genome.fa.s1562.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001562.1 Hibiscus syriacus cultivar Beakdansim tig00003091_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68365

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2320--2344	13	1.9	13	100	0	50	72	0	12	16	1.13
6540--6593	26	2.2	26	86	6	76	55	9	0	35	1.32
8502--8555	21	2.5	21	84	3	81	35	24	22	18	1.96
8788--8829	15	2.8	15	85	0	57	66	4	0	28	1.12
9018--9371	130	2.7	130	81	5	399	23	16	32	27	1.96
9440--9512	37	2.0	37	94	0	128	42	12	19	26	1.86
9442--9535	37	2.6	35	83	11	118	42	14	18	24	1.88
9916--10057	37	3.9	36	79	8	146	42	12	15	29	1.84
18823--18852	14	2.1	14	100	0	60	36	6	30	26	1.82
23178--23253	3	25.3	3	79	12	77	59	0	2	38	1.12
23180--23250	14	4.9	15	80	19	73	57	0	2	39	1.13
23178--23253	17	4.4	16	82	12	89	59	0	2	38	1.12
23185--23247	11	5.7	11	78	21	62	57	0	3	39	1.15
23402--23503	20	5.1	20	93	0	168	27	18	27	26	1.98
23457--23971	119	4.3	119	91	0	814	33	20	16	30	1.94
23705--23748	20	2.2	20	87	0	61	29	20	22	27	1.99
23814--23867	20	2.7	20	85	0	63	27	24	24	24	2.00
29704--29796	46	2.0	47	85	6	127	30	20	13	35	1.92
32200--32256	3	19.3	3	76	16	57	59	0	1	38	1.08
32201--32259	8	7.5	8	76	17	61	59	0	1	38	1.08
32200--32258	30	2.0	30	86	6	84	59	0	1	38	1.08
33623--33665	18	2.4	18	88	7	61	18	4	0	76	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37955--38004	21	2.4	21	89	0	73	42	20	22	16	1.89
39291--39337	2	23.0	2	95	4	85	48	2	0	48	1.13
41792--41869	3	26.3	3	77	12	81	60	1	2	35	1.19
41792--41869	17	4.9	16	79	14	63	60	1	2	35	1.19
42689--42728	21	1.9	21	85	10	55	20	10	5	65	1.42
42696--42733	20	1.9	20	84	10	51	18	10	5	65	1.41
43364--43406	18	2.4	18	88	7	61	18	4	0	76	0.95
44219--44249	13	2.5	13	94	5	55	80	0	12	6	0.89
47702--47748	21	2.2	21	84	0	58	38	14	21	25	1.92
48834--48889	25	2.3	25	96	3	105	33	17	0	48	1.48
51875--51903	15	1.9	15	100	0	58	24	6	0	68	1.13
51875--51944	5	13.6	5	73	5	50	21	7	4	67	1.33
55083--55114	17	1.9	16	93	6	55	21	6	0	71	1.07
55895--55932	20	1.9	20	89	10	60	31	0	0	68	0.90
55900--55932	15	2.3	15	89	5	50	27	0	0	72	0.85
56018--56090	26	3.2	22	80	16	85	69	4	0	26	1.06
56033--56103	26	2.7	27	95	4	135	73	2	0	23	0.97
56044--56095	5	10.4	5	76	15	54	75	3	0	21	0.97
56033--56103	14	5.4	13	77	9	81	73	2	0	23	0.97
58138--58171	18	1.9	17	88	5	50	64	2	0	32	1.08
58626--59041	213	2.0	213	89	1	647	40	8	16	34	1.79
59453--59517	30	2.2	30	88	0	94	32	15	32	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61537--61612	30	2.6	29	83	6	98	23	21	21	34	1.97
62578--62623	23	2.0	24	86	4	67	32	45	0	21	1.52
64561--64594	4	8.5	4	86	0	50	70	0	5	23	1.09
65854--66021	76	2.3	71	79	11	171	48	5	2	42	1.42
66052--66139	34	2.6	34	85	5	108	40	6	4	47	1.50
66796--67329	84	6.4	83	77	5	517	24	19	25	30	1.98
66730--67082	165	2.1	167	84	6	464	23	20	24	31	1.98
66788--67321	165	3.2	167	80	5	469	24	18	25	30	1.98
66799--67329	248	2.1	249	89	0	814	24	19	25	30	1.98

Tables:   1

The End!