Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001572.1 Hibiscus syriacus cultivar Beakdansim tig00003123_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87938

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2945--2986
20
2.1
20
91
8
68
33
2
4
59
1.31
3531--3573
22
2.0
21
81
9
50
34
9
2
53
1.46
11695--11751
16
3.8
16
71
15
50
57
0
1
40
1.09
11695--11753
31
1.9
31
83
13
77
55
0
1
42
1.09
15141--15182
3
14.0
3
100
0
84
66
0
0
33
0.92
25778--25804
13
2.1
13
100
0
54
48
7
22
22
1.75
43190--43224
2
17.5
2
100
0
70
48
0
0
51
1.00
44779--44808
2
15.0
2
92
0
51
50
3
0
46
1.18
45898--45925
2
14.0
2
100
0
56
50
0
0
50
1.00
50440--50471
13
2.4
14
94
5
57
15
46
25
12
1.81
51244--51288
22
2.0
22
86
4
63
31
33
26
8
1.87
52591--52718
31
4.1
31
78
9
134
27
17
20
34
1.95
52704--52768
30
2.2
30
91
0
103
26
21
21
30
1.98
52715--52776
30
2.1
30
100
0
124
24
19
24
32
1.98
56247--56359
10
11.8
9
73
12
82
17
25
26
30
1.98
56247--56361
19
6.0
18
77
10
95
17
26
26
30
1.97
56247--56321
29
2.5
30
89
8
118
17
26
26
29
1.97
56379--56419
5
7.8
5
84
10
55
19
53
21
4
1.63
56366--56426
22
2.8
22
100
0
122
18
49
22
9
1.77
57309--57432
63
2.0
63
84
6
162
16
26
29
27
1.97
65972--66150
77
2.3
78
90
1
270
41
15
16
26
1.88
66993--67046
2
27.0
2
100
0
108
50
50
0
0
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
76403--76484
39
2.1
39
100
0
164
28
2
20
48
1.62
78386--78527
65
2.2
63
82
8
171
33
17
22
26
1.96
78515--78572
20
2.6
22
89
10
84
32
20
22
24
1.98
79343--79414
18
4.0
18
87
0
99
18
18
33
30
1.94
79343--79411
36
1.9
36
93
0
120
15
18
34
30
1.93
82366--82523
65
2.4
65
81
8
153
34
17
21
26
1.95
82512--82569
20
2.6
22
89
10
84
32
20
22
24
1.98
83339--83392
18
3.0
17
84
10
72
22
20
27
29
1.98
83997--84052
16
3.5
16
100
0
112
30
10
19
39
1.86
84470--84806
168
2.0
168
95
0
611
31
16
24
28
1.96

Tables:   1

The End!