Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001576.1 Hibiscus syriacus cultivar Beakdansim tig00003132_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 83600
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Found at i:1239 original size:30 final size:31
Alignment explanation
Indices: 1193--1256 Score: 121
Period size: 30 Copynumber: 2.1 Consensus size: 31
1183 AATACGAATG
1193 TTCATTTATAAAGTTAGAAATATTAATTTAA
1 TTCATTTATAAAGTTAGAAATATTAATTTAA
1224 TTCATTTAT-AAGTTAGAAATATTAATTTAA
1 TTCATTTATAAAGTTAGAAATATTAATTTAA
1254 TTC
1 TTC
1257 TAGAAAATAT
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 24 0.73
31 9 0.27
ACGTcount: A:0.42, C:0.05, G:0.06, T:0.47
Consensus pattern (31 bp):
TTCATTTATAAAGTTAGAAATATTAATTTAA
Found at i:4086 original size:32 final size:30
Alignment explanation
Indices: 3988--4107 Score: 152
Period size: 32 Copynumber: 3.9 Consensus size: 30
3978 GAAGGACCTA
* *
3988 TCCATATGTTCCAAAGAACATATGTAACTG
1 TCCATATGTCCCAAAGAACATAGGTAACTG
* *
4018 TTCATATGT-CCGAAGAACATAGGTAAACTG
1 TCCATATGTCCCAAAGAACATAGGT-AACTG
*
4048 TCCATATGTCCCGAAGAACATAGGTAATCCTG
1 TCCATATGTCCCAAAGAACATAGGTAA--CTG
*
4080 TCCATATGTCCCAAAGGACATAGGTAAC
1 TCCATATGTCCCAAAGAACATAGGTAAC
4108 CCTCGACTCT
Statistics
Matches: 80, Mismatches: 6, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
29 13 0.16
30 24 0.30
31 15 0.19
32 28 0.35
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.26
Consensus pattern (30 bp):
TCCATATGTCCCAAAGAACATAGGTAACTG
Found at i:20133 original size:51 final size:51
Alignment explanation
Indices: 20060--20163 Score: 208
Period size: 51 Copynumber: 2.0 Consensus size: 51
20050 ATCCGGTTAG
20060 TATTAACATATGAAGGTGGACACAACAAGTGAAACAATATAACACTGTGGT
1 TATTAACATATGAAGGTGGACACAACAAGTGAAACAATATAACACTGTGGT
20111 TATTAACATATGAAGGTGGACACAACAAGTGAAACAATATAACACTGTGGT
1 TATTAACATATGAAGGTGGACACAACAAGTGAAACAATATAACACTGTGGT
20162 TA
1 TA
20164 AGTTCACCTT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 53 1.00
ACGTcount: A:0.43, C:0.13, G:0.19, T:0.24
Consensus pattern (51 bp):
TATTAACATATGAAGGTGGACACAACAAGTGAAACAATATAACACTGTGGT
Found at i:24732 original size:2 final size:2
Alignment explanation
Indices: 24725--24751 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
24715 TCTCTTCCTT
24725 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
24752 TTTTTAACTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:25958 original size:2 final size:2
Alignment explanation
Indices: 25951--26026 Score: 145
Period size: 2 Copynumber: 38.5 Consensus size: 2
25941 TCATGGCAAC
25951 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
25993 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
26027 GGACTAAAAG
Statistics
Matches: 73, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
1 1 0.01
2 72 0.99
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:26343 original size:20 final size:19
Alignment explanation
Indices: 26318--26371 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 19
26308 GCGAAATAAA
26318 AATCGCAACGCGATCTCCAG
1 AATCGCAACGCGATC-CCAG
** *
26338 AATCGCAAATCAGTTCCCAG
1 AATCGCAACGC-GATCCCAG
26358 AATCGCAACGCGAT
1 AATCGCAACGCGAT
26372 TATGAAGAAT
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
19 2 0.07
20 22 0.81
21 3 0.11
ACGTcount: A:0.33, C:0.31, G:0.19, T:0.17
Consensus pattern (19 bp):
AATCGCAACGCGATCCCAG
Found at i:26382 original size:21 final size:21
Alignment explanation
Indices: 26356--26453 Score: 69
Period size: 21 Copynumber: 4.7 Consensus size: 21
26346 ATCAGTTCCC
26356 AGAATCGCAACGCGATTATGA
1 AGAATCGCAACGCGATTATGA
*
26377 AGAATCGCAATGCGA-TA-GTA
1 AGAATCGCAACGCGATTATG-A
** * **
26397 CA-AATTCGCATTGCGATTTTCT
1 -AGAA-TCGCAACGCGATTATGA
*
26419 AGAATCGCAACGCGAATAT-A
1 AGAATCGCAACGCGATTATGA
*
26439 AAAATCGCAACGCGA
1 AGAATCGCAACGCGA
26454 ACATATAAAT
Statistics
Matches: 60, Mismatches: 11, Indels: 13
0.71 0.13 0.15
Matches are distributed among these distances:
19 1 0.02
20 19 0.32
21 37 0.62
22 3 0.05
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.21
Consensus pattern (21 bp):
AGAATCGCAACGCGATTATGA
Found at i:26446 original size:20 final size:20
Alignment explanation
Indices: 26421--26470 Score: 82
Period size: 20 Copynumber: 2.5 Consensus size: 20
26411 GATTTTCTAG
*
26421 AATCGCAACGCGAATATAAA
1 AATCGCAACGCGAACATAAA
*
26441 AATCGCAACGCGAACATATA
1 AATCGCAACGCGAACATAAA
26461 AATCGCAACG
1 AATCGCAACG
26471 TGATTCTGAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.46, C:0.24, G:0.16, T:0.14
Consensus pattern (20 bp):
AATCGCAACGCGAACATAAA
Found at i:26505 original size:20 final size:20
Alignment explanation
Indices: 26482--26691 Score: 228
Period size: 20 Copynumber: 10.4 Consensus size: 20
26472 GATTCTGACT
* *
26482 ATCGCAACGCGTATCCGTAA
1 ATCGCAACGCGAATACGTAA
26502 ATCGCAACGAC-AATACGTAAA
1 ATCGCAACG-CGAATACGT-AA
* *
26523 ATCGCAACGCGTATCCGTAA
1 ATCGCAACGCGAATACGTAA
*
26543 ATCGCAACGAGAATACGTAA
1 ATCGCAACGCGAATACGTAA
*
26563 ATCGCAACGCGTAT-CTGTAA
1 ATCGCAACGCGAATAC-GTAA
*
26583 ATCGCAACGAGAATACGTAA
1 ATCGCAACGCGAATACGTAA
* * * *
26603 ATCGTAATGCGTATCCGTAA
1 ATCGCAACGCGAATACGTAA
**
26623 ATCGCAATACGAATACGTAA
1 ATCGCAACGCGAATACGTAA
*
26643 ATCGCAATGCGAATACGTAA
1 ATCGCAACGCGAATACGTAA
*
26663 ATCGCAATGCGAAT-CTGTAA
1 ATCGCAACGCGAATAC-GTAA
26683 ATCGCAACG
1 ATCGCAACG
26692 AGATTCTGAC
Statistics
Matches: 162, Mismatches: 22, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
19 2 0.01
20 142 0.88
21 18 0.11
ACGTcount: A:0.38, C:0.23, G:0.19, T:0.20
Consensus pattern (20 bp):
ATCGCAACGCGAATACGTAA
Found at i:26527 original size:81 final size:81
Alignment explanation
Indices: 26439--26669 Score: 247
Period size: 81 Copynumber: 2.9 Consensus size: 81
26429 CGCGAATATA
* * * *
26439 AAAATCGCAACGCG-AACATATAAATCGCAACGTG-ATTC-TGACTATCGCAACGCGTATCCGTA
1 AAAATCGCAACGCGTAAC-CATAAATCGCAACGAGAATACGT-A-AATCGCAACGCGTATCCGTA
26501 AATCGCAACGACAATACGT
63 AATCGCAACGACAATACGT
* * *
26520 AAAATCGCAACGCGTATCCGTAAATCGCAACGAGAATACGTAAATCGCAACGCGTATCTGTAAAT
1 AAAATCGCAACGCGTAACCATAAATCGCAACGAGAATACGTAAATCGCAACGCGTATCCGTAAAT
*
26585 CGCAACGAGAATACGT
66 CGCAACGACAATACGT
* * * * * * * *
26601 -AAATCGTAATGCGTATCCGTAAATCGCAA-TACGAATACGTAAATCGCAATGCGAATACGTAAA
1 AAAATCGCAACGCGTAACCATAAATCGCAACGA-GAATACGTAAATCGCAACGCGTATCCGTAAA
26664 TCGCAA
65 TCGCAA
26670 TGCGAATCTG
Statistics
Matches: 131, Mismatches: 15, Indels: 9
0.85 0.10 0.06
Matches are distributed among these distances:
79 1 0.01
80 60 0.46
81 63 0.48
82 6 0.05
83 1 0.01
ACGTcount: A:0.39, C:0.23, G:0.18, T:0.20
Consensus pattern (81 bp):
AAAATCGCAACGCGTAACCATAAATCGCAACGAGAATACGTAAATCGCAACGCGTATCCGTAAAT
CGCAACGACAATACGT
Found at i:26592 original size:40 final size:40
Alignment explanation
Indices: 26482--26691 Score: 289
Period size: 40 Copynumber: 5.2 Consensus size: 40
26472 GATTCTGACT
*
26482 ATCGCAACGCGTATCCGTAAATCGCAACGACAATACGTAAA
1 ATCGCAACGCGTATCCGTAAATCGCAACGAGAATACGT-AA
26523 ATCGCAACGCGTATCCGTAAATCGCAACGAGAATACGTAA
1 ATCGCAACGCGTATCCGTAAATCGCAACGAGAATACGTAA
*
26563 ATCGCAACGCGTATCTGTAAATCGCAACGAGAATACGTAA
1 ATCGCAACGCGTATCCGTAAATCGCAACGAGAATACGTAA
* * *
26603 ATCGTAATGCGTATCCGTAAATCGCAA-TACGAATACGTAA
1 ATCGCAACGCGTATCCGTAAATCGCAACGA-GAATACGTAA
* * * * *
26643 ATCGCAATGCGAATACGTAAATCGCAATGCGAAT-CTGTAA
1 ATCGCAACGCGTATCCGTAAATCGCAACGAGAATAC-GTAA
26683 ATCGCAACG
1 ATCGCAACG
26692 AGATTCTGAC
Statistics
Matches: 154, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
39 2 0.01
40 115 0.75
41 37 0.24
ACGTcount: A:0.38, C:0.23, G:0.19, T:0.20
Consensus pattern (40 bp):
ATCGCAACGCGTATCCGTAAATCGCAACGAGAATACGTAA
Found at i:26699 original size:20 final size:19
Alignment explanation
Indices: 26459--26697 Score: 126
Period size: 20 Copynumber: 11.9 Consensus size: 19
26449 CGCGAACATA
*
26459 TAAATCGCAACGTGATTC-
1 TAAATCGCAACGAGATTCG
* * *
26477 TGACTATCGCAACGCGTATCCG
1 T-A-AATCGCAACGAG-ATTCG
* *
26499 TAAATCGCAACGACAATACG
1 TAAATCGCAACGA-GATTCG
* *
26519 TAAAATCGCAACGCGTATCCG
1 T-AAATCGCAACGAG-ATTCG
*
26540 TAAATCGCAACGAGAATACG
1 TAAATCGCAACGAG-ATTCG
*
26560 TAAATCGCAACGCG-TATCTG
1 TAAATCGCAACGAGAT-TC-G
*
26580 TAAATCGCAACGAGAATACG
1 TAAATCGCAACGAG-ATTCG
* * * *
26600 TAAATCGTAATGCGTATCCG
1 TAAATCGCAACGAG-ATTCG
*
26620 TAAATCGCAATACGA-ATACG
1 TAAATCGC-A-ACGAGATTCG
*
26640 TAAATCGCAATGCGA-ATACG
1 TAAATCGCAA--CGAGATTCG
* * *
26660 TAAATCGCAATGCGAATCTG
1 TAAATCGCAACGAGATTC-G
26680 TAAATCGCAACGAGATTC
1 TAAATCGCAACGAGATTC
26698 TGACTATCGC
Statistics
Matches: 171, Mismatches: 33, Indels: 32
0.72 0.14 0.14
Matches are distributed among these distances:
18 4 0.02
19 5 0.03
20 136 0.80
21 22 0.13
22 4 0.02
ACGTcount: A:0.37, C:0.23, G:0.19, T:0.21
Consensus pattern (19 bp):
TAAATCGCAACGAGATTCG
Found at i:27601 original size:24 final size:24
Alignment explanation
Indices: 27550--27603 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
27540 GTATTCGAAA
*
27550 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATCTTGGTCAATACCCAGAC
* *
27574 TTTGATCTTGGTCAATACTCAGAT
1 TTTGATCTTGGTCAATACCCAGAC
27598 TTTGAT
1 TTTGAT
27604 AATTTTTCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.22, C:0.19, G:0.19, T:0.41
Consensus pattern (24 bp):
TTTGATCTTGGTCAATACCCAGAC
Found at i:30041 original size:20 final size:20
Alignment explanation
Indices: 30016--30070 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 20
30006 AGACATTCAT
* *
30016 TTGACTATCGCAATGCGGAA
1 TTGACTATCGCAACGCGAAA
30036 TTGACTATCGCAACGCGAAA
1 TTGACTATCGCAACGCGAAA
*
30056 ATGACTATCGCAACG
1 TTGACTATCGCAACG
30071 AGAGAATCGC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.33, C:0.24, G:0.22, T:0.22
Consensus pattern (20 bp):
TTGACTATCGCAACGCGAAA
Found at i:30102 original size:33 final size:33
Alignment explanation
Indices: 30042--30160 Score: 121
Period size: 33 Copynumber: 3.5 Consensus size: 33
30032 GGAATTGACT
* ** *
30042 ATCGCAACGCGAAAATGACTATCGCAACGAGAGA
1 ATCGCAATGCG-AAATGAAAATTGCAACGAGAGA
*
30076 ATCGCAATGCTAAATGAAAATTGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATTGCAACGAGAGA
** * *
30109 ATCGCAATGCGAAATGAAAAGCGCAACGTGAAA
1 ATCGCAATGCGAAATGAAAATTGCAACGAGAGA
* *
30142 ATTGCAACGCGAATATGAA
1 ATCGCAATGCGAA-ATGAA
30161 TATCACAACG
Statistics
Matches: 72, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
33 58 0.81
34 14 0.19
ACGTcount: A:0.44, C:0.18, G:0.23, T:0.15
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATTGCAACGAGAGA
Found at i:30339 original size:14 final size:14
Alignment explanation
Indices: 30320--30356 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
30310 CATCAATTAA
30320 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
30334 ACAAATCATCTTTT
1 ACAAATCAACTTTT
30348 ACAAATCAA
1 ACAAATCAA
30357 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:31426 original size:19 final size:19
Alignment explanation
Indices: 31402--31454 Score: 88
Period size: 19 Copynumber: 2.8 Consensus size: 19
31392 TCCATCGAAA
**
31402 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTCATTTCGCGT
31421 TGCGATTTTCATTTCGCGT
1 TGCGATTTTCATTTCGCGT
31440 TGCGATTTTCATTTC
1 TGCGATTTTCATTTC
31455 TCTCGTTGCA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.09, C:0.19, G:0.23, T:0.49
Consensus pattern (19 bp):
TGCGATTTTCATTTCGCGT
Found at i:31506 original size:20 final size:20
Alignment explanation
Indices: 31469--31509 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
31459 GTTGCAATAG
* *
31469 TCATTTTCGTATTGCGATTT
1 TCATTTTCATATTACGATTT
*
31489 TCATTTTCATGTTACGATTT
1 TCATTTTCATATTACGATTT
31509 T
1 T
31510 AAGTTTAGAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.17, C:0.15, G:0.12, T:0.56
Consensus pattern (20 bp):
TCATTTTCATATTACGATTT
Found at i:32049 original size:20 final size:20
Alignment explanation
Indices: 32024--32225 Score: 210
Period size: 20 Copynumber: 9.9 Consensus size: 20
32014 CTTTAAAAAT
*
32024 CGCGTTACGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
32044 CGCGTTGTGATTTTACGTAT-
1 CGCGTTGCGA-TTTACGGATA
*
32064 TGTCGTTGCGATTTACGGATA
1 CG-CGTTGCGATTTACGGATA
* * *
32085 CGCATTGCGATTTACGTATT
1 CGCGTTGCGATTTACGGATA
* *
32105 CTCGTTGCGATTTACAGATA
1 CGCGTTGCGATTTACGGATA
* *
32125 CGCGTTGCGATTTACGTATT
1 CGCGTTGCGATTTACGGATA
* *
32145 CTCGTTGTGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
32165 CGCGTTGCGATTTTACGTAT-
1 CGCGTTGCGA-TTTACGGATA
*
32185 TGTCGTTGCGATTTACGGATA
1 CG-CGTTGCGATTTACGGATA
32206 CGCGTTGCGATTTTACGGAT
1 CGCGTTGCGA-TTTACGGAT
32226 TCTCGTTGTG
Statistics
Matches: 146, Mismatches: 29, Indels: 13
0.78 0.15 0.07
Matches are distributed among these distances:
20 104 0.71
21 42 0.29
ACGTcount: A:0.19, C:0.18, G:0.25, T:0.38
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:32110 original size:40 final size:41
Alignment explanation
Indices: 32026--32233 Score: 330
Period size: 41 Copynumber: 5.1 Consensus size: 41
32016 TTAAAAATCG
* * *
32026 CGTTACGATTTACGGATACGCGTTGTGATTTTACGTATTGT
1 CGTTGCGATTTACGGATACGCGTTGCGATTTTACGTATTCT
*
32067 CGTTGCGATTTACGGATACGCATTGCGA-TTTACGTATTCT
1 CGTTGCGATTTACGGATACGCGTTGCGATTTTACGTATTCT
*
32107 CGTTGCGATTTACAGATACGCGTTGCGA-TTTACGTATTCT
1 CGTTGCGATTTACGGATACGCGTTGCGATTTTACGTATTCT
* *
32147 CGTTGTGATTTACGGATACGCGTTGCGATTTTACGTATTGT
1 CGTTGCGATTTACGGATACGCGTTGCGATTTTACGTATTCT
*
32188 CGTTGCGATTTACGGATACGCGTTGCGATTTTACGGATTCT
1 CGTTGCGATTTACGGATACGCGTTGCGATTTTACGTATTCT
32229 CGTTG
1 CGTTG
32234 TGATAGTCAG
Statistics
Matches: 154, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
40 75 0.49
41 79 0.51
ACGTcount: A:0.18, C:0.18, G:0.25, T:0.39
Consensus pattern (41 bp):
CGTTGCGATTTACGGATACGCGTTGCGATTTTACGTATTCT
Found at i:32251 original size:41 final size:41
Alignment explanation
Indices: 32026--32259 Score: 287
Period size: 41 Copynumber: 5.8 Consensus size: 41
32016 TTAAAAATCG
* * * *
32026 CGTTACGATTTACGGATACGCGTTGTGATTTTACGTATTGT
1 CGTTGCGATTCACGGATACGCGTTGCGATTTTACGTATTCT
* *
32067 CGTTGCGATTTACGGATACGCATTGCGA-TTTACGTATTCT
1 CGTTGCGATTCACGGATACGCGTTGCGATTTTACGTATTCT
* *
32107 CGTTGCGATTTACAGATACGCGTTGCGA-TTTACGTATTCT
1 CGTTGCGATTCACGGATACGCGTTGCGATTTTACGTATTCT
* * *
32147 CGTTGTGATTTACGGATACGCGTTGCGATTTTACGTATTGT
1 CGTTGCGATTCACGGATACGCGTTGCGATTTTACGTATTCT
* *
32188 CGTTGCGATTTACGGATACGCGTTGCGATTTTACGGATTCT
1 CGTTGCGATTCACGGATACGCGTTGCGATTTTACGTATTCT
* *
32229 CGTTGTGATAGTCA-GAAT-CGCGTTGCGATTT
1 CGTTGCGAT--TCACGGATACGCGTTGCGATTT
32260 ATATGTTCGC
Statistics
Matches: 175, Mismatches: 15, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
40 75 0.43
41 95 0.54
42 3 0.02
43 2 0.01
ACGTcount: A:0.19, C:0.18, G:0.25, T:0.38
Consensus pattern (41 bp):
CGTTGCGATTCACGGATACGCGTTGCGATTTTACGTATTCT
Found at i:32269 original size:20 final size:20
Alignment explanation
Indices: 32246--32298 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 20
32236 ATAGTCAGAA
*
32246 TCGCGTTGCGATTTAT-ATGT
1 TCGCGTTGCGATTT-TCATAT
32266 TCGCGTTGCGATTTTCATAT
1 TCGCGTTGCGATTTTCATAT
*
32286 TCGTGTTGCGATT
1 TCGCGTTGCGATT
32299 CTGGAAAATC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 1 0.03
20 29 0.97
ACGTcount: A:0.13, C:0.17, G:0.25, T:0.45
Consensus pattern (20 bp):
TCGCGTTGCGATTTTCATAT
Found at i:32397 original size:20 final size:19
Alignment explanation
Indices: 32348--32397 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 19
32338 GTTCTTCATA
32348 ATCGCGTTGCGATTCTGGG
1 ATCGCGTTGCGATTCTGGG
* **
32367 AACTGATTTGCGATTCTGGAG
1 ATC-GCGTTGCGATTCTGG-G
32388 ATCGCGTTGC
1 ATCGCGTTGC
32398 AATTTTTATT
Statistics
Matches: 23, Mismatches: 6, Indels: 3
0.72 0.19 0.09
Matches are distributed among these distances:
19 2 0.09
20 18 0.78
21 3 0.13
ACGTcount: A:0.16, C:0.20, G:0.32, T:0.32
Consensus pattern (19 bp):
ATCGCGTTGCGATTCTGGG
Found at i:38504 original size:32 final size:30
Alignment explanation
Indices: 38437--38531 Score: 104
Period size: 32 Copynumber: 3.1 Consensus size: 30
38427 GAACTTTTAA
* *
38437 AAATTA-TAAAA-TAATTATTAAATTTATC
1 AAATTATTAAAATTAATAATTAATTTTATC
*
38465 AAATTATTACAAATTAATAATTAATTTTGATT
1 AAATTATTA-AAATTAATAATTAATTTT-ATC
*
38497 AAATTATTATAATATAATAATTAAATTTTATC
1 AAATTATTAAAAT-TAATAATT-AATTTTATC
38529 AAA
1 AAA
38532 AGGTTATAAA
Statistics
Matches: 56, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
28 6 0.11
29 2 0.04
30 3 0.05
31 15 0.27
32 24 0.43
33 6 0.11
ACGTcount: A:0.52, C:0.03, G:0.01, T:0.44
Consensus pattern (30 bp):
AAATTATTAAAATTAATAATTAATTTTATC
Found at i:38539 original size:32 final size:31
Alignment explanation
Indices: 38503--38562 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
38493 GATTAAATTA
*
38503 TTATAATATAATAATTAAATTTTATCAAAAGG
1 TTATAAAAT-ATAATTAAATTTTATCAAAAGG
**
38535 TTATAAAATATTGTTAAATTTTATCAAA
1 TTATAAAATATAATTAAATTTTATCAAA
38563 CTATTACAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
31 17 0.68
32 8 0.32
ACGTcount: A:0.48, C:0.03, G:0.05, T:0.43
Consensus pattern (31 bp):
TTATAAAATATAATTAAATTTTATCAAAAGG
Found at i:38574 original size:31 final size:31
Alignment explanation
Indices: 38517--38575 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
38507 AATATAATAA
* *
38517 TTAAATTTTATCAAAAGGTTATAAAATATTG
1 TTAAATTTTATCAAAAGATTACAAAATATTG
**
38548 TTAAATTTTATCAAACTATTACAAAATA
1 TTAAATTTTATCAAAAGATTACAAAATA
38576 GTCACTAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.47, C:0.07, G:0.05, T:0.41
Consensus pattern (31 bp):
TTAAATTTTATCAAAAGATTACAAAATATTG
Found at i:47207 original size:81 final size:78
Alignment explanation
Indices: 47112--47261 Score: 264
Period size: 81 Copynumber: 1.9 Consensus size: 78
47102 CATTGATTTT
47112 TGGCACCTCTACTTTCATATCTATTTGATTTGTTAAAATTTGATTATTGATTGGGAAATGGTAGA
1 TGGCACCTCTACTTTCATATCTATTTGATTTGTTAAAATTTG---ATTGATTGGGAAATGGTAGA
47177 TTTGAATTTTCTCGAA
63 TTTGAATTTTCTCGAA
*
47193 TGGCACCTTTACTTTCATATCTATTTGATTTGTTAAAATTTGATTGATTGGGAAATGGTAGATTT
1 TGGCACCTCTACTTTCATATCTATTTGATTTGTTAAAATTTGATTGATTGGGAAATGGTAGATTT
47258 GAAT
66 GAAT
47262 GTCAGCCCCA
Statistics
Matches: 68, Mismatches: 1, Indels: 3
0.94 0.01 0.04
Matches are distributed among these distances:
78 27 0.40
81 41 0.60
ACGTcount: A:0.27, C:0.10, G:0.18, T:0.45
Consensus pattern (78 bp):
TGGCACCTCTACTTTCATATCTATTTGATTTGTTAAAATTTGATTGATTGGGAAATGGTAGATTT
GAATTTTCTCGAA
Found at i:47887 original size:2 final size:2
Alignment explanation
Indices: 47880--47905 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
47870 GAACTTATGG
47880 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
47906 GGTTAGGATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:48021 original size:18 final size:19
Alignment explanation
Indices: 47998--48033 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
47988 AGATGAACTC
47998 TTTG-TTTTTCTTTCTTTG
1 TTTGTTTTTTCTTTCTTTG
48016 TTTGTTTTTTCTTTCTTT
1 TTTGTTTTTTCTTTCTTT
48034 TTTCCAGTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.00, C:0.11, G:0.08, T:0.81
Consensus pattern (19 bp):
TTTGTTTTTTCTTTCTTTG
Found at i:51641 original size:31 final size:30
Alignment explanation
Indices: 51580--51693 Score: 86
Period size: 31 Copynumber: 3.7 Consensus size: 30
51570 CATAAGTTAT
* * *
51580 AAAATGATTACTAAATTT-TAAGAACAATTAC
1 AAAATAATCACTAAATTTATAA-AA-TATTAC
*
51611 AAAATGATCACTAAATTTATAAAATTATTAC
1 AAAATAATCACTAAATTTATAAAA-TATTAC
* *** *
51642 TAAATAATTGTTAAATTTTATCGAAATATTAC
1 AAAATAATCACTAAA-TTTAT-AAAATATTAC
*
51674 AAAATAATCATTAAATTTAT
1 AAAATAATCACTAAATTTAT
51694 TGAACTTTTA
Statistics
Matches: 68, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
31 39 0.57
32 26 0.38
33 3 0.04
ACGTcount: A:0.50, C:0.08, G:0.04, T:0.38
Consensus pattern (30 bp):
AAAATAATCACTAAATTTATAAAATATTAC
Found at i:52461 original size:33 final size:33
Alignment explanation
Indices: 52391--52461 Score: 81
Period size: 33 Copynumber: 2.2 Consensus size: 33
52381 TGGGGATTTC
* *
52391 AAAGGGTTCAAAATACATCCAAATGGTGATCTT
1 AAAGGATTCAAAATACATCCAAATGGTGATCTA
* * *
52424 AAAGGATTTAAAATGCATGCAAATGG-GAATCTA
1 AAAGGATTCAAAATACATCCAAATGGTG-ATCTA
52457 AAAGG
1 AAAGG
52462 GCAAAGTAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
32 1 0.03
33 31 0.97
ACGTcount: A:0.44, C:0.11, G:0.21, T:0.24
Consensus pattern (33 bp):
AAAGGATTCAAAATACATCCAAATGGTGATCTA
Found at i:59141 original size:2 final size:2
Alignment explanation
Indices: 59134--59201 Score: 136
Period size: 2 Copynumber: 34.0 Consensus size: 2
59124 TTTTTGAAAA
59134 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
59176 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
59202 TTTATAGTTT
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 66 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:59230 original size:36 final size:36
Alignment explanation
Indices: 59192--59516 Score: 281
Period size: 38 Copynumber: 8.7 Consensus size: 36
59182 ATATATATAT
* *
59192 ATATATATATTTTATAGTTTTGAAAATAATTTAAATA
1 ATATATATATTATATAGTTTTGAAAATATTTTAAA-A
59229 TATATATATATAATATATAGTTTTGAAAATATTTTGAAAA
1 -ATATATATAT--TATATAGTTTTGAAAATATTTT-AAAA
* *
59269 CATATATA-ATGTATA-ATTTTTGAAAAACATTTTAATATATA
1 -ATATATATAT-TATATAGTTTTG-AAAATATTTT-A-A-A-A
*
59310 TATATATATATAGTATATAGTTTTTAAAAGTATTTTGAAAA
1 -ATATATATAT--TATATAGTTTTGAAAA-TATTTT-AAAA
*
59351 CATATATATA-TATATAGTTTTGAAAACATTTTAAAA
1 -ATATATATATTATATAGTTTTGAAAATATTTTAAAA
* *
59387 ATATATATATAATATATAGTTTTTAAAATATTTTGAAA
1 ATATATATAT--TATATAGTTTTGAAAATATTTTAAAA
* **
59425 ATATATATAATATATAGTTTTGAAAATATTTT-TGA
1 ATATATATATTATATAGTTTTGAAAATATTTTAAAA
* **
59460 A-A-ATATATTATATAGTTTTTAAAA-AAATT-AAA
1 ATATATATATTATATAGTTTTGAAAATATTTTAAAA
59492 ATATATATATTATAT-GTTTTGAAAA
1 ATATATATATTATATAGTTTTGAAAA
59517 ACAAATTTTA
Statistics
Matches: 242, Mismatches: 29, Indels: 37
0.79 0.09 0.12
Matches are distributed among these distances:
32 5 0.02
33 30 0.12
34 12 0.05
35 11 0.05
36 25 0.10
37 11 0.05
38 71 0.29
39 3 0.01
40 29 0.12
41 21 0.09
42 3 0.01
43 10 0.04
44 11 0.05
ACGTcount: A:0.47, C:0.01, G:0.06, T:0.46
Consensus pattern (36 bp):
ATATATATATTATATAGTTTTGAAAATATTTTAAAA
Found at i:59304 original size:26 final size:26
Alignment explanation
Indices: 59260--59309 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
59250 TTTGAAAATA
*
59260 TTTTGAAAACATATATAATGTATAAT
1 TTTTGAAAACATATATAATATATAAT
*
59286 TTTTGAAAAACAT-TTTAATATATA
1 TTTTG-AAAACATATATAATATATA
59310 TATATATATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 14 0.67
27 7 0.33
ACGTcount: A:0.46, C:0.04, G:0.06, T:0.44
Consensus pattern (26 bp):
TTTTGAAAACATATATAATATATAAT
Found at i:59374 original size:119 final size:122
Alignment explanation
Indices: 59182--59442 Score: 329
Period size: 121 Copynumber: 2.2 Consensus size: 122
59172 ATATATATAT
* * *
59182 ATATATATATATATATATATTTTATAGTTTTGAAAATAATTTAAATATATATATATATAATATAT
1 ATATATATATATATATATAGTATATAGTTTTGAAAATAATTTAAATATACATATATATAATATAT
* * *
59247 AGTTTTGAAAATATTTT-GAAA-ACATATATAATGTATAATTTTTGAAAAACATTTT-A
66 AGTTTTGAAAACATTTTAAAAATACATATATAATATATAATTTTT--AAAACATTTTGA
* * *
59303 ATATATATATATATATATAGTATATAGTTTTTAAAAGTATTTTGAA-A-ACATATATAT-ATATA
1 ATATATATATATATATATAGTATATAGTTTTGAAAA-TAATTTAAATATACATATATATAATATA
* * *
59365 TAGTTTTGAAAACATTTTAAAAATATATATATAATATATAGTTTTTAAAATATTTTGA
65 TAGTTTTGAAAACATTTTAAAAATACATATATAATATATAATTTTTAAAACATTTTGA
*
59423 AAATATATATA-ATATATAGT
1 ATATATATATATATATATAGT
59443 TTTGAAAATA
Statistics
Matches: 123, Mismatches: 13, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
119 40 0.33
120 23 0.19
121 53 0.43
122 7 0.06
ACGTcount: A:0.47, C:0.02, G:0.06, T:0.46
Consensus pattern (122 bp):
ATATATATATATATATATAGTATATAGTTTTGAAAATAATTTAAATATACATATATATAATATAT
AGTTTTGAAAACATTTTAAAAATACATATATAATATATAATTTTTAAAACATTTTGA
Found at i:59535 original size:69 final size:68
Alignment explanation
Indices: 59317--59554 Score: 196
Period size: 69 Copynumber: 3.3 Consensus size: 68
59307 ATATATATAT
* ** * *
59317 ATATAGTATATAGTTTTTAAAAGTATTTTGAAAACATATATATATATATAGTTTTG-AAAACATT
1 ATATATTATATAGTTTTTAAAA--AAATTGAAAATATATATA-ATATATAGTTTTGAAAAAAATT
*
59381 TTAAAAATA
63 TT--GAA-A
** * *
59390 TATATATAATATATAGTTTTTAAAATATTTTGAAAATATATATAATATATAGTTTTGAAAATATT
1 -ATATAT--TATATAGTTTTTAAAA-AAATTGAAAATATATATAATATATAGTTTTGAAAAAAAT
59455 TTTGAAA
62 TTTGAAA
*
59462 ATATATTATATAGTTTTTAAAAAAATT-AAAATATATATATTATAT-GTTTTGAAAAACAAATTT
1 ATATATTATATAGTTTTTAAAAAAATTGAAAATATATATAATATATAGTTTTG-AAAA-AAATTT
59525 T-AAA
64 TGAAA
* *
59529 GCATATATAATATATGGTTTTAAAAA
1 --ATATATTATATA-GTTTTTAAAAA
59555 TGAATTTTTC
Statistics
Matches: 143, Mismatches: 13, Indels: 20
0.81 0.07 0.11
Matches are distributed among these distances:
66 6 0.04
67 24 0.17
68 8 0.06
69 27 0.19
70 10 0.07
71 6 0.04
72 1 0.01
73 2 0.01
74 18 0.13
75 25 0.17
76 16 0.11
ACGTcount: A:0.47, C:0.02, G:0.07, T:0.44
Consensus pattern (68 bp):
ATATATTATATAGTTTTTAAAAAAATTGAAAATATATATAATATATAGTTTTGAAAAAAATTTTG
AAA
Found at i:59561 original size:37 final size:37
Alignment explanation
Indices: 59192--59562 Score: 241
Period size: 37 Copynumber: 9.9 Consensus size: 37
59182 ATATATATAT
* * * **
59192 ATATATATATTTTATAGTTTTGAAAATAATTTAAATATA
1 ATATATATAATATATAGTTTTAAAAATAATTTTGA-A-A
*
59231 TATATATATAATATATAGTTTTGAAAAT-ATTTTGAAA
1 -ATATATATAATATATAGTTTTAAAAATAATTTTGAAA
* * * * *
59268 ACATATATAATGTATAATTTTTGAAAAA-CATTTTAATATATA
1 ATATATATAATATAT-AGTTTT-AAAAATAATTTT--GA-A-A
*
59310 TATATATATATAGTATATAGTTTTTAAAAGT-ATTTTGAAA
1 -ATATATATA-A-TATATAG-TTTTAAAAATAATTTTGAAA
* * * *
59350 ACATATATATATATATAGTTTTGAAAA-CATTTTAAAAA
1 ATATATATA-ATATATAGTTTTAAAAATAATTTT-GAAA
*
59388 TATATATATAATATATAGTTTTTAAAAT-ATTTTGAAA
1 -ATATATATAATATATAGTTTTAAAAATAATTTTGAAA
* *
59425 ATATATATAATATATAGTTTTGAAAATATTTTTG-AA
1 ATATATATAATATATAGTTTTAAAAATAATTTTGAAA
59461 A-ATATAT--TATATAGTTTTTAAAAA-AA--TT-AAA
1 ATATATATAATATATAG-TTTTAAAAATAATTTTGAAA
* *
59492 ATATATATATTATAT-GTTTTGAAAAACAAATTTT-AAA
1 ATATATATAATATATAGTTTT-AAAAA-TAATTTTGAAA
** *
59529 GCATATATAATATATGGTTTTAAAAATGAATTTT
1 ATATATATAATATATAGTTTTAAAAAT-AATTTT
59563 TCTATTATTT
Statistics
Matches: 273, Mismatches: 29, Indels: 61
0.75 0.08 0.17
Matches are distributed among these distances:
31 5 0.02
32 10 0.04
33 14 0.05
34 13 0.05
35 8 0.03
36 42 0.15
37 54 0.20
38 46 0.17
39 23 0.08
40 27 0.10
41 2 0.01
42 2 0.01
43 8 0.03
44 11 0.04
45 8 0.03
ACGTcount: A:0.47, C:0.02, G:0.07, T:0.45
Consensus pattern (37 bp):
ATATATATAATATATAGTTTTAAAAATAATTTTGAAA
Found at i:61806 original size:16 final size:16
Alignment explanation
Indices: 61785--61817 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
61775 CCTTTTCCAC
61785 ATGTATTCATGTTATG
1 ATGTATTCATGTTATG
61801 ATGTATTCATGTTATG
1 ATGTATTCATGTTATG
61817 A
1 A
61818 CATTCATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.27, C:0.06, G:0.18, T:0.48
Consensus pattern (16 bp):
ATGTATTCATGTTATG
Found at i:70276 original size:24 final size:25
Alignment explanation
Indices: 70249--70305 Score: 75
Period size: 24 Copynumber: 2.4 Consensus size: 25
70239 GATTTATGGG
*
70249 AAAATAATTAAT-TAGATATAATTCA
1 AAAATAATTAATATA-ATATAATTAA
70274 AAAATAA-TAATATAATATAATT-A
1 AAAATAATTAATATAATATAATTAA
70297 AAAATAATT
1 AAAATAATT
70306 TTTATATATA
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
23 8 0.27
24 13 0.43
25 9 0.30
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (25 bp):
AAAATAATTAATATAATATAATTAA
Found at i:70314 original size:23 final size:24
Alignment explanation
Indices: 70249--70315 Score: 75
Period size: 23 Copynumber: 2.8 Consensus size: 24
70239 GATTTATGGG
*
70249 AAAATAATTAATTAGATATAATTCA
1 AAAATAATT-ATTATATATAATTCA
*
70274 AAAATAA-TAATATAATATAATT-A
1 AAAATAATTATTAT-ATATAATTCA
*
70297 AAAATAATTTTTATATATA
1 AAAATAATTATTATATATA
70316 TGTATCTCTT
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
23 16 0.44
24 13 0.36
25 7 0.19
ACGTcount: A:0.58, C:0.01, G:0.01, T:0.39
Consensus pattern (24 bp):
AAAATAATTATTATATATAATTCA
Found at i:70887 original size:24 final size:25
Alignment explanation
Indices: 70834--70889 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 25
70824 GACTCTTTTT
* *
70834 TTTATATTTATAATATCTTATATTAT
1 TTTATATTTATAATATC-TATACTAA
70860 TTTATATATTAT-ATATC-ATACTAA
1 TTTATAT-TTATAATATCTATACTAA
70884 TTTATA
1 TTTATA
70890 ATATATTAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
24 11 0.41
26 12 0.44
27 4 0.15
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (25 bp):
TTTATATTTATAATATCTATACTAA
Found at i:72845 original size:36 final size:36
Alignment explanation
Indices: 72805--72876 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
72795 ATCAAGTCCG
*
72805 ATTGAATTTTTCTAAACTTAAATTAAAATGTATGAT
1 ATTGAATTTTTCTAAACTTAAATTAAAATATATGAT
*
72841 ATTGAATTTTTCTGAACTTAAATTAAAATATATGAT
1 ATTGAATTTTTCTAAACTTAAATTAAAATATATGAT
72877 GGGTGAATAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.42, C:0.06, G:0.08, T:0.44
Consensus pattern (36 bp):
ATTGAATTTTTCTAAACTTAAATTAAAATATATGAT
Found at i:76230 original size:17 final size:16
Alignment explanation
Indices: 76208--76261 Score: 56
Period size: 17 Copynumber: 3.3 Consensus size: 16
76198 AATCGGGTAT
76208 CGGGTACCCGCAAAATC
1 CGGGTACCCG-AAAATC
**
76225 CGGGTACCCGATTA-C
1 CGGGTACCCGAAAATC
*
76240 CGGGTACCCGTAACATC
1 CGGGTACCCG-AAAATC
76257 CGGGT
1 CGGGT
76262 CGGGACACGG
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
15 11 0.35
16 4 0.13
17 16 0.52
ACGTcount: A:0.22, C:0.33, G:0.28, T:0.17
Consensus pattern (16 bp):
CGGGTACCCGAAAATC
Done.