genome.fa.s1553.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001553.1 Hibiscus syriacus cultivar Beakdansim tig00003055_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79532

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
342--413	34	2.1	35	86	2	101	33	27	26	12	1.92
494--580	24	3.7	23	80	4	93	37	17	17	27	1.92
2809--2896	24	3.7	24	84	6	115	40	18	12	28	1.87
5327--5384	8	6.9	8	78	11	55	29	25	31	13	1.94
7423--7498	24	3.2	24	84	3	73	46	19	13	21	1.84
7440--7554	24	4.8	24	82	6	144	40	18	15	25	1.90
9907--9936	13	2.3	13	94	0	51	16	10	50	23	1.75
9950--9993	21	2.1	21	91	8	72	43	31	11	13	1.80
11716--11765	8	6.5	8	78	21	54	22	26	36	16	1.94
11741--11770	13	2.3	13	94	0	51	16	23	43	16	1.87
13754--13826	35	2.1	35	89	0	110	34	28	27	9	1.88
13908--13987	24	3.4	23	78	11	90	38	17	15	28	1.90
34527--34575	13	3.8	13	91	2	82	18	46	22	12	1.82
34505--34585	17	5.2	17	82	11	79	19	44	22	13	1.86
34575--34620	7	6.7	7	95	5	85	15	30	30	23	1.95
41790--41838	13	3.8	13	91	2	82	18	46	22	12	1.82
41768--41848	17	5.2	17	82	11	79	19	44	22	13	1.86
41838--41875	7	5.4	7	100	0	76	15	28	28	26	1.96
50394--50481	24	3.7	24	78	0	86	46	15	11	26	1.80
55078--55134	12	4.8	12	74	8	53	50	15	14	19	1.77
55078--55133	24	2.3	24	84	0	67	51	16	14	17	1.76
59790--59855	24	2.8	24	79	4	71	53	15	12	19	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65848--65900	24	2.2	24	83	3	63	11	15	15	58	1.63
65920--65944	11	2.3	11	100	0	50	16	36	8	40	1.77
66827--66883	24	2.4	24	90	0	96	19	10	36	33	1.86
69671--69696	6	4.3	6	100	0	52	50	0	34	15	1.45
78342--78402	29	2.1	30	90	3	97	65	0	21	13	1.26
78344--78407	16	4.2	15	80	11	60	64	0	21	14	1.29
78611--78648	14	2.7	14	84	11	51	0	10	7	81	0.87
78608--78645	18	2.1	18	85	9	51	0	13	5	81	0.85
78873--78898	10	2.6	10	100	0	52	50	0	30	19	1.48

Tables:   1

The End!