genome.fa.s1556.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001556.1 Hibiscus syriacus cultivar Beakdansim tig00003076_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53960

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3755--3780	2	13.0	2	100	0	52	50	0	0	50	1.00
4312--4431	59	2.1	56	83	7	143	34	15	17	33	1.91
6193--6226	18	1.9	17	88	5	50	17	14	0	67	1.23
10174--10230	8	7.1	8	86	7	80	84	0	15	0	0.63
10154--10225	4	18.0	4	77	5	65	77	0	22	0	0.76
10153--10221	12	5.7	12	84	3	84	78	0	21	0	0.76
10174--10230	20	2.9	19	87	10	87	84	0	15	0	0.63
10955--11036	28	2.9	28	80	10	87	39	31	3	25	1.73
12208--12679	55	8.8	55	82	5	450	31	9	17	41	1.82
12208--12568	109	3.3	109	87	1	508	32	9	17	41	1.80
12208--12564	164	2.2	164	86	2	475	32	9	17	41	1.81
12208--12940	55	13.7	53	81	7	441	32	9	18	40	1.82
12572--12940	105	3.4	105	85	4	463	32	8	19	39	1.83
12572--12940	158	2.3	162	82	5	453	32	8	19	39	1.83
12963--13017	20	2.6	22	77	11	62	21	20	21	36	1.95
13183--13292	42	2.7	41	73	5	105	28	20	20	30	1.98
13812--14177	139	2.6	139	92	1	601	36	17	21	24	1.94
14108--14171	17	3.3	19	67	20	51	40	12	23	23	1.88
16099--16136	18	2.1	18	90	9	60	15	15	5	63	1.48
27880--27999	35	3.3	36	89	5	181	43	20	5	31	1.73
27931--27991	21	3.2	21	65	29	64	42	21	4	31	1.74
29023--29064	21	2.0	21	86	9	59	26	0	4	69	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29419--29538	62	1.9	62	88	6	181	35	16	8	40	1.79
33243--33278	2	18.0	2	100	0	72	50	0	0	50	1.00
36805--36831	2	13.5	2	100	0	54	48	0	0	51	1.00
39511--39558	20	2.5	20	89	3	71	52	4	12	31	1.58
43859--43926	22	3.1	22	79	10	68	27	17	14	39	1.89
43859--43937	22	3.6	22	78	8	63	27	18	16	36	1.93
46504--46574	31	2.3	31	85	0	88	32	22	7	38	1.81
46517--46581	31	2.1	30	88	2	94	26	27	10	35	1.90
53729--53773	3	14.0	3	82	13	54	31	2	2	64	1.18
53727--53781	19	3.0	18	79	17	60	29	3	3	63	1.28

Tables:   1

The End!