Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001567.1 Hibiscus syriacus cultivar Beakdansim tig00003102_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67822

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1977--2018
18
2.3
18
95
0
75
38
40
11
9
1.75
2221--2264
23
2.0
22
82
13
54
40
0
0
59
0.98
4321--4391
17
4.2
16
74
20
65
22
0
5
71
1.06
5968--6012
11
4.0
11
88
11
65
51
2
0
46
1.13
5969--6012
21
2.0
22
91
8
72
50
2
0
47
1.13
5969--6001
10
3.2
10
95
4
57
54
0
0
45
0.99
8644--8674
16
1.9
16
93
0
53
51
0
3
45
1.17
9506--9579
37
2.0
37
92
7
125
28
8
24
39
1.84
16101--16127
4
6.8
4
100
0
54
74
0
0
25
0.83
18102--18263
60
2.7
59
75
11
143
37
6
23
32
1.80
37994--38050
24
2.4
24
87
0
78
31
24
26
17
1.97
39152--39181
5
5.8
5
92
7
51
40
40
0
20
1.52
40013--40076
25
2.6
25
100
0
128
35
7
18
37
1.80
40583--40801
41
5.4
41
77
9
216
17
22
23
35
1.95
40608--40974
61
6.0
61
72
10
275
16
22
23
37
1.94
40608--40680
20
3.6
20
75
3
83
10
21
27
39
1.87
40587--40692
20
5.2
21
68
7
67
17
19
26
35
1.95
40790--41015
41
5.4
42
88
6
286
16
21
23
38
1.93
40790--41015
84
2.7
83
83
9
284
16
21
23
38
1.93
40938--41009
22
3.4
22
73
11
87
18
19
25
37
1.94
40959--41024
19
3.3
19
72
12
69
18
19
21
40
1.91
40797--41035
125
1.9
122
81
10
288
18
20
23
38
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41113--41168
5
10.6
5
98
1
85
25
55
19
0
1.43
41166--41196
5
6.4
5
96
3
55
35
22
41
0
1.54
41675--41725
5
9.6
5
97
2
75
0
19
54
25
1.44
41808--41873
19
3.3
19
72
12
60
40
22
18
18
1.91
41886--41958
20
3.6
20
74
17
78
38
26
24
10
1.88
41817--41983
41
4.0
42
92
3
252
37
24
22
15
1.93
42163--42239
37
2.1
36
83
9
93
46
1
3
48
1.28
46570--46618
24
2.0
24
100
0
98
44
12
8
34
1.71
51529--51906
127
3.0
126
92
1
612
40
25
7
26
1.81
55345--55565
111
2.0
110
91
0
361
41
17
20
20
1.90
58655--58685
16
1.9
16
100
0
62
51
19
9
19
1.74
67660--67715
26
2.2
26
100
0
112
35
28
7
28
1.84

Tables:   1

The End!