Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000157.1 Hibiscus syriacus cultivar Beakdansim tig00000279_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101067

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
499--591
41
2.3
42
90
5
154
45
7
1
46
1.38
6457--6490
12
2.8
12
86
0
50
29
0
20
50
1.49
11124--11150
5
5.4
5
100
0
54
22
55
22
0
1.44
15295--15838
271
2.0
271
86
1
768
38
13
15
32
1.86
16942--17031
44
2.0
44
97
0
171
21
8
12
57
1.61
17578--17605
2
14.0
2
100
0
56
50
0
0
50
1.00
20878--20955
30
2.6
30
77
4
86
32
15
11
41
1.83
23031--23121
42
2.2
41
78
11
96
51
1
4
42
1.29
29395--29423
6
4.8
6
100
0
58
86
0
0
13
0.58
34798--34835
12
3.2
12
92
0
58
23
0
5
71
1.07
40794--40827
16
2.1
16
89
10
52
11
17
0
70
1.16
47832--47878
21
2.2
21
85
7
60
40
17
12
29
1.86
59685--59758
33
2.2
33
90
0
112
37
18
17
25
1.93
67044--67082
16
2.4
17
91
4
62
71
0
2
25
0.98
67981--68023
3
14.0
3
90
4
68
62
0
2
34
1.08
69523--69598
23
3.3
23
81
0
98
14
15
14
55
1.70
72278--72330
6
8.7
6
82
2
52
56
1
1
39
1.21
72278--72330
9
5.8
9
77
2
52
56
1
1
39
1.21
73126--73150
11
2.3
11
100
0
50
72
0
8
20
1.10
77300--77329
14
2.1
14
93
0
51
40
6
30
23
1.80
83958--84032
22
3.4
22
86
0
105
29
20
25
25
1.99
84644--84684
21
2.0
21
95
0
73
31
19
21
26
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
87939--87987
4
12.2
4
100
0
98
0
24
0
75
0.80
93714--93773
30
2.0
30
100
0
120
40
0
10
50
1.36

Tables:   1

The End!