genome.fa.s1580.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001580.1 Hibiscus syriacus cultivar Beakdansim tig00003145_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72857

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3085--3138	26	2.1	26	92	0	90	29	7	11	51	1.64
5793--5837	23	2.0	22	83	12	56	64	2	11	22	1.36
7587--8161	67	8.4	66	78	11	347	38	12	19	29	1.88
7761--7852	36	2.6	36	96	0	166	29	9	17	43	1.81
7875--7986	30	3.5	30	65	23	75	41	9	18	30	1.83
7631--8023	207	1.9	207	81	5	481	36	10	19	32	1.87
7972--8252	36	7.9	36	80	13	289	41	16	19	22	1.89
8130--8194	21	3.4	21	68	24	61	43	12	21	23	1.86
7905--8234	138	2.4	140	91	3	524	41	14	19	24	1.89
8114--8252	73	1.9	73	88	1	208	42	16	20	20	1.89
8314--8384	36	2.0	36	91	0	115	40	14	19	25	1.89
8441--8566	36	3.5	36	75	3	128	41	15	15	27	1.87
9818--9999	95	1.9	95	89	0	283	30	19	18	32	1.95
13905--13941	19	2.1	17	90	10	56	70	0	5	24	1.08
14054--14118	19	3.4	18	81	8	58	67	4	0	27	1.10
15748--16109	67	5.3	67	78	12	294	36	10	19	34	1.86
15854--15966	34	3.4	34	89	6	151	31	11	18	38	1.87
16115--16260	36	4.0	36	90	0	202	41	16	19	21	1.90
16137--16201	21	3.4	21	68	24	70	41	12	21	24	1.87
17825--18006	95	1.9	95	86	2	258	31	19	16	32	1.94
20766--20799	17	2.1	16	88	5	50	14	8	0	76	1.01
30996--31029	17	2.1	16	88	5	50	14	8	0	76	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33558--33607	21	2.4	21	100	0	100	28	20	28	24	1.99
33660--33714	20	2.7	21	88	2	85	27	18	32	21	1.96
33894--33952	29	2.0	29	93	3	100	44	20	5	30	1.73
34498--34535	20	1.9	20	84	10	51	47	5	5	42	1.48
35247--35294	19	2.5	20	82	3	62	29	12	6	52	1.63
36589--36643	20	2.7	21	91	2	94	27	16	36	20	1.93
36664--36719	20	2.6	22	83	5	71	25	17	30	26	1.97
36802--36861	30	2.0	30	96	0	111	45	20	5	30	1.72
37922--37986	19	3.4	18	81	8	58	67	4	0	27	1.10
37968--37992	13	1.9	13	100	0	50	72	4	0	24	1.02
39257--39377	4	30.8	4	80	14	110	0	68	0	31	0.90
39261--39388	18	7.2	18	78	16	117	0	67	0	32	0.91
39345--39406	2	31.0	2	87	6	90	1	53	0	45	1.10
39255--39403	8	18.6	8	76	14	121	0	65	0	34	0.98
39255--39406	14	11.0	14	76	13	118	0	64	0	34	0.99
42507--42574	2	34.0	2	100	0	136	50	0	0	50	1.00
47873--47939	34	1.9	34	82	14	84	20	11	19	47	1.81
49512--49566	23	2.4	23	100	0	110	36	21	20	21	1.95
49535--49655	54	2.2	55	86	2	165	35	24	15	23	1.94
49866--50139	136	2.1	131	90	4	433	39	17	12	31	1.87
53942--53994	2	26.5	2	100	0	106	50	0	0	49	1.00
54096--54131	18	2.1	18	89	5	56	58	13	16	11	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55903--55931	15	1.9	15	100	0	58	34	27	31	6	1.83
68289--68327	20	2.0	20	89	0	60	33	23	10	33	1.88

Tables:   1

The End!