genome.fa.s1573.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001573.1 Hibiscus syriacus cultivar Beakdansim tig00003125_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99393

Tables:   1   

This is table  1  of  1  ( 90 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1370--1437	30	2.5	26	75	15	64	72	1	1	25	1.02
1455--1577	33	3.6	34	86	8	153	44	8	1	44	1.45
1586--1755	34	5.0	35	81	13	187	40	5	4	48	1.48
1568--1755	65	2.8	67	81	13	219	40	6	4	48	1.48
1586--1755	33	4.9	34	83	11	179	40	5	4	48	1.48
2434--2805	82	4.5	83	80	10	402	25	20	19	35	1.96
2433--2805	79	4.5	81	80	7	346	25	20	19	35	1.95
3862--3917	25	2.2	25	100	0	112	21	33	10	33	1.88
6253--6410	64	2.5	63	78	8	151	30	19	24	25	1.98
8049--8105	23	2.5	23	91	0	96	17	21	26	35	1.95
11553--11610	20	2.7	20	81	10	62	31	18	22	27	1.97
13472--13783	103	3.1	103	95	2	578	35	23	14	26	1.93
18823--18891	23	3.0	23	84	0	75	27	23	27	21	1.99
18915--19119	103	2.0	103	97	0	383	36	22	13	27	1.91
21934--21985	23	2.3	23	83	3	61	28	9	19	42	1.82
21983--22043	23	2.7	23	92	0	104	18	24	26	31	1.97
25052--25112	28	2.2	28	85	5	79	68	1	1	27	1.08
25072--25126	28	2.0	28	82	7	67	70	0	1	27	0.97
26560--26753	36	5.4	36	83	9	204	44	9	2	43	1.47
26537--26948	72	5.9	70	76	15	297	44	7	3	45	1.47
26637--26661	13	1.9	13	100	0	50	52	8	0	40	1.31
26716--26779	25	2.5	26	92	5	112	43	7	4	43	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26742--26942	38	5.5	36	88	7	282	43	5	4	45	1.50
27016--27067	2	26.0	2	100	0	104	50	0	0	50	1.00
27336--27767	183	2.4	183	85	2	564	45	13	14	27	1.81
27592--27933	163	2.1	164	90	0	533	44	13	14	27	1.83
30254--30300	21	2.2	21	77	7	51	38	2	48	10	1.50
30647--30682	6	6.0	6	86	0	54	30	2	16	50	1.60
30648--30686	18	2.2	18	95	0	69	33	5	12	48	1.63
32533--32580	21	2.2	21	85	3	60	31	8	10	50	1.66
32544--32589	21	2.2	20	81	7	56	26	13	15	45	1.82
32316--32721	202	2.0	201	90	1	643	39	12	12	34	1.81
34536--34575	2	20.0	2	100	0	80	50	0	0	50	1.00
35192--35241	23	2.2	23	85	0	64	32	20	10	38	1.85
39454--39546	21	4.5	21	78	4	100	39	18	24	17	1.91
39454--39546	41	2.3	41	100	0	186	39	18	24	17	1.91
39473--39607	41	3.3	41	84	4	148	37	21	20	20	1.94
39535--39628	20	4.7	20	80	7	91	32	25	17	24	1.96
39816--39859	22	2.0	22	95	0	79	20	45	15	18	1.85
40641--40686	18	2.6	18	89	0	74	26	45	17	10	1.81
41153--41218	19	3.4	19	81	4	78	37	24	22	15	1.92
41280--41367	19	4.6	19	80	4	61	14	23	21	39	1.91
41291--41364	19	3.8	19	82	3	67	16	24	21	37	1.93
43358--43492	19	7.6	19	82	14	173	45	17	22	14	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43358--43492	33	3.8	37	91	4	178	45	17	22	14	1.84
43430--43487	14	3.8	14	77	20	62	50	17	20	12	1.78
43375--43492	33	3.4	33	91	5	182	47	16	21	14	1.82
43511--43568	20	2.9	20	94	0	98	17	22	22	37	1.93
44604--44657	24	2.2	24	90	0	81	24	16	20	38	1.92
44832--44856	12	2.1	12	100	0	50	72	0	28	0	0.86
47148--47215	20	3.8	19	72	21	74	45	19	22	13	1.84
47128--47214	20	4.7	20	73	16	62	43	20	21	13	1.87
47224--47350	33	3.9	32	85	8	184	14	22	18	43	1.87
47216--47347	66	2.0	66	96	0	246	15	22	18	43	1.88
47458--47494	14	2.6	14	91	0	65	45	24	0	29	1.53
50710--50808	33	3.0	33	89	1	144	39	26	23	11	1.88
50685--50869	19	10.1	19	75	14	165	43	21	22	12	1.86
50780--50869	39	2.3	38	94	1	153	46	21	20	12	1.82
50865--50931	19	3.5	19	85	2	89	10	16	25	47	1.78
51449--51542	20	4.7	20	77	7	82	25	17	24	32	1.96
51531--51623	20	4.5	21	78	4	100	17	24	19	38	1.92
51470--51604	41	3.3	41	84	4	148	20	20	21	37	1.95
51531--51623	41	2.3	41	98	0	177	17	24	19	38	1.92
52969--53263	108	2.7	108	87	3	405	38	12	12	35	1.81
52737--53121	213	1.8	213	86	3	560	39	14	14	32	1.85
53417--53459	18	2.4	18	100	0	86	41	16	4	37	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55711--55837	37	3.4	37	80	7	132	45	8	4	40	1.56
55711--55856	74	1.9	76	83	2	188	43	8	4	42	1.57
55852--56124	35	7.7	35	77	9	241	42	6	3	47	1.46
55904--56119	36	6.1	35	80	6	229	43	5	3	48	1.42
55860--56115	72	3.6	70	84	7	329	42	6	3	47	1.47
57798--57826	15	1.9	15	100	0	58	34	10	6	48	1.64
59951--59993	20	2.1	21	86	4	61	18	13	0	67	1.23
60789--60826	20	1.9	20	88	0	58	28	26	21	23	1.99
60831--60987	64	2.5	63	87	9	230	28	22	17	30	1.97
60831--61006	64	2.7	62	84	11	214	27	23	18	30	1.98
61053--61103	21	2.4	21	93	0	84	27	31	17	23	1.97
66981--67193	103	2.1	103	93	0	372	26	13	23	36	1.92
67210--67277	23	3.0	23	86	0	91	20	25	26	27	1.99
67605--67657	16	3.2	16	72	5	52	30	1	26	41	1.66
70063--70144	23	3.6	23	76	14	89	26	24	21	26	2.00
72785--72822	20	1.9	20	88	0	58	23	28	21	26	1.99
72827--72983	64	2.5	63	87	7	228	29	22	17	29	1.97
80251--80290	21	1.9	21	89	0	62	25	40	25	10	1.86
83809--84225	227	1.8	225	86	2	593	39	12	13	33	1.84
84125--84410	108	2.6	108	81	3	299	38	13	12	35	1.83
84782--84832	23	2.2	23	89	0	75	37	15	13	33	1.87
84826--85138	75	4.2	75	83	2	378	34	13	9	43	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84828--85109	149	1.9	149	87	0	420	34	12	9	43	1.76
99302--99335	17	2.0	17	94	0	59	23	26	23	26	2.00

Tables:   1

The End!