Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001565.1 Hibiscus syriacus cultivar Beakdansim tig00003099_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79311

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
989--1014
11
2.4
11
100
0
52
26
0
0
73
0.84
8852--8930
32
2.5
32
81
2
88
39
1
8
50
1.42
25163--25208
17
2.8
17
75
12
51
41
2
0
56
1.11
27511--27568
29
2.0
29
89
0
89
13
36
27
22
1.92
27626--27658
10
3.3
10
84
16
50
24
36
30
9
1.86
27607--27676
34
2.1
33
83
2
86
27
32
27
12
1.93
27616--27682
33
2.0
34
85
2
91
26
32
29
10
1.90
27653--27705
23
2.3
24
83
9
74
30
24
33
11
1.90
27723--27778
29
1.9
29
89
7
87
19
26
39
14
1.90
27807--27831
12
2.1
12
100
0
50
16
36
8
40
1.77
27849--27905
29
2.0
29
96
0
105
17
33
35
14
1.90
30649--30697
23
2.1
24
84
3
64
61
8
2
28
1.36
33687--34166
128
3.7
128
93
1
827
21
24
21
32
1.98
33687--34172
257
1.9
256
94
0
864
21
24
21
32
1.98
34531--34637
34
3.1
34
86
0
151
36
2
4
56
1.35
35157--35227
21
3.4
21
88
7
108
21
26
32
19
1.97
35233--35280
21
2.3
21
85
0
60
22
12
39
25
1.89
37004--37085
33
2.5
32
82
11
96
58
1
0
40
1.06
50263--50294
16
1.9
17
93
6
57
34
21
6
37
1.79
50716--50817
35
2.9
34
81
8
98
43
16
8
31
1.79
50756--50837
34
2.4
35
95
2
148
40
18
12
29
1.87
51595--51693
7
14.1
7
100
0
198
29
14
14
42
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54985--55056
36
2.0
37
86
5
103
44
0
4
51
1.20
55192--55243
16
3.2
16
88
0
77
26
21
7
44
1.79
60313--60350
20
1.9
20
88
0
58
31
2
2
63
1.22
60888--60914
11
2.5
11
100
0
54
22
0
0
77
0.76
63822--63857
10
3.8
9
92
7
54
38
0
0
61
0.96
63781--63859
41
1.9
41
82
5
97
39
0
0
60
0.97
71311--71373
30
2.0
31
82
11
76
57
3
0
39
1.15
73527--73575
24
2.0
24
100
0
98
51
8
8
32
1.61
76718--76865
60
2.5
60
82
4
165
32
15
4
47
1.64
77874--77956
29
3.0
29
74
16
104
54
6
14
25
1.63

Tables:   1

The End!