Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001570.1 Hibiscus syriacus cultivar Beakdansim tig00003119_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100912

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8221--8290
32
2.2
32
100
0
140
44
21
10
24
1.82
9326--9360
18
1.9
18
88
11
54
25
34
20
20
1.96
20122--20173
15
3.5
15
89
5
79
36
7
19
36
1.80
20156--20225
20
3.5
20
96
0
131
40
10
14
35
1.79
20393--20457
28
2.3
27
82
15
78
50
1
1
46
1.20
20393--20490
31
3.2
32
76
15
84
51
2
1
45
1.19
20510--20553
22
2.0
23
86
4
63
54
0
0
45
0.99
20514--20570
21
2.6
22
81
10
64
52
0
0
47
1.00
20450--20570
54
2.3
51
77
19
133
50
0
0
47
1.12
20759--20872
41
2.7
42
91
2
194
46
19
16
17
1.84
24307--24372
32
2.0
33
91
2
107
50
10
12
27
1.72
26100--26149
26
1.9
26
87
0
73
42
8
18
32
1.79
29635--29672
19
2.0
19
100
0
76
47
5
0
47
1.24
38202--38257
15
3.8
14
75
17
51
51
0
1
46
1.11
38204--38265
31
2.0
30
85
14
83
51
0
1
46
1.10
38204--38263
29
2.0
30
90
9
97
51
0
1
46
1.10
58969--58998
2
15.0
2
100
0
60
50
0
0
50
1.00
59105--59171
33
2.0
33
91
5
109
52
13
5
28
1.64
59250--59307
28
2.1
28
100
0
116
46
20
10
22
1.81
61807--61840
17
2.0
17
100
0
68
52
5
11
29
1.61
77899--77982
23
3.7
23
87
3
116
25
22
28
23
1.99
78587--78624
20
1.9
20
88
0
58
10
31
34
23
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
83765--83830
27
2.4
27
94
0
114
37
15
18
28
1.91
83884--83921
15
2.5
15
91
0
58
31
23
7
36
1.84
96208--96322
48
2.4
48
75
2
115
25
18
19
37
1.94
99802--99845
2
22.0
2
100
0
88
50
0
0
50
1.00
100312--100376
23
2.8
23
80
0
85
20
21
24
33
1.97

Tables:   1

The End!