genome.fa.s156.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000156.1 Hibiscus syriacus cultivar Beakdansim tig00000277_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  107039

Tables:   1   

This is table  1  of  1  ( 74 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1648--1721	29	2.5	31	80	10	91	43	6	2	47	1.44
1836--1889	21	2.6	21	100	0	108	61	11	0	27	1.30
12004--12072	28	2.5	28	90	4	113	20	14	27	37	1.91
18957--19284	75	4.5	73	86	3	437	39	14	13	33	1.84
18957--19285	74	4.5	73	87	2	455	39	14	13	33	1.85
19367--19826	112	4.1	112	92	2	753	47	11	12	28	1.77
22061--23757	244	7.0	245	95	1	2932	40	13	8	38	1.74
23828--23865	15	2.6	15	87	4	51	50	2	0	47	1.15
26584--26740	65	2.4	65	82	5	176	28	17	22	31	1.97
26584--26782	65	3.1	64	76	14	169	28	17	22	31	1.97
28864--28903	21	1.9	21	90	10	64	37	10	0	52	1.35
29812--29851	21	1.9	21	90	10	64	37	10	0	52	1.35
28645--31489	948	3.0	948	98	0	5512	25	20	14	40	1.90
30760--30799	21	1.9	21	90	10	64	37	10	0	52	1.35
32712--32760	19	2.7	17	84	9	53	26	20	28	24	1.99
32732--32891	65	2.5	65	83	5	191	26	17	24	31	1.97
34694--34726	16	2.0	17	88	5	50	39	0	24	36	1.56
34768--35019	82	3.0	81	80	4	270	32	18	18	30	1.95
36589--36649	19	3.2	20	77	13	58	54	4	0	40	1.22
39263--39311	25	2.0	25	87	0	71	61	2	0	36	1.08
40211--40255	21	2.1	21	87	0	63	31	28	24	15	1.96
40678--40734	20	2.7	22	78	15	66	43	5	14	36	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41266--41343	31	2.5	31	83	4	86	21	19	23	35	1.96
41289--41391	31	3.4	31	87	2	127	22	20	24	33	1.97
41316--41415	30	3.3	30	90	2	139	21	21	26	32	1.98
46445--46483	16	2.4	16	91	0	60	20	28	17	33	1.96
46599--46638	17	2.4	17	86	0	62	45	0	7	47	1.31
46825--46865	15	2.7	15	88	0	55	39	2	0	58	1.11
49095--49155	17	3.4	17	89	10	95	50	1	0	47	1.10
49190--49228	20	2.0	20	94	0	69	56	0	5	38	1.22
49206--49344	31	4.7	31	70	21	111	42	7	8	41	1.63
49295--49346	13	3.6	13	75	22	50	38	5	9	46	1.61
49271--49379	33	3.4	31	84	7	121	42	4	9	44	1.57
49216--49349	18	7.7	17	67	22	57	41	7	8	42	1.64
49340--49503	20	7.4	20	75	18	148	52	1	6	39	1.37
49297--49389	33	2.9	33	84	7	113	46	3	7	43	1.48
49340--49501	45	3.6	45	95	0	288	52	1	6	39	1.37
49369--49525	29	5.3	29	69	19	101	52	1	6	38	1.38
49794--49972	2	84.0	2	65	21	62	46	5	6	41	1.52
49768--49895	9	14.4	9	67	26	69	42	3	8	45	1.50
49768--49895	20	6.1	20	72	16	82	42	3	8	45	1.50
49849--49920	20	3.5	20	81	9	76	47	4	5	43	1.46
49849--49946	29	3.4	29	77	5	74	45	5	7	41	1.53
49819--50005	51	3.6	51	82	10	184	45	5	7	41	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49956--50036	35	2.3	33	84	12	108	40	4	12	41	1.64
50084--50192	33	3.4	31	84	7	121	42	4	8	44	1.54
50108--50226	13	9.2	13	64	20	52	44	2	8	44	1.47
49941--50170	119	2.0	116	87	7	331	42	6	9	41	1.63
49956--50159	33	6.6	32	70	21	116	40	6	10	42	1.66
50117--50162	18	2.6	17	79	3	56	41	6	8	43	1.61
50154--50214	20	3.4	20	70	29	73	50	0	6	42	1.28
50110--50238	33	3.9	33	84	8	140	46	2	7	43	1.45
50242--50298	7	8.1	7	77	14	64	42	36	0	21	1.53
50244--50307	21	3.0	21	95	2	110	43	31	0	25	1.55
50300--50356	22	2.6	22	86	5	71	49	5	1	43	1.35
50359--50440	11	7.8	10	70	22	53	47	2	2	47	1.28
50403--50440	11	3.5	11	88	0	58	44	2	2	50	1.30
50508--50612	2	51.0	2	67	16	54	45	5	2	45	1.41
50487--50535	20	2.5	20	86	3	73	40	4	10	44	1.57
50532--50600	22	3.2	22	80	15	99	44	5	2	46	1.42
50492--50612	20	6.2	20	73	18	94	43	5	4	45	1.49
65746--65776	15	2.1	15	100	0	62	58	0	0	41	0.98
70217--70275	26	2.3	26	90	0	91	50	5	13	30	1.63
72179--72211	6	5.5	6	100	0	66	0	15	51	33	1.43
72341--72454	20	5.6	20	66	12	70	36	26	18	18	1.94
72338--72479	41	3.5	40	88	7	214	35	26	17	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72338--72483	21	7.1	21	66	9	95	36	26	17	19	1.94
76452--76508	28	2.0	28	86	6	80	31	17	17	33	1.93
79290--79353	32	2.0	32	96	0	119	15	20	25	39	1.92
80264--80366	35	3.0	34	72	12	93	42	5	5	45	1.52
80307--80428	62	2.0	62	85	4	165	44	4	8	42	1.55
82620--82687	34	2.0	34	100	0	136	44	17	5	32	1.73
103385--103479	47	2.0	47	100	0	190	37	26	8	27	1.85
103581--103679	33	3.0	33	86	0	135	36	12	17	34	1.87

Tables:   1

The End!