Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001569.1 Hibiscus syriacus cultivar Beakdansim tig00003118_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  165673

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7941--7975
3
11.7
3
93
0
61
65
0
2
31
1.07
26084--26113
2
15.0
2
100
0
60
50
0
0
50
1.00
33393--33429
16
2.2
17
95
4
67
27
2
0
70
1.01
33393--33440
16
2.9
16
87
3
51
27
4
0
68
1.07
36343--36400
26
2.1
28
84
6
75
51
6
15
25
1.68
50524--50562
6
6.7
6
97
2
71
0
17
51
30
1.46
50626--50700
22
3.5
22
73
10
84
38
26
17
17
1.92
51303--51331
12
2.4
12
100
0
58
37
10
10
41
1.73
51662--51706
23
2.0
23
90
0
72
51
4
6
37
1.49
62496--62565
31
2.3
31
87
0
95
30
14
11
44
1.80
63339--63374
2
18.0
2
100
0
72
50
0
0
50
1.00
64711--64744
18
1.9
17
88
5
50
67
0
0
32
0.91
69181--69236
20
2.8
20
86
0
85
32
30
17
19
1.95
69179--69244
20
3.3
20
82
0
78
31
31
16
19
1.94
69487--69693
103
2.0
103
98
0
396
46
14
16
22
1.83
72262--72353
29
3.1
29
75
3
94
39
8
3
48
1.50
72274--72367
30
3.1
30
77
7
93
35
10
5
48
1.60
72566--72687
60
2.0
60
80
3
138
45
2
13
37
1.57
79412--79458
22
2.1
21
81
14
51
63
6
4
25
1.36
79453--79487
10
3.5
10
92
0
52
80
0
0
20
0.72
79451--79489
12
3.5
11
86
6
53
82
0
0
17
0.68
86207--86265
22
2.6
21
82
12
73
33
3
1
61
1.23
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90812--90858
19
2.5
18
83
10
67
68
0
6
25
1.13
92210--92244
2
17.5
2
100
0
70
48
0
0
51
1.00
92303--92351
2
24.5
2
100
0
98
48
0
0
51
1.00
92374--92398
12
2.1
12
100
0
50
24
8
0
68
1.16
92533--92579
21
2.2
21
88
3
67
27
2
0
70
0.99
92521--92575
20
2.7
19
81
10
65
29
1
0
69
0.99
92523--92605
27
2.8
30
80
12
91
26
2
0
71
0.99
92523--92579
22
2.6
22
83
2
71
28
1
0
70
0.98
92544--92605
21
2.9
21
82
4
61
22
1
0
75
0.88
97318--97369
16
3.2
16
82
15
63
82
3
13
0
0.80
97311--97381
18
4.0
17
74
20
65
80
7
11
1
0.97
98931--100198
106
12.0
106
90
1
1899
34
24
18
22
1.96
100949--101052
37
2.8
37
86
0
136
40
13
14
31
1.85
101452--101481
2
15.0
2
92
0
51
46
0
3
50
1.18
101601--101626
13
2.0
13
100
0
52
23
7
0
69
1.14
101757--101803
18
2.6
18
86
3
58
27
2
0
70
0.99
101773--101818
9
4.8
10
86
5
60
21
0
0
78
0.76
101782--101832
9
5.9
9
79
6
52
21
1
0
76
0.88
101767--101817
18
2.8
18
85
5
59
23
1
0
74
0.92
103606--103639
17
2.0
17
100
0
68
41
0
11
47
1.40
103660--103711
22
2.3
23
87
9
72
48
1
1
48
1.24
118181--118214
2
17.5
2
93
6
61
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
123318--123384
3
23.0
3
78
6
75
65
0
0
34
0.93
124637--124711
10
7.7
10
69
21
61
56
21
12
10
1.66
124641--124705
16
4.1
16
89
0
103
55
23
12
9
1.65
124940--124991
11
4.6
11
88
4
77
28
25
19
26
1.98
126064--126102
19
2.1
18
85
4
51
58
2
0
38
1.12
127065--127131
19
3.5
19
97
0
125
28
17
32
20
1.96
127744--127796
18
2.9
18
100
0
106
16
22
33
26
1.96
132039--132219
21
8.6
21
80
9
99
22
18
22
37
1.95
132064--132356
42
7.2
42
78
10
331
22
18
20
38
1.93
132085--132252
21
8.0
21
79
10
173
23
17
17
40
1.91
132239--132263
11
2.3
11
100
0
50
36
16
0
48
1.46
132176--132314
74
1.9
74
90
0
224
23
17
18
39
1.92
132134--132369
116
2.0
116
95
0
427
23
17
19
39
1.92
132285--132419
63
2.1
63
95
0
243
20
17
21
40
1.91
132250--132419
21
8.1
21
73
14
109
22
17
20
40
1.92
134542--134621
30
2.6
31
75
11
83
46
1
6
46
1.36
134591--134681
47
1.9
47
88
4
139
47
1
6
45
1.36
139012--139053
19
2.3
19
88
12
61
59
4
0
35
1.19
141756--141832
31
2.5
31
78
2
82
27
29
27
15
1.96
145728--145885
79
2.0
80
85
8
214
45
10
4
39
1.59
153763--153832
32
2.2
32
100
0
140
44
21
10
24
1.82
154868--154902
18
1.9
18
88
11
54
25
34
20
20
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
165586--165632
14
3.3
15
85
8
62
36
8
17
38
1.80
165615--165673
19
3.0
20
87
7
95
40
10
13
35
1.78

Tables:   1

The End!