Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001571.1 Hibiscus syriacus cultivar Beakdansim tig00003121_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  126080

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16620--16654
17
2.1
16
94
5
61
57
14
0
28
1.38
17616--17664
20
2.3
21
89
6
73
65
6
0
28
1.16
18479--18578
50
2.0
51
80
9
116
19
29
32
20
1.96
22259--22345
35
2.5
34
80
12
97
54
10
8
27
1.62
29882--29943
30
2.0
31
93
6
108
40
16
9
33
1.81
34821--35045
123
1.9
120
84
6
301
38
12
27
21
1.90
35403--35437
12
2.9
12
91
0
61
65
5
25
2
1.28
35634--35676
13
3.3
12
81
12
50
72
0
27
0
0.85
40066--40098
16
2.0
17
88
5
50
18
3
36
42
1.66
72168--72212
19
2.3
20
78
17
51
57
11
4
26
1.52
72616--72655
21
1.9
21
89
0
62
10
25
40
25
1.86
72638--72697
19
2.9
20
85
9
68
16
26
35
21
1.95
76495--76534
21
1.9
21
85
10
55
35
10
2
52
1.48
79621--79665
22
2.0
22
86
4
63
28
31
26
13
1.94
80780--80838
24
2.5
24
76
17
61
32
6
22
38
1.80
80951--81176
103
2.2
103
91
1
364
28
11
23
36
1.90
81185--81252
23
3.0
23
86
0
82
20
25
27
26
1.99
84346--84540
64
3.0
64
92
0
318
35
21
10
31
1.88
84738--84858
43
2.8
43
92
2
199
34
27
15
22
1.94
84737--84888
43
3.6
41
85
5
169
33
29
14
22
1.94
85120--85214
43
2.2
43
88
3
138
29
31
16
22
1.96
85392--85550
66
2.4
66
86
2
212
32
22
17
27
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
85554--86340
84
9.4
84
82
1
842
31
22
18
26
1.97
85555--86375
252
3.3
251
86
1
1043
31
22
18
27
1.97
95905--96053
65
2.3
63
87
7
221
30
0
16
53
1.48
95905--96079
32
5.5
32
81
3
194
29
0
17
53
1.48
95905--96108
32
6.4
32
78
7
114
27
0
19
52
1.52
100022--100064
2
21.5
2
100
0
86
51
0
0
48
1.00
101421--101469
25
2.0
24
84
15
64
53
0
12
34
1.39
103586--103616
7
4.4
7
100
0
62
25
29
32
12
1.93
103626--103677
18
2.9
18
94
0
95
17
15
48
19
1.82
103690--103741
9
5.3
10
84
11
72
36
30
19
13
1.90
105244--105292
14
3.4
15
78
13
50
42
0
8
48
1.32
107295--107363
2
35.0
2
73
13
54
46
1
1
50
1.19
113683--113726
18
2.4
18
92
0
70
18
25
31
25
1.97
113683--113736
18
3.0
17
86
5
63
22
24
29
24
1.99
117113--117137
2
12.5
2
100
0
50
48
0
0
52
1.00
120090--120142
19
2.8
19
91
0
79
30
13
28
28
1.94
120198--120251
24
2.2
24
100
0
108
29
16
27
25
1.97
121024--121123
18
5.6
18
87
0
146
19
26
29
26
1.98

Tables:   1

The End!