genome.fa.s1575.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001575.1 Hibiscus syriacus cultivar Beakdansim tig00003130_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106346

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3475--3580	31	3.4	31	76	8	99	30	18	17	33	1.95
9345--9384	12	3.3	12	85	0	53	25	45	17	12	1.83
10124--10168	21	2.1	21	87	0	63	31	28	24	15	1.96
10965--11089	31	4.0	31	91	2	189	20	20	22	37	1.94
14234--14278	21	2.1	21	87	0	63	31	28	24	15	1.96
15077--15201	62	2.0	62	87	3	180	20	20	21	37	1.94
15077--15186	31	3.5	31	93	0	184	19	20	20	39	1.93
18526--18648	54	2.4	51	81	12	142	42	5	43	8	1.58
24667--24722	20	2.8	19	84	7	76	32	1	0	66	1.03
25699--26063	180	2.0	180	100	0	730	36	11	12	40	1.79
34842--34868	4	6.8	4	100	0	54	77	0	0	22	0.76
36230--36263	17	1.9	18	94	5	61	29	2	2	64	1.22
38088--38140	26	2.0	26	96	0	97	37	18	20	22	1.94
39657--39682	13	2.0	13	100	0	52	30	7	15	46	1.74
42793--42855	30	2.1	30	100	0	126	28	12	19	39	1.88
43526--43566	16	2.6	16	88	3	57	36	7	21	34	1.82
43539--43580	16	2.5	17	80	11	50	33	11	23	30	1.91
43669--43710	15	2.9	15	92	3	68	33	21	19	26	1.97
47011--47053	23	1.9	22	81	13	52	34	20	11	32	1.89
48679--48759	20	4.1	20	87	6	128	39	24	17	18	1.92
49147--49178	13	2.5	13	100	0	64	0	6	15	78	0.95
51231--51276	4	11.5	4	80	0	56	28	2	2	67	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51420--51515	42	2.3	42	78	7	104	22	34	18	23	1.96
51420--51515	21	4.6	21	73	10	79	22	34	18	23	1.96
51412--52258	424	2.0	424	93	0	1462	24	23	23	27	2.00
53365--53400	14	2.6	14	95	0	63	33	0	22	44	1.53
53549--53645	20	5.2	20	69	14	89	18	19	21	40	1.92
53530--53641	54	2.1	54	85	6	147	18	21	21	38	1.94
53804--53889	39	2.2	39	85	10	122	22	15	17	45	1.85
54202--54238	18	2.1	18	89	0	56	51	10	5	32	1.60
54625--54674	25	2.0	25	92	0	82	46	22	6	26	1.74
54735--54776	20	2.1	20	95	0	75	42	16	23	16	1.88
54858--54921	20	3.2	20	88	0	101	17	21	23	37	1.94
55252--55286	6	5.8	6	86	0	52	17	2	20	60	1.49
55245--55285	18	2.3	18	95	0	73	19	2	21	56	1.54
57545--57612	24	2.8	24	86	0	91	38	19	17	25	1.93
61775--61821	3	15.7	3	100	0	94	34	0	0	65	0.93
65998--66135	60	2.3	61	75	12	142	31	20	5	42	1.75
71136--71174	17	2.4	17	95	4	71	51	5	0	43	1.24
71289--71314	9	2.9	9	100	0	52	23	7	23	46	1.78
96223--96274	21	2.5	21	81	3	61	38	19	25	17	1.93
96263--96376	20	5.7	20	82	6	140	33	22	18	25	1.97
96933--96974	19	2.2	19	91	0	66	52	26	16	4	1.63
96970--97135	20	9.1	19	74	16	136	12	21	22	43	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96975--97051	39	2.0	39	87	5	111	9	19	25	45	1.80
97023--97109	33	2.6	33	90	1	129	12	22	25	39	1.90
99144--99262	42	2.8	42	82	5	116	23	35	18	22	1.96
99196--99262	21	3.2	21	74	4	64	25	34	20	19	1.96
100614--100649	14	2.6	14	95	0	63	30	0	25	44	1.54
100812--100938	33	3.9	32	80	8	157	16	21	18	44	1.87
100808--100938	19	7.7	19	64	23	76	16	21	18	44	1.87
100805--100937	66	2.0	66	91	0	212	18	21	18	42	1.89
103414--103467	24	2.2	24	90	0	81	38	20	16	24	1.92
104444--104501	20	2.9	20	97	0	107	39	22	22	15	1.91
104520--104573	19	2.8	19	97	0	99	14	22	18	44	1.86
104690--104726	14	2.6	14	86	0	56	48	21	0	29	1.50

Tables:   1

The End!