genome.fa.s1561.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001561.1 Hibiscus syriacus cultivar Beakdansim tig00003090_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  151830

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3314--3349	16	2.2	17	95	5	65	41	19	5	33	1.75
4098--4181	41	2.0	42	86	2	116	28	27	19	25	1.98
4098--4181	21	4.0	21	85	3	116	28	27	19	25	1.98
6625--6957	81	4.1	81	92	0	522	30	22	12	35	1.91
7851--7886	18	2.0	18	100	0	72	27	33	22	16	1.95
8554--8625	35	2.0	36	89	2	110	22	22	19	36	1.95
19138--19337	105	1.9	105	83	2	258	25	18	20	36	1.95
19376--19443	23	3.0	23	88	0	91	20	26	26	26	1.99
19474--19506	17	2.0	17	88	5	50	33	30	6	30	1.82
24756--24823	23	3.0	23	86	2	93	22	27	25	25	1.99
24854--24886	17	2.0	17	88	5	50	33	30	6	30	1.82
44125--44202	33	2.4	32	83	12	88	42	0	0	57	0.98
44115--44202	33	2.7	30	79	10	86	42	0	1	56	1.06
44361--44420	27	2.3	26	80	5	68	35	0	5	60	1.19
46004--46076	21	3.5	21	83	7	94	17	34	23	24	1.96
46586--46692	34	3.1	34	86	0	160	53	5	3	37	1.43
47115--47493	127	3.0	127	94	0	645	33	20	23	21	1.97
60545--60666	54	2.3	54	94	0	217	35	25	11	27	1.90
71779--71815	18	2.0	19	89	5	58	43	0	13	43	1.44
71818--71894	22	3.5	22	80	3	100	53	0	2	44	1.14
71809--71942	45	2.8	46	86	10	171	50	0	5	44	1.26
71834--71974	53	2.6	53	79	11	171	48	0	6	44	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72794--72915	45	2.5	47	85	12	167	42	5	0	51	1.25
72839--72990	22	6.5	22	68	15	99	42	6	0	50	1.28
72827--72921	45	2.1	45	98	0	181	40	8	0	51	1.32
72883--72989	37	2.9	36	68	9	99	42	7	0	49	1.31
72918--72967	18	2.7	19	84	6	66	42	12	0	46	1.41
74792--74842	18	2.8	18	84	3	66	33	0	3	62	1.13
76208--76293	2	43.0	2	100	0	172	50	50	0	0	1.00
77935--78039	35	3.0	35	90	2	167	48	17	5	28	1.69
78286--80111	912	2.0	912	95	0	3323	26	23	17	31	1.97
83492--83552	21	3.2	21	65	29	64	42	21	4	31	1.74
83453--83558	35	3.0	35	94	1	176	46	18	5	29	1.72
85157--85198	2	21.5	2	95	4	77	52	0	0	47	1.00
91679--91714	16	2.2	17	95	5	65	41	19	5	33	1.75
92463--92543	21	3.9	21	88	0	126	27	22	19	30	1.98
92463--92547	42	2.0	42	93	0	143	28	22	18	30	1.97
94687--94725	2	19.5	2	100	0	78	48	0	0	51	1.00
94878--95203	81	4.1	81	89	3	468	30	22	11	34	1.90
96653--96724	36	2.0	36	86	2	101	22	22	20	34	1.97
100767--100809	21	2.0	21	95	0	77	41	18	16	23	1.89
101157--101228	38	1.9	38	97	2	137	12	9	38	38	1.76
101157--101245	38	2.4	37	88	7	135	12	10	38	39	1.77
100945--101812	257	3.4	257	88	5	1266	23	11	28	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101413--101502	38	2.4	37	87	7	128	13	11	40	35	1.80
101674--101771	37	2.4	41	80	12	107	12	11	37	38	1.79
101681--101764	37	2.3	37	87	8	127	14	10	36	38	1.81
102299--102343	18	2.7	16	82	6	54	28	26	6	37	1.82
112987--113021	18	1.9	18	88	0	52	54	0	17	28	1.43
116403--116610	105	2.0	105	82	3	258	26	17	19	36	1.94
116640--116708	23	3.0	23	82	0	75	20	26	24	28	1.99
116739--116771	17	2.0	17	88	5	50	33	30	6	30	1.82
122017--122080	23	2.8	23	95	0	110	18	26	26	28	1.98
122116--122148	17	2.0	17	88	5	50	33	30	6	30	1.82
142233--142270	19	2.0	20	94	5	69	23	0	7	68	1.16
144029--144101	21	3.5	21	88	7	112	17	35	24	21	1.95
144611--144677	34	2.0	34	90	0	107	55	5	2	35	1.40
144796--144834	20	2.0	20	85	10	53	12	10	5	71	1.28
144796--144836	21	2.0	20	85	4	55	12	12	4	70	1.31

Tables:   1

The End!