Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001555.1 Hibiscus syriacus cultivar Beakdansim tig00003074_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55889

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12783--12817
16
2.2
16
89
0
52
65
2
2
28
1.21
12806--12845
21
1.9
21
84
0
53
62
2
12
22
1.42
14890--14923
17
1.9
18
88
5
52
50
26
8
14
1.72
16177--16272
43
2.2
44
81
10
117
44
0
7
47
1.30
27849--27892
22
2.0
22
82
8
54
36
11
11
40
1.77
33551--33580
15
2.0
15
93
0
51
53
10
0
36
1.35
34056--34107
14
3.7
14
77
10
52
23
15
32
28
1.95
37850--38226
200
1.9
200
91
0
619
27
11
18
42
1.84
38327--38368
3
14.7
3
80
9
52
33
0
0
66
0.92
38327--38368
20
2.1
20
90
0
66
33
0
0
66
0.92
38337--38369
17
1.9
17
93
0
57
36
0
0
63
0.95
45230--45314
22
4.0
21
73
16
59
72
0
22
4
1.02
45248--45306
20
2.9
19
81
16
66
76
0
20
3
0.93
45268--45314
17
2.7
18
87
9
62
78
0
19
2
0.85
45244--45315
11
6.8
10
76
7
54
76
0
19
4
0.95
45201--45304
8
13.0
8
68
16
56
69
0
26
2
1.09
47155--47886
38
19.2
38
84
3
851
24
18
17
39
1.92
47852--48118
45
6.1
45
77
4
251
24
16
18
40
1.91
47930--48105
89
2.0
90
85
1
237
23
17
18
40
1.91
47869--48115
134
1.9
130
84
3
332
24
16
19
39
1.92
47985--48205
50
4.7
48
80
11
203
24
19
19
36
1.94
48762--49362
134
4.5
134
86
2
773
30
18
19
31
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49556--49587
16
2.1
15
94
5
55
28
0
0
71
0.86
54039--54212
87
2.0
88
85
1
233
48
12
16
22
1.78

Tables:   1

The End!