Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000158.1 Hibiscus syriacus cultivar Beakdansim tig00000280_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55328

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1841--1880
21
1.9
21
90
10
64
50
2
0
47
1.14
1803--1880
21
3.9
19
74
17
61
47
2
1
48
1.23
8093--8124
2
16.0
2
100
0
64
50
0
0
50
1.00
8684--8773
44
2.0
44
100
0
180
57
11
8
22
1.60
9675--9710
18
2.1
18
94
5
65
58
0
0
41
0.98
25793--25887
44
2.2
44
92
0
163
44
1
8
46
1.40
26355--26386
15
2.1
15
94
0
55
68
15
0
15
1.21
26915--26952
16
2.4
16
82
8
51
68
2
0
28
1.03
27836--27874
20
1.9
21
89
5
62
48
2
2
46
1.29
28393--28421
8
3.6
8
100
0
58
75
0
0
24
0.80
28391--28430
13
3.1
12
86
13
53
77
0
0
22
0.77
28390--28439
11
4.2
12
79
7
50
76
0
0
24
0.80
28398--28490
11
8.0
11
70
15
62
72
2
3
22
1.10
29660--29697
3
13.0
3
86
5
51
73
0
0
26
0.83
29660--29697
17
2.2
18
95
4
69
73
0
0
26
0.83
30272--30482
37
5.8
37
94
2
381
36
13
23
26
1.92
30272--30488
73
3.0
73
98
0
416
37
13
23
25
1.92
30521--31186
252
2.7
250
88
3
961
23
19
25
31
1.98
31137--31395
110
2.4
109
88
2
371
23
17
24
34
1.96
35101--35129
12
2.3
13
94
5
51
68
0
0
31
0.89
35290--35370
12
7.0
11
71
15
56
72
2
3
20
1.11
36290--36356
33
2.0
33
88
2
98
5
20
26
46
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36526--36561
15
2.4
15
85
0
54
72
0
0
27
0.85
37106--37144
19
2.0
20
90
5
62
38
0
2
58
1.12
42085--42164
41
2.0
41
92
0
133
27
36
25
11
1.90
44389--44427
14
2.9
13
81
7
51
76
0
5
17
0.96
44373--44436
23
2.8
24
78
7
69
73
1
7
17
1.14
45167--45211
23
1.9
24
86
13
67
0
2
33
64
1.06
45730--45761
16
2.1
16
94
5
57
71
0
3
25
1.00
45792--46102
37
8.6
36
75
16
211
45
5
3
45
1.42
45850--45947
31
3.2
31
88
7
130
46
3
3
46
1.33
45913--46145
37
6.2
37
85
9
276
45
6
4
43
1.48
46709--48001
84
15.4
84
83
3
1433
25
19
23
31
1.98
46700--48001
168
7.7
168
85
2
1585
25
19
23
31
1.98
48642--48666
5
5.0
5
100
0
50
60
20
0
20
1.37
49092--49354
95
2.7
95
85
4
305
31
17
16
34
1.93
52806--52848
4
10.0
4
85
9
50
74
0
0
25
0.82
52808--52845
9
4.2
9
80
12
51
76
0
0
23
0.79
52806--52848
18
2.4
18
92
3
70
74
0
0
25
0.82
52808--52887
30
2.6
30
78
5
81
75
1
5
18
1.06
54065--54124
23
2.7
23
84
7
70
75
0
1
23
0.90
54080--54124
15
2.9
15
81
12
54
77
0
0
22
0.76
54064--54119
29
2.0
28
86
10
78
75
0
1
23
0.90
54183--54277
28
3.2
29
82
10
113
51
2
2
44
1.25
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54135--54472
69
4.9
69
71
20
219
47
4
3
43
1.41
54141--54472
35
9.6
34
72
19
203
47
4
3
44
1.41
54493--54527
2
17.5
2
100
0
70
48
0
0
51
1.00

Tables:   1

The End!