genome.fa.s1558.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001558.1 Hibiscus syriacus cultivar Beakdansim tig00003080_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  129621

Tables:   1   

This is table  1  of  1  ( 81 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9601--9700	30	3.3	30	91	0	146	31	22	18	29	1.97
10601--10652	16	3.2	16	70	20	54	28	32	19	19	1.96
16050--16255	75	2.7	75	79	5	220	22	23	30	23	1.99
16860--16903	17	2.6	17	78	7	54	59	27	0	13	1.35
18722--18803	21	3.9	21	78	7	76	14	23	36	25	1.93
24558--24751	74	2.6	74	85	2	246	21	25	30	23	1.99
32500--32569	32	2.2	32	89	0	104	31	31	0	37	1.58
34377--34431	26	2.1	26	100	0	110	34	7	3	54	1.46
34384--34439	26	2.2	26	90	0	85	32	10	1	55	1.45
35566--35621	20	2.8	21	86	7	82	35	16	17	30	1.92
44395--44433	17	2.3	17	95	0	69	48	0	7	43	1.31
45165--45218	23	2.3	23	87	6	83	31	25	18	24	1.97
45323--45364	20	2.1	20	90	0	66	61	16	7	14	1.53
45330--45371	20	2.1	20	86	0	57	64	16	2	16	1.40
47716--48130	31	13.4	31	89	1	535	47	22	3	26	1.68
48129--48163	2	17.5	2	87	0	52	54	0	0	45	0.99
48129--48163	12	2.9	12	95	0	61	54	0	0	45	0.99
48385--48584	6	33.7	6	73	7	95	12	3	40	44	1.57
48374--48453	12	6.8	12	78	7	56	6	6	41	46	1.54
48379--48429	18	2.9	18	91	2	77	1	7	47	43	1.43
48514--48605	13	7.6	12	70	8	53	18	0	39	42	1.50
48545--48584	13	3.1	13	92	7	64	7	0	45	47	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48549--48590	19	2.2	19	91	0	66	9	0	45	45	1.36
48415--48605	6	32.3	6	68	19	55	15	1	38	43	1.56
49115--49169	28	2.0	28	82	3	67	61	1	20	16	1.43
49263--49400	62	2.2	61	83	11	174	36	10	6	47	1.63
49494--49818	18	18.2	18	65	20	130	42	6	7	43	1.59
49505--49816	33	9.8	33	69	17	187	42	7	7	43	1.60
49506--49677	58	3.0	58	91	1	274	41	7	8	42	1.63
49661--49814	52	3.0	52	91	4	249	42	6	6	44	1.56
49621--49713	34	2.8	34	85	1	107	44	6	7	41	1.58
49738--49786	19	2.5	20	73	6	55	40	6	8	44	1.59
49790--50204	2	199.0	2	64	21	99	44	4	6	44	1.49
49832--49993	27	6.0	25	73	18	98	45	3	7	43	1.47
49877--49952	23	3.1	24	84	14	102	46	0	6	47	1.28
49885--50328	41	11.3	37	67	21	112	46	4	6	42	1.48
49885--49985	23	4.2	24	82	11	100	48	0	6	43	1.36
50006--50091	41	2.1	41	85	8	113	44	8	5	41	1.58
50025--50242	18	11.3	20	73	20	121	44	6	6	42	1.55
50087--50268	18	10.2	17	72	22	83	46	4	6	42	1.50
50230--50408	22	7.9	22	65	22	66	50	5	3	40	1.42
50230--50330	29	3.7	27	74	21	104	53	0	5	39	1.32
50245--50291	25	2.0	24	87	8	69	53	2	6	38	1.39
50231--50304	20	3.5	20	76	16	76	54	1	5	39	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50622--51325	216	3.3	215	93	1	1194	28	12	8	51	1.67
54945--54975	15	2.1	14	94	5	53	58	0	0	41	0.98
55126--55151	2	13.0	2	100	0	52	50	0	0	50	1.00
57299--57343	19	2.4	19	96	0	81	37	4	15	42	1.67
62911--63049	71	2.0	71	86	0	197	26	15	17	40	1.89
65822--65866	23	2.0	23	86	0	63	24	13	40	22	1.90
65868--65913	23	2.0	23	86	0	65	32	28	19	19	1.96
67275--67337	18	3.1	22	60	21	55	50	15	9	23	1.73
67455--67612	34	4.8	32	68	21	105	48	6	3	41	1.46
67492--67611	63	1.9	63	86	6	172	48	6	4	40	1.49
68509--68610	24	4.2	25	70	9	77	44	17	19	18	1.87
76537--76592	20	2.8	20	78	10	60	30	14	30	25	1.95
76668--76734	20	3.3	20	81	4	73	28	17	29	23	1.97
85058--85096	17	2.3	17	100	0	78	46	25	10	17	1.80
86471--86498	2	14.0	2	100	0	56	50	0	0	50	1.00
89728--89852	21	5.8	21	73	14	60	32	24	19	24	1.97
89722--89805	23	3.7	23	77	14	95	28	25	22	23	1.99
96478--96577	23	4.6	23	71	18	72	29	27	21	23	1.99
98783--99464	95	7.2	95	85	2	827	31	18	18	31	1.95
99637--99683	24	2.0	24	91	0	76	44	34	0	21	1.52
104691--104758	3	22.0	3	83	3	73	57	1	1	39	1.17
104996--105583	114	5.2	113	89	1	840	28	18	14	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104996--105759	227	3.4	227	89	3	1119	28	18	15	37	1.91
105364--105756	214	1.8	217	89	2	623	29	17	16	36	1.92
105476--105756	113	2.6	103	86	7	359	29	16	17	36	1.92
106483--106719	92	2.6	92	95	0	438	36	23	14	24	1.93
108062--108112	8	6.5	8	84	8	61	0	15	0	84	0.63
108063--108105	9	4.8	9	94	5	70	0	11	0	88	0.52
115373--115404	15	2.1	15	94	0	55	46	3	18	31	1.65
118161--118185	9	2.8	9	100	0	50	52	0	0	48	1.00
119396--119437	13	3.3	13	78	15	52	61	0	4	33	1.17
120813--120843	3	10.0	3	93	6	53	32	0	0	67	0.91
120813--120844	13	2.5	13	95	5	57	31	0	0	68	0.90
120814--120848	16	2.2	16	94	0	61	28	0	0	71	0.86
120847--120922	3	25.0	3	85	5	73	56	0	1	42	1.07
121982--122022	21	2.0	21	85	0	55	39	19	2	39	1.65
126128--126166	14	2.7	14	85	14	53	33	0	0	66	0.92

Tables:   1

The End!