Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001568.1 Hibiscus syriacus cultivar Beakdansim tig00003103_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 302910
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
File 1 of 2
Found at i:12 original size:7 final size:7
Alignment explanation
Indices: 1--7535 Score: 12663
Period size: 7 Copynumber: 1110.0 Consensus size: 7
1 TAAACCC
1 TAAACCC
8 TAAA-CC
1 TAAACCC
*
14 GAAACCC
1 TAAACCC
21 T-AACCC
1 TAAACCC
27 TAAACCC
1 TAAACCC
34 TAAACCC
1 TAAACCC
41 TAAACCC
1 TAAACCC
48 TAAACCC
1 TAAACCC
55 TAAACCC
1 TAAACCC
62 TAAACCC
1 TAAACCC
69 TAAACCC
1 TAAACCC
76 TTAAA-CC
1 -TAAACCC
*
83 GAAACCC
1 TAAACCC
90 TAAACCC
1 TAAACCC
97 TAAACCC
1 TAAACCC
104 TAAACCC
1 TAAACCC
111 TAAA-CC
1 TAAACCC
*
117 GAAACCC
1 TAAACCC
124 TAAACCC
1 TAAACCC
131 TAAA-CC
1 TAAACCC
137 TAAACCC
1 TAAACCC
144 TAAACCC
1 TAAACCC
151 T-AACCC
1 TAAACCC
157 TAAACCC
1 TAAACCC
164 TAAACCC
1 TAAACCC
171 TAAACCC
1 TAAACCC
178 T-AACCC
1 TAAACCC
184 TAAACCC
1 TAAACCC
191 TAAACCC
1 TAAACCC
198 TAAA-CC
1 TAAACCC
204 TAAACCC
1 TAAACCC
211 TAAACCC
1 TAAACCC
218 TAAA-CC
1 TAAACCC
224 TAAACCC
1 TAAACCC
*
231 TAACCCCC
1 TAA-ACCC
239 TAAACCC
1 TAAACCC
246 TAAA-CC
1 TAAACCC
252 TAAACCC
1 TAAACCC
259 TAAA-CC
1 TAAACCC
265 TAAACCC
1 TAAACCC
272 TAAACCC
1 TAAACCC
279 TAAACCC
1 TAAACCC
286 T-AA-CC
1 TAAACCC
291 TAAACCC
1 TAAACCC
298 TAAACCC
1 TAAACCC
305 TAAACCC
1 TAAACCC
312 TAAACCC
1 TAAACCC
319 -AAACCC
1 TAAACCC
325 TAAACCC
1 TAAACCC
332 TAAACCC
1 TAAACCC
339 TAAACCC
1 TAAACCC
346 TAAACCC
1 TAAACCC
353 TAAA-CC
1 TAAACCC
359 T-AACCC
1 TAAACCC
365 TAAACCC
1 TAAACCC
*
372 GAAACCC
1 TAAACCC
379 TAAA-CC
1 TAAACCC
385 TAAACCC
1 TAAACCC
392 TAAA--C
1 TAAACCC
*
397 AAAACCC
1 TAAACCC
404 TAAACCC
1 TAAACCC
411 TAAA-CC
1 TAAACCC
*
417 GAAACCC
1 TAAACCC
424 TAAACCC
1 TAAACCC
431 T-AACCC
1 TAAACCC
437 T-AACCC
1 TAAACCC
443 TAAACCC
1 TAAACCC
450 TAAACCC
1 TAAACCC
*
457 GAAACCC
1 TAAACCC
464 --AACCC
1 TAAACCC
469 TAAACCC
1 TAAACCC
476 T-AACCC
1 TAAACCC
482 TAAACCC
1 TAAACCC
489 TAAACCC
1 TAAACCC
496 TAAA-CC
1 TAAACCC
502 TAAACCC
1 TAAACCC
509 TAAACCC
1 TAAACCC
516 TAAACCC
1 TAAACCC
523 TAAA-CC
1 TAAACCC
529 TAAACCC
1 TAAACCC
536 TAAA-CC
1 TAAACCC
542 TAAACCC
1 TAAACCC
*
549 GAAA-CC
1 TAAACCC
555 TAAACCC
1 TAAACCC
562 TAAACCC
1 TAAACCC
569 T-AACCC
1 TAAACCC
575 TAAACCC
1 TAAACCC
582 TAAACCC
1 TAAACCC
589 -AAACCC
1 TAAACCC
595 TAAACCC
1 TAAACCC
602 TAAACCC
1 TAAACCC
609 T-AACCC
1 TAAACCC
615 TAAACCC
1 TAAACCC
622 TAAACCC
1 TAAACCC
629 TAAA-CC
1 TAAACCC
635 TAAACCC
1 TAAACCC
642 TAAACCC
1 TAAACCC
649 TAAACCC
1 TAAACCC
656 TAAAACCC
1 T-AAACCC
664 TAAACCC
1 TAAACCC
671 TAAACCC
1 TAAACCC
678 TAAACCC
1 TAAACCC
685 TAAACCC
1 TAAACCC
692 TAAA-CC
1 TAAACCC
698 TAAACCC
1 TAAACCC
705 TAAA-CC
1 TAAACCC
711 TAAACCC
1 TAAACCC
718 TAAA-CC
1 TAAACCC
724 TAAACCC
1 TAAACCC
731 TAAACCC
1 TAAACCC
738 TAAACCC
1 TAAACCC
745 T-AACCC
1 TAAACCC
751 TAAACCC
1 TAAACCC
758 TAAACCC
1 TAAACCC
765 TAAACCC
1 TAAACCC
772 TAAACCC
1 TAAACCC
779 TAAACCC
1 TAAACCC
786 TAAACCC
1 TAAACCC
793 TAAACCC
1 TAAACCC
800 TAAACCC
1 TAAACCC
807 TAAACCC
1 TAAACCC
814 TAAA--C
1 TAAACCC
819 TAAACCC
1 TAAACCC
826 -AAACCC
1 TAAACCC
832 TAAACCC
1 TAAACCC
839 TAAACCC
1 TAAACCC
846 T-AACCC
1 TAAACCC
852 TAAACCC
1 TAAACCC
859 TAAACCC
1 TAAACCC
866 TAAACCC
1 TAAACCC
873 TAAACCC
1 TAAACCC
880 TAAACCC
1 TAAACCC
887 TAAA-CC
1 TAAACCC
893 TAAACCC
1 TAAACCC
900 TAAACCC
1 TAAACCC
907 TAAACCC
1 TAAACCC
914 T-AACCC
1 TAAACCC
920 TAAACCCC
1 TAAA-CCC
928 TAAACCC
1 TAAACCC
935 TAAACCC
1 TAAACCC
942 TAAACCC
1 TAAACCC
949 T-AACCC
1 TAAACCC
955 TAAACCC
1 TAAACCC
962 TAAACCCTAC
1 TAAA-CC--C
972 TAAACCC
1 TAAACCC
979 TAAACCC
1 TAAACCC
986 TAAACCCTC
1 TAAA-CC-C
995 TAAACCC
1 TAAACCC
1002 TAAACCC
1 TAAACCC
1009 T-AACCC
1 TAAACCC
1015 TAAACCC
1 TAAACCC
1022 TAAACCC
1 TAAACCC
1029 TAAA-CC
1 TAAACCC
1035 --AACCC
1 TAAACCC
1040 TAAACCC
1 TAAACCC
1047 TAAACCC
1 TAAACCC
1054 TAAACCC
1 TAAACCC
1061 TAAACCC
1 TAAACCC
1068 TAAACCC
1 TAAACCC
1075 TAAACCC
1 TAAACCC
1082 TAAACCC
1 TAAACCC
1089 TAAACCC
1 TAAACCC
1096 T-AACCC
1 TAAACCC
1102 TAAACCC
1 TAAACCC
1109 TAAACCC
1 TAAACCC
1116 TAAACCC
1 TAAACCC
1123 TAAA-CC
1 TAAACCC
1129 TAAACCC
1 TAAACCC
1136 TAAA-CC
1 TAAACCC
1142 TAAACCC
1 TAAACCC
1149 TAAACCC
1 TAAACCC
1156 TAAACCC
1 TAAACCC
1163 TAAACCC
1 TAAACCC
1170 TAAACCC
1 TAAACCC
1177 TAAACCC
1 TAAACCC
1184 TAAACCCC
1 TAAA-CCC
1192 TAAACCC
1 TAAACCC
1199 TAAA--C
1 TAAACCC
1204 TAAACCC
1 TAAACCC
1211 TAAACCC
1 TAAACCC
1218 -AAACCC
1 TAAACCC
1224 TAAACCC
1 TAAACCC
1231 TAAA-CC
1 TAAACCC
1237 TAAACCC
1 TAAACCC
*
1244 GAAACCC
1 TAAACCC
1251 TAAACCC
1 TAAACCC
1258 T-AACCC
1 TAAACCC
1264 TAAA-CC
1 TAAACCC
1270 TAAACCC
1 TAAACCC
1277 TAAACCC
1 TAAACCC
1284 TAAACCC
1 TAAACCC
1291 TAAACCC
1 TAAACCC
*
1298 GAAACCC
1 TAAACCC
1305 TAAACCC
1 TAAACCC
*
1312 TAAACAC
1 TAAACCC
1319 TAAACCC
1 TAAACCC
1326 TAAACCC
1 TAAACCC
*
1333 GAAACCC
1 TAAACCC
1340 TAAACCC
1 TAAACCC
1347 TAAACCC
1 TAAACCC
1354 TAAACCC
1 TAAACCC
1361 TAAACCC
1 TAAACCC
1368 TAAACCC
1 TAAACCC
1375 TAAA-CC
1 TAAACCC
1381 TAAACCC
1 TAAACCC
1388 -AAA-CC
1 TAAACCC
1393 TAAACCC
1 TAAACCC
1400 TAAACCC
1 TAAACCC
1407 TAAACCC
1 TAAACCC
1414 TAAACCC
1 TAAACCC
1421 TAAA-CC
1 TAAACCC
1427 TAAACCC
1 TAAACCC
1434 TAAA-CC
1 TAAACCC
1440 TAAACCC
1 TAAACCC
1447 TAAACCC
1 TAAACCC
1454 TAAACCC
1 TAAACCC
1461 TAAACCC
1 TAAACCC
1468 TAAACCC
1 TAAACCC
1475 TAAACCC
1 TAAACCC
1482 TAAACCC
1 TAAACCC
1489 TAAACCC
1 TAAACCC
1496 TAAA-CC
1 TAAACCC
1502 TAAACCC
1 TAAACCC
1509 TAAACCC
1 TAAACCC
1516 TAAACCC
1 TAAACCC
1523 TAAACCC
1 TAAACCC
1530 TAAACCC
1 TAAACCC
1537 TAAACCC
1 TAAACCC
1544 TAAA-CC
1 TAAACCC
1550 TAAACCC
1 TAAACCC
1557 T-AACCC
1 TAAACCC
1563 TAAACCC
1 TAAACCC
1570 TAAACCC
1 TAAACCC
1577 TAAACCC
1 TAAACCC
1584 -AAACCC
1 TAAACCC
1590 TAAACCC
1 TAAACCC
1597 TAAACCC
1 TAAACCC
1604 T-AACCC
1 TAAACCC
1610 TAAACCC
1 TAAACCC
1617 T-AACCC
1 TAAACCC
1623 TAAACCC
1 TAAACCC
1630 TAAAACCC
1 T-AAACCC
1638 TAAACCC
1 TAAACCC
1645 TAAACCC
1 TAAACCC
1652 T-AA-CC
1 TAAACCC
1657 T-AACCC
1 TAAACCC
1663 TAAACCC
1 TAAACCC
*
1670 GAAACCC
1 TAAACCC
1677 TAAA-CC
1 TAAACCC
1683 TAAACCC
1 TAAACCC
1690 TAAA-CC
1 TAAACCC
1696 TAAACCC
1 TAAACCC
1703 T-AACCC
1 TAAACCC
1709 T-AACCC
1 TAAACCC
1715 TAAACCC
1 TAAACCC
*
1722 GAAACCC
1 TAAACCC
1729 TAAA-CC
1 TAAACCC
1735 TAAACCC
1 TAAACCC
1742 TAAA-CC
1 TAAACCC
1748 TAAACCC
1 TAAACCC
1755 TAAACCC
1 TAAACCC
1762 T-AACCC
1 TAAACCC
1768 --AACCC
1 TAAACCC
1773 --AACCC
1 TAAACCC
1778 TAAACCC
1 TAAACCC
1785 TAAACCC
1 TAAACCC
1792 TAAACCC
1 TAAACCC
1799 TAAACCC
1 TAAACCC
1806 TAAACCC
1 TAAACCC
1813 TAAACCC
1 TAAACCC
1820 TAAACCC
1 TAAACCC
1827 TAAACCC
1 TAAACCC
1834 TAAACCC
1 TAAACCC
1841 -AAA-CC
1 TAAACCC
1846 TAAACCC
1 TAAACCC
1853 TAAA-CC
1 TAAACCC
1859 TAAACCC
1 TAAACCC
1866 TAAACCC
1 TAAACCC
1873 TAAACCC
1 TAAACCC
1880 TAAACCC
1 TAAACCC
1887 TAAACCC
1 TAAACCC
1894 T-AACCC
1 TAAACCC
1900 TAAACCC
1 TAAACCC
1907 TAAACCC
1 TAAACCC
1914 TAAACCC
1 TAAACCC
1921 TAAACCC
1 TAAACCC
1928 TAAACCC
1 TAAACCC
1935 TAAACCC
1 TAAACCC
1942 TAAACCC
1 TAAACCC
1949 TAAACCC
1 TAAACCC
1956 TAAACCC
1 TAAACCC
1963 TAAACCC
1 TAAACCC
1970 TAAACCC
1 TAAACCC
1977 TAAACCC
1 TAAACCC
1984 TAAACCC
1 TAAACCC
1991 TAAACCC
1 TAAACCC
1998 --AACCC
1 TAAACCC
2003 TAAACCC
1 TAAACCC
2010 TAAACCC
1 TAAACCC
2017 TAAACCC
1 TAAACCC
2024 TAAAAACCC
1 T--AAACCC
2033 TAAACCC
1 TAAACCC
2040 TAAACCC
1 TAAACCC
2047 TAAACCC
1 TAAACCC
2054 TAAACCC
1 TAAACCC
2061 TAAACCC
1 TAAACCC
2068 TAAACCC
1 TAAACCC
2075 TAAACCC
1 TAAACCC
2082 T-AACCC
1 TAAACCC
2088 TAAACCC
1 TAAACCC
2095 TAAACCC
1 TAAACCC
2102 TAAACCC
1 TAAACCC
2109 TAAACCC
1 TAAACCC
2116 --AACCC
1 TAAACCC
2121 TAAA-CC
1 TAAACCC
2127 TAAACCC
1 TAAACCC
2134 TAAACCC
1 TAAACCC
2141 TAAACCC
1 TAAACCC
2148 TAAACCC
1 TAAACCC
2155 TAAACCC
1 TAAACCC
2162 -AAACCC
1 TAAACCC
2168 TAAACCC
1 TAAACCC
2175 TAAACCC
1 TAAACCC
2182 T-AACCC
1 TAAACCC
2188 TAAACCC
1 TAAACCC
2195 TAAACCC
1 TAAACCC
2202 TAAACCC
1 TAAACCC
2209 TAAACCC
1 TAAACCC
2216 TAAACCC
1 TAAACCC
2223 TAAACCC
1 TAAACCC
2230 TAAACCC
1 TAAACCC
2237 TAAACCCC
1 TAAA-CCC
2245 TAAACCC
1 TAAACCC
2252 TAAACCC
1 TAAACCC
2259 TAAACCC
1 TAAACCC
2266 T-AACCC
1 TAAACCC
2272 TAAACCC
1 TAAACCC
2279 TAAACCC
1 TAAACCC
2286 TAAACCC
1 TAAACCC
2293 TAAACCC
1 TAAACCC
2300 TAAACCC
1 TAAACCC
2307 TAAA-CC
1 TAAACCC
2313 TAAACCC
1 TAAACCC
2320 TAAA-CC
1 TAAACCC
2326 TAAACCC
1 TAAACCC
*
2333 GAAACCC
1 TAAACCC
2340 T-AACCC
1 TAAACCC
2346 TAAACCC
1 TAAACCC
*
2353 TAAAAACC
1 T-AAACCC
2361 TAAACCC
1 TAAACCC
2368 TAAACCC
1 TAAACCC
2375 T-AACCC
1 TAAACCC
2381 TAAACCC
1 TAAACCC
2388 TAAACCC
1 TAAACCC
2395 TAAACCC
1 TAAACCC
2402 TAAACCC
1 TAAACCC
2409 TAAACCC
1 TAAACCC
2416 TAAA-CC
1 TAAACCC
2422 TAAACCC
1 TAAACCC
2429 TAAACCC
1 TAAACCC
2436 TAAACCC
1 TAAACCC
2443 TAAACCC
1 TAAACCC
2450 TAAACCC
1 TAAACCC
2457 TAAA-CC
1 TAAACCC
2463 TAAACCC
1 TAAACCC
2470 TAAACCC
1 TAAACCC
2477 T-AACCC
1 TAAACCC
2483 TAAACCC
1 TAAACCC
2490 TAAA--C
1 TAAACCC
2495 TAAACCC
1 TAAACCC
2502 T-AACCC
1 TAAACCC
2508 TAAACCC
1 TAAACCC
2515 TAAA-CC
1 TAAACCC
2521 TAAACCC
1 TAAACCC
2528 TAAACCC
1 TAAACCC
*
2535 GAAACCC
1 TAAACCC
2542 TAAACCC
1 TAAACCC
2549 TAAACCC
1 TAAACCC
2556 TAAA-CC
1 TAAACCC
2562 TAAACCC
1 TAAACCC
2569 T-AACCC
1 TAAACCC
2575 TAAA-CC
1 TAAACCC
2581 TAAACCC
1 TAAACCC
2588 TAAACCC
1 TAAACCC
2595 TAAACCC
1 TAAACCC
2602 TAAACCC
1 TAAACCC
2609 TAAACCC
1 TAAACCC
2616 TAAACCC
1 TAAACCC
2623 GTAAA-CC
1 -TAAACCC
2630 TAAACCC
1 TAAACCC
2637 TAAACCC
1 TAAACCC
2644 TAAA-CC
1 TAAACCC
2650 TAAACCC
1 TAAACCC
2657 T-AACCC
1 TAAACCC
2663 T-AACCC
1 TAAACCC
2669 TAAACCCC
1 TAAA-CCC
2677 TAAACCC
1 TAAACCC
2684 T-AACCC
1 TAAACCC
2690 TAAACCC
1 TAAACCC
2697 TAAACCC
1 TAAACCC
2704 TAAA-CC
1 TAAACCC
2710 TAAACCC
1 TAAACCC
2717 T-AA-CC
1 TAAACCC
2722 T-AACCC
1 TAAACCC
2728 T-AACCC
1 TAAACCC
2734 TAAACCC
1 TAAACCC
2741 TAAACCC
1 TAAACCC
2748 TAAACCC
1 TAAACCC
2755 TAAACCC
1 TAAACCC
*
2762 TAACCCC
1 TAAACCC
2769 TAAA-CC
1 TAAACCC
2775 TAAACCC
1 TAAACCC
2782 TAAA-CC
1 TAAACCC
2788 TAAACCC
1 TAAACCC
2795 TAAACCC
1 TAAACCC
2802 TAAACCC
1 TAAACCC
2809 TAAACCC
1 TAAACCC
2816 T-AACCC
1 TAAACCC
2822 TAAACCC
1 TAAACCC
2829 TAAACCC
1 TAAACCC
2836 TAAACCC
1 TAAACCC
2843 TAAACCC
1 TAAACCC
2850 T-AACCC
1 TAAACCC
2856 TAAA-CC
1 TAAACCC
2862 -AAACCC
1 TAAACCC
2868 TAAACCC
1 TAAACCC
2875 TAAACCC
1 TAAACCC
2882 T-AACCC
1 TAAACCC
2888 TAAACCC
1 TAAACCC
2895 --AACCC
1 TAAACCC
2900 TAAACCC
1 TAAACCC
2907 TAAACCC
1 TAAACCC
2914 --AACCC
1 TAAACCC
2919 TAAACCC
1 TAAACCC
2926 TAAACCC
1 TAAACCC
2933 TAAACCC
1 TAAACCC
2940 TAAA-CC
1 TAAACCC
2946 TAAACCC
1 TAAACCC
2953 T-AACCC
1 TAAACCC
2959 TAAACCC
1 TAAACCC
2966 TAAA-CC
1 TAAACCC
2972 -AAACCC
1 TAAACCC
2978 TAAACCC
1 TAAACCC
2985 TAAACCC
1 TAAACCC
2992 TAAACCC
1 TAAACCC
2999 TAAACCC
1 TAAACCC
3006 TAAACCC
1 TAAACCC
3013 TAAACCC
1 TAAACCC
3020 TAAA-CC
1 TAAACCC
3026 TAAACCC
1 TAAACCC
3033 T--ACCC
1 TAAACCC
3038 TAAACCC
1 TAAACCC
3045 TAAACCC
1 TAAACCC
3052 TAAACCC
1 TAAACCC
3059 TAAACCC
1 TAAACCC
3066 TAAACCC
1 TAAACCC
3073 TAAACCC
1 TAAACCC
3080 TAAACCC
1 TAAACCC
3087 TAAACCC
1 TAAACCC
3094 TAAA-CC
1 TAAACCC
3100 T-AACCC
1 TAAACCC
3106 TAAACCC
1 TAAACCC
3113 TAAACCC
1 TAAACCC
3120 T-AACCC
1 TAAACCC
3126 TAAACCC
1 TAAACCC
3133 TAAACCC
1 TAAACCC
3140 TAAACCC
1 TAAACCC
3147 TAAACCC
1 TAAACCC
3154 TAAA-CC
1 TAAACCC
3160 TAAACCC
1 TAAACCC
3167 TAAACCC
1 TAAACCC
3174 TAAACCC
1 TAAACCC
3181 TAAACCC
1 TAAACCC
3188 TAAA-CC
1 TAAACCC
3194 TAAA-CC
1 TAAACCC
3200 TAAACCC
1 TAAACCC
3207 T-AACCC
1 TAAACCC
3213 TAAACCC
1 TAAACCC
3220 TAAACCC
1 TAAACCC
3227 TAAACCC
1 TAAACCC
3234 TAAACCC
1 TAAACCC
3241 TAAACCC
1 TAAACCC
3248 TAAACCC
1 TAAACCC
3255 TAAACCC
1 TAAACCC
3262 TAAACCC
1 TAAACCC
3269 TAAACCC
1 TAAACCC
*
3276 TAACCCC
1 TAAACCC
3283 TAAA-CC
1 TAAACCC
3289 TAAACCC
1 TAAACCC
3296 TAAACCC
1 TAAACCC
3303 T-AACCC
1 TAAACCC
3309 TAAACCC
1 TAAACCC
3316 TAAACCC
1 TAAACCC
3323 T-AACCC
1 TAAACCC
3329 TAAACCC
1 TAAACCC
3336 TAAACCC
1 TAAACCC
3343 TAAACCC
1 TAAACCC
3350 TAAACCC
1 TAAACCC
3357 TAAACCC
1 TAAACCC
3364 TAAACCC
1 TAAACCC
3371 TAAACCC
1 TAAACCC
3378 TAAACCC
1 TAAACCC
3385 TAAACCC
1 TAAACCC
3392 TAAACCC
1 TAAACCC
3399 TAAACCC
1 TAAACCC
3406 TAAACCC
1 TAAACCC
3413 TAAACCC
1 TAAACCC
3420 -AAA--C
1 TAAACCC
3424 TAAACCC
1 TAAACCC
3431 T-AACCC
1 TAAACCC
3437 TAAACCC
1 TAAACCC
3444 TAAACCC
1 TAAACCC
3451 TAAACCC
1 TAAACCC
3458 T-AA-CC
1 TAAACCC
3463 -AAACCC
1 TAAACCC
3469 TAAACCC
1 TAAACCC
3476 TAAACCC
1 TAAACCC
3483 -AAACCC
1 TAAACCC
3489 TAAACCC
1 TAAACCC
3496 TAAACCC
1 TAAACCC
3503 TAAACCC
1 TAAACCC
3510 TAAACCC
1 TAAACCC
3517 TAAACCC
1 TAAACCC
3524 TAAA-CC
1 TAAACCC
3530 TAAACCC
1 TAAACCC
3537 TAAACCC
1 TAAACCC
3544 TAAACCC
1 TAAACCC
3551 TAAACCC
1 TAAACCC
3558 TAAACCC
1 TAAACCC
3565 T-AACCC
1 TAAACCC
3571 TAAACCC
1 TAAACCC
3578 TAAACCC
1 TAAACCC
3585 TAAA-CC
1 TAAACCC
3591 TAAACCC
1 TAAACCC
3598 TAAACCC
1 TAAACCC
3605 TAAACCC
1 TAAACCC
3612 TAAACCC
1 TAAACCC
*
3619 GAAACCC
1 TAAACCC
3626 TAAACCC
1 TAAACCC
3633 TAAACCC
1 TAAACCC
3640 TAAACCC
1 TAAACCC
3647 TAAA-CC
1 TAAACCC
3653 TAAACCC
1 TAAACCC
3660 TAAACCC
1 TAAACCC
3667 TAAA-CC
1 TAAACCC
3673 TAAACCC
1 TAAACCC
3680 -AAA-CC
1 TAAACCC
3685 TAAACCC
1 TAAACCC
3692 T-AACCC
1 TAAACCC
3698 TAAACCC
1 TAAACCC
3705 TAAACCC
1 TAAACCC
3712 TAAACCC
1 TAAACCC
3719 TAAACCC
1 TAAACCC
3726 TAAA-CC
1 TAAACCC
3732 TAAA-CC
1 TAAACCC
3738 TAAACCC
1 TAAACCC
3745 TAAACCC
1 TAAACCC
3752 TAAACCC
1 TAAACCC
3759 TAAA-CC
1 TAAACCC
3765 TAAACCC
1 TAAACCC
3772 TAAA--C
1 TAAACCC
3777 TAAACCC
1 TAAACCC
3784 TAAACCC
1 TAAACCC
3791 TAAACCC
1 TAAACCC
3798 TAAACCC
1 TAAACCC
3805 TAAACCC
1 TAAACCC
3812 TAAACCC
1 TAAACCC
3819 T-AACCC
1 TAAACCC
3825 TAAACCC
1 TAAACCC
3832 TAAACCC
1 TAAACCC
3839 TAAACCC
1 TAAACCC
3846 TAAACCC
1 TAAACCC
3853 TAAACCC
1 TAAACCC
3860 T-AACCC
1 TAAACCC
3866 TAAACCC
1 TAAACCC
3873 TAAACCC
1 TAAACCC
3880 TAAACCC
1 TAAACCC
3887 TAAACCC
1 TAAACCC
3894 TAAACCC
1 TAAACCC
3901 TAAACCC
1 TAAACCC
3908 TAAA-CC
1 TAAACCC
3914 TAAA-CC
1 TAAACCC
3920 TAAACCC
1 TAAACCC
3927 TAAACCC
1 TAAACCC
3934 --AACCC
1 TAAACCC
3939 T-AACCC
1 TAAACCC
3945 TAAACCC
1 TAAACCC
3952 TAAACCC
1 TAAACCC
3959 T-AACCC
1 TAAACCC
3965 TAAACCC
1 TAAACCC
3972 TAAACCC
1 TAAACCC
3979 TAAACCC
1 TAAACCC
3986 TAAACCC
1 TAAACCC
3993 TAAACCC
1 TAAACCC
4000 TAAACCC
1 TAAACCC
4007 TAAACCC
1 TAAACCC
4014 TAAACCC
1 TAAACCC
4021 TAAACCC
1 TAAACCC
4028 TAAACCC
1 TAAACCC
4035 TAAACCC
1 TAAACCC
4042 TAAACCC
1 TAAACCC
4049 TAAA-CC
1 TAAACCC
4055 TAAACCC
1 TAAACCC
4062 T--ACCC
1 TAAACCC
4067 T-AACCC
1 TAAACCC
4073 TAAACCC
1 TAAACCC
4080 TAAA-CC
1 TAAACCC
4086 T-AACCC
1 TAAACCC
4092 TAAACCC
1 TAAACCC
4099 TAAA-CC
1 TAAACCC
4105 T-AACCC
1 TAAACCC
4111 TAAA-CC
1 TAAACCC
4117 TAAACCC
1 TAAACCC
4124 TAAACCC
1 TAAACCC
4131 TAAACCC
1 TAAACCC
4138 TAAACCC
1 TAAACCC
4145 T-AACCC
1 TAAACCC
4151 TAAACCC
1 TAAACCC
4158 TAAAAACCC
1 T--AAACCC
4167 TAAACCC
1 TAAACCC
4174 TAAACCC
1 TAAACCC
4181 TAAACCC
1 TAAACCC
4188 TAAACCCAAC
1 TAAA-CC--C
4198 TAAACCC
1 TAAACCC
4205 TAAACCC
1 TAAACCC
4212 TAAACCC
1 TAAACCC
4219 TAAACCC
1 TAAACCC
4226 TAAACCC
1 TAAACCC
4233 TAAACCC
1 TAAACCC
4240 TAAACCC
1 TAAACCC
4247 TAAACCC
1 TAAACCC
4254 TAAACCC
1 TAAACCC
4261 T-AA-CC
1 TAAACCC
4266 TAAACCC
1 TAAACCC
4273 TAAACCC
1 TAAACCC
4280 TAAACCC
1 TAAACCC
4287 TAAACCC
1 TAAACCC
4294 TAAACCC
1 TAAACCC
4301 TAAACCC
1 TAAACCC
4308 TAAACCC
1 TAAACCC
4315 TAAACCC
1 TAAACCC
4322 TAAACCC
1 TAAACCC
4329 TAAACCC
1 TAAACCC
4336 TAAA-CC
1 TAAACCC
4342 TAAACCC
1 TAAACCC
4349 TAAACCC
1 TAAACCC
4356 TAAACCC
1 TAAACCC
4363 TAAACCC
1 TAAACCC
4370 T-AACCC
1 TAAACCC
4376 TAAA-CC
1 TAAACCC
4382 T-AACCC
1 TAAACCC
4388 TAAACCC
1 TAAACCC
4395 T-AACCC
1 TAAACCC
4401 TAAACCC
1 TAAACCC
4408 TAAACCCCC
1 TAAA--CCC
4417 T-AACCC
1 TAAACCC
4423 TAAACCC
1 TAAACCC
4430 TAAACCC
1 TAAACCC
4437 TAAACCC
1 TAAACCC
4444 TAAACCC
1 TAAACCC
4451 TAAA-CC
1 TAAACCC
4457 TAAA-CC
1 TAAACCC
4463 TAAACCC
1 TAAACCC
4470 TAAACCC
1 TAAACCC
4477 TAAACCC
1 TAAACCC
4484 TAAACCC
1 TAAACCC
4491 TAAACCC
1 TAAACCC
4498 TAAACCC
1 TAAACCC
4505 TAAACCC
1 TAAACCC
4512 TAAACCC
1 TAAACCC
4519 -AAACCC
1 TAAACCC
4525 TAAACCC
1 TAAACCC
4532 T-AACCC
1 TAAACCC
4538 TAAACCC
1 TAAACCC
4545 --AACCC
1 TAAACCC
*
4550 -CAACCC
1 TAAACCC
4556 TAAACCC
1 TAAACCC
4563 TAAACCC
1 TAAACCC
4570 TAAACCC
1 TAAACCC
4577 TAAACCC
1 TAAACCC
4584 T-AA-CC
1 TAAACCC
*
4589 GAAACCC
1 TAAACCC
4596 TAAACCC
1 TAAACCC
4603 TAAACCC
1 TAAACCC
4610 TAAA-CC
1 TAAACCC
4616 TAAACCC
1 TAAACCC
4623 T-AACCC
1 TAAACCC
4629 TAAACCC
1 TAAACCC
4636 TAAACCC
1 TAAACCC
4643 T-AACCC
1 TAAACCC
4649 TAAACCC
1 TAAACCC
4656 TAAACCC
1 TAAACCC
4663 TAAACCC
1 TAAACCC
4670 TAAACCC
1 TAAACCC
4677 TAAACCC
1 TAAACCC
4684 TAAACCC
1 TAAACCC
4691 T-AACCC
1 TAAACCC
4697 TAAACCC
1 TAAACCC
4704 TAAACCC
1 TAAACCC
4711 TAAACCC
1 TAAACCC
4718 TAAACCC
1 TAAACCC
4725 T-AACCC
1 TAAACCC
4731 TAAACCC
1 TAAACCC
4738 TAAACCC
1 TAAACCC
4745 T-AACCC
1 TAAACCC
4751 TAAACCC
1 TAAACCC
4758 TAAACCC
1 TAAACCC
4765 TAAACCC
1 TAAACCC
4772 TAAACCC
1 TAAACCC
4779 TAAACCC
1 TAAACCC
4786 TAAACCC
1 TAAACCC
4793 TAAACCC
1 TAAACCC
4800 TAAACCC
1 TAAACCC
4807 TAAACCC
1 TAAACCC
4814 TAAACCC
1 TAAACCC
4821 TAAACCC
1 TAAACCC
4828 TAAACCC
1 TAAACCC
4835 TAAACCC
1 TAAACCC
4842 TAAACCC
1 TAAACCC
4849 -AAACCC
1 TAAACCC
4855 TAAACCC
1 TAAACCC
4862 TAAACCC
1 TAAACCC
4869 TAAACCC
1 TAAACCC
4876 TAAACCC
1 TAAACCC
4883 TAAACCC
1 TAAACCC
4890 TAAACCC
1 TAAACCC
4897 TAAACCC
1 TAAACCC
4904 TAAACCC
1 TAAACCC
4911 TAAACCC
1 TAAACCC
4918 TAAACCC
1 TAAACCC
4925 --AA-CC
1 TAAACCC
4929 TAAACCC
1 TAAACCC
4936 TAAACCC
1 TAAACCC
4943 TAAACCC
1 TAAACCC
4950 TAAACCC
1 TAAACCC
4957 T-AACCC
1 TAAACCC
4963 TAAACCC
1 TAAACCC
4970 TAAACCC
1 TAAACCC
4977 TAAACCC
1 TAAACCC
4984 TAAACCC
1 TAAACCC
4991 TAAACCC
1 TAAACCC
4998 TAAACCC
1 TAAACCC
5005 TAAACCC
1 TAAACCC
5012 T-AACCC
1 TAAACCC
5018 TAAACCC
1 TAAACCC
5025 TAAACCC
1 TAAACCC
5032 TAAACCC
1 TAAACCC
5039 TAAACCC
1 TAAACCC
*
5046 GAAACCC
1 TAAACCC
5053 TAAACCC
1 TAAACCC
5060 T-AACCC
1 TAAACCC
5066 TAAACCC
1 TAAACCC
5073 TAAACCC
1 TAAACCC
5080 T-AACCC
1 TAAACCC
5086 TAAACCC
1 TAAACCC
5093 TAAACCC
1 TAAACCC
5100 TAAACCC
1 TAAACCC
5107 T-AACCC
1 TAAACCC
5113 TAAACCC
1 TAAACCC
5120 TAAACCC
1 TAAACCC
5127 TAAACCC
1 TAAACCC
5134 T-AACCC
1 TAAACCC
5140 TAAACCC
1 TAAACCC
5147 TAAACCC
1 TAAACCC
5154 TAAACCC
1 TAAACCC
5161 TAAACCC
1 TAAACCC
5168 TAAACCC
1 TAAACCC
5175 TAAACCC
1 TAAACCC
5182 TAAACCC
1 TAAACCC
5189 TAAACCC
1 TAAACCC
5196 TAAACCC
1 TAAACCC
5203 TAAACCC
1 TAAACCC
5210 TAAACCC
1 TAAACCC
5217 TAAACCC
1 TAAACCC
5224 TAAACCC
1 TAAACCC
5231 TAAACCC
1 TAAACCC
5238 TAAACCC
1 TAAACCC
5245 TAAACCC
1 TAAACCC
5252 TAAACCC
1 TAAACCC
5259 TAAACCC
1 TAAACCC
5266 TAAACCC
1 TAAACCC
5273 TAAACCC
1 TAAACCC
5280 TAAACCC
1 TAAACCC
5287 TAAACCC
1 TAAACCC
5294 TAAACCC
1 TAAACCC
5301 TAAACCC
1 TAAACCC
5308 TAAACCC
1 TAAACCC
5315 TAAACCC
1 TAAACCC
5322 TAAACCC
1 TAAACCC
5329 TAAA-CC
1 TAAACCC
5335 TAAACCC
1 TAAACCC
5342 TAAACCC
1 TAAACCC
5349 TAAACCC
1 TAAACCC
5356 TAAACCC
1 TAAACCC
5363 TAAACCC
1 TAAACCC
5370 TAAACCC
1 TAAACCC
5377 TAAACCC
1 TAAACCC
5384 TAAACCC
1 TAAACCC
5391 T-AACCC
1 TAAACCC
5397 TAAACCC
1 TAAACCC
5404 TAAACCC
1 TAAACCC
5411 TAAACCC
1 TAAACCC
5418 TAAACCC
1 TAAACCC
5425 TAAACCC
1 TAAACCC
5432 TAAA-CC
1 TAAACCC
5438 TAAACCC
1 TAAACCC
5445 TAAACCC
1 TAAACCC
5452 TAAA-CC
1 TAAACCC
5458 TAAACCC
1 TAAACCC
5465 TAAACCC
1 TAAACCC
5472 TAAACCC
1 TAAACCC
5479 TAAACCC
1 TAAACCC
5486 TAAACCC
1 TAAACCC
5493 TAAACCC
1 TAAACCC
5500 TAAACCC
1 TAAACCC
5507 TAAACCC
1 TAAACCC
5514 TAAACCC
1 TAAACCC
5521 TAAACCC
1 TAAACCC
5528 TAAACCC
1 TAAACCC
5535 TAAACCC
1 TAAACCC
5542 TAAACCC
1 TAAACCC
5549 TAAACCC
1 TAAACCC
5556 TAAACCC
1 TAAACCC
5563 TAAACCC
1 TAAACCC
5570 T-AACCC
1 TAAACCC
5576 TAAACCC
1 TAAACCC
5583 TAAACCC
1 TAAACCC
5590 TAAACCC
1 TAAACCC
5597 TAAAAACCC
1 T--AAACCC
5606 TAAA-CC
1 TAAACCC
5612 TAAACCC
1 TAAACCC
5619 TAAACCC
1 TAAACCC
5626 T-AACCC
1 TAAACCC
5632 TAAA-CC
1 TAAACCC
5638 TAAACCC
1 TAAACCC
5645 TAAACCC
1 TAAACCC
5652 TAAACCC
1 TAAACCC
5659 TAAACCC
1 TAAACCC
5666 TAAACCC
1 TAAACCC
5673 TAAACCC
1 TAAACCC
5680 TAAACCC
1 TAAACCC
5687 TAAACCC
1 TAAACCC
5694 TAAACCC
1 TAAACCC
5701 TAAACCC
1 TAAACCC
5708 TAAACCC
1 TAAACCC
5715 TAAACCC
1 TAAACCC
5722 TAAACCC
1 TAAACCC
5729 TAAACCC
1 TAAACCC
5736 TAAACCC
1 TAAACCC
5743 TAAACCC
1 TAAACCC
5750 TAAACCC
1 TAAACCC
5757 TAAACCC
1 TAAACCC
5764 TAAACCC
1 TAAACCC
5771 TAAACCC
1 TAAACCC
5778 TAAACCC
1 TAAACCC
5785 TAAACCC
1 TAAACCC
5792 TAAACCC
1 TAAACCC
5799 TAAACCC
1 TAAACCC
5806 TAAACCC
1 TAAACCC
5813 TAAACCC
1 TAAACCC
5820 TAAACCC
1 TAAACCC
5827 TAAACCC
1 TAAACCC
5834 TAAACCC
1 TAAACCC
5841 T-AACCC
1 TAAACCC
5847 TAAACCC
1 TAAACCC
5854 TAAA-CC
1 TAAACCC
5860 TAAACCC
1 TAAACCC
5867 TAAACCC
1 TAAACCC
5874 TAAACCC
1 TAAACCC
5881 TAAACCC
1 TAAACCC
5888 TAAA-CC
1 TAAACCC
5894 TAAACCC
1 TAAACCC
5901 TAAACCC
1 TAAACCC
5908 TAAACCC
1 TAAACCC
5915 TAAACCC
1 TAAACCC
5922 TAAACCC
1 TAAACCC
5929 TAAACCC
1 TAAACCC
5936 TAAACCC
1 TAAACCC
5943 TAAACCC
1 TAAACCC
5950 TAAACCC
1 TAAACCC
5957 TAAACCC
1 TAAACCC
5964 TAAACCC
1 TAAACCC
5971 -AAACCC
1 TAAACCC
5977 T-AACCC
1 TAAACCC
5983 TAAACCC
1 TAAACCC
5990 TAAACCC
1 TAAACCC
5997 TAAACCC
1 TAAACCC
6004 TAAA-CC
1 TAAACCC
6010 TAAACCC
1 TAAACCC
6017 TAAACCC
1 TAAACCC
6024 TAAACCC
1 TAAACCC
6031 TAAACCC
1 TAAACCC
6038 TAAACCC
1 TAAACCC
6045 TAAACCC
1 TAAACCC
6052 TAAACCC
1 TAAACCC
6059 T-AACCC
1 TAAACCC
6065 TAAACCC
1 TAAACCC
6072 TAAACCC
1 TAAACCC
6079 TAAACCC
1 TAAACCC
6086 TAAACCC
1 TAAACCC
6093 -AAACCC
1 TAAACCC
6099 TAAACCC
1 TAAACCC
6106 TAAACCC
1 TAAACCC
6113 TAAACCC
1 TAAACCC
6120 TAAACCC
1 TAAACCC
6127 TAAACCC
1 TAAACCC
6134 TAAACCC
1 TAAACCC
6141 TAAACCC
1 TAAACCC
6148 T-AACCC
1 TAAACCC
6154 TAAACCC
1 TAAACCC
6161 TAAACCC
1 TAAACCC
6168 TAAACCC
1 TAAACCC
6175 TAAACCC
1 TAAACCC
6182 TAAA-CC
1 TAAACCC
6188 TAAACCC
1 TAAACCC
6195 T-AACCC
1 TAAACCC
6201 TAAACCC
1 TAAACCC
6208 TAAACCC
1 TAAACCC
6215 -AAACCC
1 TAAACCC
6221 T-AACCC
1 TAAACCC
6227 TAAACCC
1 TAAACCC
6234 TAAACCC
1 TAAACCC
6241 TAAACCC
1 TAAACCC
6248 TAAACCC
1 TAAACCC
6255 TAAACCC
1 TAAACCC
6262 TAAACCC
1 TAAACCC
6269 TAAACCC
1 TAAACCC
6276 TAAACCC
1 TAAACCC
6283 TAAAACCC
1 T-AAACCC
6291 TAAACCC
1 TAAACCC
6298 TAAACCC
1 TAAACCC
6305 TAAACCC
1 TAAACCC
6312 TAAACCC
1 TAAACCC
6319 TAAA-CC
1 TAAACCC
6325 TAAACCC
1 TAAACCC
6332 TAAACCC
1 TAAACCC
6339 TAAACCC
1 TAAACCC
6346 TAAA-CC
1 TAAACCC
6352 TAAACCC
1 TAAACCC
6359 TAAACCC
1 TAAACCC
6366 TAAACCC
1 TAAACCC
6373 TAAACCC
1 TAAACCC
6380 TAAACCC
1 TAAACCC
6387 TAAACCC
1 TAAACCC
6394 TAAACCC
1 TAAACCC
6401 TAAACCC
1 TAAACCC
6408 TAAACCC
1 TAAACCC
*
6415 -CAACCC
1 TAAACCC
6421 TAAACCC
1 TAAACCC
6428 TAAACCC
1 TAAACCC
6435 TAAACCC
1 TAAACCC
6442 TAAACCC
1 TAAACCC
6449 TAAACCC
1 TAAACCC
6456 TAAACCC
1 TAAACCC
6463 TAAACCC
1 TAAACCC
6470 TAAACCC
1 TAAACCC
6477 -AAACCC
1 TAAACCC
6483 TAAACCC
1 TAAACCC
6490 TAAACCC
1 TAAACCC
6497 TAAACCC
1 TAAACCC
6504 TAAACCC
1 TAAACCC
6511 TAAACCC
1 TAAACCC
6518 TAAACCC
1 TAAACCC
6525 TAAACCC
1 TAAACCC
6532 TAAACCC
1 TAAACCC
6539 TAAA-CC
1 TAAACCC
6545 TAAACCC
1 TAAACCC
6552 TAAACCC
1 TAAACCC
6559 TAAACCC
1 TAAACCC
6566 TAAACCC
1 TAAACCC
6573 TAAACCC
1 TAAACCC
6580 TAAACCC
1 TAAACCC
6587 TAAACCC
1 TAAACCC
6594 TAAACCC
1 TAAACCC
6601 TAAACCC
1 TAAACCC
6608 TAAACCC
1 TAAACCC
6615 TAAACCC
1 TAAACCC
6622 TAAACCC
1 TAAACCC
6629 TAAACCC
1 TAAACCC
6636 TAAACCC
1 TAAACCC
6643 TAAA-CC
1 TAAACCC
6649 TAAACCC
1 TAAACCC
6656 TAAACCC
1 TAAACCC
6663 T-AACCC
1 TAAACCC
6669 TAAACCC
1 TAAACCC
6676 TAAACCC
1 TAAACCC
6683 TAAACCC
1 TAAACCC
6690 TAAACCC
1 TAAACCC
6697 TAAACCC
1 TAAACCC
6704 TAAACCC
1 TAAACCC
6711 TAAACCC
1 TAAACCC
6718 TAAACCC
1 TAAACCC
6725 TAAACCC
1 TAAACCC
6732 TAAACCC
1 TAAACCC
6739 TAAA-CC
1 TAAACCC
6745 T--ACCC
1 TAAACCC
6750 TAAACCC
1 TAAACCC
6757 TAAACCC
1 TAAACCC
6764 TAAACCC
1 TAAACCC
6771 TAAAAACCC
1 T--AAACCC
6780 TAAACCC
1 TAAACCC
6787 TAAACCC
1 TAAACCC
6794 TAAACCC
1 TAAACCC
6801 TAAACCC
1 TAAACCC
6808 TAAACCC
1 TAAACCC
6815 TAAACCC
1 TAAACCC
6822 TAAACCC
1 TAAACCC
6829 TAAACCC
1 TAAACCC
6836 TAAACCC
1 TAAACCC
6843 TAAACCC
1 TAAACCC
6850 TAAACCC
1 TAAACCC
*
6857 GAAACCC
1 TAAACCC
6864 TAAACCC
1 TAAACCC
6871 TAAACCC
1 TAAACCC
6878 TAAA-CC
1 TAAACCC
6884 TAAACCC
1 TAAACCC
6891 TAAACCC
1 TAAACCC
6898 TAAACCC
1 TAAACCC
6905 TAAAACCC
1 T-AAACCC
6913 TAAACCC
1 TAAACCC
6920 TAAACCC
1 TAAACCC
6927 T-AACCC
1 TAAACCC
6933 TAAA-CC
1 TAAACCC
6939 TAAACCC
1 TAAACCC
6946 TAAACCC
1 TAAACCC
6953 TAAACCC
1 TAAACCC
6960 TAAACCC
1 TAAACCC
6967 TAAACCC
1 TAAACCC
6974 TAAACCC
1 TAAACCC
6981 TAAACCC
1 TAAACCC
6988 TAAACCC
1 TAAACCC
6995 TAAACCC
1 TAAACCC
7002 T-AACCC
1 TAAACCC
7008 TAAA-CC
1 TAAACCC
7014 TAAACCC
1 TAAACCC
7021 TAAACCC
1 TAAACCC
7028 TAAACCC
1 TAAACCC
7035 TAAACCC
1 TAAACCC
7042 TAAACCC
1 TAAACCC
7049 TAAACCC
1 TAAACCC
7056 TAAAACCC
1 T-AAACCC
7064 TAAACCC
1 TAAACCC
7071 TAAACCC
1 TAAACCC
7078 TAAACCC
1 TAAACCC
7085 TAAACCC
1 TAAACCC
7092 TAAACCC
1 TAAACCC
7099 TAAACCC
1 TAAACCC
7106 TAAACCC
1 TAAACCC
7113 TAAACCC
1 TAAACCC
7120 TAAACCC
1 TAAACCC
7127 TAAACCC
1 TAAACCC
7134 TAAACCC
1 TAAACCC
7141 TAAACCC
1 TAAACCC
7148 TAAACCC
1 TAAACCC
7155 TAAACCC
1 TAAACCC
7162 TAAACCC
1 TAAACCC
7169 T-AACCC
1 TAAACCC
7175 TAAACCC
1 TAAACCC
7182 TAAACCC
1 TAAACCC
7189 T-AACCC
1 TAAACCC
7195 -AAACCC
1 TAAACCC
7201 T--ACCC
1 TAAACCC
7206 T-AACCC
1 TAAACCC
7212 TAAACCC
1 TAAACCC
7219 TAAACCC
1 TAAACCC
7226 TAAACCC
1 TAAACCC
7233 TAAACCC
1 TAAACCC
7240 TAAACCC
1 TAAACCC
7247 T-AACCC
1 TAAACCC
7253 TAAACCC
1 TAAACCC
7260 TAAACCC
1 TAAACCC
7267 TAAACCC
1 TAAACCC
7274 TAAACCC
1 TAAACCC
7281 TAAACCC
1 TAAACCC
7288 TAAACCC
1 TAAACCC
7295 T-AA-CC
1 TAAACCC
7300 TAAACCC
1 TAAACCC
7307 TAAACCC
1 TAAACCC
7314 TAAACCC
1 TAAACCC
7321 TAAACCC
1 TAAACCC
7328 TAAACCC
1 TAAACCC
7335 TAAACCC
1 TAAACCC
7342 TAAACCC
1 TAAACCC
7349 TAAACCC
1 TAAACCC
7356 TAAACCC
1 TAAACCC
7363 TAAACCC
1 TAAACCC
7370 TAAACCC
1 TAAACCC
7377 TAAACCC
1 TAAACCC
7384 TAAA-CC
1 TAAACCC
7390 TAAACCC
1 TAAACCC
7397 TAAACCC
1 TAAACCC
7404 T-AACCC
1 TAAACCC
7410 TAAACCC
1 TAAACCC
7417 TAAA-CC
1 TAAACCC
7423 TAAACCC
1 TAAACCC
7430 TAAACCC
1 TAAACCC
7437 TAAACCC
1 TAAACCC
7444 TAAACCC
1 TAAACCC
7451 TAAACCC
1 TAAACCC
7458 TAAACCC
1 TAAACCC
7465 TAAACCC
1 TAAACCC
7472 TAAACCCCC
1 TAAA--CCC
7481 T-AACCC
1 TAAACCC
7487 TAAACCC
1 TAAACCC
7494 TAAACCC
1 TAAACCC
7501 TAAACCC
1 TAAACCC
7508 TAAACCC
1 TAAACCC
7515 TAAACCC
1 TAAACCC
7522 TAAACCC
1 TAAACCC
7529 TAAACCC
1 TAAACCC
7536 CCTACCCCCC
Statistics
Matches: 7194, Mismatches: 50, Indels: 568
0.92 0.01 0.07
Matches are distributed among these distances:
4 6 0.00
5 141 0.02
6 1186 0.16
7 5711 0.79
8 95 0.01
9 45 0.01
10 10 0.00
ACGTcount: A:0.43, C:0.43, G:0.00, T:0.14
Consensus pattern (7 bp):
TAAACCC
Found at i:7575 original size:7 final size:7
Alignment explanation
Indices: 7565--7668 Score: 180
Period size: 7 Copynumber: 15.4 Consensus size: 7
7555 ACACCCTACA
7565 CCCCGAG
1 CCCCGAG
7572 CCCCGAG
1 CCCCGAG
7579 CCCCGAG
1 CCCCGAG
7586 CCCCGAG
1 CCCCGAG
7593 -CCCGAG
1 CCCCGAG
7599 CCCCGAG
1 CCCCGAG
7606 -CCCGAG
1 CCCCGAG
7612 -CCCGAG
1 CCCCGAG
7618 CCCCGAG
1 CCCCGAG
7625 CCCCGAG
1 CCCCGAG
7632 CCCCGAG
1 CCCCGAG
7639 -CCCGAG
1 CCCCGAG
7645 CCCCGAG
1 CCCCGAG
7652 CCCCGAG
1 CCCCGAG
7659 CCCCGAG
1 CCCCGAG
7666 CCC
1 CCC
7669 TAGAAGTTCG
Statistics
Matches: 94, Mismatches: 0, Indels: 6
0.94 0.00 0.06
Matches are distributed among these distances:
6 24 0.26
7 70 0.74
ACGTcount: A:0.14, C:0.57, G:0.29, T:0.00
Consensus pattern (7 bp):
CCCCGAG
Found at i:7596 original size:27 final size:27
Alignment explanation
Indices: 7567--7668 Score: 181
Period size: 27 Copynumber: 3.8 Consensus size: 27
7557 ACCCTACACC
7567 CCGAGCCCCGAGCCCCGAGCCCCGAG-C
1 CCGAGCCCCGAGCCCCGAG-CCCGAGCC
7594 CCGAGCCCCGAG-CCCGAGCCCGAGCC
1 CCGAGCCCCGAGCCCCGAGCCCGAGCC
7620 CCGAGCCCCGAGCCCCGAGCCCGAGCC
1 CCGAGCCCCGAGCCCCGAGCCCGAGCC
7647 CCGAGCCCCGAGCCCCGAGCCC
1 CCGAGCCCCGAGCCCCGAGCCC
7669 TAGAAGTTCG
Statistics
Matches: 73, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
25 6 0.08
26 19 0.26
27 48 0.66
ACGTcount: A:0.15, C:0.56, G:0.29, T:0.00
Consensus pattern (27 bp):
CCGAGCCCCGAGCCCCGAGCCCGAGCC
Found at i:8536 original size:14 final size:14
Alignment explanation
Indices: 8369--8557 Score: 207
Period size: 14 Copynumber: 13.5 Consensus size: 14
8359 GAAAACCCTA
* **
8369 AACCCTAAACCCTA
1 AACCCCAAACCCCG
* * *
8383 AACCCTAAACCTCA
1 AACCCCAAACCCCG
*
8397 AACCCCAAACCCCA
1 AACCCCAAACCCCG
*
8411 AACCCCAAACCCCA
1 AACCCCAAACCCCG
*
8425 AACCCCAAACCCCA
1 AACCCCAAACCCCG
*
8439 AACCCCAAACCCCA
1 AACCCCAAACCCCG
*
8453 AACCCCAAACCCCA
1 AACCCCAAACCCCG
8467 AACCCCAAACCCCG
1 AACCCCAAACCCCG
*
8481 AACCCCGAACCCCG
1 AACCCCAAACCCCG
*
8495 AACCCCGAACCCCG
1 AACCCCAAACCCCG
*
8509 AACCCCGAACCCCG
1 AACCCCAAACCCCG
*
8523 AACCCCGAACCCCG
1 AACCCCAAACCCCG
* * *
8537 AGCCCCGAGCCCCG
1 AACCCCAAACCCCG
*
8551 AGCCCCA
1 AACCCCA
8558 GGCCCCAGGC
Statistics
Matches: 166, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 166 1.00
ACGTcount: A:0.35, C:0.55, G:0.07, T:0.02
Consensus pattern (14 bp):
AACCCCAAACCCCG
Found at i:8537 original size:7 final size:7
Alignment explanation
Indices: 8361--8535 Score: 233
Period size: 7 Copynumber: 25.0 Consensus size: 7
8351 AAAGATATGA
*
8361 AAACCCT
1 AAACCCC
*
8368 AAACCCT
1 AAACCCC
*
8375 AAACCCT
1 AAACCCC
*
8382 AAACCCT
1 AAACCCC
*
8389 AAACCTC
1 AAACCCC
8396 AAACCCC
1 AAACCCC
8403 AAACCCC
1 AAACCCC
8410 AAACCCC
1 AAACCCC
8417 AAACCCC
1 AAACCCC
8424 AAACCCC
1 AAACCCC
8431 AAACCCC
1 AAACCCC
8438 AAACCCC
1 AAACCCC
8445 AAACCCC
1 AAACCCC
8452 AAACCCC
1 AAACCCC
8459 AAACCCC
1 AAACCCC
8466 AAACCCC
1 AAACCCC
8473 AAACCCC
1 AAACCCC
*
8480 GAACCCC
1 AAACCCC
*
8487 GAACCCC
1 AAACCCC
*
8494 GAACCCC
1 AAACCCC
*
8501 GAACCCC
1 AAACCCC
*
8508 GAACCCC
1 AAACCCC
*
8515 GAACCCC
1 AAACCCC
*
8522 GAACCCC
1 AAACCCC
*
8529 GAACCCC
1 AAACCCC
8536 GAGCCCCGAG
Statistics
Matches: 164, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
7 164 1.00
ACGTcount: A:0.38, C:0.54, G:0.05, T:0.03
Consensus pattern (7 bp):
AAACCCC
Found at i:8542 original size:7 final size:7
Alignment explanation
Indices: 8397--8556 Score: 194
Period size: 7 Copynumber: 22.9 Consensus size: 7
8387 CTAAACCTCA
*
8397 AACCCCA
1 AACCCCG
*
8404 AACCCCA
1 AACCCCG
*
8411 AACCCCA
1 AACCCCG
*
8418 AACCCCA
1 AACCCCG
*
8425 AACCCCA
1 AACCCCG
*
8432 AACCCCA
1 AACCCCG
*
8439 AACCCCA
1 AACCCCG
*
8446 AACCCCA
1 AACCCCG
*
8453 AACCCCA
1 AACCCCG
*
8460 AACCCCA
1 AACCCCG
*
8467 AACCCCA
1 AACCCCG
8474 AACCCCG
1 AACCCCG
8481 AACCCCG
1 AACCCCG
8488 AACCCCG
1 AACCCCG
8495 AACCCCG
1 AACCCCG
8502 AACCCCG
1 AACCCCG
8509 AACCCCG
1 AACCCCG
8516 AACCCCG
1 AACCCCG
8523 AACCCCG
1 AACCCCG
8530 AACCCCG
1 AACCCCG
*
8537 AGCCCCG
1 AACCCCG
*
8544 AGCCCCG
1 AACCCCG
*
8551 AGCCCC
1 AACCCC
8557 AGGCCCCAGG
Statistics
Matches: 151, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
7 151 1.00
ACGTcount: A:0.34, C:0.57, G:0.09, T:0.00
Consensus pattern (7 bp):
AACCCCG
Found at i:8562 original size:7 final size:7
Alignment explanation
Indices: 8552--8604 Score: 106
Period size: 7 Copynumber: 7.6 Consensus size: 7
8542 CGAGCCCCGA
8552 GCCCCAG
1 GCCCCAG
8559 GCCCCAG
1 GCCCCAG
8566 GCCCCAG
1 GCCCCAG
8573 GCCCCAG
1 GCCCCAG
8580 GCCCCAG
1 GCCCCAG
8587 GCCCCAG
1 GCCCCAG
8594 GCCCCAG
1 GCCCCAG
8601 GCCC
1 GCCC
8605 TAAGCCCTAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 46 1.00
ACGTcount: A:0.13, C:0.58, G:0.28, T:0.00
Consensus pattern (7 bp):
GCCCCAG
Found at i:8611 original size:7 final size:7
Alignment explanation
Indices: 8601--8627 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
8591 CAGGCCCCAG
8601 GCCCTAA
1 GCCCTAA
8608 GCCCTAA
1 GCCCTAA
8615 GCCCTAA
1 GCCCTAA
8622 GCCCTA
1 GCCCTA
8628 GAAGTTCGGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.26, C:0.44, G:0.15, T:0.15
Consensus pattern (7 bp):
GCCCTAA
Found at i:8611 original size:14 final size:14
Alignment explanation
Indices: 8532--8625 Score: 91
Period size: 14 Copynumber: 6.7 Consensus size: 14
8522 GAACCCCGAA
*
8532 CCCCGAGCCCC-GAG
1 CCCCAAGCCCCAG-G
*
8546 CCCCGAGCCCCAGG
1 CCCCAAGCCCCAGG
*
8560 CCCCAGGCCCCAGG
1 CCCCAAGCCCCAGG
*
8574 CCCCAGGCCCCAGG
1 CCCCAAGCCCCAGG
*
8588 CCCCAGGCCCCAGG
1 CCCCAAGCCCCAGG
* * *
8602 CCCTAAGCCCTAAG
1 CCCCAAGCCCCAGG
*
8616 CCCTAAGCCC
1 CCCCAAGCCC
8626 TAGAAGTTCG
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
14 72 0.99
15 1 0.01
ACGTcount: A:0.17, C:0.55, G:0.24, T:0.03
Consensus pattern (14 bp):
CCCCAAGCCCCAGG
Found at i:8611 original size:21 final size:21
Alignment explanation
Indices: 8538--8611 Score: 96
Period size: 21 Copynumber: 3.5 Consensus size: 21
8528 CGAACCCCGA
*
8538 GCCCCGAGCCCC-GAGCCCCAG
1 GCCCCAAGCCCCAG-GCCCCAG
*
8559 GCCCCAGGCCCCAGGCCCCAG
1 GCCCCAAGCCCCAGGCCCCAG
*
8580 GCCCCAGGCCCCAGGCCCCAG
1 GCCCCAAGCCCCAGGCCCCAG
*
8601 GCCCTAAGCCC
1 GCCCCAAGCCC
8612 TAAGCCCTAA
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
21 47 0.98
22 1 0.02
ACGTcount: A:0.15, C:0.57, G:0.27, T:0.01
Consensus pattern (21 bp):
GCCCCAAGCCCCAGGCCCCAG
Found at i:9258 original size:957 final size:957
Alignment explanation
Indices: 7405--9313 Score: 3343
Period size: 957 Copynumber: 2.0 Consensus size: 957
7395 CCTAAACCCT
* * * *
7405 AACCCTAAACCCTAAACCTAAACCCTAAACCCTAAACCCTAAACCCTAAACCCTAAACCCTAAAC
1 AACCCTAAACCCTAAACCTAAACCCTAAACCCTAAACCCCAAACCCCAAACCCCAAACCCCAAAC
* * * * * * * * *
7470 CCTAAACCCCCTAACCCTAAACCCTAAACCCTAAACCCTAAACCCTAAACCCTAAACCCTAAACC
66 CCCAAACCCCCAAACCCCAAACCCCAAACCCCAAACCCCAAACCCCAAACCCCAAACCCCAAACC
* * * * * * * *
7535 CCCTACCCCCCTACCCCCCTACACCCTACACCCCGAGCCCCGAGCCCCGAGCCCCGAGCCCGAGC
131 CCCGACACCCCGAACCCCCAACACCCGACACCCCGAACCCCGAACCCCGAGCCCCGAGCCCGAGC
* * * * * *
7600 CCCGAGCCCGAGCCCGAGCCCCGAGCCCCGAGCCCCGAGCCCGAGCCCCGAGCCCCGAGCCCCGA
196 CCCGAGCCCCAGCCCCAGCCCCGAGCCCCGAGCCCCGAGCCCCAGCCCCAAGCCCCAAGCCCCAA
7665 GCCCTAGAAGTTCGGCAATGTGCTTACGTCCTCGGTGCCTAGGCGGCGCTAGAAGTTTTATTCAA
261 GCCCTAGAAGTTCGGCAATGTGCTTACGTCCTCGGTGCCTAGGCGGCGCTAGAAGTTTTATTCAA
*
7730 TTATATTTTAGGTCTAGGTTACATCTCTATTTATAATAGAAAACCCTGGTACATAATTCTCCACA
326 TGATATTTTAGGTCTAGGTTACATCTCTATTTATAATAGAAAACCCTGGTACATAATTCTCCACA
7795 TTGGCGAATATTCGCTCCATCTCCTGTCCTCTTTATTGGTATATTTATGAGCCATACCTAACAGA
391 TTGGCGAATATTCGCTCCATCTCCTGTCCTCTTTATTGGTATATTTATGAGCCATACCTAACAGA
7860 CTAGAAATGCACAAACAACGTTATAAGAAGGGAAATATGCATATATAAATATGTGTATGAAAGTA
456 CTAGAAATGCACAAACAACGTTATAAGAAGGGAAATATGCATATATAAATATGTGTATGAAAGTA
7925 ATGGAAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGGTGATAGTGGTT
521 ATGGAAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGGTGATAGTGGTT
7990 GAATGGATCTAACGAAAATGGTGAAGGATGTTTGTAGTTGGCGTGGAGAATGATAGTAATTTAAA
586 GAATGGATCTAACGAAAATGGTGAAGGATGTTTGTAGTTGGCGTGGAGAATGATAGTAATTTAAA
8055 GGATGGATTGTGACCCTCTAACTATATATGAGTTAGGGACCAACAATATAATAAAGAGGGAATCG
651 GGATGGATTGTGACCCTCTAACTATATATGAGTTAGGGACCAACAATATAATAAAGAGGGAATCG
8120 AAGTGATAGAGGGTGGAACGTGACCCACTAGCTATAGTAGAGCTAGAAACCAACACTATAACAAG
716 AAGTGATAGAGGGTGGAACGTGACCCACTAGCTATAGTAGAGCTAGAAACCAACACTATAACAAG
8185 ATGAAATGGATGAAGGCTTCAAGACCGACAAGAAACCGATAGAGTTCTAATCCAAGAACTAAAAT
781 ATGAAATGGATGAAGGCTTCAAGACCGACAAGAAACCGATAGAGTTCTAATCCAAGAACTAAAAT
8250 GAAAGCAATCTTTCAAAGTATTTTCATAAATCAAATTGTGTGTACAAATGATACCAAAGGTGCCT
846 GAAAGCAATCTTTCAAAGTATTTTCATAAATCAAATTGTGTGTACAAATGATACCAAAGGTGCCT
8315 ATTTATAGTATTTCTAAGAAGATATGAAAAGACTCTAAAGATATGAA
911 ATTTATAGTATTTCTAAGAAGATATGAAAAGACTCTAAAGATATGAA
8362 AACCCTAAACCCTAAACCCTAAACCCTAAA-CCTCAAACCCCAAACCCCAAACCCCAAACCCCAA
1 AACCCTAAACCCTAAA-CCTAAACCCTAAACCCT-AAACCCCAAACCCCAAACCCCAAACCCCAA
* *
8426 ACCCCAAA-CCCCAAACCCCAAACCCCAAACCCCAAACCCCAAACCCCAAACCCCGAACCCCGAA
64 ACCCCAAACCCCCAAACCCCAAACCCCAAACCCCAAACCCCAAACCCCAAACCCCAAACCCCAAA
*
8490 -CCCCGA-ACCCCGAACCCCGAAC-CCCGA-ACCCCGAACCCCGAACCCCGAGCCCCGAGCCCCG
129 CCCCCGACACCCCGAACCCCCAACACCCGACACCCCGAACCCCGAACCCCGAGCCCCGAG-CCCG
*
8551 AGCCCC-AGGCCCCAGGCCCCAGGCCCC-AGGCCCC-AGGCCCC-AGGCCCCAGGCCCTAAGCCC
193 AGCCCCGA-GCCCCA-GCCCCA-GCCCCGA-GCCCCGA-GCCCCGA-GCCCCA-GCCCCAAGCCC
* *
8612 TAAGCCCTAAGCCCTAGAAGTTCGGCAATGTGCTTACGTCCTCGGTGCCTAGGCGGCGCTAGAAG
251 CAAGCCCCAAGCCCTAGAAGTTCGGCAATGTGCTTACGTCCTCGGTGCCTAGGCGGCGCTAGAAG
8677 TTTTATTCAATGATATTTTAGGTCTAGGTTACATCTCTATTTATAATAGAAAACCCTGGTACATA
316 TTTTATTCAATGATATTTTAGGTCTAGGTTACATCTCTATTTATAATAGAAAACCCTGGTACATA
*
8742 ATTCTCCACCTTGGCGAATATTCGCTCCATCTCCTGTCCTCTTTATTGGTATATTTATGAGCCAT
381 ATTCTCCACATTGGCGAATATTCGCTCCATCTCCTGTCCTCTTTATTGGTATATTTATGAGCCAT
8807 ACCTAACAGACTAGAAATGCACAAACAACGTTATAAGAAGGGAAATATGCATATATAAATATGTG
446 ACCTAACAGACTAGAAATGCACAAACAACGTTATAAGAAGGGAAATATGCATATATAAATATGTG
8872 TATGAAAGTAATGGAAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGGT
511 TATGAAAGTAATGGAAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGGT
8937 GATAGTGGTTGAATGGATCTAACGAAAATGGTGAAGGATGTTTGTAGTTGGCGTGGAGAATGATA
576 GATAGTGGTTGAATGGATCTAACGAAAATGGTGAAGGATGTTTGTAGTTGGCGTGGAGAATGATA
9002 GTAATTTAAAGGATGGATTGTGACCCTCTAACTATATATGAGTTAGGGACCAACAATATAATAAA
641 GTAATTTAAAGGATGGATTGTGACCCTCTAACTATATATGAGTTAGGGACCAACAATATAATAAA
9067 GAGGGAATCGAAGTGATAGAGGGTGGAACGTGACCCACTAGCTATAGTAGAGCTAGAAACCAACA
706 GAGGGAATCGAAGTGATAGAGGGTGGAACGTGACCCACTAGCTATAGTAGAGCTAGAAACCAACA
9132 CTATAACAAGATGAAATGGATGAAGGCTTCAAGACCGACAAGAAACCGATAGAGTTCTAATCCAA
771 CTATAACAAGATGAAATGGATGAAGGCTTCAAGACCGACAAGAAACCGATAGAGTTCTAATCCAA
9197 GAACTAAAATGAAAGCAATCTTTCAAAGTATTTTCATAAATCAAATTGTGTGTACAAATGATACC
836 GAACTAAAATGAAAGCAATCTTTCAAAGTATTTTCATAAATCAAATTGTGTGTACAAATGATACC
9262 AAAGGTGCCTATTTATAGTATTTCTAAGAAGATATGAAAAGACTCTAAAGAT
901 AAAGGTGCCTATTTATAGTATTTCTAAGAAGATATGAAAAGACTCTAAAGAT
9314 GATAACATTC
Statistics
Matches: 907, Mismatches: 35, Indels: 20
0.94 0.04 0.02
Matches are distributed among these distances:
953 28 0.03
954 19 0.02
955 19 0.02
956 25 0.03
957 770 0.85
958 46 0.05
ACGTcount: A:0.34, C:0.25, G:0.19, T:0.22
Consensus pattern (957 bp):
AACCCTAAACCCTAAACCTAAACCCTAAACCCTAAACCCCAAACCCCAAACCCCAAACCCCAAAC
CCCAAACCCCCAAACCCCAAACCCCAAACCCCAAACCCCAAACCCCAAACCCCAAACCCCAAACC
CCCGACACCCCGAACCCCCAACACCCGACACCCCGAACCCCGAACCCCGAGCCCCGAGCCCGAGC
CCCGAGCCCCAGCCCCAGCCCCGAGCCCCGAGCCCCGAGCCCCAGCCCCAAGCCCCAAGCCCCAA
GCCCTAGAAGTTCGGCAATGTGCTTACGTCCTCGGTGCCTAGGCGGCGCTAGAAGTTTTATTCAA
TGATATTTTAGGTCTAGGTTACATCTCTATTTATAATAGAAAACCCTGGTACATAATTCTCCACA
TTGGCGAATATTCGCTCCATCTCCTGTCCTCTTTATTGGTATATTTATGAGCCATACCTAACAGA
CTAGAAATGCACAAACAACGTTATAAGAAGGGAAATATGCATATATAAATATGTGTATGAAAGTA
ATGGAAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGGTGATAGTGGTT
GAATGGATCTAACGAAAATGGTGAAGGATGTTTGTAGTTGGCGTGGAGAATGATAGTAATTTAAA
GGATGGATTGTGACCCTCTAACTATATATGAGTTAGGGACCAACAATATAATAAAGAGGGAATCG
AAGTGATAGAGGGTGGAACGTGACCCACTAGCTATAGTAGAGCTAGAAACCAACACTATAACAAG
ATGAAATGGATGAAGGCTTCAAGACCGACAAGAAACCGATAGAGTTCTAATCCAAGAACTAAAAT
GAAAGCAATCTTTCAAAGTATTTTCATAAATCAAATTGTGTGTACAAATGATACCAAAGGTGCCT
ATTTATAGTATTTCTAAGAAGATATGAAAAGACTCTAAAGATATGAA
Found at i:9766 original size:25 final size:25
Alignment explanation
Indices: 9738--9789 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
9728 ATATGAACAA
9738 CCCTTGGTTTGAATGATTAAATCAG
1 CCCTTGGTTTGAATGATTAAATCAG
*
9763 CCCTTGGTTTGGATGATTAAATCAG
1 CCCTTGGTTTGAATGATTAAATCAG
9788 CC
1 CC
9790 TTGAATGCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.35
Consensus pattern (25 bp):
CCCTTGGTTTGAATGATTAAATCAG
Found at i:10214 original size:17 final size:17
Alignment explanation
Indices: 10192--10263 Score: 76
Period size: 17 Copynumber: 4.2 Consensus size: 17
10182 AATTAAGAGT
10192 TAGTTT-ATTAAATGAAC
1 TAGTTTAATT-AATGAAC
* *
10209 TAGTTTGATGAATGAAC
1 TAGTTTAATTAATGAAC
10226 TAGTTTAATTAATGAAC
1 TAGTTTAATTAATGAAC
*
10243 TAACTTT-ATTCAATGAAC
1 T-AGTTTAATT-AATGAAC
10261 TAG
1 TAG
10264 ATGCATGAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
17 33 0.70
18 14 0.30
ACGTcount: A:0.39, C:0.08, G:0.14, T:0.39
Consensus pattern (17 bp):
TAGTTTAATTAATGAAC
Found at i:10257 original size:18 final size:18
Alignment explanation
Indices: 10219--10262 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
10209 TAGTTTGATG
*
10219 AATGAACT-AGTTTAATT
1 AATGAACTAACTTTAATT
10236 AATGAACTAACTTT-ATT
1 AATGAACTAACTTTAATT
10253 CAATGAACTA
1 -AATGAACTA
10263 GATGCATGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 11 0.46
18 13 0.54
ACGTcount: A:0.43, C:0.11, G:0.09, T:0.36
Consensus pattern (18 bp):
AATGAACTAACTTTAATT
Found at i:11822 original size:13 final size:13
Alignment explanation
Indices: 11804--11833 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
11794 GTCACAACCC
11804 GACCCGACCCGTT
1 GACCCGACCCGTT
11817 GACCCGACCCGTT
1 GACCCGACCCGTT
11830 GACC
1 GACC
11834 GTTGACCGGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.17, C:0.47, G:0.23, T:0.13
Consensus pattern (13 bp):
GACCCGACCCGTT
Found at i:14338 original size:24 final size:24
Alignment explanation
Indices: 14311--14398 Score: 131
Period size: 24 Copynumber: 3.7 Consensus size: 24
14301 TTCTATTATA
*
14311 ATACCTGACCTGGATTCTGATCGG
1 ATACTTGACCTGGATTCTGATCGG
* *
14335 ATACTTGACCTGGATTCTGATTGA
1 ATACTTGACCTGGATTCTGATCGG
* *
14359 ATACTTGACCTGGATTTTGATCTG
1 ATACTTGACCTGGATTCTGATCGG
14383 ATACTTGACCTGGATT
1 ATACTTGACCTGGATT
14399 ATGTTATGAT
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 57 1.00
ACGTcount: A:0.23, C:0.19, G:0.22, T:0.36
Consensus pattern (24 bp):
ATACTTGACCTGGATTCTGATCGG
Found at i:14408 original size:24 final size:24
Alignment explanation
Indices: 14311--14408 Score: 117
Period size: 24 Copynumber: 4.1 Consensus size: 24
14301 TTCTATTATA
* **
14311 ATACCTGACCTGGATTCTGATCGG
1 ATACTTGACCTGGATTCTGATATG
14335 ATACTTGACCTGGATTCTGAT-TG
1 ATACTTGACCTGGATTCTGATATG
* *
14358 AATACTTGACCTGGATTTTGATCTG
1 -ATACTTGACCTGGATTCTGATATG
* *
14383 ATACTTGACCTGGATTATGTTATG
1 ATACTTGACCTGGATTCTGATATG
14407 AT
1 AT
14409 TTTTTATATA
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
23 1 0.02
24 63 0.95
25 2 0.03
ACGTcount: A:0.23, C:0.17, G:0.21, T:0.38
Consensus pattern (24 bp):
ATACTTGACCTGGATTCTGATATG
Found at i:46933 original size:3 final size:3
Alignment explanation
Indices: 46925--47040 Score: 232
Period size: 3 Copynumber: 38.7 Consensus size: 3
46915 ACCCGAACAG
46925 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
46973 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
47021 TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TT
47041 AGTATTATTA
Statistics
Matches: 113, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 113 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:47717 original size:8 final size:8
Alignment explanation
Indices: 47706--47745 Score: 55
Period size: 8 Copynumber: 5.0 Consensus size: 8
47696 CTAAAATTAA
47706 AAAAAATG
1 AAAAAATG
47714 AAAAAATGG
1 AAAAAAT-G
47723 AAAAAAT-
1 AAAAAATG
*
47730 AAAAAAGG
1 AAAAAATG
47738 AAAAAATG
1 AAAAAATG
47746 TTGTATTTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
7 6 0.21
8 14 0.50
9 8 0.29
ACGTcount: A:0.75, C:0.00, G:0.15, T:0.10
Consensus pattern (8 bp):
AAAAAATG
Found at i:47733 original size:15 final size:15
Alignment explanation
Indices: 47706--47744 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
47696 CTAAAATTAA
47706 AAAAAATGAAAAAATGG
1 AAAAAAT-AAAAAA-GG
47723 AAAAAATAAAAAAGG
1 AAAAAATAAAAAAGG
47738 AAAAAAT
1 AAAAAAT
47745 GTTGTATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 9 0.41
16 6 0.27
17 7 0.32
ACGTcount: A:0.77, C:0.00, G:0.13, T:0.10
Consensus pattern (15 bp):
AAAAAATAAAAAAGG
Found at i:49254 original size:23 final size:23
Alignment explanation
Indices: 49228--49309 Score: 78
Period size: 23 Copynumber: 3.5 Consensus size: 23
49218 TAGTCGAAAC
* *
49228 TGCCACATAGGATTTCACCTAAG
1 TGCCACATAGAATTTCACCGAAG
* * *
49251 TGCCTCGTAGAATATGCACCGAAG
1 TGCCACATAGAAT-TTCACCGAAG
49275 TGCCACATAGAATTTTC-CCGAAG
1 TGCCACATAGAA-TTTCACCGAAG
49298 -GACCACATAGAA
1 TG-CCACATAGAA
49310 ATGTCCCGAA
Statistics
Matches: 48, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
22 1 0.02
23 26 0.54
24 20 0.42
25 1 0.02
ACGTcount: A:0.33, C:0.26, G:0.20, T:0.22
Consensus pattern (23 bp):
TGCCACATAGAATTTCACCGAAG
Found at i:49309 original size:47 final size:48
Alignment explanation
Indices: 49258--49379 Score: 135
Period size: 47 Copynumber: 2.6 Consensus size: 48
49248 AAGTGCCTCG
** *
49258 TAGAATATG-CACCGAAGTGCCACATAGAATTT-TCCCGAAGGACCACA
1 TAGAATATGTC-CCGAAGAACCACATAGAATTTGTCCCGAAAGACCACA
** *
49305 TAGAA-ATGTCCCGAAGAACTGCGTAGAATTTGTCCCGAAAGACCACA
1 TAGAATATGTCCCGAAGAACCACATAGAATTTGTCCCGAAAGACCACA
* *
49352 TAGAAT-TGTCCCGAAGGACCGCATAGAA
1 TAGAATATGTCCCGAAGAACCACATAGAA
49380 CCCTCGACTA
Statistics
Matches: 63, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
46 19 0.30
47 44 0.70
ACGTcount: A:0.36, C:0.24, G:0.21, T:0.19
Consensus pattern (48 bp):
TAGAATATGTCCCGAAGAACCACATAGAATTTGTCCCGAAAGACCACA
Found at i:49316 original size:23 final size:23
Alignment explanation
Indices: 49269--49379 Score: 125
Period size: 23 Copynumber: 4.8 Consensus size: 23
49259 AGAATATGCA
*
49269 CCGAAGTG-CCACATAGAATTTTC
1 CCGAAG-GACCACATAGAATTGTC
*
49292 CCGAAGGACCACATAGAAATGTC
1 CCGAAGGACCACATAGAATTGTC
* ** *
49315 CCGAAGAACTGCGTAGAATTTGTC
1 CCGAAGGACCACATAGAA-TTGTC
*
49339 CCGAAAGACCACATAGAATTGTC
1 CCGAAGGACCACATAGAATTGTC
*
49362 CCGAAGGACCGCATAGAA
1 CCGAAGGACCACATAGAA
49380 CCCTCGACTA
Statistics
Matches: 72, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
22 1 0.01
23 54 0.75
24 17 0.24
ACGTcount: A:0.35, C:0.25, G:0.22, T:0.18
Consensus pattern (23 bp):
CCGAAGGACCACATAGAATTGTC
Found at i:69601 original size:36 final size:36
Alignment explanation
Indices: 69560--69632 Score: 130
Period size: 36 Copynumber: 2.0 Consensus size: 36
69550 TTAGAATGGT
69560 TACATCCTTTCATATGAATAGTTATA-ACTATTCATA
1 TACATCCTTTCATATGAATAGTTATATA-TATTCATA
69596 TACATCCTTTCATATGAATAGTTATATATATTCATA
1 TACATCCTTTCATATGAATAGTTATATATATTCATA
69632 T
1 T
69633 GAATAATTAC
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
36 35 0.97
37 1 0.03
ACGTcount: A:0.36, C:0.15, G:0.05, T:0.44
Consensus pattern (36 bp):
TACATCCTTTCATATGAATAGTTATATATATTCATA
Found at i:69629 original size:22 final size:22
Alignment explanation
Indices: 69596--69706 Score: 93
Period size: 22 Copynumber: 5.1 Consensus size: 22
69586 ACTATTCATA
* *
69596 TACATCCTTTCATATGAATAGT
1 TACATCATTTCATATGAATAAT
*
69618 TATAT-ATATTCATATGAATAAT
1 TACATCAT-TTCATATGAATAAT
*
69640 TACATCATTTCATTTGAATAAT
1 TACATCATTTCATATGAATAAT
* ** * *
69662 TACTTCCA-AACACATGAATCAT
1 TACAT-CATTTCATATGAATAAT
*
69684 TACAACA-TTCATATGAATAAT
1 TACATCATTTCATATGAATAAT
69705 TA
1 TA
69707 TACCCTTTAA
Statistics
Matches: 69, Mismatches: 17, Indels: 7
0.74 0.18 0.08
Matches are distributed among these distances:
21 15 0.22
22 50 0.72
23 4 0.06
ACGTcount: A:0.41, C:0.15, G:0.05, T:0.39
Consensus pattern (22 bp):
TACATCATTTCATATGAATAAT
Found at i:70148 original size:29 final size:29
Alignment explanation
Indices: 70106--70165 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
70096 ATACAGTGGT
70106 CTTGGAGGTCGCCATGGCATCCGGGCGAC
1 CTTGGAGGTCGCCATGGCATCCGGGCGAC
70135 CTTGGAGGTCGCCATGGCATCCGGGCGAC
1 CTTGGAGGTCGCCATGGCATCCGGGCGAC
70164 CT
1 CT
70166 GTGTGTATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.13, C:0.32, G:0.37, T:0.18
Consensus pattern (29 bp):
CTTGGAGGTCGCCATGGCATCCGGGCGAC
Found at i:70226 original size:17 final size:16
Alignment explanation
Indices: 70204--70274 Score: 67
Period size: 17 Copynumber: 4.4 Consensus size: 16
70194 ATGCAATCAA
70204 CATGGGACGTGGGAATG
1 CATGGG-CGTGGGAATG
* *
70221 CATGGGGGATGGGGATG
1 CATGGGCG-TGGGAATG
70238 CATGGGACGTGGGGAATG
1 CATGGG-CGT-GGGAATG
70256 CA-GGG-GT-GGAATG
1 CATGGGCGTGGGAATG
70269 CATGGG
1 CATGGG
70275 GGAGGGGATG
Statistics
Matches: 46, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
13 8 0.17
14 3 0.07
15 2 0.04
16 1 0.02
17 23 0.50
18 9 0.20
ACGTcount: A:0.21, C:0.10, G:0.52, T:0.17
Consensus pattern (16 bp):
CATGGGCGTGGGAATG
Found at i:70858 original size:21 final size:21
Alignment explanation
Indices: 70833--70876 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
70823 AATCTAGTTA
70833 ATTAGTTTGTTAGTATAAATT
1 ATTAGTTTGTTAGTATAAATT
* *
70854 ATTAGTTTGTTAGTTTAAGTT
1 ATTAGTTTGTTAGTATAAATT
70875 AT
1 AT
70877 ATTTATTAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.30, C:0.00, G:0.16, T:0.55
Consensus pattern (21 bp):
ATTAGTTTGTTAGTATAAATT
Found at i:70893 original size:27 final size:28
Alignment explanation
Indices: 70852--70913 Score: 99
Period size: 27 Copynumber: 2.2 Consensus size: 28
70842 TTAGTATAAA
*
70852 TTATTAGTTTGTTAGTTTAAGTTA-TAT
1 TTATTAGTTTATTAGTTTAAGTTATTAT
70879 TTATTAGTTTATTAGTTTAAGTTATTAT
1 TTATTAGTTTATTAGTTTAAGTTATTAT
70907 TATATTA
1 T-TATTA
70914 TATAAAAAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
27 23 0.72
28 4 0.12
29 5 0.16
ACGTcount: A:0.29, C:0.00, G:0.11, T:0.60
Consensus pattern (28 bp):
TTATTAGTTTATTAGTTTAAGTTATTAT
Found at i:71412 original size:15 final size:15
Alignment explanation
Indices: 71392--71443 Score: 50
Period size: 15 Copynumber: 3.1 Consensus size: 15
71382 TTCGGTTTTA
71392 AAAAATATTGTGTTT
1 AAAAATATTGTGTTT
71407 AAAAATATTTAGTGTTATTT
1 AAAAATA-TT-GTG---TTT
*
71427 AAAAATATTTTGTTT
1 AAAAATATTGTGTTT
71442 AA
1 AA
71444 TTTACATTGT
Statistics
Matches: 31, Mismatches: 1, Indels: 10
0.74 0.02 0.24
Matches are distributed among these distances:
15 12 0.39
16 2 0.06
17 3 0.10
18 2 0.06
19 2 0.06
20 10 0.32
ACGTcount: A:0.42, C:0.00, G:0.10, T:0.48
Consensus pattern (15 bp):
AAAAATATTGTGTTT
Found at i:71727 original size:28 final size:26
Alignment explanation
Indices: 71693--71757 Score: 69
Period size: 26 Copynumber: 2.4 Consensus size: 26
71683 GATTATGACT
*
71693 AAATCATATTATTAAATCATTAAATATC
1 AAATCATATTATT-AAT-AGTAAATATC
* *
71721 AAATCAT-TAGATTAATAGTAATTATC
1 AAATCATAT-TATTAATAGTAAATATC
71747 AAATCATATTA
1 AAATCATATTA
71758 GGTTTTTAGT
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
26 16 0.52
27 5 0.16
28 10 0.32
ACGTcount: A:0.49, C:0.09, G:0.03, T:0.38
Consensus pattern (26 bp):
AAATCATATTATTAATAGTAAATATC
Found at i:73236 original size:14 final size:14
Alignment explanation
Indices: 73217--73245 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
73207 TTGGCAAGAA
73217 TAGTATCGACCAGT
1 TAGTATCGACCAGT
73231 TAGTATCGACCAGT
1 TAGTATCGACCAGT
73245 T
1 T
73246 TCATAACGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.31
Consensus pattern (14 bp):
TAGTATCGACCAGT
Found at i:74293 original size:15 final size:14
Alignment explanation
Indices: 74279--74325 Score: 53
Period size: 14 Copynumber: 3.5 Consensus size: 14
74269 ATTTGATGAT
74279 TAGTAATGATTTGA
1 TAGTAATGATTTGA
* *
74293 TAATAATCA-TT-A
1 TAGTAATGATTTGA
74305 TAGTAATGATTTGA
1 TAGTAATGATTTGA
*
74319 TAATAAT
1 TAGTAAT
74326 CATTATAATG
Statistics
Matches: 26, Mismatches: 5, Indels: 4
0.74 0.14 0.11
Matches are distributed among these distances:
12 8 0.31
13 4 0.15
14 14 0.54
ACGTcount: A:0.43, C:0.02, G:0.13, T:0.43
Consensus pattern (14 bp):
TAGTAATGATTTGA
Found at i:74308 original size:26 final size:26
Alignment explanation
Indices: 74279--74614 Score: 258
Period size: 26 Copynumber: 13.7 Consensus size: 26
74269 ATTTGATGAT
74279 TAGTAATGATTTGATAATAATCATTA
1 TAGTAATGATTTGATAATAATCATTA
74305 TAGTAATGATTTGATAATAATCA-T-
1 TAGTAATGATTTGATAATAATCATTA
74329 TA-TAATGATTT-AGTAATAATCATTA
1 TAGTAATGATTTGA-TAATAATCATTA
* *
74354 TA-AAATGA-TT--TAATAATGATT-
1 TAGTAATGATTTGATAATAATCATTA
* * * *
74375 TA--AAT-ATTTAATGATTTGATGATT-
1 TAGTAATGATTTGAT-A-ATAATCATTA
74399 TAGTAATGATTTGATAATAATCATTA
1 TAGTAATGATTTGATAATAATCATTA
74425 TAGTAATGATTTGATAATAATCATTA
1 TAGTAATGATTTGATAATAATCATTA
*
74451 TAATAATGATTT-AGTAATAATCATTA
1 TAGTAATGATTTGA-TAATAATCATTA
** *
74477 TAAAAATGA-TT--TAATAATGATT-
1 TAGTAATGATTTGATAATAATCATTA
* * * * *
74499 TA--AAT-TTTTAATGATTTGATGATT-
1 TAGTAATGATTTGAT-A-ATAATCATTA
74523 TAGTAATGA-TTGATAATAATCATTA
1 TAGTAATGATTTGATAATAATCATTA
74548 TAGTAATGATTTGATAATAATCA-T-
1 TAGTAATGATTTGATAATAATCATTA
74572 TA-TAATGATTT-AGTAATAATCATTA
1 TAGTAATGATTTGA-TAATAATCATTA
** *
74597 TAAAAATGATTTAATAAT
1 TAGTAATGATTTGATAAT
74615 GATTTAAATA
Statistics
Matches: 262, Mismatches: 20, Indels: 56
0.78 0.06 0.17
Matches are distributed among these distances:
19 1 0.00
20 10 0.04
21 2 0.01
22 16 0.06
23 48 0.18
24 32 0.12
25 30 0.11
26 116 0.44
27 7 0.03
ACGTcount: A:0.43, C:0.03, G:0.10, T:0.43
Consensus pattern (26 bp):
TAGTAATGATTTGATAATAATCATTA
Found at i:74383 original size:19 final size:22
Alignment explanation
Indices: 74293--74386 Score: 72
Period size: 23 Copynumber: 4.2 Consensus size: 22
74283 AATGATTTGA
*
74293 TAATAATCATTATAGTAATGATTT
1 TAATAATCATTATA-AAATGA-TT
74317 GATAATAATCATTAT--AATGATTT
1 --TAATAATCATTATAAAATGA-TT
74340 AGTAATAATCATTATAAAATGATT
1 --TAATAATCATTATAAAATGATT
*
74364 TAATAATGATT-T-AAAT-ATT
1 TAATAATCATTATAAAATGATT
74383 TAAT
1 TAAT
74387 GATTTGATGA
Statistics
Matches: 63, Mismatches: 3, Indels: 11
0.82 0.04 0.14
Matches are distributed among these distances:
19 7 0.11
20 4 0.06
21 1 0.02
22 10 0.16
23 21 0.33
24 2 0.03
25 5 0.08
26 13 0.21
ACGTcount: A:0.46, C:0.03, G:0.07, T:0.44
Consensus pattern (22 bp):
TAATAATCATTATAAAATGATT
Found at i:74428 original size:120 final size:121
Alignment explanation
Indices: 74226--74671 Score: 803
Period size: 120 Copynumber: 3.7 Consensus size: 121
74216 ATGTATTTAT
74226 TAATCATTATAAAAATGATTTAATAATGATTTAAATA-TTAATGATTTGATGA-TTAGTAATGAT
1 TAATCATTATAAAAATGATTTAATAATGATTTAAATATTTAATGATTTGATGATTTAGTAATGAT
74289 TTGATAATAATCATTATAGTAATGATTTGATAATAATCATTATAATGATTTAGTAA
66 TTGATAATAATCATTATAGTAATGATTTGATAATAATCATTATAATGATTTAGTAA
74345 TAATCATTAT-AAAATGATTTAATAATGATTTAAATATTTAATGATTTGATGATTTAGTAATGAT
1 TAATCATTATAAAAATGATTTAATAATGATTTAAATATTTAATGATTTGATGATTTAGTAATGAT
74409 TTGATAATAATCATTATAGTAATGATTTGATAATAATCATTATAATAATGATTTAGTAA
66 TTGATAATAATCATTATAGTAATGATTTGATAATAATCA-T-T-ATAATGATTTAGTAA
*
74468 TAATCATTATAAAAATGATTTAATAATGATTTAAATTTTTAATGATTTGATGATTTAGTAATGA-
1 TAATCATTATAAAAATGATTTAATAATGATTTAAATATTTAATGATTTGATGATTTAGTAATGAT
74532 TTGATAATAATCATTATAGTAATGATTTGATAATAATCATTATAATGATTTAGTAA
66 TTGATAATAATCATTATAGTAATGATTTGATAATAATCATTATAATGATTTAGTAA
74588 TAATCATTATAAAAATGATTTAATAATGATTTAAATATTTAATGATTTGATGATTTAGTAATGAT
1 TAATCATTATAAAAATGATTTAATAATGATTTAAATATTTAATGATTTGATGATTTAGTAATGAT
* *
74653 TTTATAATAATTATT-TAGT
66 TTGATAATAATCATTATAGT
74672 TATTATTTAG
Statistics
Matches: 316, Mismatches: 4, Indels: 13
0.95 0.01 0.04
Matches are distributed among these distances:
118 26 0.08
119 25 0.08
120 132 0.42
121 15 0.05
122 2 0.01
123 64 0.20
124 52 0.16
ACGTcount: A:0.43, C:0.02, G:0.11, T:0.44
Consensus pattern (121 bp):
TAATCATTATAAAAATGATTTAATAATGATTTAAATATTTAATGATTTGATGATTTAGTAATGAT
TTGATAATAATCATTATAGTAATGATTTGATAATAATCATTATAATGATTTAGTAA
Found at i:74485 original size:97 final size:100
Alignment explanation
Indices: 74295--74577 Score: 283
Period size: 97 Copynumber: 2.9 Consensus size: 100
74285 TGATTTGATA
*
74295 ATAATCATTATAGTAATGATTTGATAATAATCA-TTA-TAATGATTT-AGTAATAATCATTATAA
1 ATAATGATT-TAGTAATGATTTGATAATAATCATTTAGTAATGATTTGA-TAATAATCATTATAA
* *
74357 -AATGATTTAATAATGAT--TTA-AATATTTAATGA-TT
64 TAATGATTTAGTAATAATCATTATAATA--TAATGATTT
*
74391 -TGATGATTTAGTAATGATTTGATAATAATCATTATAGTAATGATTTGATAATAATCATTATAAT
1 ATAATGATTTAGTAATGATTTGATAATAATCATT-TAGTAATGATTTGATAATAATCATTATAAT
74455 AATGATTTAGTAATAATCATTATAA-A-AATGATTT
65 AATGATTTAGTAATAATCATTATAATATAATGATTT
* * * * *
74489 AATAATGATTTA--AAT-TTTTAATGATTTGATGATTTAGTAATGA-TTGATAATAATCATTATA
1 -ATAATGATTTAGTAATGATTTGAT-A-ATAATCATTTAGTAATGATTTGATAATAATCATTATA
*
74550 GTAATGATTT-GATAATAATCATTATAAT
63 ATAATGATTTAG-TAATAATCATTATAAT
74578 GATTTAGTAA
Statistics
Matches: 161, Mismatches: 11, Indels: 28
0.81 0.05 0.14
Matches are distributed among these distances:
94 23 0.14
95 7 0.04
96 3 0.02
97 76 0.47
98 31 0.19
99 6 0.04
100 13 0.08
101 2 0.01
ACGTcount: A:0.43, C:0.03, G:0.10, T:0.44
Consensus pattern (100 bp):
ATAATGATTTAGTAATGATTTGATAATAATCATTTAGTAATGATTTGATAATAATCATTATAATA
ATGATTTAGTAATAATCATTATAATATAATGATTT
Found at i:74529 original size:19 final size:18
Alignment explanation
Indices: 74482--74533 Score: 54
Period size: 16 Copynumber: 2.9 Consensus size: 18
74472 CATTATAAAA
74482 ATGATTTAATAATGATTT
1 ATGATTTAATAATGATTT
* *
74500 A-AATTT-TTAATGATTT
1 ATGATTTAATAATGATTT
*
74516 GATGATTTAGTAATGATT
1 -ATGATTTAATAATGATT
74534 GATAATAATC
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
16 9 0.33
17 5 0.19
18 5 0.19
19 8 0.30
ACGTcount: A:0.37, C:0.00, G:0.13, T:0.50
Consensus pattern (18 bp):
ATGATTTAATAATGATTT
Found at i:74660 original size:11 final size:11
Alignment explanation
Indices: 74274--74588 Score: 50
Period size: 11 Copynumber: 28.2 Consensus size: 11
74264 TAATGATTTG
74274 ATGA-TTAGTA
1 ATGATTTAGTA
*
74284 ATGATTTGATAATA
1 ATGA-TT--TAGTA
*
74298 ATCATTATAGTA
1 ATGATT-TAGTA
74310 ATGATTT-GATA
1 ATGATTTAG-TA
*
74321 ATAATCATTA-TA
1 ATGAT--TTAGTA
74333 ATGATTTAGTA
1 ATGATTTAGTA
*
74344 ATAATCATTA-TAAA
1 ATGAT--TTAGT--A
*
74358 ATGATTTAATA
1 ATGATTTAGTA
74369 ATGATTTA--A
1 ATGATTTAGTA
74378 AT-A-TT--TA
1 ATGATTTAGTA
74385 ATGATTT-G--
1 ATGATTTAGTA
74393 ATGATTTAGTA
1 ATGATTTAGTA
*
74404 ATGATTTGATAATA
1 ATGA-TT--TAGTA
*
74418 ATCATTATAGTA
1 ATGATT-TAGTA
*
74430 ATGATTTGATAATA
1 ATGA-TT--TAGTA
* *
74444 ATCATTATAATA
1 ATGATT-TAGTA
74456 ATGATTTAGTA
1 ATGATTTAGTA
*
74467 ATAATCATTA-TAAAA
1 ATGAT--TTAGT---A
*
74482 ATGATTTAATA
1 ATGATTTAGTA
74493 ATGATTTA--A
1 ATGATTTAGTA
74502 AT--TTT--TA
1 ATGATTTAGTA
74509 ATGATTT-G--
1 ATGATTTAGTA
74517 ATGATTTAGTA
1 ATGATTTAGTA
*
74528 ATGATTGATAATA
1 ATGATT--TAGTA
*
74541 ATCATTATAGTA
1 ATGATT-TAGTA
74553 ATGATTT-GATA
1 ATGATTTAG-TA
*
74564 ATAATCATTA-TA
1 ATGAT--TTAGTA
74576 ATGATTTAGTA
1 ATGATTTAGTA
74587 AT
1 AT
74589 AATCATTATA
Statistics
Matches: 235, Mismatches: 24, Indels: 91
0.67 0.07 0.26
Matches are distributed among these distances:
7 11 0.05
8 16 0.07
9 13 0.06
10 12 0.05
11 60 0.26
12 59 0.25
13 31 0.13
14 28 0.12
15 5 0.02
ACGTcount: A:0.43, C:0.03, G:0.11, T:0.44
Consensus pattern (11 bp):
ATGATTTAGTA
Found at i:74895 original size:17 final size:17
Alignment explanation
Indices: 74870--74902 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
74860 ACTAAATATT
*
74870 TAATTATTTGATACTAG
1 TAATGATTTGATACTAG
74887 TAATGATTTGATACTA
1 TAATGATTTGATACTA
74903 AAAATCATTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.06, G:0.12, T:0.45
Consensus pattern (17 bp):
TAATGATTTGATACTAG
Found at i:74895 original size:25 final size:23
Alignment explanation
Indices: 74816--74895 Score: 67
Period size: 24 Copynumber: 3.3 Consensus size: 23
74806 GGATTTTTGT
74816 TAATATTTAATTATTTGATAC--
1 TAATATTTAATTATTTGATACTA
* *
74837 TAATGATTTAAAATAGTTGATTTACTA
1 TAAT-ATTT-AATTATTTGA--TACTA
74864 -AATATTTAATTATTTGATACTA
1 TAATATTTAATTATTTGATACTA
74886 GTAATGATTT
1 -TAAT-ATTT
74896 GATACTAAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 14
0.72 0.06 0.22
Matches are distributed among these distances:
21 4 0.09
22 9 0.20
23 8 0.17
24 11 0.24
25 11 0.24
26 3 0.07
ACGTcount: A:0.39, C:0.04, G:0.09, T:0.49
Consensus pattern (23 bp):
TAATATTTAATTATTTGATACTA
Found at i:77068 original size:15 final size:14
Alignment explanation
Indices: 77045--77075 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
77035 TACAACACTA
77045 AACTTTAATATAAT
1 AACTTTAATATAAT
77059 AACTTATAATATAAT
1 AACTT-TAATATAAT
77074 AA
1 AA
77076 ACTAATAAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.31
15 11 0.69
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (14 bp):
AACTTTAATATAAT
Found at i:77083 original size:16 final size:16
Alignment explanation
Indices: 77050--77096 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
77040 CACTAAACTT
*
77050 TAATATAAT-AACTTA
1 TAATATAATAAACTAA
77065 TAATATAATAAACTAA
1 TAATATAATAAACTAA
*
77081 TAA-ACTAACAAACTAA
1 TAATA-TAATAAACTAA
77097 ACTTTTTAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
15 10 0.36
16 18 0.64
ACGTcount: A:0.60, C:0.11, G:0.00, T:0.30
Consensus pattern (16 bp):
TAATATAATAAACTAA
Found at i:77329 original size:45 final size:47
Alignment explanation
Indices: 77252--77339 Score: 128
Period size: 45 Copynumber: 1.9 Consensus size: 47
77242 CAACAAACAA
*
77252 ATAACTTAACTATTTAACTAACACAAACTAATTAAATAATTTTTTTAT
1 ATAACTTAACTATTTAACTAAAACAAACTAATT-AATAATTTTTTTAT
*
77300 ATAAC-TAACTA-TTAAC-AAAACAAACTAATTAATTATTTTT
1 ATAACTTAACTATTTAACTAAAACAAACTAATTAATAATTTTT
77340 AACTATAACT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
44 9 0.24
45 13 0.34
46 5 0.13
47 6 0.16
48 5 0.13
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.40
Consensus pattern (47 bp):
ATAACTTAACTATTTAACTAAAACAAACTAATTAATAATTTTTTTAT
Found at i:77349 original size:44 final size:47
Alignment explanation
Indices: 77252--77350 Score: 125
Period size: 45 Copynumber: 2.1 Consensus size: 47
77242 CAACAAACAA
* *
77252 ATAACTTAACTATTTAACTAACACAAACTAATTAAATAATTTTTTTAT
1 ATAAC-TAACTATTTAACTAAAACAAACTAATTAAATAATTTTTTAAT
*
77300 ATAACTAACTA-TTAAC-AAAACAAACTAATT-AATTA-TTTTTAACT
1 ATAACTAACTATTTAACTAAAACAAACTAATTAAATAATTTTTTAA-T
77344 ATAACTA
1 ATAACTA
77351 TCAAACATAT
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
43 6 0.13
44 12 0.26
45 13 0.28
46 5 0.11
47 6 0.13
48 5 0.11
ACGTcount: A:0.48, C:0.13, G:0.00, T:0.38
Consensus pattern (47 bp):
ATAACTAACTATTTAACTAAAACAAACTAATTAAATAATTTTTTAAT
Found at i:77568 original size:21 final size:21
Alignment explanation
Indices: 77538--77589 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
77528 CCCTTTCTTC
*
77538 TTCTTACTTTCCTTTCTCCCT
1 TTCTTTCTTTCCTTTCTCCCT
*
77559 TTCTTTCTTTCCTTTCTCCTT
1 TTCTTTCTTTCCTTTCTCCCT
77580 TTC-TTCTTTC
1 TTCTTTCTTTC
77590 TCGGCTGCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
20 7 0.24
21 22 0.76
ACGTcount: A:0.02, C:0.35, G:0.00, T:0.63
Consensus pattern (21 bp):
TTCTTTCTTTCCTTTCTCCCT
Found at i:77615 original size:25 final size:23
Alignment explanation
Indices: 77593--77636 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
77583 TTCTTTCTCG
77593 GCTGCAATCTCTTCTCCCTTTCT
1 GCTGCAATCTCTTCTCCCTTTCT
*
77616 TCTGCAATCTCTTCTCCCTTT
1 GCTGCAATCTCTTCTCCCTTT
77637 TCTTTCTTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.09, C:0.39, G:0.07, T:0.45
Consensus pattern (23 bp):
GCTGCAATCTCTTCTCCCTTTCT
Found at i:77681 original size:25 final size:25
Alignment explanation
Indices: 77653--77704 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
77643 TTTCTTTTAT
77653 AACCGGCTGCCTCAATTATTTCACC
1 AACCGGCTGCCTCAATTATTTCACC
77678 AACCGGCTGCCTCAATTATTTCACC
1 AACCGGCTGCCTCAATTATTTCACC
77703 AA
1 AA
77705 TAATTGTACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.27, C:0.35, G:0.12, T:0.27
Consensus pattern (25 bp):
AACCGGCTGCCTCAATTATTTCACC
Found at i:77893 original size:13 final size:13
Alignment explanation
Indices: 77875--77906 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
77865 GGCTGCATGT
77875 GAATGGATGATGG
1 GAATGGATGATGG
77888 GAATGGATGATGG
1 GAATGGATGATGG
77901 GAATGG
1 GAATGG
77907 CGCCGGGACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.31, C:0.00, G:0.47, T:0.22
Consensus pattern (13 bp):
GAATGGATGATGG
Found at i:78015 original size:29 final size:29
Alignment explanation
Indices: 77907--77997 Score: 173
Period size: 29 Copynumber: 3.1 Consensus size: 29
77897 ATGGGAATGG
*
77907 CGCCGGGACTACATGGCGACCTACAAGGT
1 CGCCGGGACCACATGGCGACCTACAAGGT
77936 CGCCGGGACCACATGGCGACCTACAAGGT
1 CGCCGGGACCACATGGCGACCTACAAGGT
77965 CGCCGGGACCACATGGCGACCTACAAGGT
1 CGCCGGGACCACATGGCGACCTACAAGGT
77994 CGCC
1 CGCC
77998 TAGGCTGCAT
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 61 1.00
ACGTcount: A:0.23, C:0.35, G:0.31, T:0.11
Consensus pattern (29 bp):
CGCCGGGACCACATGGCGACCTACAAGGT
Found at i:78063 original size:17 final size:17
Alignment explanation
Indices: 78063--78122 Score: 50
Period size: 17 Copynumber: 3.6 Consensus size: 17
78053 CGCTCGTATG
78063 GCTCGCATGGGGAGAAC
1 GCTCGCATGGGGAGAAC
* *****
78080 GCTCGTATGGCTCCTAC
1 GCTCGCATGGGGAGAAC
78097 -CTCGCATGGGGAGAAC
1 GCTCGCATGGGGAGAAC
*
78113 GCTCGTATGG
1 GCTCGCATGG
78123 CTCACATGGG
Statistics
Matches: 29, Mismatches: 13, Indels: 2
0.66 0.30 0.05
Matches are distributed among these distances:
16 10 0.34
17 19 0.66
ACGTcount: A:0.18, C:0.27, G:0.35, T:0.20
Consensus pattern (17 bp):
GCTCGCATGGGGAGAAC
Found at i:78106 original size:33 final size:30
Alignment explanation
Indices: 78041--78203 Score: 189
Period size: 26 Copynumber: 5.4 Consensus size: 30
78031 TGCACACCTC
78041 GCATGGGGAGAACGCTCGTATGGCT-C---
1 GCATGGGGAGAACGCTCGTATGGCTCCTAT
78067 GCATGGGGAGAACGCTCGTATGGCTCCTACCT
1 GCATGGGGAGAACGCTCGTATGGCTCCTA--T
78099 CGCATGGGGAGAACGCTCGTATGGCT-C-A-
1 -GCATGGGGAGAACGCTCGTATGGCTCCTAT
78127 -CATGGGGAGAACGCTCGTATGGCTCCTAT
1 GCATGGGGAGAACGCTCGTATGGCTCCTAT
*
78156 GCATGGGGAGAACCATTGGCTCGTATGGCTCGTAT
1 GCATGGGGAGAA-C----GCTCGTATGGCTCCTAT
78191 GCATGGGGAGAAC
1 GCATGGGGAGAAC
78204 CATTGGCTCG
Statistics
Matches: 120, Mismatches: 1, Indels: 24
0.83 0.01 0.17
Matches are distributed among these distances:
26 49 0.41
27 2 0.02
28 1 0.01
30 11 0.09
31 2 0.02
32 1 0.01
33 25 0.21
34 1 0.01
35 28 0.23
ACGTcount: A:0.21, C:0.23, G:0.35, T:0.21
Consensus pattern (30 bp):
GCATGGGGAGAACGCTCGTATGGCTCCTAT
Found at i:78107 original size:59 final size:59
Alignment explanation
Indices: 78036--78168 Score: 236
Period size: 59 Copynumber: 2.3 Consensus size: 59
78026 CTGCATGCAC
*
78036 ACCTCGCATGGGGAGAACGCTCGTATGGCTCGCATGGGGAGAACGCTCGTATGGCTCCT
1 ACCTCGCATGGGGAGAACGCTCGTATGGCTCACATGGGGAGAACGCTCGTATGGCTCCT
78095 ACCTCGCATGGGGAGAACGCTCGTATGGCTCACATGGGGAGAACGCTCGTATGGCTCCT
1 ACCTCGCATGGGGAGAACGCTCGTATGGCTCACATGGGGAGAACGCTCGTATGGCTCCT
78154 A--T-GCATGGGGAGAAC
1 ACCTCGCATGGGGAGAAC
78169 CATTGGCTCG
Statistics
Matches: 73, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
56 13 0.18
57 1 0.01
59 59 0.81
ACGTcount: A:0.21, C:0.26, G:0.34, T:0.20
Consensus pattern (59 bp):
ACCTCGCATGGGGAGAACGCTCGTATGGCTCACATGGGGAGAACGCTCGTATGGCTCCT
Found at i:78185 original size:35 final size:35
Alignment explanation
Indices: 78139--78226 Score: 167
Period size: 35 Copynumber: 2.5 Consensus size: 35
78129 TGGGGAGAAC
*
78139 GCTCGTATGGCTCCTATGCATGGGGAGAACCATTG
1 GCTCGTATGGCTCGTATGCATGGGGAGAACCATTG
78174 GCTCGTATGGCTCGTATGCATGGGGAGAACCATTG
1 GCTCGTATGGCTCGTATGCATGGGGAGAACCATTG
78209 GCTCGTATGGCTCGTATG
1 GCTCGTATGGCTCGTATG
78227 TCACCCCGTA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
35 52 1.00
ACGTcount: A:0.18, C:0.22, G:0.33, T:0.27
Consensus pattern (35 bp):
GCTCGTATGGCTCGTATGCATGGGGAGAACCATTG
Found at i:78238 original size:12 final size:12
Alignment explanation
Indices: 78221--78262 Score: 75
Period size: 12 Copynumber: 3.5 Consensus size: 12
78211 TCGTATGGCT
78221 CGTATGTCACCC
1 CGTATGTCACCC
*
78233 CGTATGTCAACC
1 CGTATGTCACCC
78245 CGTATGTCACCC
1 CGTATGTCACCC
78257 CGTATG
1 CGTATG
78263 GCCACCTCGC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 28 1.00
ACGTcount: A:0.19, C:0.36, G:0.19, T:0.26
Consensus pattern (12 bp):
CGTATGTCACCC
Found at i:78305 original size:30 final size:32
Alignment explanation
Indices: 78271--78336 Score: 91
Period size: 35 Copynumber: 2.0 Consensus size: 32
78261 TGGCCACCTC
78271 GCATGGGGAGAA-C-GCTCGTATGGCTCGTAT
1 GCATGGGGAGAACCTGCTCGTATGGCTCGTAT
78301 GCATGGGGAGAACCATTGGCTCGTATGGCTCGTAT
1 GCATGGGGAGAACC--T-GCTCGTATGGCTCGTAT
78336 G
1 G
78337 TCAACCCGTA
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
30 12 0.39
31 1 0.03
35 18 0.58
ACGTcount: A:0.20, C:0.20, G:0.36, T:0.24
Consensus pattern (32 bp):
GCATGGGGAGAACCTGCTCGTATGGCTCGTAT
Found at i:78391 original size:29 final size:29
Alignment explanation
Indices: 78349--78430 Score: 164
Period size: 29 Copynumber: 2.8 Consensus size: 29
78339 AACCCGTATG
78349 TCGCCTGGATTGCATGGCGTCCTACAAGA
1 TCGCCTGGATTGCATGGCGTCCTACAAGA
78378 TCGCCTGGATTGCATGGCGTCCTACAAGA
1 TCGCCTGGATTGCATGGCGTCCTACAAGA
78407 TCGCCTGGATTGCATGGCGTCCTA
1 TCGCCTGGATTGCATGGCGTCCTA
78431 TGATCACTGT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 53 1.00
ACGTcount: A:0.18, C:0.28, G:0.28, T:0.26
Consensus pattern (29 bp):
TCGCCTGGATTGCATGGCGTCCTACAAGA
Found at i:83930 original size:21 final size:21
Alignment explanation
Indices: 83904--83958 Score: 92
Period size: 21 Copynumber: 2.6 Consensus size: 21
83894 GATTTACATA
83904 TTCGCATTGCGATAGTCCAAG
1 TTCGCATTGCGATAGTCCAAG
*
83925 TTCGCATTGCGATAGTCGAAG
1 TTCGCATTGCGATAGTCCAAG
*
83946 TTCGCGTTGCGAT
1 TTCGCATTGCGAT
83959 TTTCCAAATT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.20, C:0.22, G:0.27, T:0.31
Consensus pattern (21 bp):
TTCGCATTGCGATAGTCCAAG
Found at i:83958 original size:42 final size:42
Alignment explanation
Indices: 83904--84144 Score: 174
Period size: 42 Copynumber: 5.6 Consensus size: 42
83894 GATTTACATA
* * *
83904 TTCGCATTGCGATAGTCCAAGTTCGCATTGCGATAGTCGAAG
1 TTCGCGTTGCGATATTCCAAATTCGCATTGCGATAGTCGAAG
* * *
83946 TTCGCGTTGCGATTTTCCAAATTCGACTATCGC-A-ACG-CGAAC
1 TTCGCGTTGCGATATTCCAAATTCG-C-ATTGCGATA-GTCGAAG
* * * * **
83988 TTCGACTATCGTATTGCAAT-TTACATATTCGCATCGCGATAGTCCTAG
1 TTCG-----CG--TTGCGATATTCCAAATTCGCATTGCGATAGTCGAAG
* *
84036 TTCGCGTTGCGATTTTTCAAATTCG--TTGCGATAGTCGAAG
1 TTCGCGTTGCGATATTCCAAATTCGCATTGCGATAGTCGAAG
84076 TTCGCGTTGCGATTTATTCCAAATTCG--TTGCGATAGTCGAAG
1 TTCGCGTTGCGA--TATTCCAAATTCGCATTGCGATAGTCGAAG
84118 TTCGCGTTGCGATTTATTCCAAATTCG
1 TTCGCGTTGCGA--TATTCCAAATTCG
84145 TTGTGATAGT
Statistics
Matches: 163, Mismatches: 20, Indels: 32
0.76 0.09 0.15
Matches are distributed among these distances:
40 24 0.15
41 6 0.04
42 92 0.56
43 5 0.03
44 4 0.02
46 5 0.03
47 5 0.03
48 16 0.10
49 6 0.04
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.34
Consensus pattern (42 bp):
TTCGCGTTGCGATATTCCAAATTCGCATTGCGATAGTCGAAG
Found at i:83970 original size:21 final size:21
Alignment explanation
Indices: 83885--83970 Score: 84
Period size: 21 Copynumber: 4.1 Consensus size: 21
83875 ACTTCGACTA
* * *
83885 TCGCATTGCGAT-TTACATAT
1 TCGCATTGCGATAGTCCAAAT
*
83905 TCGCATTGCGATAGTCCAAGT
1 TCGCATTGCGATAGTCCAAAT
* *
83926 TCGCATTGCGATAGTCGAAGT
1 TCGCATTGCGATAGTCCAAAT
* **
83947 TCGCGTTGCGATTTTCCAAAT
1 TCGCATTGCGATAGTCCAAAT
83968 TCG
1 TCG
83971 ACTATCGCAA
Statistics
Matches: 55, Mismatches: 10, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
20 12 0.22
21 43 0.78
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.34
Consensus pattern (21 bp):
TCGCATTGCGATAGTCCAAAT
Found at i:84047 original size:21 final size:21
Alignment explanation
Indices: 84023--84130 Score: 89
Period size: 21 Copynumber: 5.2 Consensus size: 21
84013 TATTCGCATC
*
84023 GCGATAGTCCTAGTTCGCGTT
1 GCGATAGTCCAAGTTCGCGTT
** * *
84044 GCGATTTTTCAAATT--CGTT
1 GCGATAGTCCAAGTTCGCGTT
*
84063 GCGATAGTCGAAGTTCGCGTT
1 GCGATAGTCCAAGTTCGCGTT
* *
84084 GCGATTTATTCCAAATT--CGTT
1 GCGA--TAGTCCAAGTTCGCGTT
*
84105 GCGATAGTCGAAGTTCGCGTT
1 GCGATAGTCCAAGTTCGCGTT
84126 GCGAT
1 GCGAT
84131 TTATTCCAAA
Statistics
Matches: 65, Mismatches: 16, Indels: 12
0.70 0.17 0.13
Matches are distributed among these distances:
19 22 0.34
21 35 0.54
23 8 0.12
ACGTcount: A:0.19, C:0.19, G:0.26, T:0.35
Consensus pattern (21 bp):
GCGATAGTCCAAGTTCGCGTT
Found at i:84145 original size:42 final size:42
Alignment explanation
Indices: 84023--84155 Score: 225
Period size: 42 Copynumber: 3.2 Consensus size: 42
84013 TATTCGCATC
**
84023 GCGATAGTCCTAGTTCGCGTTGCGATTT-TT-CAAATTCGTT
1 GCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATTCGTT
84063 GCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATTCGTT
1 GCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATTCGTT
84105 GCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATTCGTT
1 GCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATTCGTT
*
84147 GTGATAGTC
1 GCGATAGTC
84156 CAAAATCGCA
Statistics
Matches: 88, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
40 26 0.30
41 2 0.02
42 60 0.68
ACGTcount: A:0.20, C:0.19, G:0.24, T:0.37
Consensus pattern (42 bp):
GCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATTCGTT
Found at i:84146 original size:21 final size:21
Alignment explanation
Indices: 84040--84147 Score: 84
Period size: 21 Copynumber: 5.2 Consensus size: 21
84030 TCCTAGTTCG
84040 CGTTGCGATTT-TT-CAAATT
1 CGTTGCGATTTATTCCAAATT
* * *
84059 CGTTGCGA--TAGTCGAAGTT
1 CGTTGCGATTTATTCCAAATT
84078 CGCGTTGCGATTTATTCCAAATT
1 --CGTTGCGATTTATTCCAAATT
* * *
84101 CGTTGCGA--TAGTCGAAGTT
1 CGTTGCGATTTATTCCAAATT
84120 CGCGTTGCGATTTATTCCAAATT
1 --CGTTGCGATTTATTCCAAATT
84143 CGTTG
1 CGTTG
84148 TGATAGTCCA
Statistics
Matches: 67, Mismatches: 12, Indels: 18
0.69 0.12 0.19
Matches are distributed among these distances:
17 1 0.01
18 1 0.01
19 20 0.30
21 29 0.43
23 16 0.24
ACGTcount: A:0.20, C:0.19, G:0.23, T:0.38
Consensus pattern (21 bp):
CGTTGCGATTTATTCCAAATT
Found at i:84159 original size:19 final size:19
Alignment explanation
Indices: 84053--84159 Score: 79
Period size: 21 Copynumber: 5.2 Consensus size: 19
84043 TGCGATTTTT
84053 CAAATTCGTTGCGATAGTC
1 CAAATTCGTTGCGATAGTC
* * *
84072 GAAGTTCGCGTTGCGATTTATTC
1 CAAATT--CGTTGCGA--TAGTC
84095 CAAATTCGTTGCGATAGTC
1 CAAATTCGTTGCGATAGTC
* * *
84114 GAAGTTCGCGTTGCGATTTATTC
1 CAAATT--CGTTGCGA--TAGTC
*
84137 CAAATTCGTTGTGATAGTC
1 CAAATTCGTTGCGATAGTC
84156 CAAA
1 CAAA
84160 ATCGCAACGA
Statistics
Matches: 67, Mismatches: 13, Indels: 16
0.70 0.14 0.17
Matches are distributed among these distances:
19 20 0.30
21 31 0.46
23 16 0.24
ACGTcount: A:0.24, C:0.19, G:0.22, T:0.35
Consensus pattern (19 bp):
CAAATTCGTTGCGATAGTC
Found at i:84901 original size:21 final size:21
Alignment explanation
Indices: 84856--85040 Score: 143
Period size: 21 Copynumber: 8.8 Consensus size: 21
84846 AACTTCGACT
* *
84856 ATCGCAACGAACTTCGACT--
1 ATCGCAACGAACTTGGAATAA
* *
84875 ATCGCAATGAATTTGGAATAA
1 ATCGCAACGAACTTGGAATAA
* *
84896 ATCGCAACGCGAACTTCGACT--
1 ATCGCAA--CGAACTTGGAATAA
84917 ATCGCAACGAACTTGGAATAA
1 ATCGCAACGAACTTGGAATAA
*
84938 ATCGCAACGCGAACTTGGACT--
1 ATCGCAA--CGAACTTGGAATAA
*
84959 ATCGCAACGAATTTGGAATAA
1 ATCGCAACGAACTTGGAATAA
* * *
84980 ATAGCAACGCGAACTTCGACT--
1 ATCGCAA--CGAACTTGGAATAA
85001 ATCGCAACGAACTTGGAATAA
1 ATCGCAACGAACTTGGAATAA
85022 ATCGCAACGCGAACTTGGA
1 ATCGCAA--CGAACTTGGA
85041 CTATCGCAAT
Statistics
Matches: 130, Mismatches: 20, Indels: 28
0.73 0.11 0.16
Matches are distributed among these distances:
19 45 0.35
21 47 0.36
23 38 0.29
ACGTcount: A:0.36, C:0.23, G:0.20, T:0.21
Consensus pattern (21 bp):
ATCGCAACGAACTTGGAATAA
Found at i:84913 original size:42 final size:42
Alignment explanation
Indices: 84856--85049 Score: 320
Period size: 42 Copynumber: 4.7 Consensus size: 42
84846 AACTTCGACT
* *
84856 ATCGCAA--CGAACTTCGACTATCGCAATGAATTTGGAATAA
1 ATCGCAACGCGAACTTCGACTATCGCAACGAACTTGGAATAA
84896 ATCGCAACGCGAACTTCGACTATCGCAACGAACTTGGAATAA
1 ATCGCAACGCGAACTTCGACTATCGCAACGAACTTGGAATAA
* *
84938 ATCGCAACGCGAACTTGGACTATCGCAACGAATTTGGAATAA
1 ATCGCAACGCGAACTTCGACTATCGCAACGAACTTGGAATAA
*
84980 ATAGCAACGCGAACTTCGACTATCGCAACGAACTTGGAATAA
1 ATCGCAACGCGAACTTCGACTATCGCAACGAACTTGGAATAA
*
85022 ATCGCAACGCGAACTTGGACTATCGCAA
1 ATCGCAACGCGAACTTCGACTATCGCAA
85050 TGCGAATATG
Statistics
Matches: 143, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
40 7 0.05
42 136 0.95
ACGTcount: A:0.36, C:0.24, G:0.20, T:0.21
Consensus pattern (42 bp):
ATCGCAACGCGAACTTCGACTATCGCAACGAACTTGGAATAA
Found at i:86149 original size:38 final size:39
Alignment explanation
Indices: 86079--86190 Score: 124
Period size: 38 Copynumber: 2.9 Consensus size: 39
86069 TTTGAAATAG
*
86079 AAATATATTATTTAT-ACATTTATATTTGATTAAATATA-
1 AAATATATTATTTATGA-ATTTATATTCGATTAAATATAT
* *
86117 AAATACATTATTTATGAATTTATATTCAATTAAA-ATAT
1 AAATATATTATTTATGAATTTATATTCGATTAAATATAT
* * *
86155 GAATATATTA-TTACGAACTTATATTCGATTAGAATA
1 AAATATATTATTTATGAATTTATATTCGATTA-AATA
86191 CAATATTGTA
Statistics
Matches: 62, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
37 21 0.34
38 39 0.63
39 2 0.03
ACGTcount: A:0.45, C:0.05, G:0.05, T:0.45
Consensus pattern (39 bp):
AAATATATTATTTATGAATTTATATTCGATTAAATATAT
Found at i:86678 original size:3 final size:3
Alignment explanation
Indices: 86672--86705 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
86662 ATATATTTAA
86672 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
86706 TTCTATTTCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:91746 original size:17 final size:17
Alignment explanation
Indices: 91719--91751 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
91709 TTATACTGAG
91719 TATAGAATTGTATTTATT
1 TATAGAATTGT-TTTATT
91737 TATA-AATTGTTTTAT
1 TATAGAATTGTTTTAT
91752 GATTTTACAC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 6 0.40
18 4 0.27
ACGTcount: A:0.33, C:0.00, G:0.09, T:0.58
Consensus pattern (17 bp):
TATAGAATTGTTTTATT
Found at i:95847 original size:38 final size:38
Alignment explanation
Indices: 95796--95872 Score: 109
Period size: 38 Copynumber: 2.0 Consensus size: 38
95786 GAAATCTATG
* * *
95796 TCCCGAAGGACGTCATCTGTGTCCTGAATGACCTATCA
1 TCCCGAAGAACGTCATCTGTGTCCTAAAAGACCTATCA
* *
95834 TCCCGAAGAACGTCATTTGTTTCCTAAAAGACCTATCA
1 TCCCGAAGAACGTCATCTGTGTCCTAAAAGACCTATCA
95872 T
1 T
95873 ATATCCCGAA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (38 bp):
TCCCGAAGAACGTCATCTGTGTCCTAAAAGACCTATCA
Found at i:96137 original size:14 final size:14
Alignment explanation
Indices: 96118--96150 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
96108 TGTGCATGTA
*
96118 ATCATATAGCTTGT
1 ATCATATAGCTTAT
96132 ATCATATAGCTTAT
1 ATCATATAGCTTAT
96146 ATCAT
1 ATCAT
96151 TTCTCATGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.33, C:0.15, G:0.09, T:0.42
Consensus pattern (14 bp):
ATCATATAGCTTAT
Found at i:98207 original size:30 final size:31
Alignment explanation
Indices: 98173--98248 Score: 86
Period size: 31 Copynumber: 2.5 Consensus size: 31
98163 AAATTACTAT
* *
98173 TTTGGTCCCTAATATTTTC-AAAAT-TTATAC
1 TTTGGTCCCTAA-ACTTTCAAAAATCTTATAA
98203 TTTGGTCACC-AAACTTTCAAAAATCTTATAA
1 TTTGGTC-CCTAAACTTTCAAAAATCTTATAA
*
98234 TTTGGTCACTAAACT
1 TTTGGTCCCTAAACT
98249 AAATCCATTT
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
29 5 0.13
30 15 0.38
31 19 0.49
ACGTcount: A:0.33, C:0.18, G:0.08, T:0.41
Consensus pattern (31 bp):
TTTGGTCCCTAAACTTTCAAAAATCTTATAA
Found at i:98651 original size:32 final size:31
Alignment explanation
Indices: 98552--98656 Score: 102
Period size: 31 Copynumber: 3.4 Consensus size: 31
98542 TAAGGCGACC
* * * * * *
98552 CTTGAGTAGGCTCTGCGGCCCTGAGATATTT
1 CTTGGGTAGGCCCTACGGCCCCGAAATCTTT
*
98583 CTTGGGTAGGCCCTACGGCCCCGAGATCTTT
1 CTTGGGTAGGCCCTACGGCCCCGAAATCTTT
* ** *
98614 ATTGGGTAGGCCCTGTGGCTCCGAAAATCTTT
1 CTTGGGTAGGCCCTACGGCCCCG-AAATCTTT
98646 CTTGGGTAGGC
1 CTTGGGTAGGC
98657 TCCCAGGCCT
Statistics
Matches: 62, Mismatches: 11, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
31 45 0.73
32 17 0.27
ACGTcount: A:0.15, C:0.25, G:0.30, T:0.30
Consensus pattern (31 bp):
CTTGGGTAGGCCCTACGGCCCCGAAATCTTT
Found at i:122527 original size:33 final size:34
Alignment explanation
Indices: 122489--122554 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 34
122479 AGTTGGCAAG
122489 TTGGAAATTTCATCTTGGTTGGTGG-CAAACTTA
1 TTGGAAATTTCATCTTGGTTGGTGGCCAAACTTA
122522 TTGGAAATTTCATCTTGGTTGGTGGCCAAACTT
1 TTGGAAATTTCATCTTGGTTGGTGGCCAAACTT
122555 TGAATATGGG
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
33 25 0.78
34 7 0.22
ACGTcount: A:0.23, C:0.14, G:0.24, T:0.39
Consensus pattern (34 bp):
TTGGAAATTTCATCTTGGTTGGTGGCCAAACTTA
Found at i:133011 original size:2 final size:2
Alignment explanation
Indices: 133004--133054 Score: 102
Period size: 2 Copynumber: 25.5 Consensus size: 2
132994 ATTTTTCAAC
133004 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
133046 TA TA TA TA T
1 TA TA TA TA T
133055 TATTTTTCTC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:141105 original size:3 final size:3
Alignment explanation
Indices: 141099--141127 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
141089 AGTAAAAACA
141099 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
141128 CATAATATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:141397 original size:40 final size:40
Alignment explanation
Indices: 141336--141445 Score: 168
Period size: 40 Copynumber: 2.8 Consensus size: 40
141326 GGGTCGTCTA
* * *
141336 AGGGTTGACAC-GATTCTTACGTGATGAGGACGGTTGGTCG
1 AGGGATGACACAG-TTCATACGTGATGAGGACGGTCGGTCG
141376 AGGGATGACACAGTTCATACGTGATGAGGACGGTCGGTCG
1 AGGGATGACACAGTTCATACGTGATGAGGACGGTCGGTCG
*
141416 AGGGATGACACAGTTCCTACGTGATGAGGA
1 AGGGATGACACAGTTCATACGTGATGAGGA
141446 TGTCAGACCA
Statistics
Matches: 65, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
40 64 0.98
41 1 0.02
ACGTcount: A:0.25, C:0.16, G:0.36, T:0.23
Consensus pattern (40 bp):
AGGGATGACACAGTTCATACGTGATGAGGACGGTCGGTCG
Found at i:141546 original size:131 final size:131
Alignment explanation
Indices: 141381--141675 Score: 373
Period size: 131 Copynumber: 2.3 Consensus size: 131
141371 GGTCGAGGGA
* * * *
141381 TGACACAGTTCATACGTGATGAGGACGGTC-GGTCGAG-GGATGACACAGTTCCTACGTGATGAG
1 TGACACAGCTCCTACGTGATGAGGA-GATCTGGTCG-GTGGATAACACAGTTCCTACGTGATGAG
* * * * ** *
141444 GATGTCA-GACCATTATTAGGGATGATAACATGATTCCTACGTGATAAGGACAACTTATTATCTA
64 GACGACATG-CAATCATTAGGGATGATAACACAATTCCTACGTGATAAGGACAACTGATTATCTA
*
141508 ATGT
128 AGGT
* *
141512 TGACACAGCTCCTACCTGATGAGGAGATCTGGTCGGTGGATAACACGGTTCCTACGTGATGAGGA
1 TGACACAGCTCCTACGTGATGAGGAGATCTGGTCGGTGGATAACACAGTTCCTACGTGATGAGGA
** *
141577 CGACATGCAATCATTAGGGATGATAACACAATTCCTACGTGATAAGGACGGCTGGTTATCTAAGG
66 CGACATGCAATCATTAGGGATGATAACACAATTCCTACGTGATAAGGACAACTGATTATCTAAGG
141642 T
131 T
141643 TGACAC-GACTCCTACGTGATGAGGAGATCTGGT
1 TGACACAG-CTCCTACGTGATGAGGAGATCTGGT
141676 TTGTGGATGA
Statistics
Matches: 142, Mismatches: 18, Indels: 8
0.85 0.11 0.05
Matches are distributed among these distances:
130 5 0.04
131 136 0.96
132 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (131 bp):
TGACACAGCTCCTACGTGATGAGGAGATCTGGTCGGTGGATAACACAGTTCCTACGTGATGAGGA
CGACATGCAATCATTAGGGATGATAACACAATTCCTACGTGATAAGGACAACTGATTATCTAAGG
T
Found at i:142507 original size:85 final size:85
Alignment explanation
Indices: 142418--142599 Score: 213
Period size: 85 Copynumber: 2.1 Consensus size: 85
142408 TCTCGACTGA
* * * *
142418 AGTTATGCTGTGAATTTGACCT-TCCCTTGAGCTGAATGTAATTGAACTCGAAGGTCTTTGATGA
1 AGTTATGCTGTAAATTTGACATGT-CCTTGAGCTGAATGTAATCGAACTCGAAGGTCTTGGATGA
142482 CAAATAACCCTTCTCGCCTTG
65 CAAATAACCCTTCTCGCCTTG
* * * * * *
142503 AGTTATACTGTAAATTTGATATGTCTTTGAGCTGAGTGTTATCGAACTCGAAGGTCTTGGTTGAC
1 AGTTATGCTGTAAATTTGACATGTCCTTGAGCTGAATGTAATCGAACTCGAAGGTCTTGGATGAC
** *
142568 GGATAATCCTTCTCGCCTTG
66 AAATAACCCTTCTCGCCTTG
* *
142588 AGGTATGATGTA
1 AGTTATGCTGTA
142600 CTGTGTGGGG
Statistics
Matches: 80, Mismatches: 16, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
85 79 0.99
86 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.23, T:0.36
Consensus pattern (85 bp):
AGTTATGCTGTAAATTTGACATGTCCTTGAGCTGAATGTAATCGAACTCGAAGGTCTTGGATGAC
AAATAACCCTTCTCGCCTTG
Found at i:142852 original size:87 final size:87
Alignment explanation
Indices: 142728--142920 Score: 305
Period size: 87 Copynumber: 2.2 Consensus size: 87
142718 GAATTAGATA
* ** * * *
142728 TCCTTCGTCGTGAAAATGAAATCCAAGGGTTGAATTGCTGCTTGTGGACACAATATCCTTCGTCG
1 TCCTTCGTTGTGAAGTTGAAATCCAAGAGTTGAATTGCTACTTGTGGACACAATATCCTTCATCG
142793 TGAAGTTGAAATCGTGGATGGC
66 TGAAGTTGAAATCGTGGATGGC
* *
142815 TCCTTCGTTGTGAAGTTGAAATCCAAGAGTTGCATTGCTACTTGTGGGCACAATATCCTTCATCG
1 TCCTTCGTTGTGAAGTTGAAATCCAAGAGTTGAATTGCTACTTGTGGACACAATATCCTTCATCG
142880 TGAAGTTGAAATCGTGGATGGC
66 TGAAGTTGAAATCGTGGATGGC
*
142902 TCATTCGTTGTGAAGTTGA
1 TCCTTCGTTGTGAAGTTGA
142921 GCTTTAAATT
Statistics
Matches: 97, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
87 97 1.00
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (87 bp):
TCCTTCGTTGTGAAGTTGAAATCCAAGAGTTGAATTGCTACTTGTGGACACAATATCCTTCATCG
TGAAGTTGAAATCGTGGATGGC
Found at i:143071 original size:64 final size:63
Alignment explanation
Indices: 142985--143282 Score: 411
Period size: 64 Copynumber: 4.7 Consensus size: 63
142975 GCATTGTTTC
* *
142985 GAGTCCAATATCTTTCGATGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGTTGTTTGTT
1 GAGTCCAATATCATTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTG-AAAGTTGTTTGTT
* * *
143049 GAGTCTAATATCATTCGTTGTGAAGTTGAAATTGACTCTGAATGAAACTGGACAGTTGTTTGTT
1 GAGTCCAATATCATTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACT-GAAAGTTGTTTGTT
*
143113 GAGTCCAATATTC-TT-GCTTGTGAAGTTGAAATTGACTCTGAATGAAACTGTACAGTTGTTTGT
1 GAGTCCAATA-TCATTCGC-TGTGAAGTTGAAATTGACTCTGAATGAAACTG-AAAGTTGTTTGT
143176 T
63 T
* * * * * *
143177 GAGTCCAATATCCTTCACTGTGAGGTTGGAATTGACTTTGAATGAAACTTGAAAGTCGTTTGTT
1 GAGTCCAATATCATTCGCTGTGAAGTTGAAATTGACTCTGAATGAAAC-TGAAAGTTGTTTGTT
*
143241 GAGTCCTATATCATTCGCTGTGAAGTTGAAATTGACTCTGAA
1 GAGTCCAATATCATTCGCTGTGAAGTTGAAATTGACTCTGAA
143283 ATCTGAAAAA
Statistics
Matches: 209, Mismatches: 18, Indels: 14
0.87 0.07 0.06
Matches are distributed among these distances:
63 4 0.02
64 199 0.95
65 6 0.03
ACGTcount: A:0.28, C:0.13, G:0.22, T:0.37
Consensus pattern (63 bp):
GAGTCCAATATCATTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAGTTGTTTGTT
Found at i:143505 original size:32 final size:32
Alignment explanation
Indices: 143457--143545 Score: 115
Period size: 32 Copynumber: 2.8 Consensus size: 32
143447 TTCGTATCAG
* *
143457 GATGTTGAATCCCCAAAGATGCCCCAATATTC
1 GATGTTGAATCTCCAAAGATGCCCCAACATTC
* * *
143489 GATGTTAAATCTCCAAAAATGCCCCAACATTT
1 GATGTTGAATCTCCAAAGATGCCCCAACATTC
* *
143521 GATGTTGAATCTTCAAAGATACCCC
1 GATGTTGAATCTCCAAAGATGCCCC
143546 CATTGTTCCT
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 48 1.00
ACGTcount: A:0.34, C:0.26, G:0.13, T:0.27
Consensus pattern (32 bp):
GATGTTGAATCTCCAAAGATGCCCCAACATTC
Found at i:145104 original size:128 final size:128
Alignment explanation
Indices: 144875--145125 Score: 421
Period size: 128 Copynumber: 2.0 Consensus size: 128
144865 TCCCCAAGGG
* *
144875 GATAGATTTTCAGCTTTAATTTTATTCACATGAAAACAGTGTAATTAGTGCATGATAGAAGTATT
1 GATAGATTTTCAGCATTAATTTTATTCACATGAAAACAGTGTAATTAATGCATGATAGAAGTATT
**
144940 TTGAATGAATTATTCTTTCTACTTCTTGCTCCCAACATGTCTCAATGTTCAGGCTCCCAGGCA
66 TCAAATGAATTATTCTTTCTACTTCTTGCTCCCAACATGTCTCAATGTTCAGGCTCCCAGGCA
* *
145003 GATAGATTTTCAGGATTAATTTTATTCACATGAAAACAGTGTAATTAATGCATGATAGAATTATT
1 GATAGATTTTCAGCATTAATTTTATTCACATGAAAACAGTGTAATTAATGCATGATAGAAGTATT
* * *
145068 TCAAATGGATTCTTCTTTCTACTTCTTGCTCTCAACATGTCTCAATGTTCAGGCTCCC
66 TCAAATGAATTATTCTTTCTACTTCTTGCTCCCAACATGTCTCAATGTTCAGGCTCCC
145126 TGCGAAATAC
Statistics
Matches: 114, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
128 114 1.00
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (128 bp):
GATAGATTTTCAGCATTAATTTTATTCACATGAAAACAGTGTAATTAATGCATGATAGAAGTATT
TCAAATGAATTATTCTTTCTACTTCTTGCTCCCAACATGTCTCAATGTTCAGGCTCCCAGGCA
Found at i:147556 original size:16 final size:17
Alignment explanation
Indices: 147534--147571 Score: 69
Period size: 16 Copynumber: 2.3 Consensus size: 17
147524 AAACGTCTTT
147534 TAAAATCAATTTTAAGA
1 TAAAATCAATTTTAAGA
147551 -AAAATCAATTTTAAGA
1 TAAAATCAATTTTAAGA
147567 TAAAA
1 TAAAA
147572 ATTGGTCTGC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 16 0.80
17 4 0.20
ACGTcount: A:0.58, C:0.05, G:0.05, T:0.32
Consensus pattern (17 bp):
TAAAATCAATTTTAAGA
Found at i:150340 original size:26 final size:24
Alignment explanation
Indices: 150278--150340 Score: 60
Period size: 24 Copynumber: 2.6 Consensus size: 24
150268 CATTTTAATA
150278 AAAATAT-TAATTATTAAAATGTTT
1 AAAATATAT-ATTATTAAAATGTTT
*
150302 AAAATATAT-TTATTAATAT-TTCT
1 AAAATATATATTATTAAAATGTT-T
150325 AATAATATACTATTAT
1 AA-AATATA-TATTAT
150341 ATTTTTAATA
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
22 2 0.06
23 12 0.36
24 13 0.39
25 2 0.06
26 4 0.12
ACGTcount: A:0.48, C:0.03, G:0.02, T:0.48
Consensus pattern (24 bp):
AAAATATATATTATTAAAATGTTT
Found at i:150342 original size:22 final size:23
Alignment explanation
Indices: 150312--150355 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
150302 AAAATATATT
150312 TATTAATATTTCTAATAATATAC
1 TATTAATATTTCTAATAATATAC
* *
150335 TATT-ATATTTTTAATATTATA
1 TATTAATATTTCTAATAATATA
150356 ATAAAATAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.55
Consensus pattern (23 bp):
TATTAATATTTCTAATAATATAC
Found at i:150372 original size:32 final size:32
Alignment explanation
Indices: 150306--150385 Score: 83
Period size: 32 Copynumber: 2.5 Consensus size: 32
150296 ATGTTTAAAA
* * *
150306 TATATTTATTAATATTTCTAATAATATACTAT
1 TATATTTATTAATATTTATAATAAAATACAAT
150338 TATATTT-TTAATA-TTATAATAAAATAATCAAT
1 TATATTTATTAATATTTATAATAAAAT-A-CAAT
*
150370 TATATTATAATAATAT
1 TATATT-TATTAATAT
150386 AAGATATTAT
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
30 10 0.26
31 7 0.18
32 16 0.41
33 1 0.03
34 5 0.13
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (32 bp):
TATATTTATTAATATTTATAATAAAATACAAT
Found at i:154065 original size:59 final size:59
Alignment explanation
Indices: 153998--154110 Score: 199
Period size: 59 Copynumber: 1.9 Consensus size: 59
153988 TCAACAACTT
* *
153998 AATTAATTGATGCTTGGTGGTGCCGAAAAGACACCTTATCCAAGTATTTATTCATTCAG
1 AATTAATTGATGCTTGGTGGTACCGAAAAGAAACCTTATCCAAGTATTTATTCATTCAG
*
154057 AATTAATTGATGCTTTGTGGTACCGAAAAGAAACCTTATCCAAGTATTTATTCA
1 AATTAATTGATGCTTGGTGGTACCGAAAAGAAACCTTATCCAAGTATTTATTCA
154111 CTCATAGAAG
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
59 51 1.00
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.35
Consensus pattern (59 bp):
AATTAATTGATGCTTGGTGGTACCGAAAAGAAACCTTATCCAAGTATTTATTCATTCAG
Found at i:158671 original size:18 final size:19
Alignment explanation
Indices: 158637--158676 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
158627 CTTAATTTAC
*
158637 AATAGTTTAATAAACATTT
1 AATAGTTTAATAAACATAT
*
158656 AATATTTTAA-AAACATAT
1 AATAGTTTAATAAACATAT
158674 AAT
1 AAT
158677 TTAATTTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 10 0.53
19 9 0.47
ACGTcount: A:0.53, C:0.05, G:0.03, T:0.40
Consensus pattern (19 bp):
AATAGTTTAATAAACATAT
Found at i:163681 original size:45 final size:48
Alignment explanation
Indices: 163608--163705 Score: 139
Period size: 45 Copynumber: 2.1 Consensus size: 48
163598 TTTATTTTCG
*
163608 TTTTTCGAATAAATGCATGTGAACTAGATATCATGCGGTTAGG-TTTA
1 TTTTTCGAATAAATGCATGCGAACTAGATATCATGCGGTTAGGATTTA
* * *
163655 TTTTTCGAA-CAA-GCATGCGAATTAGATATCATGCGGTTAGGATTTC
1 TTTTTCGAATAAATGCATGCGAACTAGATATCATGCGGTTAGGATTTA
163701 TTTTT
1 TTTTT
163706 GTGAACAACA
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
45 27 0.59
46 10 0.22
47 9 0.20
ACGTcount: A:0.28, C:0.12, G:0.20, T:0.40
Consensus pattern (48 bp):
TTTTTCGAATAAATGCATGCGAACTAGATATCATGCGGTTAGGATTTA
Found at i:169858 original size:2 final size:2
Alignment explanation
Indices: 169851--169886 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
169841 ATCCTCCCAA
169851 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
169887 CTTCTCTTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:173438 original size:49 final size:50
Alignment explanation
Indices: 173385--173486 Score: 120
Period size: 49 Copynumber: 2.1 Consensus size: 50
173375 TAAATGAAAT
*
173385 AAATGA-AATAAAAAATAAAAAAAAG-GAAAAAGGAAAAA-GTAAAAAGGAA
1 AAATGAGAA-AAAAAATAAAAAAAAGTG-AAAAGGAAAAATGAAAAAAGGAA
* * * *
173434 AAATGAGAAAAAAAATGAAAAATAGTGAAAATGAAAAATGAAAAAATGAA
1 AAATGAGAAAAAAAATAAAAAAAAGTGAAAAGGAAAAATGAAAAAAGGAA
173484 AAA
1 AAA
173487 AGAAGAAAGA
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
49 30 0.67
50 15 0.33
ACGTcount: A:0.74, C:0.00, G:0.16, T:0.11
Consensus pattern (50 bp):
AAATGAGAAAAAAAATAAAAAAAAGTGAAAAGGAAAAATGAAAAAAGGAA
Found at i:173457 original size:72 final size:73
Alignment explanation
Indices: 173381--173531 Score: 161
Period size: 72 Copynumber: 2.1 Consensus size: 73
173371 AGAATAAATG
*
173381 AAATAAATG-AAATAAAAAATAAAAAAAAGGAAAAAGGAA-AAAGTA-AA-AAGGAAAAATGAGA
1 AAATAAATGAAAATAAAAAAT-AAAAAAAGGAAAAAAGAAGAAAG-AGAATAAGGAAAAATGA-A
173442 AAAA-AAATGAA
63 AAAATAAA-GAA
* * * * *
173453 AAAT-AGTGAAAATGAAAAATGAAAAAATGAAAAAAGAAGAAAGAGAATAATGAAAAATGAAAAA
1 AAATAAATGAAAATAAAAAATAAAAAAAGGAAAAAAGAAGAAAGAGAATAAGGAAAAATGAAAAA
*
173517 ATAGAGAA
66 ATAAAGAA
173525 AAATAAA
1 AAATAAA
173532 AGAGGGGTCA
Statistics
Matches: 65, Mismatches: 8, Indels: 11
0.77 0.10 0.13
Matches are distributed among these distances:
71 19 0.29
72 32 0.49
73 14 0.22
ACGTcount: A:0.73, C:0.00, G:0.16, T:0.11
Consensus pattern (73 bp):
AAATAAATGAAAATAAAAAATAAAAAAAGGAAAAAAGAAGAAAGAGAATAAGGAAAAATGAAAAA
ATAAAGAA
Found at i:173464 original size:16 final size:15
Alignment explanation
Indices: 173376--173518 Score: 74
Period size: 15 Copynumber: 9.8 Consensus size: 15
173366 CTTGAAGAAT
173376 AAATGAAATAAATG--
1 AAATGAAA-AAATGAA
*
173390 AAAT-AAAAAATAAAA
1 AAATGAAAAAAT-GAA
* * *
173405 AAAAGGAAAAAGGAA
1 AAATGAAAAAATGAA
* *
173420 AAA-GTAAAAAGGAA
1 AAATGAAAAAATGAA
*
173434 AAATG-AGAAA--AA
1 AAATGAAAAAATGAA
173446 AAATGAAAAATAGTG-A
1 AAATGAAAAA-A-TGAA
173462 AAATG-AAAAATGAAA
1 AAATGAAAAAATG-AA
173477 AAATGAAAAAA-GAA
1 AAATGAAAAAATGAA
*
173491 GAAA-GAGAATAATGAA
1 -AAATGA-AAAAATGAA
173507 AAATGAAAAAAT
1 AAATGAAAAAAT
173519 AGAGAAAAAT
Statistics
Matches: 102, Mismatches: 10, Indels: 33
0.70 0.07 0.23
Matches are distributed among these distances:
12 11 0.11
13 8 0.08
14 27 0.26
15 35 0.34
16 21 0.21
ACGTcount: A:0.72, C:0.00, G:0.16, T:0.12
Consensus pattern (15 bp):
AAATGAAAAAATGAA
Found at i:173481 original size:31 final size:30
Alignment explanation
Indices: 173443--173526 Score: 100
Period size: 31 Copynumber: 2.7 Consensus size: 30
173433 AAAATGAGAA
*
173443 AAAAAATGAAAAATAGTGAAAATGAAAAATG
1 AAAAAATGAAAAATAGAGAAAA-GAAAAATG
*
173474 AAAAAATGAAAAA-AGAAGAAAGAGAATAATG
1 AAAAAATGAAAAATAG-AGAAA-AGAAAAATG
173505 -AAAAATGAAAAAATAGAGAAAA
1 AAAAAATG-AAAAATAGAGAAAA
173527 ATAAAAGAGG
Statistics
Matches: 47, Mismatches: 2, Indels: 9
0.81 0.03 0.16
Matches are distributed among these distances:
30 10 0.21
31 34 0.72
32 3 0.06
ACGTcount: A:0.71, C:0.00, G:0.17, T:0.12
Consensus pattern (30 bp):
AAAAAATGAAAAATAGAGAAAAGAAAAATG
Found at i:173487 original size:23 final size:22
Alignment explanation
Indices: 173444--173516 Score: 62
Period size: 23 Copynumber: 3.2 Consensus size: 22
173434 AAATGAGAAA
**
173444 AAAAATGAAAAATAGTGAAAATG
1 AAAAATGAAAAAT-GAAAAAATG
173467 AAAAATGAAAAAATGAAAAAA-G
1 AAAAATG-AAAAATGAAAAAATG
173489 AAGAAA-GAGAATAATG-AAAAATG
1 AA-AAATGA-AA-AATGAAAAAATG
173512 AAAAA
1 AAAAA
173517 ATAGAGAAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 11
0.77 0.04 0.20
Matches are distributed among these distances:
21 1 0.02
22 14 0.33
23 22 0.51
24 6 0.14
ACGTcount: A:0.71, C:0.00, G:0.16, T:0.12
Consensus pattern (22 bp):
AAAAATGAAAAATGAAAAAATG
Found at i:173515 original size:6 final size:7
Alignment explanation
Indices: 173404--173516 Score: 81
Period size: 7 Copynumber: 15.7 Consensus size: 7
173394 AAAAAATAAA
*
173404 AAAAAGG
1 AAAAATG
*
173411 AAAAAGG
1 AAAAATG
173418 AAAAA-G
1 AAAAATG
*
173424 TAAAAAGG
1 -AAAAATG
173432 AAAAATG
1 AAAAATG
*
173439 AGAAA--
1 AAAAATG
173444 AAAAATG
1 AAAAATG
173451 AAAAATAG
1 AAAAAT-G
*
173459 TGAAAATG
1 -AAAAATG
173467 AAAAATG
1 AAAAATG
173474 AAAAAATG
1 -AAAAATG
*
173482 AAAAAAG
1 AAAAATG
173489 AAGAAA-G
1 AA-AAATG
173496 AGAATAATG
1 A-AA-AATG
173505 AAAAATG
1 AAAAATG
173512 AAAAA
1 AAAAA
173517 ATAGAGAAAA
Statistics
Matches: 89, Mismatches: 6, Indels: 22
0.76 0.05 0.19
Matches are distributed among these distances:
5 4 0.04
6 1 0.01
7 59 0.66
8 18 0.20
9 7 0.08
ACGTcount: A:0.72, C:0.00, G:0.19, T:0.10
Consensus pattern (7 bp):
AAAAATG
Found at i:174840 original size:55 final size:55
Alignment explanation
Indices: 174753--175299 Score: 764
Period size: 55 Copynumber: 9.9 Consensus size: 55
174743 AGCAAATCAT
* * *
174753 AAGGAATATAGAGCGGACCTGTTTGTTGAAGATTGTTTGAGTTCTATACTCTCTG
1 AAGGAATAGAGAGCGGACCCGTTTGTTGAAGATTGTTCGAGTTCTATACTCTCTG
*
174808 ATA-GAATAGGGAGCGGACCCGTTTGTTGAAGATTGTTCGAGTTCTATACTCTCTG
1 A-AGGAATAGAGAGCGGACCCGTTTGTTGAAGATTGTTCGAGTTCTATACTCTCTG
*
174863 AAGGAATAGAGAGCAGACCCGTTT-TATGAAGATTGTTCGAGTTCTATACTCTCTG
1 AAGGAATAGAGAGCGGACCCGTTTGT-TGAAGATTGTTCGAGTTCTATACTCTCTG
*
174918 AAGGAATAGAGAGCGGACCCGTTTGTTGAAGATTGTTCGAGTTATATACTCTCTG
1 AAGGAATAGAGAGCGGACCCGTTTGTTGAAGATTGTTCGAGTTCTATACTCTCTG
* * * *
174973 AAGGAATAGAGAGTGGACCCATTTGTTGAATATTGTTCGAGTTCTATACTCTCTA
1 AAGGAATAGAGAGCGGACCCGTTTGTTGAAGATTGTTCGAGTTCTATACTCTCTG
* *
175028 AAGGAATAGAGAGCGGGCCCGTTT-TATGAAGATTGTTTGAGTTCTATACTCTCTG
1 AAGGAATAGAGAGCGGACCCGTTTGT-TGAAGATTGTTCGAGTTCTATACTCTCTG
* **
175083 AAGGAATAAAGAGCGGACATGTTTGTTGAAGATTGTTCGAGTTCTATACTCTCTG
1 AAGGAATAGAGAGCGGACCCGTTTGTTGAAGATTGTTCGAGTTCTATACTCTCTG
* * *
175138 AAGGAATATAGAGCGGACCCGTTT-TATAAAGATTTTTCGAGTTCTATACTCTCTG
1 AAGGAATAGAGAGCGGACCCGTTTGT-TGAAGATTGTTCGAGTTCTATACTCTCTG
* *
175193 AATGAATATG-GAGCGGACCCGTTTGTTGAAGATTGTTCGAGTTCTATACTCCCTG
1 AAGGAATA-GAGAGCGGACCCGTTTGTTGAAGATTGTTCGAGTTCTATACTCTCTG
* * * * * *
175248 AACGAATAGGGAGTGGACCCGTTTATTGAAGATCGTTTGAG-TCTTATACTCT
1 AAGGAATAGAGAGCGGACCCGTTTGTTGAAGATTGTTCGAGTTC-TATACTCT
175300 GTTGAGTTAA
Statistics
Matches: 441, Mismatches: 40, Indels: 22
0.88 0.08 0.04
Matches are distributed among these distances:
54 7 0.02
55 430 0.98
56 4 0.01
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (55 bp):
AAGGAATAGAGAGCGGACCCGTTTGTTGAAGATTGTTCGAGTTCTATACTCTCTG
Found at i:180066 original size:20 final size:21
Alignment explanation
Indices: 180041--180080 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
180031 AGAACCCCAA
180041 GGGGGT-ATCGATTCCCCTGT
1 GGGGGTAATCGATTCCCCTGT
*
180061 GGGGGTGAATCGGTTCCCCT
1 GGGGGT-AATCGATTCCCCT
180081 TCAAAGGGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
22 11 0.65
ACGTcount: A:0.10, C:0.25, G:0.38, T:0.28
Consensus pattern (21 bp):
GGGGGTAATCGATTCCCCTGT
Found at i:180096 original size:23 final size:21
Alignment explanation
Indices: 180039--180121 Score: 69
Period size: 20 Copynumber: 3.9 Consensus size: 21
180029 ACAGAACCCC
* * *
180039 AAGGGGGTATCGATTCCCCTG
1 AAGGGGGAATCGGTTCCCCTA
**
180060 TGGGGGTGAATCGGTTCCCCTTCA
1 AAGGGG-GAATCGGTTCCCC-T-A
180084 AAGGGGGAATCGGTT-CCCTA
1 AAGGGGGAATCGGTTCCCCTA
* *
180104 AAGGGGGGATCGATTCCC
1 AAGGGGGAATCGGTTCCC
180122 TCTGCACCAA
Statistics
Matches: 49, Mismatches: 9, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
20 14 0.29
21 7 0.14
22 14 0.29
23 10 0.20
24 4 0.08
ACGTcount: A:0.19, C:0.23, G:0.35, T:0.23
Consensus pattern (21 bp):
AAGGGGGAATCGGTTCCCCTA
Found at i:180108 original size:20 final size:21
Alignment explanation
Indices: 180062--180123 Score: 72
Period size: 20 Copynumber: 2.9 Consensus size: 21
180052 TTCCCCTGTG
180062 GGGGTGAATCGGTTCCCCTTCAAA
1 GGGG-GAATCGGTT-CCC-TCAAA
180086 GGGGGAATCGGTTCCCT-AAA
1 GGGGGAATCGGTTCCCTCAAA
* *
180106 GGGGGGATCGATTCCCTC
1 GGGGGAATCGGTTCCCTC
180124 TGCACCAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
20 18 0.51
21 1 0.03
22 3 0.09
23 9 0.26
24 4 0.11
ACGTcount: A:0.19, C:0.24, G:0.34, T:0.23
Consensus pattern (21 bp):
GGGGGAATCGGTTCCCTCAAA
Found at i:183920 original size:22 final size:21
Alignment explanation
Indices: 183878--183917 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
183868 GAGTTTGTTT
*
183878 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTAAAACA
183899 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
183918 ACAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:188265 original size:20 final size:21
Alignment explanation
Indices: 188219--188279 Score: 79
Period size: 20 Copynumber: 2.9 Consensus size: 21
188209 TTCCCCTGTG
188219 GGGGGAATCGGTTCCCCTTCAAA
1 GGGGGAATCGGTT-CCC-TCAAA
188242 GGGGGAATCGGTTCCCTC-AA
1 GGGGGAATCGGTTCCCTCAAA
* *
188262 GGGGGGATCGATTCCCTC
1 GGGGGAATCGGTTCCCTC
188280 TGCACCAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
20 18 0.50
21 2 0.06
22 3 0.08
23 13 0.36
ACGTcount: A:0.18, C:0.26, G:0.34, T:0.21
Consensus pattern (21 bp):
GGGGGAATCGGTTCCCTCAAA
Found at i:197298 original size:14 final size:14
Alignment explanation
Indices: 197279--197308 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
197269 AAAATCACCA
197279 ATCAGATAAGAGAC
1 ATCAGATAAGAGAC
197293 ATCAGATAAGAGAC
1 ATCAGATAAGAGAC
197307 AT
1 AT
197309 GATCCTCGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.50, C:0.13, G:0.20, T:0.17
Consensus pattern (14 bp):
ATCAGATAAGAGAC
Found at i:201727 original size:23 final size:23
Alignment explanation
Indices: 201697--201743 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
201687 TAAATTTATC
*
201697 ATTACTCAGATTTAGCTCCTAGT
1 ATTACTCAGATTTAGCACCTAGT
201720 ATTACTCAGATTTAGCACCTAGT
1 ATTACTCAGATTTAGCACCTAGT
201743 A
1 A
201744 ACTTGTAGCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.13, T:0.36
Consensus pattern (23 bp):
ATTACTCAGATTTAGCACCTAGT
Found at i:210465 original size:4 final size:4
Alignment explanation
Indices: 210456--210532 Score: 115
Period size: 4 Copynumber: 20.0 Consensus size: 4
210446 AAAAGTTACA
*
210456 AAAG AAAG AAAG AAAG AAAG AAAG GAAG AAAG AAAG AAAG AAAG -AAG
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG
*
210503 AAAG CAA- AAAG AAAG AAAG AAAG -AAG AAAG
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG
210533 CAAAAGCATG
Statistics
Matches: 66, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
3 8 0.12
4 58 0.88
ACGTcount: A:0.73, C:0.01, G:0.26, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:210817 original size:31 final size:31
Alignment explanation
Indices: 210781--210839 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
210771 AACTTAAAAG
*
210781 AGTTTTGTAATACTGAAATTTAAATAATTTT
1 AGTTTTATAATACTGAAATTTAAATAATTTT
210812 AGTTTTATAATACTGAAATTTAAATAAT
1 AGTTTTATAATACTGAAATTTAAATAAT
210840 CCATACAACT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.42, C:0.03, G:0.08, T:0.46
Consensus pattern (31 bp):
AGTTTTATAATACTGAAATTTAAATAATTTT
Found at i:210888 original size:22 final size:22
Alignment explanation
Indices: 210863--211421 Score: 815
Period size: 22 Copynumber: 25.5 Consensus size: 22
210853 ATAATAGATT
210863 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
210885 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
*
210907 TTTTAAAATAAATCAATCCATG
1 TTTTAAAATAAATCAATCCATA
** *
210929 TTTTAAAATAAAAT-TTTTCATA
1 TTTTAAAAT-AAATCAATCCATA
210951 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
***
210973 TTTTAAAATAAATTTTTCCATA
1 TTTTAAAATAAATCAATCCATA
210995 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
211017 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
* *
211039 TTTTAAAACAAATCTATCCATA
1 TTTTAAAATAAATCAATCCATA
211061 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
***
211083 TTTTAAAATAAATTTTTCCATA
1 TTTTAAAATAAATCAATCCATA
211105 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
** *
211127 TTTTAAAATAAAAT-TTTTCATA
1 TTTTAAAAT-AAATCAATCCATA
211149 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
***
211171 TTTTAAAATAAATTTTTCCATA
1 TTTTAAAATAAATCAATCCATA
211193 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
*
211215 TTTTAAAATAAATCAATTCATA
1 TTTTAAAATAAATCAATCCATA
211237 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
***
211259 TTTTAAAATAAATTTTTCCATA
1 TTTTAAAATAAATCAATCCATA
211281 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
211303 TTTTAAAATAAATCAA-CTCATA
1 TTTTAAAATAAATCAATC-CATA
*
211325 TTTTAAAATAAATCAATTCATA
1 TTTTAAAATAAATCAATCCATA
211347 TTTTAAAATAAATCAATCCAT-
1 TTTTAAAATAAATCAATCCATA
*
211368 TTTT-AAA-AAATCAATTCATA
1 TTTTAAAATAAATCAATCCATA
* *
211388 TTTTAAAATATATCAATTCATA
1 TTTTAAAATAAATCAATCCATA
211410 TTTTAAAATAAA
1 TTTTAAAATAAA
211422 ATTTTGAAAT
Statistics
Matches: 479, Mismatches: 49, Indels: 18
0.88 0.09 0.03
Matches are distributed among these distances:
19 11 0.02
20 7 0.01
21 16 0.03
22 437 0.91
23 8 0.02
ACGTcount: A:0.48, C:0.11, G:0.00, T:0.41
Consensus pattern (22 bp):
TTTTAAAATAAATCAATCCATA
Found at i:215703 original size:180 final size:182
Alignment explanation
Indices: 215245--215716 Score: 657
Period size: 184 Copynumber: 2.6 Consensus size: 182
215235 TCGATCCAAA
* * **
215245 TTAAAAA-TGTATCGATCCACAACGATATAAAAGGTAAAACTATGACAAAACCGGTATTGAAATG
1 TTAAAAACTGTATCGATCCACAACGATATAAAAGGTAAAAATATGATAAAACCGGTATCAAAATG
* * *
215309 ATAAAA-TCGGTAAAGCGGTACCGGATATATTTAAAGTGTCGGTACTTTAATATAAGGATCGACA
66 ATAAAACT-GGTAAAACGGTACCGGATATATTGAAAGTGTCGATACTTTAATATAAGGATCGACA
* *
215373 CTTCGTTAATTTAAAAGAGAAGCAATTTTAGCGCCTATAAAGTGTCGATACTT
130 CTTCGTGAATTTAAAAGAGAAACAATTTTAGCGCCTATAAAGTGTCGATACTT
** * *
215426 TTAAAAAAAAC-GTATATATCCACAACGATATAACAGGTAAAAATATGATAAAATCGGTATCAAA
1 TT---AAAAACTGTATCGATCCACAACGATATAAAAGGTAAAAATATGATAAAACCGGTATCAAA
* * * * *
215490 AAGATGAAACCGATAAAACGCTACCGGATATATTGAAAGTGTCGATACTTT-ATATAAGGATCGA
63 ATGATAAAACTGGTAAAACGGTACCGGATATATTGAAAGTGTCGATACTTTAATATAAGGATCGA
* *
215554 CACTTTGTGAATTTAAAAGAGAAACAGTTTTAGCGCCTATAAAGTGTCGATAC-T
128 CACTTCGTGAATTTAAAAGAGAAACAATTTTAGCGCCTATAAAGTGTCGATACTT
* ** *
215608 TTAAAAACTGTATCGATCCACAATGATATAATGGGTAAAAATATGATAAAACCGATATCAAAATG
1 TTAAAAACTGTATCGATCCACAACGATATAAAAGGTAAAAATATGATAAAACCGGTATCAAAATG
215673 ATAAAACTGGTAAAACGGTACCGGATATATTGAAAGTGTCGATA
66 ATAAAACTGGTAAAACGGTACCGGATATATTGAAAGTGTCGATA
215717 TTTTCGTAAG
Statistics
Matches: 253, Mismatches: 32, Indels: 13
0.85 0.11 0.04
Matches are distributed among these distances:
179 6 0.02
180 88 0.35
181 2 0.01
182 3 0.01
183 62 0.25
184 92 0.36
ACGTcount: A:0.42, C:0.13, G:0.17, T:0.27
Consensus pattern (182 bp):
TTAAAAACTGTATCGATCCACAACGATATAAAAGGTAAAAATATGATAAAACCGGTATCAAAATG
ATAAAACTGGTAAAACGGTACCGGATATATTGAAAGTGTCGATACTTTAATATAAGGATCGACAC
TTCGTGAATTTAAAAGAGAAACAATTTTAGCGCCTATAAAGTGTCGATACTT
Found at i:217892 original size:21 final size:21
Alignment explanation
Indices: 217862--217914 Score: 97
Period size: 21 Copynumber: 2.5 Consensus size: 21
217852 ATATCAGCAT
217862 AAAGTGTCGATACCTTTTCAA
1 AAAGTGTCGATACCTTTTCAA
*
217883 AAAGTATCGATACCTTTTCAA
1 AAAGTGTCGATACCTTTTCAA
217904 AAAGTGTCGAT
1 AAAGTGTCGAT
217915 TGAAAAAACA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.32
Consensus pattern (21 bp):
AAAGTGTCGATACCTTTTCAA
Found at i:218371 original size:183 final size:184
Alignment explanation
Indices: 217881--218398 Score: 886
Period size: 179 Copynumber: 2.8 Consensus size: 184
217871 ATACCTTTTC
*
217881 AAAAAGTATCGATACCTTTTCAAAAAGTGTCGATTGAAAAAACATCAGAACCCATAATTATAATG
1 AAAAAGTGTCGATACCTTTTCAAAAAGTGTCGATTGAAAAAACATCAGAACCCATAATTATAATG
217946 TAATAGGTAATTTTGTAATATAACCGGTATAGATATACCGGTTTTATGAGAGAATAGGTCTACAA
66 TAATAGGTAATTTTGTAATATAACCGGTATAGATATACCGGTTTTATGAGAGAATAGGTCTACAA
* *
218011 CCTATATCGACATTTTTTAATATTGTGTCGCTACTTTATGTCCAAAATGGATGA
131 CCTATATCGACACTTTTTAATATTGTGTCACTACTTTATGTCCAAAATGGATGA
218065 AAAAAGTGTCGATACCTTTTCAAAAAGTGTCGATTG-AAAAA-A-C--AACCCATAATTATAATG
1 AAAAAGTGTCGATACCTTTTCAAAAAGTGTCGATTGAAAAAACATCAGAACCCATAATTATAATG
* * * *
218125 TAATAGGTAATTTTGTAATATAACCGTTATAGATATACCGATTTTATGAGATAATATGTCTACAA
66 TAATAGGTAATTTTGTAATATAACCGGTATAGATATACCGGTTTTATGAGAGAATAGGTCTACAA
* *
218190 CCTATATTGACACTTTTTAATATTGTGTCACTACTTTATGTCCAGAATGGATG-
131 CCTATATCGACACTTTTTAATATTGTGTCACTACTTTATGTCCAAAATGGATGA
218243 AAAAAGTGTCGATACCTTTTCAAAAAGTGTCGATTGAAAAAACATCAGAACCCATAATTATAATG
1 AAAAAGTGTCGATACCTTTTCAAAAAGTGTCGATTGAAAAAACATCAGAACCCATAATTATAATG
* *
218308 TAATAGGTAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATAAGAGAATAGGTCTACAA
66 TAATAGGTAATTTTGTAATATAACCGGTATAGATATACCGGTTTTATGAGAGAATAGGTCTACAA
*
218373 CCTATATCGATACTTTTTAATATTGT
131 CCTATATCGACACTTTTTAATATTGT
218399 ATCCATACTT
Statistics
Matches: 312, Mismatches: 17, Indels: 11
0.92 0.05 0.03
Matches are distributed among these distances:
178 36 0.12
179 132 0.42
180 1 0.00
181 2 0.01
182 1 0.00
183 105 0.34
184 35 0.11
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.34
Consensus pattern (184 bp):
AAAAAGTGTCGATACCTTTTCAAAAAGTGTCGATTGAAAAAACATCAGAACCCATAATTATAATG
TAATAGGTAATTTTGTAATATAACCGGTATAGATATACCGGTTTTATGAGAGAATAGGTCTACAA
CCTATATCGACACTTTTTAATATTGTGTCACTACTTTATGTCCAAAATGGATGA
Found at i:221589 original size:23 final size:23
Alignment explanation
Indices: 221563--221612 Score: 91
Period size: 23 Copynumber: 2.2 Consensus size: 23
221553 ATAGATAAAA
221563 ATATAATGTAATAAGTAACGCTT
1 ATATAATGTAATAAGTAACGCTT
*
221586 ATATAATGTAATATGTAACGCTT
1 ATATAATGTAATAAGTAACGCTT
221609 ATAT
1 ATAT
221613 TGTAAAGTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.42, C:0.08, G:0.12, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAAGTAACGCTT
Found at i:226883 original size:19 final size:19
Alignment explanation
Indices: 226854--226912 Score: 100
Period size: 19 Copynumber: 3.1 Consensus size: 19
226844 ACGAAACATC
*
226854 ACGAAACTAATCAGTAAAA
1 ACGAGACTAATCAGTAAAA
*
226873 ATGAGACTAATCAGTAAAA
1 ACGAGACTAATCAGTAAAA
226892 ACGAGACTAATCAGTAAAA
1 ACGAGACTAATCAGTAAAA
226911 AC
1 AC
226913 AATCTAATAA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
19 37 1.00
ACGTcount: A:0.54, C:0.15, G:0.14, T:0.17
Consensus pattern (19 bp):
ACGAGACTAATCAGTAAAA
Found at i:230317 original size:14 final size:14
Alignment explanation
Indices: 230298--230478 Score: 61
Period size: 14 Copynumber: 12.3 Consensus size: 14
230288 ATGTGTATAA
230298 CTTAAACCCTAAAC
1 CTTAAACCCTAAAC
***
230312 CTTAAATTTTAAAC
1 CTTAAACCCTAAAC
* * **
230326 CCTAATCTTTAATA-
1 CTTAAACCCTAA-AC
230340 CTTAAACCCTAAAC
1 CTTAAACCCTAAAC
230354 CTTAAACTCC-AAAC
1 CTTAAAC-CCTAAAC
* *
230368 CTTAAATCCT-ATC
1 CTTAAACCCTAAAC
* *
230381 ACATAAACTCTAAA-
1 -CTTAAACCCTAAAC
*
230395 GTCTAAACCCTAAACC
1 CT-TAAACCCTAAA-C
230411 CTTAAAATCCTATCACATAAA-
1 CTT-AAA--C---C-C-TAAAC
230432 CTCTAAACCCTAAATC
1 CT-TAAACCCTAAA-C
230448 C-TAAACCCTAAA-
1 CTTAAACCCTAAAC
230460 CTATAAACCCTAAAC
1 CT-TAAACCCTAAAC
230475 CTTA
1 CTTA
230479 TCACATAATT
Statistics
Matches: 124, Mismatches: 20, Indels: 46
0.65 0.11 0.24
Matches are distributed among these distances:
12 1 0.01
13 5 0.04
14 90 0.73
15 8 0.06
16 6 0.05
18 1 0.01
19 1 0.01
21 6 0.05
22 2 0.02
23 4 0.03
ACGTcount: A:0.43, C:0.30, G:0.01, T:0.27
Consensus pattern (14 bp):
CTTAAACCCTAAAC
Found at i:230352 original size:7 final size:7
Alignment explanation
Indices: 230342--230475 Score: 67
Period size: 7 Copynumber: 18.9 Consensus size: 7
230332 CTTTAATACT
230342 TAAACCC
1 TAAACCC
*
230349 TAAACCT
1 TAAACCC
230356 TAAACTCC
1 TAAAC-CC
*
230364 -AAACCT
1 TAAACCC
*
230370 TAAATCC
1 TAAACCC
* *
230377 T-ATCACA
1 TAAAC-CC
*
230384 TAAACTC
1 TAAACCC
**
230391 TAAAGTC
1 TAAACCC
230398 TAAACCC
1 TAAACCC
230405 TAAACCC
1 TAAACCC
*
230412 TTAAAATCC
1 -T-AAACCC
* *
230421 T-ATCACA
1 TAAAC-CC
*
230428 TAAACTC
1 TAAACCC
230435 TAAACCC
1 TAAACCC
*
230442 TAAATCC
1 TAAACCC
230449 TAAACCC
1 TAAACCC
**
230456 TAAACTA
1 TAAACCC
230463 TAAACCC
1 TAAACCC
230470 TAAACC
1 TAAACC
230476 TTATCACATA
Statistics
Matches: 91, Mismatches: 28, Indels: 16
0.67 0.21 0.12
Matches are distributed among these distances:
6 3 0.03
7 76 0.84
8 7 0.08
9 5 0.05
ACGTcount: A:0.44, C:0.32, G:0.01, T:0.23
Consensus pattern (7 bp):
TAAACCC
Found at i:230368 original size:21 final size:20
Alignment explanation
Indices: 230296--230361 Score: 87
Period size: 21 Copynumber: 3.2 Consensus size: 20
230286 TCATGTGTAT
230296 AACTTAAACCCTAAACCTTA
1 AACTTAAACCCTAAACCTTA
* * *
230316 AATTTTAAACCCTAATCTTTA
1 AA-CTTAAACCCTAAACCTTA
230337 ATACTTAAACCCTAAACCTTA
1 A-ACTTAAACCCTAAACCTTA
230358 AACT
1 AACT
230362 CCAAACCTTA
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
20 5 0.13
21 32 0.84
22 1 0.03
ACGTcount: A:0.42, C:0.26, G:0.00, T:0.32
Consensus pattern (20 bp):
AACTTAAACCCTAAACCTTA
Found at i:230371 original size:28 final size:28
Alignment explanation
Indices: 230340--230474 Score: 78
Period size: 28 Copynumber: 4.8 Consensus size: 28
230330 ATCTTTAATA
*
230340 CTTAAACCCTAAACCTTAAACTCCAAAC
1 CTTAAACCCTAAACCCTAAACTCCAAAC
* * * *
230368 CTTAAATCCT-ATCACATAAACTCTAAA-
1 CTTAAACCCTAAAC-CCTAAACTCCAAAC
* * * *
230395 GTCTAAACCCTAAACCCTTAAAATCCTATC
1 CT-TAAACCCTAAACCC-TAAACTCCAAAC
* *
230425 ACATAAACTCTAAACCCTAAA-TCCTAAAC
1 -CTTAAACCCTAAACCCTAAACTCC-AAAC
* **
230454 CCTAAACTATAAACCCTAAAC
1 CTTAAACCCTAAACCCTAAAC
230475 CTTATCACAT
Statistics
Matches: 80, Mismatches: 19, Indels: 15
0.70 0.17 0.13
Matches are distributed among these distances:
27 3 0.04
28 49 0.61
29 15 0.19
30 13 0.16
ACGTcount: A:0.44, C:0.32, G:0.01, T:0.24
Consensus pattern (28 bp):
CTTAAACCCTAAACCCTAAACTCCAAAC
Found at i:230430 original size:44 final size:43
Alignment explanation
Indices: 230342--230456 Score: 153
Period size: 44 Copynumber: 2.7 Consensus size: 43
230332 CTTTAATACT
* *
230342 TAAACCCTAAACCTTAAACTCC-AAA-CCTTAAATCCTATCACA
1 TAAACTCTAAACCCTAAAC-CCTAAACCCTTAAATCCTATCACA
**
230384 TAAACTCTAAAGTCTAAACCCTAAACCCTTAAAATCCTATCACA
1 TAAACTCTAAACCCTAAACCCTAAACCCTT-AAATCCTATCACA
*
230428 TAAACTCTAAACCCTAAATCCTAAACCCT
1 TAAACTCTAAACCCTAAACCCTAAACCCT
230457 AAACTATAAA
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
41 2 0.03
42 18 0.29
43 4 0.06
44 39 0.62
ACGTcount: A:0.43, C:0.32, G:0.01, T:0.24
Consensus pattern (43 bp):
TAAACTCTAAACCCTAAACCCTAAACCCTTAAATCCTATCACA
Found at i:233019 original size:177 final size:177
Alignment explanation
Indices: 232723--233076 Score: 708
Period size: 177 Copynumber: 2.0 Consensus size: 177
232713 TCACCGGAGG
232723 TGTCCACTGTGGACCCTGTGAAAGATCCGATGGGCTACTTAAAAAGGGCCCAGCACCATCAGATG
1 TGTCCACTGTGGACCCTGTGAAAGATCCGATGGGCTACTTAAAAAGGGCCCAGCACCATCAGATG
232788 CAGAATATTGATGATTGTAAAGAAGGTTTCTCCTCACCCAGCCCCTACTTTCTTTACTGTTTGGA
66 CAGAATATTGATGATTGTAAAGAAGGTTTCTCCTCACCCAGCCCCTACTTTCTTTACTGTTTGGA
232853 GATGTAGAAGATTCATACAGTTGATTCCCATCATATGAACCATATGA
131 GATGTAGAAGATTCATACAGTTGATTCCCATCATATGAACCATATGA
232900 TGTCCACTGTGGACCCTGTGAAAGATCCGATGGGCTACTTAAAAAGGGCCCAGCACCATCAGATG
1 TGTCCACTGTGGACCCTGTGAAAGATCCGATGGGCTACTTAAAAAGGGCCCAGCACCATCAGATG
232965 CAGAATATTGATGATTGTAAAGAAGGTTTCTCCTCACCCAGCCCCTACTTTCTTTACTGTTTGGA
66 CAGAATATTGATGATTGTAAAGAAGGTTTCTCCTCACCCAGCCCCTACTTTCTTTACTGTTTGGA
233030 GATGTAGAAGATTCATACAGTTGATTCCCATCATATGAACCATATGA
131 GATGTAGAAGATTCATACAGTTGATTCCCATCATATGAACCATATGA
233077 CAGTCCATCG
Statistics
Matches: 177, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
177 177 1.00
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (177 bp):
TGTCCACTGTGGACCCTGTGAAAGATCCGATGGGCTACTTAAAAAGGGCCCAGCACCATCAGATG
CAGAATATTGATGATTGTAAAGAAGGTTTCTCCTCACCCAGCCCCTACTTTCTTTACTGTTTGGA
GATGTAGAAGATTCATACAGTTGATTCCCATCATATGAACCATATGA
Found at i:235065 original size:3 final size:3
Alignment explanation
Indices: 235048--235103 Score: 57
Period size: 3 Copynumber: 20.0 Consensus size: 3
235038 TTACAAAAAC
* * *
235048 ATT A-T ATT A-T ATT ATT A-T ATT ATT ATT GTG ATT ATC A-T ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
235092 ATT ATT ATT ATT
1 ATT ATT ATT ATT
235104 TTAATATATA
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
2 7 0.16
3 36 0.84
ACGTcount: A:0.34, C:0.02, G:0.04, T:0.61
Consensus pattern (3 bp):
ATT
Done.