genome.fa.s1564.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001564.1 Hibiscus syriacus cultivar Beakdansim tig00003098_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94498

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2764--2805	19	2.2	19	91	0	66	16	19	23	40	1.91
2773--2924	19	8.8	19	65	24	86	15	22	20	42	1.89
2775--2903	65	2.0	66	93	1	224	13	23	20	42	1.88
2779--2904	33	3.8	33	86	6	184	14	23	19	42	1.88
5171--5205	12	3.0	12	95	4	63	0	25	0	74	0.82
5376--5429	24	2.3	23	87	6	81	38	20	16	24	1.92
6200--6251	21	2.5	21	87	3	70	38	17	23	21	1.93
6240--6320	20	3.9	20	72	15	56	37	22	18	22	1.95
6527--6595	20	3.5	19	72	4	66	39	24	18	17	1.92
6565--6624	32	1.9	32	82	3	77	45	21	18	15	1.86
6624--6697	19	4.5	16	83	16	66	13	20	18	47	1.82
6620--6687	19	3.8	19	87	12	101	13	22	17	47	1.82
6690--6740	20	2.5	20	100	0	102	15	13	31	39	1.87
8731--8779	20	2.5	20	90	6	73	36	26	22	14	1.92
8731--8786	20	2.8	19	83	5	58	41	23	19	16	1.90
8782--8861	19	4.5	19	80	16	109	48	18	18	13	1.80
8729--8863	52	2.6	53	85	3	175	44	21	20	14	1.86
8801--8882	32	2.5	33	96	2	148	48	21	18	10	1.78
8911--8968	14	3.9	14	79	16	62	15	15	18	50	1.79
8892--8984	32	2.8	33	91	3	152	16	19	18	46	1.85
8969--9012	20	2.2	20	88	4	63	18	25	20	36	1.95
8978--9023	20	2.3	20	84	0	56	17	21	23	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9502--9546	18	2.5	18	85	0	63	15	15	42	26	1.87
11168--11215	21	2.3	21	85	3	62	25	14	39	20	1.91
11175--11217	21	2.0	21	90	0	68	20	16	41	20	1.90
11385--11518	20	6.7	20	82	5	128	24	17	24	32	1.97
11385--11520	60	2.2	60	85	1	191	24	17	24	33	1.96
11938--12012	21	3.6	21	75	7	64	24	24	17	34	1.96
12021--12087	20	3.3	20	89	0	98	31	23	19	25	1.98
12924--12975	24	2.2	23	86	6	77	21	19	17	42	1.89
15392--15497	20	5.3	20	86	2	133	33	24	23	17	1.96
15370--15504	20	7.1	20	75	18	126	34	22	23	18	1.96
15489--15563	33	2.2	34	90	2	116	48	18	20	13	1.81
15579--15674	33	2.8	33	82	3	120	13	20	18	46	1.83
15781--15817	14	2.6	14	86	0	56	48	21	0	29	1.50
17207--17308	42	2.4	42	74	8	109	23	20	33	22	1.97
17787--17835	20	2.5	20	93	0	80	34	26	20	18	1.95
17880--17926	20	2.3	20	92	0	76	23	19	21	36	1.95
17842--17959	53	2.2	53	83	5	141	17	19	20	42	1.90
17900--17993	33	2.8	34	83	3	127	13	19	22	44	1.85
17848--18013	87	1.9	87	94	0	296	16	19	21	42	1.89
17965--18016	20	2.6	20	96	0	95	17	19	25	38	1.93
19881--19950	20	3.5	20	90	0	86	41	25	17	15	1.89
19880--19993	33	3.2	33	73	17	95	43	24	18	13	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20318--20383	22	3.0	22	86	4	89	21	15	39	24	1.91
20579--20717	20	6.9	20	98	0	269	19	20	20	40	1.92
21148--21215	34	2.0	33	85	5	91	50	4	1	44	1.31
26054--26091	6	6.3	6	100	0	76	18	18	47	15	1.83
28405--28464	31	1.9	31	89	0	93	31	5	13	50	1.63
28406--28477	31	2.3	31	83	4	83	31	6	12	48	1.67
31360--31384	13	1.9	13	100	0	50	80	8	8	4	1.03
32322--32397	36	2.1	36	97	2	145	21	7	22	48	1.75
41111--41153	18	2.4	18	84	7	52	23	9	2	65	1.34
41287--41337	22	2.3	22	100	0	102	39	0	19	41	1.52
41284--41341	22	2.5	24	81	18	77	37	0	18	43	1.51
46344--46376	11	3.0	11	90	0	57	21	0	0	78	0.75
47115--47157	18	2.4	18	84	7	52	23	9	2	65	1.34
57385--57467	21	3.8	22	80	9	89	21	24	28	25	1.99
57385--57466	23	3.7	23	82	4	89	21	24	29	24	1.99
62637--62682	24	1.9	24	100	0	92	43	8	21	26	1.81
81794--81884	22	4.1	21	81	8	83	20	27	28	23	1.99
88379--88412	17	2.1	16	88	5	50	5	23	38	32	1.79

Tables:   1

The End!