Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001557.1 Hibiscus syriacus cultivar Beakdansim tig00003078_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71938

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2032--2072
3
14.7
3
80
14
52
31
0
0
68
0.90
2042--2073
16
1.9
17
93
6
57
34
0
0
65
0.93
8817--8917
7
13.1
7
69
19
51
69
0
26
2
1.09
8845--8928
22
4.0
21
75
14
66
72
0
22
4
1.03
8827--8928
16
6.3
17
72
12
63
70
0
24
3
1.10
8890--8930
10
4.3
10
79
20
52
78
0
19
2
0.87
8858--8929
21
3.4
22
76
16
73
75
0
19
5
1.00
10777--11503
38
19.1
38
83
4
818
24
18
17
39
1.92
11469--11735
45
6.1
45
77
4
251
24
16
18
40
1.91
11547--11722
89
2.0
90
85
1
237
23
17
18
40
1.91
11486--11732
134
1.9
130
84
3
332
24
16
19
39
1.92
11602--11822
50
4.7
48
80
11
203
24
19
19
36
1.94
12377--12974
133
4.5
132
85
5
710
30
18
19
32
1.96
12375--12974
267
2.2
267
84
4
784
30
18
19
32
1.96
13166--13198
17
2.0
16
94
5
57
27
0
0
72
0.85
13168--13210
17
2.7
16
82
10
52
32
0
0
67
0.91
13166--13207
20
2.1
20
86
0
57
30
0
0
69
0.89
17641--17813
87
2.0
87
84
0
229
48
12
16
23
1.79
24950--25019
27
2.7
27
84
4
81
30
4
4
61
1.34
28263--28325
31
2.2
28
78
15
76
30
30
22
17
1.96
28630--28662
17
1.9
17
100
0
66
18
18
36
27
1.94
30893--30939
24
2.0
23
83
4
58
38
10
2
48
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30983--31040
24
2.4
24
97
0
107
22
32
3
41
1.71
33609--33636
2
14.0
2
100
0
56
50
0
0
50
1.00
34327--34351
11
2.3
11
100
0
50
48
12
16
24
1.79
35852--36008
74
2.1
74
96
1
287
31
15
15
36
1.90
54365--54897
44
12.0
44
86
1
647
40
11
21
26
1.88
54365--54860
219
2.3
220
85
1
690
40
11
21
26
1.87
58159--58242
27
3.2
27
85
8
102
33
28
1
36
1.65
71076--71143
4
15.8
4
74
19
57
66
0
0
33
0.92
71078--71142
10
6.9
9
93
6
87
64
0
0
35
0.94
71078--71167
36
2.5
35
80
8
101
64
1
0
34
1.01
71240--71500
35
7.4
34
72
13
174
42
11
4
42
1.61
71239--71500
69
3.7
66
75
15
170
41
11
4
42
1.61
71393--71476
38
2.2
38
87
2
125
41
15
4
38
1.68
71467--71493
13
2.1
13
100
0
54
51
7
0
40
1.30
71490--71519
11
2.6
11
94
5
51
46
0
0
53
1.00

Tables:   1

The End!