331 GTTTAGTAAT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.35, C:0.14, G:0.31, T:0.20
Consensus pattern (30 bp):
CTAAACGGGGACGGAGAAAAACCATTTATG
Found at i:9408403 original size:4 final size:4
Alignment explanation
Indices: 9408394--9408488 Score: 51
Period size: 4 Copynumber: 25.2 Consensus size: 4
9408384 TAAAAATAAT
* * * *
9408394 TATA TATA TATA TATA TACTA T-TA -ATA AATT TA-A TTTA AAT- TA-A
1 TATA TATA TATA TATA TA-TA TATA TATA TATA TATA TATA TATA TATA
* * * * *
9408438 AATA TATA TATA TATA TATA -ATA TTTA TATA TTTA -ATT TAAA TATA
1 TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA
9408484 TATA T
1 TATA T
9408489 TCGGCCTGAT
Statistics
Matches: 66, Mismatches: 17, Indels: 16
0.67 0.17 0.16
Matches are distributed among these distances:
3 11 0.17
4 52 0.79
5 3 0.05
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (4 bp):
TATA
Found at i:9408405 original size:6 final size:6
Alignment explanation
Indices: 9408394--9408488 Score: 51
Period size: 6 Copynumber: 16.8 Consensus size: 6
9408384 TAAAAATAAT
* * * *
9408394 TATATA TATATA TATATA CTAT-TA -ATAAA TTTA-A TTTAAA T-TA-A
1 TATATA TATATA TATATA -TATATA TATATA TATATA TATATA TATATA
* * * * *
9408438 AATATA TATATA TATATA TA-ATA TTTATA TATTTA -ATTTA AATATA
1 TATATA TATATA TATATA TATATA TATATA TATATA TATATA TATATA
9408484 TATAT
1 TATAT
9408489 TCGGCCTGAT
Statistics
Matches: 72, Mismatches: 9, Indels: 16
0.74 0.09 0.16
Matches are distributed among these distances:
4 3 0.04
5 19 0.26
6 47 0.65
7 3 0.04
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (6 bp):
TATATA
Found at i:9408460 original size:40 final size:42
Alignment explanation
Indices: 9408397--9408488 Score: 120
Period size: 40 Copynumber: 2.2 Consensus size: 42
9408387 AAATAATTAT
9408397 ATATATATATATATACTATTAATAAATTTA-AT-TTAAATTAAA
1 ATATATATATATATACTATTAAT--ATTTATATATTAAATTAAA
* *
9408439 ATATATATATATATA-TA-TAATATTTATATATTTAATTTAA
1 ATATATATATATATACTATTAATATTTATATATTAAATTAAA
9408479 ATATATATAT
1 ATATATATAT
9408489 TCGGCCTGAT
Statistics
Matches: 46, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
38 5 0.11
39 2 0.04
40 22 0.48
41 2 0.04
42 15 0.33
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (42 bp):
ATATATATATATATACTATTAATATTTATATATTAAATTAAA
Found at i:9408974 original size:23 final size:23
Alignment explanation
Indices: 9408938--9408990 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
9408928 TATCTTTATA
9408938 ACATGTTTTCATCTAAT-TTTTGGC
1 ACAT-TTTTCATCT-ATCTTTTGGC
* *
9408962 ATATTTTTTATCTATCTTTTGGC
1 ACATTTTTCATCTATCTTTTGGC
9408985 ACATTT
1 ACATTT
9408991 ATGACTTTCT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
22 2 0.08
23 20 0.80
24 3 0.12
ACGTcount: A:0.21, C:0.15, G:0.09, T:0.55
Consensus pattern (23 bp):
ACATTTTTCATCTATCTTTTGGC
Found at i:9416009 original size:16 final size:17
Alignment explanation
Indices: 9415985--9416017 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
9415975 ATATATATAT
*
9415985 AAAGGTAAAA-AAAATA
1 AAAGATAAAATAAAATA
9416001 AAAGATAAAATAAAATA
1 AAAGATAAAATAAAATA
9416018 TAATATGATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.76, C:0.00, G:0.09, T:0.15
Consensus pattern (17 bp):
AAAGATAAAATAAAATA
Found at i:9418069 original size:36 final size:36
Alignment explanation
Indices: 9418008--9418519 Score: 346
Period size: 36 Copynumber: 14.7 Consensus size: 36
9417998 AAGGGAAACC
9418008 GTCTCAAGAGAGAC-AAATTTGTTTTAAGAGAAAAT
1 GTCTCAAGAGAGACAAAATTTGTTTTAAGAGAAAAT
* *
9418043 GTCTCAAGATAGACAAAATTTGTTTTAAGAGAAACT
1 GTCTCAAGAGAGACAAAATTTGTTTTAAGAGAAAAT
*
9418079 GTCTCAAGAGAGACAAAACTTTGTTTCAAG-GAAAA-
1 GTCTCAAGAGAGACAAAA-TTTGTTTTAAGAGAAAAT
** * * * **
9418114 ----C-A-A-ATTCAAAGTTTTTATTTCAAGGGAAACC
1 GTCTCAAGAGAGACAAAATTTGT-TTT-AAGAGAAAAT
* * * * *
9418145 GTGTCAAAATAGACAAAATTTGCTTTAAGTGAAAAT
1 GTCTCAAGAGAGACAAAATTTGTTTTAAGAGAAAAT
* *
9418181 GTCTTAAGAGAGACAAAATTTGTTTTAAGAGAAACT
1 GTCTCAAGAGAGACAAAATTTGTTTTAAGAGAAAAT
*
9418217 GTCTCAAGAGAGACAAAACTTTGTTTCAAG-GAAAA-
1 GTCTCAAGAGAGACAAAA-TTTGTTTTAAGAGAAAAT
** * * **
9418252 ----C-A-A-ATTCAAAATTTTTGTTTCAAGGGAAACC
1 GTCTCAAGAGAGACAAAA--TTTGTTTTAAGAGAAAAT
9418283 GTCTCAAGAGAGACAAAATTTGTTTTAAGAGAAAAT
1 GTCTCAAGAGAGACAAAATTTGTTTTAAGAGAAAAT
* *
9418319 GTCTTAAGAGATACAAAATTTGTTTTAAGAGAAACA-
1 GTCTCAAGAGAGACAAAATTTGTTTTAAGAGAAA-AT
* * *
9418355 GTCTCGAGAGAGACAACACTTTGCTTT--GAGTAAAA-
1 GTCTCAAGAGAGACAA-AATTTGTTTTAAGAG-AAAAT
** * * * **
9418390 ----C-A-A-ATTCAAAGTTTTTGTTTCAAGGGAAACC
1 GTCTCAAGAGAGACAAA--ATTTGTTTTAAGAGAAAAT
9418421 GTCTCAAGAGAGACAAAATTTGTTTTAAGAGAAAAT
1 GTCTCAAGAGAGACAAAATTTGTTTTAAGAGAAAAT
* * *
9418457 GTCTTAAGAGAGACAAAATTTATTTTAAGAGAAACT
1 GTCTCAAGAGAGACAAAATTTGTTTTAAGAGAAAAT
*
9418493 GTCTCGAGAGAGACAAAACTTTGTTTT
1 GTCTCAAGAGAGACAAAA-TTTGTTTT
9418520 GAGTAAATTA
Statistics
Matches: 371, Mismatches: 66, Indels: 78
0.72 0.13 0.15
Matches are distributed among these distances:
27 5 0.01
28 17 0.05
29 23 0.06
30 14 0.04
31 5 0.01
35 20 0.05
36 226 0.61
37 42 0.11
38 19 0.05
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (36 bp):
GTCTCAAGAGAGACAAAATTTGTTTTAAGAGAAAAT
Found at i:9418200 original size:138 final size:138
Alignment explanation
Indices: 9417890--9418518 Score: 944
Period size: 138 Copynumber: 4.6 Consensus size: 138
9417880 CTTCAAAGAT
* * * * * *
9417890 TTTGTTTCAAG-GGAAATCGTCTCAAGAGAGACAAAATTTGTTTTAAAAGAAACTGTCTGAAGGG
1 TTTGTTTTAAGAGAAAAT-GTCTTAAGAGAGACAAAATTTGTTTTAAGAGAAACTGTCTCAAGAG
* * * * *
9417954 GGACGAAA-TTTGTTTTAAGGAAAACATATTCAAAGATTTTATTT-AAGGGAAACCGTCTCAAGA
65 AGACAAAACTTTGTTTCAAGGAAAACAAATTCAAAGTTTTTATTTCAAGGGAAACCGTCTCAAGA
9418017 GAGAC-AAA
130 GAGACAAAA
* *
9418025 TTTGTTTTAAGAGAAAATGTCTCAAGATAGACAAAATTTGTTTTAAGAGAAACTGTCTCAAGAGA
1 TTTGTTTTAAGAGAAAATGTCTTAAGAGAGACAAAATTTGTTTTAAGAGAAACTGTCTCAAGAGA
* * *
9418090 GACAAAACTTTGTTTCAAGGAAAACAAATTCAAAGTTTTTATTTCAAGGGAAACCGTGTCAAAAT
66 GACAAAACTTTGTTTCAAGGAAAACAAATTCAAAGTTTTTATTTCAAGGGAAACCGTCTCAAGAG
9418155 AGACAAAA
131 AGACAAAA
* *
9418163 TTTGCTTTAAGTGAAAATGTCTTAAGAGAGACAAAATTTGTTTTAAGAGAAACTGTCTCAAGAGA
1 TTTGTTTTAAGAGAAAATGTCTTAAGAGAGACAAAATTTGTTTTAAGAGAAACTGTCTCAAGAGA
* *
9418228 GACAAAACTTTGTTTCAAGGAAAACAAATTCAAAATTTTTGTTTCAAGGGAAACCGTCTCAAGAG
66 GACAAAACTTTGTTTCAAGGAAAACAAATTCAAAGTTTTTATTTCAAGGGAAACCGTCTCAAGAG
9418293 AGACAAAA
131 AGACAAAA
* * *
9418301 TTTGTTTTAAGAGAAAATGTCTTAAGAGATACAAAATTTGTTTTAAGAGAAACAGTCTCGAGAGA
1 TTTGTTTTAAGAGAAAATGTCTTAAGAGAGACAAAATTTGTTTTAAGAGAAACTGTCTCAAGAGA
* * * *
9418366 GACAACACTTTGCTTT-GAGTAAAACAAATTCAAAGTTTTTGTTTCAAGGGAAACCGTCTCAAGA
66 GACAAAACTTTG-TTTCAAGGAAAACAAATTCAAAGTTTTTATTTCAAGGGAAACCGTCTCAAGA
9418430 GAGACAAAA
130 GAGACAAAA
* *
9418439 TTTGTTTTAAGAGAAAATGTCTTAAGAGAGACAAAATTTATTTTAAGAGAAACTGTCTCGAGAGA
1 TTTGTTTTAAGAGAAAATGTCTTAAGAGAGACAAAATTTGTTTTAAGAGAAACTGTCTCAAGAGA
9418504 GACAAAACTTTGTTT
66 GACAAAACTTTGTTT
9418519 TGAGTAAATT
Statistics
Matches: 453, Mismatches: 36, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
135 58 0.13
136 38 0.08
137 24 0.05
138 330 0.73
139 3 0.01
ACGTcount: A:0.41, C:0.11, G:0.19, T:0.29
Consensus pattern (138 bp):
TTTGTTTTAAGAGAAAATGTCTTAAGAGAGACAAAATTTGTTTTAAGAGAAACTGTCTCAAGAGA
GACAAAACTTTGTTTCAAGGAAAACAAATTCAAAGTTTTTATTTCAAGGGAAACCGTCTCAAGAG
AGACAAAA
Found at i:9418314 original size:21 final size:21
Alignment explanation
Indices: 9418288--9418350 Score: 66
Period size: 21 Copynumber: 3.3 Consensus size: 21
9418278 AAACCGTCTC
9418288 AAGAGAGACAAAATTTGTTTT
1 AAGAGAGACAAAATTTGTTTT
*
9418309 -A-AGAG--AAAA--TGTCTT
1 AAGAGAGACAAAATTTGTTTT
*
9418324 AAGAGATACAAAATTTGTTTT
1 AAGAGAGACAAAATTTGTTTT
9418345 AAGAGA
1 AAGAGA
9418351 AACAGTCTCG
Statistics
Matches: 33, Mismatches: 3, Indels: 12
0.69 0.06 0.25
Matches are distributed among these distances:
15 5 0.15
16 1 0.03
17 7 0.21
19 8 0.24
20 1 0.03
21 11 0.33
ACGTcount: A:0.46, C:0.05, G:0.19, T:0.30
Consensus pattern (21 bp):
AAGAGAGACAAAATTTGTTTT
Found at i:9418487 original size:19 final size:18
Alignment explanation
Indices: 9418429--9418488 Score: 52
Period size: 19 Copynumber: 3.3 Consensus size: 18
9418419 CCGTCTCAAG
9418429 AGAGACAAAATTTGTTTTA
1 AGAGACAAAATTT-TTTTA
* * *
9418448 AGAG--AAAATGTCTTAA
1 AGAGACAAAATTTTTTTA
9418464 GAGAGACAAAATTTATTTTA
1 -AGAGACAAAATTT-TTTTA
9418484 AGAGA
1 AGAGA
9418489 AACTGTCTCG
Statistics
Matches: 31, Mismatches: 6, Indels: 8
0.69 0.13 0.18
Matches are distributed among these distances:
16 3 0.10
17 10 0.32
19 15 0.48
20 3 0.10
ACGTcount: A:0.47, C:0.05, G:0.18, T:0.30
Consensus pattern (18 bp):
AGAGACAAAATTTTTTTA
Found at i:9422319 original size:24 final size:24
Alignment explanation
Indices: 9422290--9422341 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
9422280 TTTAAATGCA
*
9422290 TGATGCATGAAATGTCTGAGGCAT
1 TGATGCATGAAATGTCCGAGGCAT
9422314 TGATGCATGAAATGTCCGAGGCAT
1 TGATGCATGAAATGTCCGAGGCAT
9422338 TGAT
1 TGAT
9422342 CCAAAAAATG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.29, C:0.13, G:0.29, T:0.29
Consensus pattern (24 bp):
TGATGCATGAAATGTCCGAGGCAT
Found at i:9422350 original size:24 final size:24
Alignment explanation
Indices: 9422299--9422352 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
9422289 ATGATGCATG
* * **
9422299 AAATGTCTGAGGCATTGATGCATG
1 AAATGTCCGAGGCATTGATCCAAA
9422323 AAATGTCCGAGGCATTGATCCAAA
1 AAATGTCCGAGGCATTGATCCAAA
9422347 AAATGT
1 AAATGT
9422353 ACATGTTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26
Consensus pattern (24 bp):
AAATGTCCGAGGCATTGATCCAAA
Found at i:9425361 original size:27 final size:28
Alignment explanation
Indices: 9425321--9425390 Score: 124
Period size: 28 Copynumber: 2.5 Consensus size: 28
9425311 TTAATATTTT
9425321 AATTTCTTTAAAAAAATTATAAATTTAC
1 AATTTCTTTAAAAAAATTATAAATTTAC
*
9425349 CATTTCTTTAAAAAAATTATAAATTTAC
1 AATTTCTTTAAAAAAATTATAAATTTAC
9425377 AATTTC-TTAAAAAA
1 AATTTCTTTAAAAAA
9425391 CTATAAAAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.50, C:0.09, G:0.00, T:0.41
Consensus pattern (28 bp):
AATTTCTTTAAAAAAATTATAAATTTAC
Found at i:9425530 original size:27 final size:28
Alignment explanation
Indices: 9425490--9425559 Score: 124
Period size: 28 Copynumber: 2.5 Consensus size: 28
9425480 TTAATATTTT
9425490 AATTTCTTTAAAAAAATTATAAATTTAC
1 AATTTCTTTAAAAAAATTATAAATTTAC
*
9425518 CATTTCTTTAAAAAAATTATAAATTTAC
1 AATTTCTTTAAAAAAATTATAAATTTAC
9425546 AATTTC-TTAAAAAA
1 AATTTCTTTAAAAAA
9425560 CTATAAAAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.50, C:0.09, G:0.00, T:0.41
Consensus pattern (28 bp):
AATTTCTTTAAAAAAATTATAAATTTAC
Found at i:9425551 original size:169 final size:169
Alignment explanation
Indices: 9425272--9425607 Score: 672
Period size: 169 Copynumber: 2.0 Consensus size: 169
9425262 AAGCAAGCAA
9425272 TGACCCAACTAACATAAAACTAATTTCTTTTTTCAATTTTTAATATTTTAATTTCTTTAAAAAAA
1 TGACCCAACTAACATAAAACTAATTTCTTTTTTCAATTTTTAATATTTTAATTTCTTTAAAAAAA
9425337 TTATAAATTTACCATTTCTTTAAAAAAATTATAAATTTACAATTTCTTAAAAAACTATAAAAAAA
66 TTATAAATTTACCATTTCTTTAAAAAAATTATAAATTTACAATTTCTTAAAAAACTATAAAAAAA
9425402 TTATCTAAAGAAAATTTTACGTTCGTCTCAACATATTCT
131 TTATCTAAAGAAAATTTTACGTTCGTCTCAACATATTCT
9425441 TGACCCAACTAACATAAAACTAATTTCTTTTTTCAATTTTTAATATTTTAATTTCTTTAAAAAAA
1 TGACCCAACTAACATAAAACTAATTTCTTTTTTCAATTTTTAATATTTTAATTTCTTTAAAAAAA
9425506 TTATAAATTTACCATTTCTTTAAAAAAATTATAAATTTACAATTTCTTAAAAAACTATAAAAAAA
66 TTATAAATTTACCATTTCTTTAAAAAAATTATAAATTTACAATTTCTTAAAAAACTATAAAAAAA
9425571 TTATCTAAAGAAAATTTTACGTTCGTCTCAACATATT
131 TTATCTAAAGAAAATTTTACGTTCGTCTCAACATATT
9425608 TCTATAATCA
Statistics
Matches: 167, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
169 167 1.00
ACGTcount: A:0.43, C:0.13, G:0.02, T:0.41
Consensus pattern (169 bp):
TGACCCAACTAACATAAAACTAATTTCTTTTTTCAATTTTTAATATTTTAATTTCTTTAAAAAAA
TTATAAATTTACCATTTCTTTAAAAAAATTATAAATTTACAATTTCTTAAAAAACTATAAAAAAA
TTATCTAAAGAAAATTTTACGTTCGTCTCAACATATTCT
Found at i:9427139 original size:60 final size:60
Alignment explanation
Indices: 9427074--9427219 Score: 183
Period size: 60 Copynumber: 2.5 Consensus size: 60
9427064 ATTTGGGGAC
* * *
9427074 CAATTTAGAAAT-AGGGTCATAGTTTAG-GGATGAAATCATAATATTCAAAATTTTAAGGA
1 CAATTTAGAAATGAGAGTCATAGTTT-GTGGATGAAATCAGAATATTCAAAAGTTTAAGGA
*
9427133 CTAATTTAG-AATGAGAGTCATAGTTTGTGGATGAAATTAGAATATTCAAAAGTTTAAGGAA
1 C-AATTTAGAAATGAGAGTCATAGTTTGTGGATGAAATCAGAATATTCAAAAGTTTAAGG-A
* *
9427194 CAATTTA-AAATGAAAGTTATAGTTTG
1 CAATTTAGAAATGAGAGTCATAGTTTG
9427220 GGAACATATG
Statistics
Matches: 76, Mismatches: 6, Indels: 9
0.84 0.07 0.10
Matches are distributed among these distances:
59 5 0.07
60 69 0.91
61 2 0.03
ACGTcount: A:0.42, C:0.05, G:0.19, T:0.34
Consensus pattern (60 bp):
CAATTTAGAAATGAGAGTCATAGTTTGTGGATGAAATCAGAATATTCAAAAGTTTAAGGA
Found at i:9430194 original size:13 final size:13
Alignment explanation
Indices: 9430176--9430202 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
9430166 TAAAGAATGG
9430176 CTAAATTAAGAGT
1 CTAAATTAAGAGT
9430189 CTAAATTAAGAGT
1 CTAAATTAAGAGT
9430202 C
1 C
9430203 GATCTTTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.11, G:0.15, T:0.30
Consensus pattern (13 bp):
CTAAATTAAGAGT
Found at i:9433649 original size:3 final size:3
Alignment explanation
Indices: 9433571--9433633 Score: 85
Period size: 3 Copynumber: 20.7 Consensus size: 3
9433561 CTCCATTTTC
9433571 TAT TAT TAT TATT TAT TAT TAT TAT TAT T-T TAT ATAT TAT TAT TAT
1 TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT
9433617 TA- TATT TAT TAT TAT TA
1 TAT TA-T TAT TAT TAT TA
9433634 AATAAATAAT
Statistics
Matches: 55, Mismatches: 0, Indels: 10
0.85 0.00 0.15
Matches are distributed among these distances:
2 4 0.07
3 43 0.78
4 8 0.15
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:9435066 original size:3 final size:3
Alignment explanation
Indices: 9435058--9435087 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
9435048 TTTACTTTTA
*
9435058 ATT ATT ATT ACT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
9435088 TAGCCATAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:9438148 original size:2 final size:2
Alignment explanation
Indices: 9438141--9438188 Score: 89
Period size: 2 Copynumber: 24.5 Consensus size: 2
9438131 TCACATACAT
9438141 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
9438183 T- TC TC T
1 TC TC TC T
9438189 GCTTGTCTCG
Statistics
Matches: 45, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 44 0.98
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:9438407 original size:10 final size:10
Alignment explanation
Indices: 9438394--9438444 Score: 50
Period size: 10 Copynumber: 4.7 Consensus size: 10
9438384 ACACGCTGGG
9438394 CATCCGAGGC
1 CATCCGAGGC
9438404 CATCCGACCGAGGC
1 CAT-C--C-GAGGC
9438418 CATCCGAGAG-
1 CATCCGAG-GC
9438428 CATCCGAGGC
1 CATCCGAGGC
9438438 CATCCGA
1 CATCCGA
9438445 ACGAGCTATG
Statistics
Matches: 35, Mismatches: 0, Indels: 12
0.74 0.00 0.26
Matches are distributed among these distances:
9 1 0.03
10 21 0.60
11 3 0.09
13 2 0.06
14 8 0.23
ACGTcount: A:0.24, C:0.39, G:0.27, T:0.10
Consensus pattern (10 bp):
CATCCGAGGC
Found at i:9438416 original size:14 final size:14
Alignment explanation
Indices: 9438397--9438424 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
9438387 CGCTGGGCAT
9438397 CCGAGGCCATCCGA
1 CCGAGGCCATCCGA
9438411 CCGAGGCCATCCGA
1 CCGAGGCCATCCGA
9438425 GAGCATCCGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.43, G:0.29, T:0.07
Consensus pattern (14 bp):
CCGAGGCCATCCGA
Found at i:9438436 original size:20 final size:20
Alignment explanation
Indices: 9438411--9438477 Score: 73
Period size: 20 Copynumber: 3.2 Consensus size: 20
9438401 GGCCATCCGA
9438411 CCGAGGCCATCCGAGAGCAT
1 CCGAGGCCATCCGAGAGCAT
9438431 CCGAGGCCATCCGAACGAGCTAT
1 CCGAGGCCATCCG-A-GAGC-AT
* * *
9438454 GCGAGGGCATCCGAG-GCAA
1 CCGAGGCCATCCGAGAGCAT
9438473 CCGAG
1 CCGAG
9438478 CGAGCTATGC
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
19 5 0.12
20 15 0.38
21 2 0.05
22 5 0.12
23 13 0.32
ACGTcount: A:0.25, C:0.33, G:0.33, T:0.09
Consensus pattern (20 bp):
CCGAGGCCATCCGAGAGCAT
Found at i:9438487 original size:32 final size:33
Alignment explanation
Indices: 9438391--9438514 Score: 135
Period size: 32 Copynumber: 3.8 Consensus size: 33
9438381 CCAACACGCT
* * * *
9438391 GGGCATCCGAGGCCATCCGACCGAGGCCATCCGA
1 GGGCATCCGAGGCCAACCGAGCGA-GCTATGCGA
* * *
9438425 GAGCATCCGAGGCCATCCGAACGAGCTATGCGA
1 GGGCATCCGAGGCCAACCGAGCGAGCTATGCGA
9438458 GGGCATCCGAGG-CAACCGAGCGAGCTATGCGA
1 GGGCATCCGAGGCCAACCGAGCGAGCTATGCGA
* *
9438490 GGGAATCCGAGG-GAAGCCGAGCGAG
1 GGGCATCCGAGGCCAA-CCGAGCGAG
9438515 GGTAGGTCGC
Statistics
Matches: 80, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
32 31 0.39
33 27 0.34
34 22 0.28
ACGTcount: A:0.25, C:0.30, G:0.36, T:0.09
Consensus pattern (33 bp):
GGGCATCCGAGGCCAACCGAGCGAGCTATGCGA
Found at i:9438551 original size:29 final size:29
Alignment explanation
Indices: 9438518--9438574 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
9438508 GAGCGAGGGT
*
9438518 AGGTCGCCCGGAGTACATGGCGACCTATA
1 AGGTCGCCCGGAGGACATGGCGACCTATA
* *
9438547 AGGTCGCCCGGAGGGCATTGCGACCTAT
1 AGGTCGCCCGGAGGACATGGCGACCTAT
9438575 GTGTTGGGAC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.21, C:0.28, G:0.33, T:0.18
Consensus pattern (29 bp):
AGGTCGCCCGGAGGACATGGCGACCTATA
Found at i:9439652 original size:23 final size:23
Alignment explanation
Indices: 9439626--9439670 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
9439616 TTCGTGAGTA
9439626 TTAAACAAACATATTCATAAACG
1 TTAAACAAACATATTCATAAACG
* * *
9439649 TTAAACGAATATATTTATAAAC
1 TTAAACAAACATATTCATAAAC
9439671 ACAAAAACGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.51, C:0.13, G:0.04, T:0.31
Consensus pattern (23 bp):
TTAAACAAACATATTCATAAACG
Found at i:9445622 original size:52 final size:54
Alignment explanation
Indices: 9445560--9445664 Score: 196
Period size: 52 Copynumber: 2.0 Consensus size: 54
9445550 TTTTCTCTCT
9445560 AAAAATGGTATCATTAGCTCTTTGCGTTAATGA-TTTTGTGCATA-TAGTAAAA
1 AAAAATGGTATCATTAGCTCTTTGCGTTAATGATTTTTGTGCATAGTAGTAAAA
9445612 AAAAATGGTATCATTAGCTCTTTGCGTTAATGATTTTTGTGCATAGTAGTAAA
1 AAAAATGGTATCATTAGCTCTTTGCGTTAATGATTTTTGTGCATAGTAGTAAA
9445665 CCCTAGGCAG
Statistics
Matches: 51, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
52 33 0.65
53 11 0.22
54 7 0.14
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.39
Consensus pattern (54 bp):
AAAAATGGTATCATTAGCTCTTTGCGTTAATGATTTTTGTGCATAGTAGTAAAA
Found at i:9450004 original size:91 final size:89
Alignment explanation
Indices: 9449835--9450014 Score: 342
Period size: 91 Copynumber: 2.0 Consensus size: 89
9449825 ATACGGAGTT
9449835 CAGCCAATTGTGCTTACGTCTCCGGGTGCTGCAGATCTTTTACTAAGAGAGAAATTTACAGGTGT
1 CAGCCAATTGTGCTTACGTCTCCGGGTGCTGCAGATCTTTTACTAAGAGAGAAATTTACAGGTGT
9449900 TTACAAAACACTCACTACTCACAA
66 TTACAAAACACTCACTACTCACAA
9449924 CAGCCAATTGTGCTTACGTCTCCGGGCTGCTGCAGATCTTTTACTAAGAGAGAAAATTTACAGGT
1 CAGCCAATTGTGCTTACGTCTCCGGG-TGCTGCAGATCTTTTACTAAGAGAG-AAATTTACAGGT
9449989 GTTTACAAAACACTCACTACTCACAA
64 GTTTACAAAACACTCACTACTCACAA
9450015 GAAAGCTCTC
Statistics
Matches: 89, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
89 26 0.29
90 25 0.28
91 38 0.43
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.28
Consensus pattern (89 bp):
CAGCCAATTGTGCTTACGTCTCCGGGTGCTGCAGATCTTTTACTAAGAGAGAAATTTACAGGTGT
TTACAAAACACTCACTACTCACAA
Found at i:9462549 original size:45 final size:45
Alignment explanation
Indices: 9462485--9462575 Score: 182
Period size: 45 Copynumber: 2.0 Consensus size: 45
9462475 TGCATGCTGT
9462485 TGATTAATTGGTGGGGAAAAGAAAACACAATAAACCCCCATAGAG
1 TGATTAATTGGTGGGGAAAAGAAAACACAATAAACCCCCATAGAG
9462530 TGATTAATTGGTGGGGAAAAGAAAACACAATAAACCCCCATAGAG
1 TGATTAATTGGTGGGGAAAAGAAAACACAATAAACCCCCATAGAG
9462575 T
1 T
9462576 TACCAGGTAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.44, C:0.15, G:0.22, T:0.19
Consensus pattern (45 bp):
TGATTAATTGGTGGGGAAAAGAAAACACAATAAACCCCCATAGAG
Found at i:9464098 original size:31 final size:31
Alignment explanation
Indices: 9464063--9464124 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
9464053 TATAATCCTC
*
9464063 CAACATTTAGT-TCATTTGTAATATGGTCCCT
1 CAACATTTAGTCT-ATTTGCAATATGGTCCCT
9464094 CAACATTTAGTCTATTTGCAATATGGTCCCT
1 CAACATTTAGTCTATTTGCAATATGGTCCCT
9464125 GACGTAACTG
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
31 28 0.97
32 1 0.03
ACGTcount: A:0.26, C:0.21, G:0.13, T:0.40
Consensus pattern (31 bp):
CAACATTTAGTCTATTTGCAATATGGTCCCT
Found at i:9474107 original size:27 final size:27
Alignment explanation
Indices: 9474069--9474123 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
9474059 CACAGAAGAA
9474069 TAACTAATTCATACATAATCATTTAAG
1 TAACTAATTCATACATAATCATTTAAG
9474096 TAACTAATTCATACATAATCATTTAAG
1 TAACTAATTCATACATAATCATTTAAG
9474123 T
1 T
9474124 TTTTGTTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.44, C:0.15, G:0.04, T:0.38
Consensus pattern (27 bp):
TAACTAATTCATACATAATCATTTAAG
Found at i:9477591 original size:15 final size:16
Alignment explanation
Indices: 9477564--9477599 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
9477554 TAAAAATGAT
9477564 TATGAACATCTACTAA
1 TATGAACATCTACTAA
9477580 TATGAA-ATCTACTAA
1 TATGAACATCTACTAA
*
9477595 CATGA
1 TATGA
9477600 GCGTGTAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 13 0.68
16 6 0.32
ACGTcount: A:0.44, C:0.17, G:0.08, T:0.31
Consensus pattern (16 bp):
TATGAACATCTACTAA
Found at i:9478927 original size:2 final size:2
Alignment explanation
Indices: 9478922--9478988 Score: 127
Period size: 2 Copynumber: 34.0 Consensus size: 2
9478912 TTTTTTAAAG
9478922 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
9478964 TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
9478989 AATGGTATGA
Statistics
Matches: 64, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
1 1 0.02
2 63 0.98
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:9481114 original size:36 final size:36
Alignment explanation
Indices: 9481073--9481247 Score: 287
Period size: 36 Copynumber: 4.9 Consensus size: 36
9481063 ATTTATCCAT
* * *
9481073 TATCAACTTTGATACATTCATGTATCAATGTTATCA
1 TATCAGCTTTGGTACATTCGTGTATCAATGTTATCA
* *
9481109 TATCAACTTTGGTACATTCGTGTATTAATGTTATCA
1 TATCAGCTTTGGTACATTCGTGTATCAATGTTATCA
**
9481145 TATCAGCTTTAATACATTCGTGTATCAATGTTATCA
1 TATCAGCTTTGGTACATTCGTGTATCAATGTTATCA
9481181 TATCAGCTTTGGTACATTCGTGTATCAATGTTATCA
1 TATCAGCTTTGGTACATTCGTGTATCAATGTTATCA
9481217 TATCAGCTTTGGTACATTCGTGTATCAATGT
1 TATCAGCTTTGGTACATTCGTGTATCAATGT
9481248 CCAGCACCGA
Statistics
Matches: 130, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 130 1.00
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.42
Consensus pattern (36 bp):
TATCAGCTTTGGTACATTCGTGTATCAATGTTATCA
Found at i:9491081 original size:150 final size:148
Alignment explanation
Indices: 9490743--9491490 Score: 953
Period size: 150 Copynumber: 5.0 Consensus size: 148
9490733 TCTTGAGAAG
** *
9490743 CATTCAATGTTTTCCTCTTCCAATAACTACCATAATAGGGTCTCTTCTCCAAAGGAATACTTTGG
1 CATTCAATGTTTTCCTCTT-CAGCAACTACCATAATAGGGTCTCTTTTCCAAAGGAATACTTTGG
* * * * *
9490808 AATCTGGGGCTAAATCTTGTATTTGATTTCTTTCCTGATCCCGAGTCAAGTACATTCTGTATCTT
65 AGTCTGGGGCTAACTCTAGTATCTGATATCTTT-CT--T---GAGTCAAGTACATTCTGTATCTT
* *
9490873 CTCAATGTTTGAGTAACCACGAGACT
124 CTCAATGTTTGAGTTACCATGAGA-T
* *
9490899 CATTCAATGTTTTCCTCTTCAGACAACCACCATAATAGGGTCTCTTTTCCACAGGAATACTTTGG
1 CATTCAATGTTTTCCTCTTCAG-CAACTACCATAATAGGGTCTCTTTTCCAAAGGAATACTTTGG
** * *
9490964 AGTCTGTAGCTAACTCTAGTATCTGATATCTTTCTTGAGTCAAGTACATTCCGTATCTTCTTAAT
65 AGTCTGGGGCTAACTCTAGTATCTGATATCTTTCTTGAGTCAAGTACATTCTGTATCTTCTCAAT
* * *
9491029 ATTTGAGTTACCGTGTGTAT
130 GTTTGAGTTACCATGAG-AT
* *
9491049 CATTCAATGTTTTCCTCTTTCAGCAACTACCATAATAGGG--TCTTCTCCAAAGGAATGCTTCT-
1 CATTCAATGTTTTCCTC-TTCAGCAACTACCATAATAGGGTCTCTTTTCCAAAGGAATACTT-TG
* * * *
9491111 GAATCTGGGGCTAACTCTAGTATTTGATGTCTTTCTTGAATCAAGTACATTCTGTATCTTCTCAA
64 GAGTCTGGGGCTAACTCTAGTATCTGATATCTTTCTTGAGTCAAGTACATTCTGTATCTTCTCAA
9491176 TGTTTGAGTTACCATGAGAAT
129 TGTTTGAGTTACCATGAG-AT
* * * * *
9491197 CATTCAATGTTTTCCTCTTCTGAAAGCTACCATCATATGGTCTCTTTTCCAAAGGAATACTTTAG
1 CATTCAATGTTTTCCTCTTCAGCAA-CTACCATAATAGGGTCTCTTTTCCAAAGGAATACTTTGG
*
9491262 AGTCTGGGGCTAACTCTAGTATCTGATATCTTTCTTGAGTCAAGTACATTATGTATCTTCTCAAT
65 AGTCTGGGGCTAACTCTAGTATCTGATATCTTTCTTGAGTCAAGTACATTCTGTATCTTCTCAAT
* * *
9491327 GTTTGAATTACTATAAGCAT
130 GTTTGAGTTACCATGAG-AT
* * * * *
9491347 CATTCAATGTTTTCTTCTTCTGACAACCAACATAATTGGGTCTCTTTTCCAAAGGAATACTTTGG
1 CATTCAATGTTTTCCTCTTCAG-CAACTACCATAATAGGGTCTCTTTTCCAAAGGAATACTTTGG
* *
9491412 AGTCTGGGGCTAACTCTAGTATCTGATATCTTTCATGAGTCAAGTACATTCTGTATCTTCTCAGT
65 AGTCTGGGGCTAACTCTAGTATCTGATATCTTTCTTGAGTCAAGTACATTCTGTATCTTCTCAAT
*
9491477 GTTTGAGTTGCCAT
130 GTTTGAGTTACCAT
9491491 TTTTTGGTAA
Statistics
Matches: 519, Mismatches: 64, Indels: 24
0.86 0.11 0.04
Matches are distributed among these distances:
147 6 0.01
148 120 0.23
149 2 0.00
150 295 0.57
151 8 0.02
153 1 0.00
155 4 0.01
156 83 0.16
ACGTcount: A:0.25, C:0.21, G:0.16, T:0.38
Consensus pattern (148 bp):
CATTCAATGTTTTCCTCTTCAGCAACTACCATAATAGGGTCTCTTTTCCAAAGGAATACTTTGGA
GTCTGGGGCTAACTCTAGTATCTGATATCTTTCTTGAGTCAAGTACATTCTGTATCTTCTCAATG
TTTGAGTTACCATGAGAT
Found at i:9491287 original size:298 final size:299
Alignment explanation
Indices: 9490743--9491490 Score: 1000
Period size: 298 Copynumber: 2.5 Consensus size: 299
9490733 TCTTGAGAAG
* **
9490743 CATTCAATGTTTTCCTCTTCCAATAACTACCATAATAGGGTCTCTTCTCCAAAGGAATACTTTGG
1 CATTCAATGTTTTCCTCTTTCAGCAACTACCATAATAGGG-CTCTTCTCCAAAGGAATACTTTGG
* * *
9490808 AATCTGGGGCTAAATCTTGTATTTGATTTCTTTCCTGATCCCGAGTCAAGTACATTCTGTATCTT
65 AATCTGGGGCTAACTCTAGTATTTGATATCTTT-CT--T---GAGTCAAGTACATTCTGTATCTT
* * *
9490873 CTCAATGTTTGAGTAACCACGAGACTCATTCAATGTTTTCCTCTTCAGACAACCACCATAATAGG
124 CTCAATGTTTGAGTTACCATGAGAATCATTCAATGTTTTCCTCTTCAGACAACCACCATAATAGG
* * *
9490938 GTCTCTTTTCCACAGGAATACTTTGGAGTCTGTAGCTAACTCTAGTATCTGATATCTTTCTTGAG
189 GTCTCTTTTCCAAAGGAATACTTTAGAGTCTGGAGCTAACTCTAGTATCTGATATCTTTCTTGAG
* * * * ** *
9491003 TCAAGTACATTCCGTATCTTCTTAATATTTGAGTTACCGTGTGTAT
254 TCAAGTACATTACGTATCTTCTCAATATTTGAATTACCATAAGCAT
*
9491049 CATTCAATGTTTTCCTCTTTCAGCAACTACCATAATAGGG-TCTTCTCCAAAGGAATGCTTCT-G
1 CATTCAATGTTTTCCTCTTTCAGCAACTACCATAATAGGGCTCTTCTCCAAAGGAATACTT-TGG
* *
9491112 AATCTGGGGCTAACTCTAGTATTTGATGTCTTTCTTGAATCAAGTACATTCTGTATCTTCTCAAT
65 AATCTGGGGCTAACTCTAGTATTTGATATCTTTCTTGAGTCAAGTACATTCTGTATCTTCTCAAT
* * * *
9491177 GTTTGAGTTACCATGAGAATCATTCAATGTTTTCCTCTTCTGA-AAGCTACCATCATATGGTCTC
130 GTTTGAGTTACCATGAGAATCATTCAATGTTTTCCTCTTCAGACAA-CCACCATAATAGGGTCTC
*
9491241 TTTTCCAAAGGAATACTTTAGAGTCTGGGGCTAACTCTAGTATCTGATATCTTTCTTGAGTCAAG
194 TTTTCCAAAGGAATACTTTAGAGTCTGGAGCTAACTCTAGTATCTGATATCTTTCTTGAGTCAAG
* * *
9491306 TACATTATGTATCTTCTCAATGTTTGAATTACTATAAGCAT
259 TACATTACGTATCTTCTCAATATTTGAATTACCATAAGCAT
* * * * * *
9491347 CATTCAATGTTTTCTTC-TTCTGACAACCAACATAATTGGGTCTCTTTTCCAAAGGAATACTTTG
1 CATTCAATGTTTTCCTCTTTCAG-CAACTACCATAATAGGG-CTCTTCTCCAAAGGAATACTTTG
* * * *
9491411 GAGTCTGGGGCTAACTCTAGTATCTGATATCTTTCATGAGTCAAGTACATTCTGTATCTTCTCAG
64 GAATCTGGGGCTAACTCTAGTATTTGATATCTTTCTTGAGTCAAGTACATTCTGTATCTTCTCAA
*
9491476 TGTTTGAGTTGCCAT
129 TGTTTGAGTTACCAT
9491491 TTTTTGGTAA
Statistics
Matches: 393, Mismatches: 43, Indels: 18
0.87 0.09 0.04
Matches are distributed among these distances:
297 6 0.02
298 204 0.52
299 1 0.00
300 91 0.23
301 1 0.00
303 2 0.01
304 50 0.13
305 1 0.00
306 37 0.09
ACGTcount: A:0.25, C:0.21, G:0.16, T:0.38
Consensus pattern (299 bp):
CATTCAATGTTTTCCTCTTTCAGCAACTACCATAATAGGGCTCTTCTCCAAAGGAATACTTTGGA
ATCTGGGGCTAACTCTAGTATTTGATATCTTTCTTGAGTCAAGTACATTCTGTATCTTCTCAATG
TTTGAGTTACCATGAGAATCATTCAATGTTTTCCTCTTCAGACAACCACCATAATAGGGTCTCTT
TTCCAAAGGAATACTTTAGAGTCTGGAGCTAACTCTAGTATCTGATATCTTTCTTGAGTCAAGTA
CATTACGTATCTTCTCAATATTTGAATTACCATAAGCAT
Found at i:9491920 original size:33 final size:33
Alignment explanation
Indices: 9491875--9491939 Score: 112
Period size: 33 Copynumber: 2.0 Consensus size: 33
9491865 TGCCACCGTT
*
9491875 CTGTAGAATTTGAAACCTTGGACTAACTCTTCG
1 CTGTAGAATTTGAAACCTTGAACTAACTCTTCG
*
9491908 CTGTAGATTTTGAAACCTTGAACTAACTCTTC
1 CTGTAGAATTTGAAACCTTGAACTAACTCTTC
9491940 TGTGTATTTC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.35
Consensus pattern (33 bp):
CTGTAGAATTTGAAACCTTGAACTAACTCTTCG
Found at i:9496629 original size:33 final size:33
Alignment explanation
Indices: 9496587--9496655 Score: 111
Period size: 33 Copynumber: 2.1 Consensus size: 33
9496577 AGTCATCACC
* *
9496587 TTCAGAAATGGGAATGGACACAGCGGACTCCGT
1 TTCAGAAATGGGAATAGACACAGCAGACTCCGT
*
9496620 TTCAGAAATGGGAATAGACACAGCAGACTCCTT
1 TTCAGAAATGGGAATAGACACAGCAGACTCCGT
9496653 TTC
1 TTC
9496656 CCCAGCAGCT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.22
Consensus pattern (33 bp):
TTCAGAAATGGGAATAGACACAGCAGACTCCGT
Found at i:9499562 original size:19 final size:18
Alignment explanation
Indices: 9499527--9499562 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
9499517 AATTAATACT
*
9499527 AAATTTAAACTTAAAATC
1 AAATTTAAACCTAAAATC
9499545 AAATTTAAACACTAAAAT
1 AAATTTAAAC-CTAAAAT
9499563 ATGTATTTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.58, C:0.11, G:0.00, T:0.31
Consensus pattern (18 bp):
AAATTTAAACCTAAAATC
Found at i:9507242 original size:320 final size:314
Alignment explanation
Indices: 9506608--9507242 Score: 1216
Period size: 320 Copynumber: 2.0 Consensus size: 314
9506598 TGATCTCTTT
9506608 GCAAATCTGAAAATTCAGGCTCTGTTCGCCCGCATGCAAATCAAACTCTGACAGACCTTTTCCTA
1 GCAAATCTGAAAATTCAGGCTCTGTTCGCCCGCATGCAAATCAAACTCTGACAGACCTTTTCCTA
9506673 CTCTTCAAGTAGATTTTCGTCATATATAAAGCATATTCGCACTTAATATTTATTATATTTCAGAT
66 CTCTTCAAGTAGATTTTCGTCATATATAAAGCATATTCGCACTTAATATTTATTATATTTCAGAT
9506738 TGATTTGATGAAGACAATTGGGCTTGGATTCGTTATTGCTAAAGTGGGAAACATAGAATATATAT
131 TGATTTGATGAAGACAATTGGGCTTGGATTCGTTATTGCTAAAGTGGGAAACATAGAATATATAT
9506803 TCTCTCTCTGCTCATCGTGCGGTAGAGAAGAAAAGGTATGAAAAAGAAAATCATGCAGGAATGAT
196 TCTCTCTCTGCTCATCGTGCGGTAGAGAAGAAAAGGTATGAAAAAGAAAATCATGCAGGAATGAT
9506868 TGCAAAGGACATGCGTGAAAGAACACAAAGCCAAAATCAACTTGACATGAAAAA
261 TGCAAAGGACATGCGTGAAAGAACACAAAGCCAAAATCAACTTGACATGAAAAA
9506922 GCAAATCTGAAAATTCAGGCTCTGTTCGCCCGCATGCAAATCAAACTCTGACAGACCTTTTCCTA
1 GCAAATCTGAAAATTCAGGCTCTGTTCGCCCGCATGCAAATCAAACTCTGACAGACCTTTTCCTA
9506987 CTCTTCAAGTAGATTTTCGTCATATATAAAGCATATTCGCACTTAATATTTATTATTATATTTCA
66 CTCTTCAAGTAGATTTTCGTCATATATAAAGCATATTCGCACTTAATA--T-TTATTATATTTCA
9507052 GATTGATTTGATGAAGACAATTGGGCTTGGATTCGTTATTGGCTAAAGTGGGAAACATAGAATAT
128 GATTGATTTGATGAAGACAATTGGGCTTGGATTCGTTATT-GCTAAAGTGGGAAACATAGAATAT
9507117 AATATTTCTCTCTCTGCTCATCGTGCGGTAGAGAAGAAAAGGTATGAAAAAGAAAATCATGCAGG
192 -ATA-TTCTCTCTCTGCTCATCGTGCGGTAGAGAAGAAAAGGTATGAAAAAGAAAATCATGCAGG
9507182 AATGATTGCAAAGGACATGCGTGAAAGAACACAAAGCCAAAATCAACTTGACATGAAAAA
255 AATGATTGCAAAGGACATGCGTGAAAGAACACAAAGCCAAAATCAACTTGACATGAAAAA
9507242 G
1 G
9507243 GTTAAATATT
Statistics
Matches: 315, Mismatches: 0, Indels: 6
0.98 0.00 0.02
Matches are distributed among these distances:
314 113 0.36
316 1 0.00
317 53 0.17
318 24 0.08
319 3 0.01
320 121 0.38
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.29
Consensus pattern (314 bp):
GCAAATCTGAAAATTCAGGCTCTGTTCGCCCGCATGCAAATCAAACTCTGACAGACCTTTTCCTA
CTCTTCAAGTAGATTTTCGTCATATATAAAGCATATTCGCACTTAATATTTATTATATTTCAGAT
TGATTTGATGAAGACAATTGGGCTTGGATTCGTTATTGCTAAAGTGGGAAACATAGAATATATAT
TCTCTCTCTGCTCATCGTGCGGTAGAGAAGAAAAGGTATGAAAAAGAAAATCATGCAGGAATGAT
TGCAAAGGACATGCGTGAAAGAACACAAAGCCAAAATCAACTTGACATGAAAAA
Found at i:9512208 original size:34 final size:34
Alignment explanation
Indices: 9512165--9512235 Score: 117
Period size: 34 Copynumber: 2.1 Consensus size: 34
9512155 GTTTCGAAGA
*
9512165 TGGGTCCGATTAAG-TCTCTAAAAGGTGGCGGCGC
1 TGGGTCCGATTAAGTTC-CTAAAAGGTGACGGCGC
9512199 TGGGTCCGATTAAGTTCCTAAAAGGTGACGGCGC
1 TGGGTCCGATTAAGTTCCTAAAAGGTGACGGCGC
9512233 TGG
1 TGG
9512236 TGGCGATGAC
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
34 33 0.94
35 2 0.06
ACGTcount: A:0.21, C:0.20, G:0.35, T:0.24
Consensus pattern (34 bp):
TGGGTCCGATTAAGTTCCTAAAAGGTGACGGCGC
Found at i:9516493 original size:17 final size:16
Alignment explanation
Indices: 9516460--9516494 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
9516450 GTACTATTCA
*
9516460 CGTGAATAGTGAATTT
1 CGTGAATAGTAAATTT
9516476 CGTGAATAGTAAAATTT
1 CGTGAATAGT-AAATTT
9516493 CG
1 CG
9516495 GTAGGCGATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.34, C:0.09, G:0.23, T:0.34
Consensus pattern (16 bp):
CGTGAATAGTAAATTT
Found at i:9522217 original size:18 final size:19
Alignment explanation
Indices: 9522184--9522221 Score: 69
Period size: 18 Copynumber: 2.1 Consensus size: 19
9522174 TTTTAATAGA
9522184 TTGATCTCATTTTTGTGGT
1 TTGATCTCATTTTTGTGGT
9522203 TTGATCTCA-TTTTGTGGT
1 TTGATCTCATTTTTGTGGT
9522221 T
1 T
9522222 CGTTTGCCGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 10 0.53
19 9 0.47
ACGTcount: A:0.11, C:0.11, G:0.21, T:0.58
Consensus pattern (19 bp):
TTGATCTCATTTTTGTGGT
Found at i:9533803 original size:47 final size:47
Alignment explanation
Indices: 9533725--9533851 Score: 155
Period size: 47 Copynumber: 2.7 Consensus size: 47
9533715 ATATAATAAA
* * ** *
9533725 TCTAGTATAACGATGATTATTTGTAGGTTGATATTGTTGGTGTCAAG
1 TCTAGTATAATGATGATTATTTGTAGATTGATAAGGTTGATGTCAAG
* * * *
9533772 TCTAATATAATGATGACTATTTATAGATTGATAAGGTTGATGTCATG
1 TCTAGTATAATGATGATTATTTGTAGATTGATAAGGTTGATGTCAAG
* *
9533819 TCTAGTATAATGATGGTTATTTGTATATTGATA
1 TCTAGTATAATGATGATTATTTGTAGATTGATA
9533852 GATTAAATAG
Statistics
Matches: 66, Mismatches: 14, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
47 66 1.00
ACGTcount: A:0.30, C:0.06, G:0.21, T:0.43
Consensus pattern (47 bp):
TCTAGTATAATGATGATTATTTGTAGATTGATAAGGTTGATGTCAAG
Found at i:9534020 original size:36 final size:36
Alignment explanation
Indices: 9533970--9534048 Score: 119
Period size: 36 Copynumber: 2.2 Consensus size: 36
9533960 TTAAATGTTC
*
9533970 TAAA-AAA-TTTAAGATTCGATC-ACTGAAAGAATGA
1 TAAATAAATTTTAAGATTCGACCAAC-GAAAGAATGA
9534004 TAAATAAATTTTAAGATTCGACCAACGAAAGAATGA
1 TAAATAAATTTTAAGATTCGACCAACGAAAGAATGA
9534040 TAAATAAAT
1 TAAATAAAT
9534049 ATTCATTTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
34 4 0.10
35 3 0.07
36 32 0.78
37 2 0.05
ACGTcount: A:0.52, C:0.09, G:0.13, T:0.27
Consensus pattern (36 bp):
TAAATAAATTTTAAGATTCGACCAACGAAAGAATGA
Found at i:9538295 original size:75 final size:75
Alignment explanation
Indices: 9538206--9538372 Score: 253
Period size: 75 Copynumber: 2.2 Consensus size: 75
9538196 CCTAAAAATC
* *
9538206 CCAAAGAATCATAAACTCTAAATCGTAATCCCTAAAAATCATAAAAATAATTTTTTAGAATGAAT
1 CCAAAAAATCATAAACTCTAAATCGTAATCCATAAAAATCATAAAAATAATTTTTTAGAATGAAT
9538271 ATAGGGATTA
66 ATAGGGATTA
* * * * * *
9538281 CCAAAAAATCATAAACTCTAAATTGTAATTCATAAAAATCATAAGATTCATTTTTTATAATGAAT
1 CCAAAAAATCATAAACTCTAAATCGTAATCCATAAAAATCATAAAAATAATTTTTTAGAATGAAT
9538346 ATAGGGATTA
66 ATAGGGATTA
9538356 CCAAAAAAATCATAAAC
1 CC-AAAAAATCATAAAC
9538373 CCCTAAAAAT
Statistics
Matches: 83, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
75 69 0.83
76 14 0.17
ACGTcount: A:0.49, C:0.13, G:0.08, T:0.30
Consensus pattern (75 bp):
CCAAAAAATCATAAACTCTAAATCGTAATCCATAAAAATCATAAAAATAATTTTTTAGAATGAAT
ATAGGGATTA
Found at i:9543469 original size:2 final size:2
Alignment explanation
Indices: 9543390--9543450 Score: 122
Period size: 2 Copynumber: 30.5 Consensus size: 2
9543380 TAAGAGCGTG
9543390 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
9543432 TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA T
9543451 GGCGAATTTT
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 59 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:9546238 original size:13 final size:13
Alignment explanation
Indices: 9546220--9546273 Score: 76
Period size: 13 Copynumber: 4.2 Consensus size: 13
9546210 AAGATTTAAA
9546220 TGAATTTGGAGGT
1 TGAATTTGGAGGT
9546233 TGAATTTGGAGGT
1 TGAATTTGGAGGT
*
9546246 TGAATTT-GA-CT
1 TGAATTTGGAGGT
9546257 TGAAATTTGGAGGT
1 TG-AATTTGGAGGT
9546271 TGA
1 TGA
9546274 TATCTTTTCC
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
11 3 0.08
12 7 0.19
13 23 0.64
14 3 0.08
ACGTcount: A:0.26, C:0.02, G:0.33, T:0.39
Consensus pattern (13 bp):
TGAATTTGGAGGT
Found at i:9549812 original size:22 final size:22
Alignment explanation
Indices: 9549784--9549826 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
9549774 CAAATATCTA
9549784 TAGATTATCAAATTGATTTAAG
1 TAGATTATCAAATTGATTTAAG
9549806 TAGATTATCAAATTGATTTAA
1 TAGATTATCAAATTGATTTAA
9549827 AGTAAATGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.42, C:0.05, G:0.12, T:0.42
Consensus pattern (22 bp):
TAGATTATCAAATTGATTTAAG
Found at i:9555662 original size:24 final size:24
Alignment explanation
Indices: 9555628--9555688 Score: 113
Period size: 24 Copynumber: 2.5 Consensus size: 24
9555618 GCATAGGTAG
*
9555628 TGCATCAATACACCCGATAAGGAA
1 TGCATCGATACACCCGATAAGGAA
9555652 TGCATCGATACACCCGATAAGGAA
1 TGCATCGATACACCCGATAAGGAA
9555676 TGCATCGATACAC
1 TGCATCGATACAC
9555689 TATAGTGTGT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.38, C:0.26, G:0.18, T:0.18
Consensus pattern (24 bp):
TGCATCGATACACCCGATAAGGAA
Found at i:9568888 original size:20 final size:21
Alignment explanation
Indices: 9568863--9568903 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
9568853 TGGAACTTTT
9568863 TAATTT-TTTTATAGCATCTC
1 TAATTTATTTTATAGCATCTC
9568883 TAATTTAATTTTATAGCATCT
1 TAATTT-ATTTTATAGCATCT
9568904 GTTATGGGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 6 0.32
22 13 0.68
ACGTcount: A:0.29, C:0.12, G:0.05, T:0.54
Consensus pattern (21 bp):
TAATTTATTTTATAGCATCTC
Found at i:9571613 original size:5 final size:5
Alignment explanation
Indices: 9571603--9571717 Score: 216
Period size: 5 Copynumber: 23.4 Consensus size: 5
9571593 TACCGCACTG
9571603 ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATA-T -TATT ATATT
1 ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT
9571651 ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT
1 ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT
9571701 ATATT ATATT ATATT AT
1 ATATT ATATT ATATT AT
9571718 TTTCCTTTAG
Statistics
Matches: 108, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
3 2 0.02
4 2 0.02
5 104 0.96
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
ATATT
Found at i:9575156 original size:17 final size:17
Alignment explanation
Indices: 9575134--9575167 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
9575124 AATGAAATTC
*
9575134 TTATTTTGATTATTTTA
1 TTATTTTGATTAGTTTA
*
9575151 TTATTTTTATTAGTTTA
1 TTATTTTGATTAGTTTA
9575168 ACTTGTTTTC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.00, G:0.06, T:0.71
Consensus pattern (17 bp):
TTATTTTGATTAGTTTA
Found at i:9575587 original size:2 final size:2
Alignment explanation
Indices: 9575580--9575621 Score: 52
Period size: 2 Copynumber: 22.0 Consensus size: 2
9575570 TTAAAAATTT
* *
9575580 TA TA TA TA TA TG TA TA TA TA TA TA TA TA TG T- TA -A TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
9575620 TA
1 TA
9575622 CATGTTAAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
1 2 0.06
2 33 0.94
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (2 bp):
TA
Found at i:9575616 original size:16 final size:16
Alignment explanation
Indices: 9575580--9575629 Score: 73
Period size: 16 Copynumber: 3.0 Consensus size: 16
9575570 TTAAAAATTT
9575580 TATATATATATGTATATA
1 TATATATATATGT-TA-A
9575598 TATATATATATGTTAA
1 TATATATATATGTTAA
*
9575614 TATATATACATGTTAA
1 TATATATATATGTTAA
9575630 ATGATTCGAT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
16 16 0.52
17 2 0.06
18 13 0.42
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (16 bp):
TATATATATATGTTAA
Found at i:9587120 original size:10 final size:9
Alignment explanation
Indices: 9587105--9587146 Score: 52
Period size: 9 Copynumber: 4.7 Consensus size: 9
9587095 CGACTGTCAG
9587105 TATTTTTTAT
1 TATTTTTT-T
9587115 TA-TTTTTT
1 TATTTTTTT
9587123 TATTTTTTCT
1 TATTTTTT-T
9587133 TA-TTTTTT
1 TATTTTTTT
9587141 TATTTT
1 TATTTT
9587147 CAATAAGTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
8 6 0.21
9 18 0.62
10 5 0.17
ACGTcount: A:0.14, C:0.02, G:0.00, T:0.83
Consensus pattern (9 bp):
TATTTTTTT
Found at i:9587123 original size:11 final size:10
Alignment explanation
Indices: 9587107--9587141 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
9587097 ACTGTCAGTA
9587107 TTTTTTATTAT
1 TTTTTTATT-T
9587118 TTTTTTATTT
1 TTTTTTATTT
*
9587128 TTTCTTATTT
1 TTTTTTATTT
9587138 TTTT
1 TTTT
9587142 ATTTTCAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.11, C:0.03, G:0.00, T:0.86
Consensus pattern (10 bp):
TTTTTTATTT
Found at i:9587128 original size:18 final size:18
Alignment explanation
Indices: 9587105--9587146 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
9587095 CGACTGTCAG
9587105 TATTTTTTATTATTTTTT
1 TATTTTTTATTATTTTTT
*
9587123 TATTTTTTCTTATTTTTT
1 TATTTTTTATTATTTTTT
9587141 TATTTT
1 TATTTT
9587147 CAATAAGTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.14, C:0.02, G:0.00, T:0.83
Consensus pattern (18 bp):
TATTTTTTATTATTTTTT
Found at i:9587677 original size:125 final size:127
Alignment explanation
Indices: 9587455--9587709 Score: 496
Period size: 125 Copynumber: 2.0 Consensus size: 127
9587445 TTCGTTTGCC
9587455 AATACGATCAGATATATTTGTATCTATTTTTATATGAATTTATTTGTTAGATTTTAATCTTTCCT
1 AATACGATCAGATATATTTGTATCTATTTTTATATGAATTTATTTGTTAGATTTTAATCTTTCCT
9587520 TGTACGATCATCATGTGATCTTAAGTTGCTAGTTTTGTTTCAAT-AAAAAATAATTAT-AGA
66 TGTACGATCATCATGTGATCTTAAGTTGCTAGTTTTGTTTCAATAAAAAAATAATTATAAGA
9587580 AATACGATCAGATATATTTGTATCTATTTTTATATGAATTTATTTGTTAGATTTTAATCTTTCCT
1 AATACGATCAGATATATTTGTATCTATTTTTATATGAATTTATTTGTTAGATTTTAATCTTTCCT
9587645 TGTACGATCATCATGTGATCTTAAGTTGCTAGTTTTGTTTCAATAAAAAAATAATTATAAGA
66 TGTACGATCATCATGTGATCTTAAGTTGCTAGTTTTGTTTCAATAAAAAAATAATTATAAGA
9587707 AAT
1 AAT
9587710 TGTCCTAATT
Statistics
Matches: 128, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
125 109 0.85
126 13 0.10
127 6 0.05
ACGTcount: A:0.33, C:0.09, G:0.12, T:0.46
Consensus pattern (127 bp):
AATACGATCAGATATATTTGTATCTATTTTTATATGAATTTATTTGTTAGATTTTAATCTTTCCT
TGTACGATCATCATGTGATCTTAAGTTGCTAGTTTTGTTTCAATAAAAAAATAATTATAAGA
Found at i:9599554 original size:50 final size:50
Alignment explanation
Indices: 9599479--9599579 Score: 202
Period size: 50 Copynumber: 2.0 Consensus size: 50
9599469 TTTGGGTTTT
9599479 AAGAAATTTTGGTTTTATGCATGGGAGTAATATTGAGGATTGTGATTAGC
1 AAGAAATTTTGGTTTTATGCATGGGAGTAATATTGAGGATTGTGATTAGC
9599529 AAGAAATTTTGGTTTTATGCATGGGAGTAATATTGAGGATTGTGATTAGC
1 AAGAAATTTTGGTTTTATGCATGGGAGTAATATTGAGGATTGTGATTAGC
9599579 A
1 A
9599580 CTTGTTATAA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.31, C:0.04, G:0.28, T:0.38
Consensus pattern (50 bp):
AAGAAATTTTGGTTTTATGCATGGGAGTAATATTGAGGATTGTGATTAGC
Found at i:9601884 original size:14 final size:14
Alignment explanation
Indices: 9601865--9601891 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
9601855 ACCCAGATAG
9601865 TCCCTCCCCAAAAA
1 TCCCTCCCCAAAAA
9601879 TCCCTCCCCAAAA
1 TCCCTCCCCAAAA
9601892 CGACTTAGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.52, G:0.00, T:0.15
Consensus pattern (14 bp):
TCCCTCCCCAAAAA
Found at i:9602708 original size:3 final size:3
Alignment explanation
Indices: 9602702--9602732 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
9602692 ATATTATTTT
9602702 TAA TAA TAA T-A TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
9602733 TATATAAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.07
3 25 0.93
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:9602982 original size:36 final size:36
Alignment explanation
Indices: 9602907--9603872 Score: 1381
Period size: 36 Copynumber: 26.8 Consensus size: 36
9602897 TGATATGTTC
** * * *
9602907 TTGCTTCACTACTCTTTTTGTGAAGGCTATGATGGCT
1 TTGCTTCACTACTC-TTCCGTGGAGGCTAAGATGACT
*
9602944 TTGCTTCACTACTCTTCCGTGGAGGCTAAGATGCCT
1 TTGCTTCACTACTCTTCCGTGGAGGCTAAGATGACT
9602980 TTGCTTCACTACTCTTCCGTGGAGGCTAAGATGACT
1 TTGCTTCACTACTCTTCCGTGGAGGCTAAGATGACT
* *
9603016 TTGCTTTACTACTCTTCCTTGGAGGCTAAGATGGA-T
1 TTGCTTCACTACTCTTCCGTGGAGGCTAAGAT-GACT
*
9603052 TTGCTTCACTACTCTTCCGTGGAGGCTAAAATGACT
1 TTGCTTCACTACTCTTCCGTGGAGGCTAAGATGACT
* * * *
9603088 TTGTTTCACTACTATTCCGTAGAGGCTAAAATGACT
1 TTGCTTCACTACTCTTCCGTGGAGGCTAAGATGACT
* *
9603124 TTGTTTCACTACTCTTCCGTGGAGGCTAAAATGACT
1 TTGCTTCACTACTCTTCCGTGGAGGCTAAGATGACT
* * **
9603160 TTGCTTCACTACTATTTCGTAAAGGCTAAGATGGA-T
1 TTGCTTCACTACTCTTCCGTGGAGGCTAAGAT-GACT
* * **
9603196 TTACTTTACTACTCTTATGTGGAGGCTAAGATGACT
1 TTGCTTCACTACTCTTCCGTGGAGGCTAAGATGACT
9603232 TTGCTTCACTACTCTTCCGTGGAGGCTAAGATGACT
1 TTGCTTCACTACTCTTCCGTGGAGGCTAAGATGACT
9603268 TTGCTTCACTACTCTTCCGTGGAGGCTAAGATGACT
1 TTGCTTCACTACTCTTCCGTGGAGGCTAAGATGACT
9603304 TTGCTTCACTACTCTTCCGTGGAGGCTAAGATGACT
1 TTGCTTCACTACTCTTCCGTGGAGGCTAAGATGACT
* * *
9603340 TTTCTTCACTACTCTTCTGTGAAGGCTAAGATGACT
1 TTGCTTCACTACTCTTCCGTGGAGGCTAAGATGACT
* * * *
9603376 TTGCTTCACTACTATTTCGTGAAGGCTAAGATGAAT
1 TTGCTTCACTACTCTTCCGTGGAGGCTAAGATGACT
*
9603412 TTGCTTCACTACTCTTCCGTGAAGGCTAAGATGACT
1 TTGCTTCACTACTCTTCCGTGGAGGCTAAGATGACT
* *
9603448 TTGCTTCACTACTCTTCTGTGGAAGCTAAGATGGA-T
1 TTGCTTCACTACTCTTCCGTGGAGGCTAAGAT-GACT
9603484 TTGCTTCACTACTCTTCCGTGGAGGCTAAGATGGA-T
1 TTGCTTCACTACTCTTCCGTGGAGGCTAAGAT-GACT
9603520 TTGCTTCACTACTCTTCCGTGGAGGCTAAGATGGA-T
1 TTGCTTCACTACTCTTCCGTGGAGGCTAAGAT-GACT
9603556 TTGCTTCACTACTCTTCCGTGGAGGCTAAGATGACT
1 TTGCTTCACTACTCTTCCGTGGAGGCTAAGATGACT
* * *
9603592 TTGCTTCACTACTCTTTCGTGAACGCTAAGATAGA-T
1 TTGCTTCACTACTCTTCCGTGGAGGCTAAGAT-GACT
*
9603628 TTGATTCACTACTCTTCCGTGGAGGCTAAGATGACT
1 TTGCTTCACTACTCTTCCGTGGAGGCTAAGATGACT
*
9603664 TTGCTTCACTACTCTTCCTTGGAGGCTAAGATGACT
1 TTGCTTCACTACTCTTCCGTGGAGGCTAAGATGACT
*
9603700 TTGCTTCACTACTCTTCCGTGGAGGCTAATATGACT
1 TTGCTTCACTACTCTTCCGTGGAGGCTAAGATGACT
* *
9603736 TTGCTTCACTACTTTTCCATGGAGGCTAAGATGGA-T
1 TTGCTTCACTACTCTTCCGTGGAGGCTAAGAT-GACT
* **
9603772 TTGCTTCACTACTCTTCCGTGAACTCTAAGATGGA-T
1 TTGCTTCACTACTCTTCCGTGGAGGCTAAGAT-GACT
*
9603808 TTGCTTCACTGCTCTTCCGTGGAGGCTAAGATGACT
1 TTGCTTCACTACTCTTCCGTGGAGGCTAAGATGACT
*
9603844 TTGCTTCACTACTCTTACGTGGAGGCTAA
1 TTGCTTCACTACTCTTCCGTGGAGGCTAA
9603873 ATTTGAAATA
Statistics
Matches: 845, Mismatches: 74, Indels: 21
0.90 0.08 0.02
Matches are distributed among these distances:
35 10 0.01
36 811 0.96
37 24 0.03
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.35
Consensus pattern (36 bp):
TTGCTTCACTACTCTTCCGTGGAGGCTAAGATGACT
Found at i:9603904 original size:47 final size:47
Alignment explanation
Indices: 9603850--9603958 Score: 164
Period size: 47 Copynumber: 2.3 Consensus size: 47
9603840 GACTTTGCTT
* * * * *
9603850 CACTACTCTTACGTGGAGGCTAAATTTGAAATAAGAAGAATTTGTTC
1 CACTACTCTTCCGTGGAGACCAAATCTGAAATAAGAAGAATTCGTTC
*
9603897 CACTACTCTTCCGTAGAGACCAAATCTGAAATAAGAAGAATTCGTTC
1 CACTACTCTTCCGTGGAGACCAAATCTGAAATAAGAAGAATTCGTTC
9603944 CACTACTCTTCCGTG
1 CACTACTCTTCCGTG
9603959 AAGATTAGAC
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 55 1.00
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (47 bp):
CACTACTCTTCCGTGGAGACCAAATCTGAAATAAGAAGAATTCGTTC
Found at i:9604166 original size:61 final size:62
Alignment explanation
Indices: 9604101--9604217 Score: 155
Period size: 62 Copynumber: 1.9 Consensus size: 62
9604091 TCCTCTGGGG
* * * *
9604101 AATCAGAAATAATATATG-TGACTTCTCTTCACGAGGAAGTCAAAAATTGACTCTACTAGGA
1 AATCAAAAATAATAAAGGTTGACTTCTCTTCACGAAGAAGTCAAAAATTGACTCTACTAGGA
* ** *
9604162 AATCAAAAATAATAAAGGTTGACTTCTTTTCGTGAAGAAGTCAAAGATTGACTCTA
1 AATCAAAAATAATAAAGGTTGACTTCTCTTCACGAAGAAGTCAAAAATTGACTCTA
9604218 TTGGGGAGTC
Statistics
Matches: 47, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
61 15 0.32
62 32 0.68
ACGTcount: A:0.40, C:0.15, G:0.16, T:0.29
Consensus pattern (62 bp):
AATCAAAAATAATAAAGGTTGACTTCTCTTCACGAAGAAGTCAAAAATTGACTCTACTAGGA
Found at i:9605113 original size:171 final size:171
Alignment explanation
Indices: 9604808--9605131 Score: 422
Period size: 171 Copynumber: 1.9 Consensus size: 171
9604798 TGCTTCATAA
* * * *
9604808 AACATTTGACAACACATTCATTCTTTCTTGTGGCTACTACCCAGATTTTTCAACCAGAGAAGCTC
1 AACATTTGACAACACATTCATCCTTTCCTATAGCTACTACCCAGATTTTTCAACCAGAGAAGCTC
* * ** *
9604873 TTTGCATCATTTTCAAAGCTTTTGTATGATGTCACAAAGATACTTAATAACAAAACTCAGTGTGA
66 TTTGCATCATGTTCAAAGCTTTTGTATGATGTCACAAAGACACCAAAGAACAAAACTCAGTGTGA
9604938 ATACAAATGGGATACTTTGGCTTGTCATCATCATATCAGAG
131 ATACAAATGGGATACTTTGGCTTGTCATCATCATATCAGAG
* *
9604979 AACATTTGACAACACATTCATCCTTTCCTATAGCTACTGCCCAGATTTTTCAACCAGGGAAGCTC
1 AACATTTGACAACACATTCATCCTTTCCTATAGCTACTACCCAGATTTTTCAACCAGAGAAGCTC
* * * * * *
9605044 TTTGTAT-AGTGTTCAGAGCTTTTGTATAGGAT-T-ATAAGGACACCAAAGAACAAAGCTCAAT-
66 TTTGCATCA-TGTTCAAAGCTTTTGTAT--GATGTCACAAAGACACCAAAGAACAAAACTCAGTG
*
9605105 TGGAATACAAGTGGGATACTTTGGCTT
128 T-GAATACAAATGGGATACTTTGGCTT
9605132 TCTAGCATCA
Statistics
Matches: 131, Mismatches: 18, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
170 2 0.02
171 125 0.95
172 1 0.01
173 3 0.02
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (171 bp):
AACATTTGACAACACATTCATCCTTTCCTATAGCTACTACCCAGATTTTTCAACCAGAGAAGCTC
TTTGCATCATGTTCAAAGCTTTTGTATGATGTCACAAAGACACCAAAGAACAAAACTCAGTGTGA
ATACAAATGGGATACTTTGGCTTGTCATCATCATATCAGAG
Found at i:9612349 original size:22 final size:23
Alignment explanation
Indices: 9612322--9612370 Score: 66
Period size: 22 Copynumber: 2.2 Consensus size: 23
9612312 AAACGGTCGA
9612322 AAAACGTACCA-AAAGGTAGAA-G
1 AAAACGTACCATAAAGGTA-AAGG
*
9612344 AAAACGTGCCATAAAGGTAAAGG
1 AAAACGTACCATAAAGGTAAAGG
9612367 AAAA
1 AAAA
9612371 TGTGTCATAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 12 0.50
23 12 0.50
ACGTcount: A:0.55, C:0.12, G:0.22, T:0.10
Consensus pattern (23 bp):
AAAACGTACCATAAAGGTAAAGG
Found at i:9612359 original size:23 final size:24
Alignment explanation
Indices: 9612322--9612387 Score: 75
Period size: 23 Copynumber: 2.9 Consensus size: 24
9612312 AAACGGTCGA
*
9612322 AAAACGTACCA-AAAGGTAGAA-G
1 AAAACGTGCCATAAAGGTAGAAGG
9612344 AAAACGTGCCATAAAGGTA-AAGG
1 AAAACGTGCCATAAAGGTAGAAGG
* * *
9612367 AAAATGTGTCATACAGGTAGA
1 AAAACGTGCCATAAAGGTAGA
9612388 CTTTTTGAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
22 12 0.32
23 24 0.65
24 1 0.03
ACGTcount: A:0.48, C:0.12, G:0.24, T:0.15
Consensus pattern (24 bp):
AAAACGTGCCATAAAGGTAGAAGG
Found at i:9613791 original size:2 final size:2
Alignment explanation
Indices: 9613784--9613830 Score: 69
Period size: 2 Copynumber: 24.0 Consensus size: 2
9613774 TTTTATAGAA
* *
9613784 AT AT AT AT AT AT AT AT AT AT AT CT AT AT AT AT AT AG AT A- AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9613825 AT AT AT
1 AT AT AT
9613831 TATGATGTAT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
1 1 0.03
2 39 0.98
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (2 bp):
AT
Found at i:9617222 original size:23 final size:23
Alignment explanation
Indices: 9617192--9617244 Score: 106
Period size: 23 Copynumber: 2.3 Consensus size: 23
9617182 TAGTATTGAC
9617192 TGATTCAATAAAACAGTGCTGAA
1 TGATTCAATAAAACAGTGCTGAA
9617215 TGATTCAATAAAACAGTGCTGAA
1 TGATTCAATAAAACAGTGCTGAA
9617238 TGATTCA
1 TGATTCA
9617245 GCACAAAAGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.42, C:0.13, G:0.17, T:0.28
Consensus pattern (23 bp):
TGATTCAATAAAACAGTGCTGAA
Found at i:9620280 original size:24 final size:25
Alignment explanation
Indices: 9620234--9620280 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
9620224 TGTGTGTGAG
*
9620234 TTATTAATTTAAACTTTACTATATA
1 TTATTAATCTAAACTTTACTATATA
*
9620259 TTATTTATCTAAA-TTTACTATA
1 TTATTAATCTAAACTTTACTATA
9620281 ATTTAATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 9 0.45
25 11 0.55
ACGTcount: A:0.38, C:0.09, G:0.00, T:0.53
Consensus pattern (25 bp):
TTATTAATCTAAACTTTACTATATA
Found at i:9622063 original size:37 final size:37
Alignment explanation
Indices: 9622007--9622110 Score: 127
Period size: 37 Copynumber: 2.8 Consensus size: 37
9621997 ATTTTCGTCA
* *
9622007 TACTAGGATTCAAACTCCTAAAAATAGGATATAATTT
1 TACTAGGATTCAAACTCCTAAAAATAGGATAGAATTC
* * * *
9622044 TGCTAGGATTCAAAATCCTAAAAATATGATAGAGTTC
1 TACTAGGATTCAAACTCCTAAAAATAGGATAGAATTC
* * *
9622081 TACTATGATTTAAACTCCTAAAGATAGGAT
1 TACTAGGATTCAAACTCCTAAAAATAGGAT
9622111 CCACAAGCAC
Statistics
Matches: 55, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
37 55 1.00
ACGTcount: A:0.41, C:0.13, G:0.13, T:0.32
Consensus pattern (37 bp):
TACTAGGATTCAAACTCCTAAAAATAGGATAGAATTC
Found at i:9622961 original size:4 final size:4
Alignment explanation
Indices: 9622948--9622998 Score: 68
Period size: 4 Copynumber: 12.2 Consensus size: 4
9622938 TATATATTAA
9622948 TATT TCATT TATT TATT TATT TATT TATT TATT TATT CT-TT TATTT TATT
1 TATT T-ATT TATT TATT TATT TATT TATT TATT TATT -TATT TA-TT TATT
9622998 T
1 T
9622999 TGTACTTATT
Statistics
Matches: 43, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
3 1 0.02
4 33 0.77
5 9 0.21
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.75
Consensus pattern (4 bp):
TATT
Found at i:9626063 original size:14 final size:13
Alignment explanation
Indices: 9626046--9626106 Score: 50
Period size: 14 Copynumber: 4.5 Consensus size: 13
9626036 AACAAAAGGC
*
9626046 AAAAAGAAAAAGA
1 AAAAAAAAAAAGA
* *
9626059 AAAAAGCAAAAAGG
1 AAAAA-AAAAAAGA
*
9626073 AAAAAACAAAAGA
1 AAAAAAAAAAAGA
*
9626086 AACAAAAAGAAAGA
1 AA-AAAAAAAAAGA
9626100 ACAAAAA
1 A-AAAAA
9626107 TCGAAAGAAA
Statistics
Matches: 38, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
13 12 0.32
14 25 0.66
15 1 0.03
ACGTcount: A:0.80, C:0.07, G:0.13, T:0.00
Consensus pattern (13 bp):
AAAAAAAAAAAGA
Found at i:9626067 original size:20 final size:20
Alignment explanation
Indices: 9626034--9626097 Score: 65
Period size: 22 Copynumber: 3.0 Consensus size: 20
9626024 AGATTCAACC
9626034 AGAACAAAAGGCAAAAAGAAAA
1 AGAA-AAAA-GCAAAAAGAAAA
9626056 AGAAAAAAGCAAAAAGGAAAAA
1 AGAAAAAAGCAAAAA-G-AAAA
* *
9626078 ACAAAAGAAACAAAAAGAAA
1 AGAAAA-AAGCAAAAAGAAA
9626098 GAACAAAAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
20 7 0.19
21 8 0.22
22 14 0.38
23 8 0.22
ACGTcount: A:0.77, C:0.08, G:0.16, T:0.00
Consensus pattern (20 bp):
AGAAAAAAGCAAAAAGAAAA
Found at i:9626092 original size:15 final size:15
Alignment explanation
Indices: 9626074--9626116 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
9626064 GCAAAAAGGA
*
9626074 AAAAACAAAAGAAAC
1 AAAAACGAAAGAAAC
9626089 AAAAA-GAAAG-AAC
1 AAAAACGAAAGAAAC
9626102 AAAAATCGAAAGAAA
1 AAAAA-CGAAAGAAA
9626117 AGGGACAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
13 8 0.33
14 4 0.17
15 10 0.42
16 2 0.08
ACGTcount: A:0.77, C:0.09, G:0.12, T:0.02
Consensus pattern (15 bp):
AAAAACGAAAGAAAC
Done.