genome.fa.s1559.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001559.1 Hibiscus syriacus cultivar Beakdansim tig00003081_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  120951

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10461--10490	9	3.3	9	90	0	51	86	13	0	0	0.57
10453--10510	15	3.7	15	81	6	55	82	6	8	1	0.90
11800--12985	51	22.9	51	82	6	1117	32	18	25	24	1.97
11797--12985	54	22.9	54	79	11	992	32	18	25	24	1.97
11800--13026	210	5.9	212	82	9	1281	32	18	24	24	1.97
12994--13180	55	3.4	55	83	3	236	34	13	20	30	1.92
12938--13181	110	2.2	110	81	6	289	34	15	21	28	1.94
15453--15493	20	2.0	20	100	0	82	24	9	26	39	1.86
20056--20083	2	14.0	2	100	0	56	50	0	0	50	1.00
27337--27383	15	3.1	15	71	17	51	21	17	6	55	1.64
27333--27391	17	3.6	17	71	13	61	20	16	6	55	1.63
28253--28332	28	2.8	28	81	11	74	42	5	8	43	1.57
28284--28338	28	1.9	29	88	3	85	38	7	14	40	1.74
28290--28349	28	2.1	28	84	6	77	38	10	11	40	1.75
28476--28504	14	2.1	14	100	0	58	31	20	6	41	1.79
28436--28532	45	2.2	44	83	7	117	35	16	7	41	1.76
29254--29301	5	9.8	5	82	13	55	75	0	6	18	1.01
29258--29340	25	3.3	25	76	6	71	71	1	9	18	1.20
29320--29467	79	1.9	78	83	8	192	70	2	9	17	1.26
29712--29757	12	3.9	11	83	11	56	78	2	4	15	1.01
30809--30885	20	3.7	19	81	13	82	72	1	3	22	1.08
30822--30899	13	6.2	12	77	18	70	70	1	5	23	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30822--30899	4	18.8	4	77	12	70	70	1	5	23	1.14
30822--30886	9	7.1	9	74	22	64	73	1	3	21	1.05
30822--30903	30	2.6	31	83	12	89	70	1	6	21	1.16
31009--31107	13	7.9	13	67	18	59	50	8	1	40	1.39
30909--31245	37	8.9	38	79	11	270	46	6	2	43	1.45
34017--34069	3	17.7	3	100	0	106	66	0	0	33	0.92
37945--37969	3	8.3	3	100	0	50	0	32	0	68	0.90
39654--39713	31	2.0	31	93	3	104	58	0	20	21	1.40
41753--41777	2	12.5	2	100	0	50	52	0	0	48	1.00
53465--53620	43	3.4	43	69	13	141	34	25	18	21	1.96
53252--53811	106	5.5	98	87	8	741	34	25	18	21	1.96
53257--53742	98	4.9	95	91	5	668	34	25	18	21	1.96
56392--56516	29	4.3	29	76	2	99	41	20	8	29	1.81
56516--56546	7	4.4	7	91	0	53	29	29	29	12	1.94
56540--56579	13	3.2	13	85	7	64	17	22	42	17	1.89
56542--56578	12	2.9	13	88	8	58	18	18	45	16	1.85
56604--56655	9	5.3	10	84	11	72	36	30	19	13	1.90
63691--63817	29	4.3	29	71	7	87	40	22	7	29	1.82
63832--63873	13	3.3	13	86	6	68	16	21	45	16	1.86
63852--63903	18	2.9	18	91	0	86	19	15	46	19	1.85
63916--63967	9	5.3	10	84	11	72	36	30	19	13	1.90
66445--66473	5	5.8	5	100	0	58	82	0	0	17	0.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79242--79279	19	2.0	19	89	0	58	55	0	2	42	1.14
81226--82125	449	2.0	449	97	0	1701	31	13	14	40	1.85
82980--83040	31	2.0	31	93	0	104	55	21	4	18	1.60
82976--83052	31	2.5	31	83	8	102	53	19	7	19	1.69
86982--87126	70	2.0	72	92	2	240	22	22	17	38	1.93
95600--95837	65	3.7	65	89	0	350	28	12	23	36	1.91
96650--96699	2	25.0	2	95	0	91	50	2	0	48	1.12
98407--98886	54	8.9	54	88	2	626	32	20	20	26	1.97
99433--99470	2	19.5	2	94	5	69	52	0	0	47	1.00
100249--100303	24	2.3	23	85	11	76	16	9	3	70	1.27
100652--100683	14	2.3	14	100	0	64	31	9	15	43	1.78
100658--100691	14	2.4	14	90	0	50	32	8	14	44	1.76
101314--101362	24	2.0	24	100	0	98	34	12	0	53	1.39
106465--106633	88	1.9	89	85	3	234	37	14	13	34	1.86
108601--108638	2	19.0	2	94	0	67	52	0	0	47	1.00
110169--110205	4	9.2	4	93	0	65	75	0	21	2	0.92
111569--111617	23	2.1	23	88	7	73	22	18	22	36	1.95
111631--111686	21	2.5	22	88	8	87	16	23	25	35	1.94
113084--113212	59	2.2	58	80	4	141	48	4	13	32	1.63
118312--118374	25	2.5	25	97	0	117	47	30	0	22	1.51
120258--120354	23	4.5	22	73	10	85	25	20	27	25	1.99
120634--120712	36	2.2	36	97	0	149	32	20	17	29	1.95

Tables:   1

The End!