Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001551.1 Hibiscus syriacus cultivar Beakdansim tig00003053_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62511

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1617--1788
60
2.9
59
80
12
174
33
22
4
39
1.75
1929--2093
60
2.8
60
82
2
199
46
4
15
33
1.65
2858--3055
27
7.3
27
92
0
279
18
22
45
13
1.84
3624--3817
94
2.1
95
98
1
372
32
13
21
32
1.92
4392--4424
15
2.1
16
88
5
50
39
3
0
57
1.14
4597--4655
31
1.9
30
83
10
75
47
18
5
28
1.70
6708--6738
6
5.2
6
92
0
53
32
16
3
48
1.62
7061--7117
21
2.7
21
75
0
60
35
24
17
22
1.95
11422--11469
6
8.0
6
95
0
87
31
16
2
50
1.57
12407--13071
331
2.0
331
93
0
1141
30
21
9
37
1.86
14569--14602
16
2.2
16
89
5
52
55
5
14
23
1.61
14770--14818
16
3.1
16
84
0
62
32
4
30
32
1.77
15014--15043
4
7.5
4
100
0
60
76
0
0
23
0.78
14881--15169
146
2.0
146
87
4
422
50
15
13
20
1.77
15038--15291
122
2.1
123
92
1
422
47
15
16
20
1.82
20549--20607
30
2.0
29
86
3
82
37
6
10
45
1.65
20931--20969
21
1.9
21
94
5
71
38
38
10
12
1.78
22112--22159
19
2.5
20
82
3
62
52
6
12
29
1.63
23401--23459
30
2.0
30
93
3
102
35
6
13
44
1.71
23539--23594
21
2.7
21
94
0
94
23
33
17
25
1.96
24987--25034
19
2.5
20
82
3
62
52
6
12
29
1.63
26277--26335
30
2.0
30
93
3
102
35
6
13
44
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26666--26705
20
1.9
22
90
10
66
37
35
10
17
1.83
29914--30622
91
7.8
91
84
5
811
38
15
22
23
1.92
30564--30656
39
2.4
39
92
3
152
49
11
19
19
1.78
32271--32979
91
7.8
91
84
5
827
38
15
22
23
1.92
32921--33013
39
2.4
39
90
3
143
48
11
20
19
1.80
35056--35113
26
2.2
26
100
0
116
31
17
12
39
1.86
42221--42278
30
2.0
29
82
3
71
37
18
6
36
1.78
48982--49012
11
2.8
11
100
0
62
70
0
9
19
1.14
48967--49043
18
3.7
21
74
22
65
71
0
16
11
1.14
48967--49023
22
2.5
22
70
13
53
71
0
15
12
1.13
49007--49073
18
3.9
18
73
23
65
77
0
17
4
0.93
49007--49103
19
5.3
18
75
18
78
75
0
18
6
1.01
48983--49124
20
6.9
20
71
10
90
74
0
16
8
1.05
49007--49112
41
2.6
41
81
14
112
75
0
18
5
0.99
48988--49124
70
1.9
70
81
12
165
75
0
16
8
1.03
50619--50652
16
2.2
15
94
5
59
55
5
11
26
1.58
50820--50861
16
2.6
16
77
7
50
38
4
23
33
1.76
51586--51612
2
13.5
2
100
0
54
51
48
0
0
1.00
56671--56714
22
2.0
22
91
8
72
18
25
11
45
1.82
57208--57288
34
2.3
35
80
16
89
32
2
0
65
1.06
57246--57300
27
1.9
30
82
10
71
38
0
1
60
1.08
59334--59361
2
14.0
2
100
0
56
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61411--61608
60
3.2
60
89
8
310
38
20
12
28
1.88

Tables:   1

The End!