Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001579.1 Hibiscus syriacus cultivar Beakdansim tig00003144_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 248634
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
File 2 of 2
Found at i:225719 original size:165 final size:163
Alignment explanation
Indices: 225501--226507 Score: 1120
Period size: 165 Copynumber: 6.1 Consensus size: 163
225491 TGCCTTGAGC
* * *
225501 TATGCTGTAAATGATGTG-CCTTGGAGTTGAGCGTAGTCGAACTCAAAGGTC-TTTGGCAGATAG
1 TATGCTGCAAATGATGTGCCCTT-GAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGGCAGATAA
*
225564 CCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAG
65 CCCTTCTCGACTTAAGCTATACTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAG
* *
225629 GTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGT
130 GTC-TTTGGTC-CAGATAACCCTTCTAGACTTAAGT
* * * * *** *
225665 TATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGGGGGTC-TTTGGCAGATAG
1 TATGCTGCAAATGATGTGCCCTTG-AGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGGCAGATAA
*
225729 CCCTTCTCGACTTAAGCTATACTGCAAATGATGTGCCGTT-GAGCTGAGCGTAGTCGAACTCAAA
65 CCCTTCTCGACTTAAGCTATACTGCAAATGATGTGCC-TTGGAGCTGAGCGTAGTCGAACTCGAA
* *
225793 GGTCTTTTGTTGCCAGACAACCCTTCTAGACTTAAGT
129 GGTC-TTTGGT-CCAGATAACCCTTCTAGACTTAAGT
* * *
225830 TGTGCTGCAAATGATATG-CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGA
1 TATGCTGCAAATGATGTGCCCTT-GAGCTGAGCGTAGTCGAACTCAAAGGTC-TT--TTGGCAGA
* * * * * *
225894 TAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTC
62 TAACCCTTCTCGACTTAAGCTATACTGCAAATGATGTG-CCTTGGAGCTGAGCGTAGTCGAACTC
** * * *
225959 GGGGGTCTTTGG--CAGATAGCCCTTCTCGACTTAAGC
126 GAAGGTCTTTGGTCCAGATAACCCTTCTAGACTTAAGT
* * *
225995 TATGCTGTAAATGATGTGCCGTTGAGCTGAACGTAGTCGAACTCAAAGGTCTTTGGTTGGCAGAT
1 TATGCTGCAAATGATGTGCCCTTGAGCTGAGCGTAGTCGAACTCAAAGGTC-TT--TTGGCAGAT
* * * * * *
226060 AACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCG
63 AACCCTTCTCGACTTAAGCTATACTGCAAATGATGTG-CCTTGGAGCTGAGCGTAGTCGAACTCG
* * *
226125 AAGGTCTTTGG--CAGATAGCCCTTCTCGACTTAAGC
127 AAGGTCTTTGGTCCAGATAACCCTTCTAGACTTAAGT
* * * * *
226160 TATACTGCAAATGATATGCCGTTGAGCTGAGCGTAGTCGAACTCAACGGTCTTTTGTTGCCAGAC
1 TATGCTGCAAATGATGTGCCCTTGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTG--G-CAGAT
* * * ** *
226225 AACCCTTCTAGACTTAAGTTGTACTATAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGA
63 AACCCTTCTCGACTTAAGCTATACTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGA
* *
226290 AGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGT
128 AGGTCTTTGG-T-CCAGATAACCCTTCTAGACTTAAGT
* * * * *
226328 TATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGAAGGTC-TTTGGCAGATAG
1 TATGCTGCAAATGATGTGCCCTTG-AGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGGCAGATAA
226392 CCCTTCTCGACTTAAGCTATACTGCAAATGATGTGCCGTT-GAGCTGAGCGTAGTCGAACTC-AA
65 CCCTTCTCGACTTAAGCTATACTGCAAATGATGTGCC-TTGGAGCTGAGCGTAGTCGAACTCGAA
* *
226455 CGGTCTTTTGTTGCCAGACAACCCTTCTAGACTTAAGT
129 -GGTC-TTTGGT-CCAGATAACCCTTCTAGACTTAAGT
*
226493 TGTGCTGCAAATGAT
1 TATGCTGCAAATGAT
226508 TTGTTTTTTA
Statistics
Matches: 737, Mismatches: 83, Indels: 45
0.85 0.10 0.05
Matches are distributed among these distances:
162 3 0.00
164 84 0.11
165 495 0.67
166 14 0.02
168 94 0.13
169 47 0.06
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.29
Consensus pattern (163 bp):
TATGCTGCAAATGATGTGCCCTTGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGGCAGATAAC
CCTTCTCGACTTAAGCTATACTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGG
TCTTTGGTCCAGATAACCCTTCTAGACTTAAGT
Found at i:225943 original size:249 final size:245
Alignment explanation
Indices: 225476--226452 Score: 1259
Period size: 249 Copynumber: 4.0 Consensus size: 245
225466 ATTTTATTGA
* * * * *
225476 CAGATAGCCCTTCTTTGCCTTGAGCTATGCTGTAAATGATGTGCCTTGGAGTTGAGCGTAGTCGA
1 CAGATAGCCCTTC-TCGACTTAAGCTATACTGTAAATGATGTGCCTTGGAGCTGAGCGTAGTCGA
* *
225541 ACTCAAAGGTC--T--TTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG-CC
65 ACTCAAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCC
* * * * * * *
225601 TTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTT
130 TCGAAGCTGAGCGTAATCGAACTCGAAGGTC-TTTGG---CAGATAACCCTTCTCGACTTAAGCT
* * *
225666 ATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGGGGGTCTTTGG
191 ATACTGCAAATGATGTGCCCTCG-AGCTGAGCGTAATCGAACTCGGGGGTCTTTGG
*
225722 CAGATAGCCCTTCTCGACTTAAGCTATACTGCAAATGATGTGCCGTT-GAGCTGAGCGTAGTCGA
1 CAGATAGCCCTTCTCGACTTAAGCTATACTGTAAATGATGTGCC-TTGGAGCTGAGCGTAGTCGA
* * * * * *
225786 ACTCAAAGGTCTTTTGTTGCCAGACAACCCTTCTAGACTTAAGTTGTGCTGCAAATGATATG-CC
65 ACTCAAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCC
* * * *
225850 TTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTT
130 TCGAAGCTGAGCGTAATCGAACTCGAAGGTC--T--TTGGCAGATAACCCTTCTCGACTTAAGCT
* *
225915 ATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGGGGGTCTTTGG
191 ATACTGCAAATGATGTGCCCTCG-AGCTGAGCGTAATCGAACTCGGGGGTCTTTGG
* *
225971 CAGATAGCCCTTCTCGACTTAAGCTATGCTGTAAATGATGTGCCGTT-GAGCTGAACGTAGTCGA
1 CAGATAGCCCTTCTCGACTTAAGCTATACTGTAAATGATGTGCC-TTGGAGCTGAGCGTAGTCGA
226035 ACTCAAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCC
65 ACTCAAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCC
* *
226100 TCGAAGCTGAGTGTAATCGAACTCGAAGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATAC
130 TCGAAGCTGAGCGTAATCGAACTCGAAGGTCTTTGGCAGATAACCCTTCTCGACTTAAGCTATAC
* * * * ***
226165 TGCAAATGATATGCCGTTGAGCTGAGCGTAGTCGAACTCAACGGTCTTTTGTTG
195 TGCAAATGATGTGCCCTCGAGCTGAGCGTAATCGAACTCGGGGGTC-TTTG--G
* * * * * * *
226219 CCAGACAACCCTTCTAGACTTAAGTTGTACTATAAATGATATGCCTTGGAGCTGAGCGTAGTCGA
1 -CAGATAGCCCTTCTCGACTTAAGCTATACTGTAAATGATGTGCCTTGGAGCTGAGCGTAGTCGA
*
226284 ACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCC
65 ACTCAAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCC
* *
226349 TCGAAGCTGAGTGTAATCGAACTCGAAGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATAC
130 TCGAAGCTGAGCGTAATCGAACTCGAAGGTCTTTGGCAGATAACCCTTCTCGACTTAAGCTATAC
* * *
226414 TGCAAATGATGTGCCGTTGAGCTGAGCGTAGTCGAACTC
195 TGCAAATGATGTGCCCTCGAGCTGAGCGTAATCGAACTC
226453 AACGGTCTTT
Statistics
Matches: 665, Mismatches: 52, Indels: 25
0.90 0.07 0.03
Matches are distributed among these distances:
245 75 0.11
246 65 0.10
247 1 0.00
248 4 0.01
249 485 0.73
250 31 0.05
252 4 0.01
ACGTcount: A:0.24, C:0.22, G:0.25, T:0.29
Consensus pattern (245 bp):
CAGATAGCCCTTCTCGACTTAAGCTATACTGTAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAA
CTCAAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCT
CGAAGCTGAGCGTAATCGAACTCGAAGGTCTTTGGCAGATAACCCTTCTCGACTTAAGCTATACT
GCAAATGATGTGCCCTCGAGCTGAGCGTAATCGAACTCGGGGGTCTTTGG
Found at i:226258 original size:414 final size:414
Alignment explanation
Indices: 225501--226507 Score: 1696
Period size: 414 Copynumber: 2.4 Consensus size: 414
225491 TGCCTTGAGC
* * * * * * *
225501 TATGCTGTAAATGATGTG-CCTTGGAGTTGAGCGTAGTCGAACTCAAAGGTCTTTGGCAGATAGC
1 TATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGAAGGTCTTTGGCAGATAGC
*
225565 CCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCC-TTGGAGCTGAGCGTAGTCGAACTCGAAG
66 CCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCGTT-GAGCTGAGCGTAGTCGAACTCAAAG
* * * *
225629 GTCTTTTGG-TCACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGC
130 GTC-TTTGGTTGACAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGTGCCCTCGAAGC
**
225693 TGAGTGTAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATACTGCAAAT
194 TGAGTGTAATCGAACTCGAAGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATACTGCAAAT
*
225758 GATGTGCCGTTGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGTTGCCAGACAACCCTTCTAGA
259 GATATGCCGTTGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGTTGCCAGACAACCCTTCTAGA
* *
225823 CTTAAGTTGTGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTT
324 CTTAAGTTGTACTACAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTT
225888 GGCAGATAACCCTTCTCGACTTAAGT
389 GGCAGATAACCCTTCTCGACTTAAGT
**
225914 TATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGGGGGTCTTTGGCAGATAGC
1 TATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGAAGGTCTTTGGCAGATAGC
* *
225979 CCTTCTCGACTTAAGCTATGCTGTAAATGATGTGCCGTTGAGCTGAACGTAGTCGAACTCAAAGG
66 CCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCGTTGAGCTGAGCGTAGTCGAACTCAAAGG
* *
226044 TCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTG
131 TCTTTGGTTGACAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTG
226109 AGTGTAATCGAACTCGAAGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATACTGCAAATGA
196 AGTGTAATCGAACTCGAAGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATACTGCAAATGA
*
226174 TATGCCGTTGAGCTGAGCGTAGTCGAACTCAACGGTCTTTTGTTGCCAGACAACCCTTCTAGACT
261 TATGCCGTTGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGTTGCCAGACAACCCTTCTAGACT
*
226239 TAAGTTGTACTATAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGG
326 TAAGTTGTACTACAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGG
226304 CAGATAACCCTTCTCGACTTAAGT
391 CAGATAACCCTTCTCGACTTAAGT
226328 TATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGAAGGTCTTTGGCAGATAGC
1 TATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGAAGGTCTTTGGCAGATAGC
* *
226393 CCTTCTCGACTTAAGCTATACTGCAAATGATGTGCCGTTGAGCTGAGCGTAGTCGAACTCAACGG
66 CCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCGTTGAGCTGAGCGTAGTCGAACTCAAAGG
* * * *
226458 TCTTTTGTTGCCAGACAACCCTTCTAGACTTAAGTTGTGCTGCAAATGAT
131 TCTTTGGTTGACAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGAT
226508 TTGTTTTTTA
Statistics
Matches: 555, Mismatches: 36, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
413 22 0.04
414 531 0.96
415 2 0.00
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.29
Consensus pattern (414 bp):
TATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGAAGGTCTTTGGCAGATAGC
CCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCGTTGAGCTGAGCGTAGTCGAACTCAAAGG
TCTTTGGTTGACAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTG
AGTGTAATCGAACTCGAAGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATACTGCAAATGA
TATGCCGTTGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGTTGCCAGACAACCCTTCTAGACT
TAAGTTGTACTACAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGG
CAGATAACCCTTCTCGACTTAAGT
Found at i:227693 original size:84 final size:86
Alignment explanation
Indices: 227599--227827 Score: 268
Period size: 96 Copynumber: 2.6 Consensus size: 86
227589 GGCTAGCTAA
*
227599 ATCCATAAAGCCAGGGCGTTTAACCAATTGCTCTAGAGGGACAGCCCAATAT-GTA-AA-CACCT
1 ATCCATAAAGCCGGGGCGTTTAACCAATTGCTCTAGAGGGACAGCCCAATATAGTATAATCACCT
* *
227661 TTATCAGGTTAGCTGAAATCTT
66 TTATCAGGCTAGCTG-AATATT
*
227683 ATCCATAAAGCCGGGGCGTTTAACCAATTGC-CTTAGAGGGACAGCTCAAGCTTTATTGTATAGT
1 ATCCATAAAGCCGGGGCGTTTAACCAATTGCTC-TAGAGGGACAGC-C---C---A--ATATAGT
227747 ATAATCACCTTTATCAGGCTAGCTGAATATT
56 ATAATCACCTTTATCAGGCTAGCTGAATATT
* *
227778 ATCCATAAAGCCGGGGCGTTTTAACCAATTGCTTTAGAGGGACAACCCAA
1 ATCCATAAAGCCGGGGCG-TTTAACCAATTGCTCTAGAGGGACAGCCCAA
227828 GCTTTATTGT
Statistics
Matches: 123, Mismatches: 7, Indels: 27
0.78 0.04 0.17
Matches are distributed among these distances:
83 1 0.01
84 42 0.34
85 1 0.01
88 1 0.01
89 1 0.01
91 1 0.01
92 1 0.01
93 3 0.02
94 3 0.02
95 26 0.21
96 43 0.35
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (86 bp):
ATCCATAAAGCCGGGGCGTTTAACCAATTGCTCTAGAGGGACAGCCCAATATAGTATAATCACCT
TTATCAGGCTAGCTGAATATT
Found at i:227820 original size:96 final size:95
Alignment explanation
Indices: 227647--227846 Score: 312
Period size: 96 Copynumber: 2.1 Consensus size: 95
227637 GGACAGCCCA
* * * *
227647 ATATGTAAACACCTTTATCAGGTTAGCTGAAATCTTATCCATAAAGCCGGGGCGTTTAACCAATT
1 ATATATAATCACCTTTATCAGGCTAGCTGAAATATTATCCATAAAGCCGGGGCGTTTAACCAATT
* *
227712 GCCTTAGAGGGACAGCTCAAGCTTTATTGT
66 GCCTTAGAGGGACAACCCAAGCTTTATTGT
227742 ATAGTATAATCACCTTTATCAGGCTAGCTG-AATATTATCCATAAAGCCGGGGCGTTTTAACCAA
1 ATA-TATAATCACCTTTATCAGGCTAGCTGAAATATTATCCATAAAGCCGGGGCG-TTTAACCAA
*
227806 TTGCTTTAGAGGGACAACCCAAGCTTTATTGT
64 TTGCCTTAGAGGGACAACCCAAGCTTTATTGT
227838 ATATATAAT
1 ATATATAAT
227847 AGTATAATCT
Statistics
Matches: 96, Mismatches: 7, Indels: 4
0.90 0.07 0.04
Matches are distributed among these distances:
95 32 0.33
96 64 0.67
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32
Consensus pattern (95 bp):
ATATATAATCACCTTTATCAGGCTAGCTGAAATATTATCCATAAAGCCGGGGCGTTTAACCAATT
GCCTTAGAGGGACAACCCAAGCTTTATTGT
Found at i:232697 original size:18 final size:18
Alignment explanation
Indices: 232674--232719 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
232664 AAAACAAAAT
* *
232674 AAATAAAACGAATAATAA
1 AAATAAAAAGAAAAATAA
*
232692 AAATAAAAATAAAAATAA
1 AAATAAAAAGAAAAATAA
232710 ATAATAAAAA
1 A-AATAAAAA
232720 TAATTATATA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
18 16 0.67
19 8 0.33
ACGTcount: A:0.78, C:0.02, G:0.02, T:0.17
Consensus pattern (18 bp):
AAATAAAAAGAAAAATAA
Found at i:232698 original size:6 final size:6
Alignment explanation
Indices: 232687--232722 Score: 63
Period size: 6 Copynumber: 5.8 Consensus size: 6
232677 TAAAACGAAT
232687 AATAAA AATAAA AATAAA AATAAA TAATAAA AATAA
1 AATAAA AATAAA AATAAA AATAAA -AATAAA AATAA
232723 TTATATATTA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 23 0.79
7 6 0.21
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (6 bp):
AATAAA
Found at i:232702 original size:12 final size:13
Alignment explanation
Indices: 232684--232722 Score: 71
Period size: 13 Copynumber: 3.1 Consensus size: 13
232674 AAATAAAACG
232684 AATAATAAAAATA
1 AATAATAAAAATA
232697 AA-AATAAAAATA
1 AATAATAAAAATA
232709 AATAATAAAAATA
1 AATAATAAAAATA
232722 A
1 A
232723 TTATATATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
12 12 0.48
13 13 0.52
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (13 bp):
AATAATAAAAATA
Found at i:232773 original size:38 final size:38
Alignment explanation
Indices: 232721--232807 Score: 97
Period size: 38 Copynumber: 2.2 Consensus size: 38
232711 TAATAAAAAT
*
232721 AATTATATATTATATATATATTT-AAAAATGATTTC-AA
1 AATTATATAATATATATAT-TTTCAAAAATGATTTCGAA
* *
232758 AATCTATATAATATATTTATTTTCGAAAACTGATTTCTGAA
1 AAT-TATATAATATATATATTTTC-AAAAATGATTTC-GAA
232799 AATTATATA
1 AATTATATA
232808 CCATATTTTT
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
37 6 0.14
38 14 0.33
39 11 0.26
40 6 0.14
41 5 0.12
ACGTcount: A:0.45, C:0.06, G:0.05, T:0.45
Consensus pattern (38 bp):
AATTATATAATATATATATTTTCAAAAATGATTTCGAA
Done.