genome.fa.s1578.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001578.1 Hibiscus syriacus cultivar Beakdansim tig00003141_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104457

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--76	12	6.3	12	76	3	73	82	2	0	14	0.77
15--88	36	2.1	36	89	5	114	77	4	0	18	0.93
10--42	13	2.6	13	90	4	50	90	3	0	6	0.52
5512--5557	24	1.9	24	95	0	83	45	36	10	6	1.65
9719--9771	21	2.5	21	81	6	63	22	24	18	33	1.97
9761--9895	20	6.7	20	89	1	198	40	17	20	20	1.91
10441--10533	33	2.8	33	86	1	114	43	23	20	12	1.86
10529--10641	19	6.1	19	76	13	110	13	22	18	46	1.83
12328--12703	94	4.1	93	94	3	609	21	11	18	47	1.81
12792--12867	19	3.9	19	91	3	116	50	17	21	11	1.77
12792--12867	39	2.0	39	89	2	118	50	17	21	11	1.77
12893--12940	19	2.5	19	86	3	60	8	20	25	45	1.79
12911--12999	19	4.9	19	72	14	80	11	21	20	47	1.81
13445--13511	21	3.2	21	66	6	55	23	35	20	19	1.95
13393--13511	42	2.8	42	81	5	107	22	36	18	22	1.95
15022--15139	19	6.7	19	70	19	85	12	24	19	43	1.86
15028--15119	33	2.8	33	94	0	157	13	23	17	45	1.83
15092--15185	20	4.7	20	72	13	68	21	20	23	35	1.96
17428--17466	14	2.7	14	80	4	51	7	17	20	53	1.68
17656--17709	24	2.2	24	93	0	90	40	20	18	20	1.91
17656--17723	24	2.8	24	84	0	64	38	20	17	23	1.93
18585--18824	21	11.7	21	88	4	294	40	16	20	22	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18574--18825	41	6.1	41	87	5	325	39	16	20	23	1.92
19232--19300	14	5.4	14	73	25	71	15	14	15	53	1.73
19232--19301	24	2.8	26	91	6	117	17	14	15	52	1.74
19553--19602	10	4.8	10	81	15	57	6	8	22	64	1.43
19554--19619	23	2.8	23	86	2	87	9	9	21	60	1.54
19573--19616	14	3.2	14	87	9	56	9	11	22	56	1.62
27565--27663	33	3.1	33	85	2	130	39	21	14	25	1.90
29184--29235	21	2.5	21	100	0	104	17	25	11	46	1.81
32298--32384	33	2.8	30	77	8	93	41	24	12	21	1.88
32321--32396	33	2.3	34	88	4	111	40	22	11	25	1.88
33127--33158	16	2.0	17	88	11	50	40	3	6	50	1.43
36879--36931	2	28.0	2	88	11	85	50	0	0	49	1.00
37596--37717	43	2.8	43	92	0	199	22	18	30	27	1.98
39794--40194	202	2.0	199	98	1	775	21	25	16	35	1.95
41816--41865	21	2.4	21	100	0	100	18	38	20	24	1.93
58078--58109	15	2.1	16	94	5	57	6	25	18	50	1.70
58860--58893	16	2.1	16	94	0	59	32	26	8	32	1.87
60987--61073	29	3.0	29	83	3	113	18	36	27	17	1.93
61082--61134	10	5.3	10	78	17	65	22	50	16	9	1.74
61066--61292	40	5.5	40	70	21	164	22	46	19	11	1.81
61078--61312	30	7.6	30	73	18	169	22	46	19	11	1.81
61122--61201	29	2.8	29	84	0	106	20	40	25	15	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61210--61272	10	6.3	10	80	14	76	22	50	19	7	1.72
60994--61262	128	2.1	128	96	0	493	20	43	21	13	1.86
61220--61312	20	4.7	20	84	10	136	23	50	17	8	1.73
61180--61312	40	3.3	40	85	8	148	22	49	17	10	1.77
61951--61994	21	2.1	21	91	0	70	29	0	15	54	1.42
62273--62367	14	6.3	14	78	15	100	43	4	7	45	1.51
62265--62367	47	2.3	44	86	9	138	43	3	6	45	1.48
62273--62378	33	3.0	36	81	11	98	43	3	7	45	1.50
62328--62386	20	3.2	20	79	13	72	47	3	6	42	1.46
64528--64558	15	2.1	14	94	5	53	54	6	0	38	1.26
64533--64579	16	3.0	16	84	9	53	59	10	0	29	1.31
64620--64700	33	2.5	33	84	11	98	49	12	0	38	1.41
64740--64830	44	2.0	48	85	12	129	48	10	0	40	1.38
64811--64899	41	2.2	40	78	8	90	46	10	1	42	1.45
64939--64977	16	2.3	18	86	8	55	56	5	0	38	1.22
65287--65352	29	2.3	29	91	0	105	22	33	30	13	1.93
65339--65420	32	2.6	32	100	0	164	9	36	26	26	1.88
65511--65571	29	2.1	29	93	0	104	21	27	26	24	1.99
69932--70002	22	3.3	22	84	4	108	38	25	15	21	1.92
69910--70002	43	2.2	41	90	3	141	39	23	15	21	1.91
70007--70099	21	4.5	21	72	2	89	30	25	19	24	1.98
75706--75735	2	15.5	2	93	6	53	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76513--76580	35	1.9	35	87	0	100	45	16	2	35	1.62
79042--79087	20	2.3	19	85	14	58	26	15	8	50	1.73
80633--80672	21	1.9	21	89	0	62	32	22	20	25	1.98
88162--88202	21	2.0	21	95	0	73	26	31	31	9	1.89
94278--94327	15	3.3	15	91	0	82	32	34	20	14	1.92
97410--97456	23	2.2	20	82	17	60	78	0	6	14	0.93
97410--97456	7	6.7	7	83	11	53	78	0	6	14	0.93

Tables:   1

The End!