genome.fa.s1581.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001581.1 Hibiscus syriacus cultivar Beakdansim tig00003147_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  220942

Tables:   1   2   

This is table  1  of  2  ( 123 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
167--208	2	21.0	2	100	0	84	50	0	0	50	1.00
8331--8366	18	2.0	18	88	0	54	41	2	25	30	1.69
8519--8852	37	9.0	36	74	12	189	35	23	17	23	1.95
8672--8868	37	5.3	37	86	2	236	36	23	14	25	1.93
9013--9114	42	2.5	41	80	4	116	26	22	20	30	1.98
9221--9352	42	3.2	41	76	2	147	25	20	21	33	1.97
8942--9317	203	1.9	203	94	0	671	33	15	18	32	1.93
9216--9341	41	3.0	41	78	1	153	26	19	22	31	1.98
9216--9369	83	1.9	83	88	0	236	26	18	20	33	1.96
9399--9629	56	4.2	54	78	10	209	32	16	21	29	1.95
9506--9631	55	2.3	56	81	8	159	30	15	20	32	1.94
9973--10032	3	20.0	3	77	13	52	36	0	1	61	1.06
9975--9999	8	3.1	8	100	0	50	36	0	0	64	0.94
14027--14051	6	4.2	6	100	0	50	20	16	64	0	1.30
14115--14158	13	3.5	13	90	6	72	18	52	15	13	1.75
14188--14256	30	2.2	31	87	5	95	53	0	0	46	1.00
14254--14308	12	4.6	12	83	0	74	27	47	12	12	1.78
14881--14947	25	2.8	22	78	15	53	44	4	1	49	1.31
15541--16017	242	2.0	243	80	3	539	34	21	10	33	1.87
18804--18962	60	2.6	60	79	4	178	41	3	20	34	1.70
25687--25864	60	3.0	61	83	8	197	41	5	20	33	1.74
28459--28500	21	2.0	20	86	9	57	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36514--36625	40	2.9	38	83	7	145	40	18	23	17	1.91
37374--37414	17	2.5	17	80	11	50	39	0	17	43	1.49
37470--37516	23	2.0	24	88	12	71	59	17	10	12	1.60
39506--39536	2	15.5	2	100	0	62	48	0	0	51	1.00
39994--40023	3	10.0	3	92	0	51	33	3	0	63	1.11
42819--42859	16	2.7	16	85	7	50	58	17	9	14	1.62
42920--42986	16	4.3	16	90	3	102	59	16	10	13	1.60
42928--42990	32	2.0	32	96	0	117	57	19	12	11	1.65
44074--44107	10	3.4	10	95	0	59	52	26	11	8	1.67
44866--44903	18	2.1	18	90	0	58	76	0	7	15	1.01
44945--45035	25	3.4	27	79	11	82	71	0	5	23	1.06
44952--45046	48	2.0	45	84	9	120	70	0	7	22	1.11
45125--45156	3	10.7	3	93	0	55	65	0	3	31	1.08
45201--45235	16	2.3	15	95	5	61	80	0	2	17	0.84
46967--47148	84	2.2	84	86	0	265	23	18	24	32	1.97
47145--47279	33	4.0	33	91	3	207	32	10	17	39	1.84
47248--47373	66	1.9	66	82	8	157	35	11	23	29	1.90
47542--47720	36	5.1	36	68	14	115	37	12	20	29	1.89
47521--47713	101	1.9	102	92	1	325	39	11	20	29	1.87
47723--47878	72	2.2	72	88	1	222	41	12	17	28	1.86
47728--47843	36	3.2	36	67	9	101	39	12	16	31	1.86
52730--53062	43	7.8	42	80	7	235	34	21	21	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52757--53062	128	2.4	128	84	5	361	34	20	21	22	1.96
52730--53062	86	3.9	84	76	8	294	34	21	21	22	1.96
56917--57301	41	9.4	41	79	5	346	34	16	19	29	1.94
56898--57260	165	2.2	166	88	2	518	33	17	19	29	1.94
56941--57257	124	2.6	122	80	9	372	33	17	19	29	1.94
58133--58168	17	2.1	18	89	5	56	77	0	5	16	0.94
58208--58303	12	7.9	12	69	18	56	71	1	7	19	1.15
58351--58375	2	12.5	2	100	0	50	52	0	0	48	1.00
58398--58429	11	2.8	11	95	4	55	65	0	6	28	1.16
58395--58445	3	17.0	3	76	8	50	66	0	5	27	1.14
58485--58536	19	2.7	19	72	16	54	73	0	7	19	1.07
58495--58525	16	1.9	16	100	0	62	77	0	0	22	0.77
60308--60341	4	8.5	4	93	0	59	70	0	2	26	1.01
63007--63070	22	3.0	21	75	16	53	7	17	1	73	1.14
65255--65297	22	2.0	22	90	0	68	18	23	34	23	1.96
67843--67902	23	2.6	23	83	0	84	18	25	28	28	1.98
71112--71152	19	2.1	20	86	4	57	63	7	7	21	1.45
80680--80722	17	2.6	18	82	14	56	11	18	0	69	1.17
88280--88355	39	1.9	39	84	5	100	31	19	14	34	1.92
89685--90553	6	143.8	6	91	3	1359	46	16	3	33	1.63
95405--95541	36	3.8	36	96	0	238	42	13	16	27	1.86
99911--99980	26	2.7	25	82	17	81	10	27	0	62	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108003--108059	22	2.6	22	75	8	62	49	8	3	38	1.51
107796--108623	196	4.2	198	85	4	986	48	9	5	36	1.58
108289--108375	32	2.7	33	75	5	88	51	8	5	34	1.55
108583--108659	32	2.4	32	82	6	86	53	9	7	29	1.61
110615--111090	206	2.3	206	90	0	738	24	21	18	34	1.96
111280--111339	32	1.9	32	86	6	88	60	10	15	15	1.60
115037--115146	12	9.2	12	66	15	57	19	9	17	54	1.69
115040--115146	24	4.5	24	81	0	133	18	9	17	54	1.69
115038--115146	48	2.3	48	91	0	173	18	9	17	55	1.68
116439--116479	15	2.7	15	88	3	64	58	9	4	26	1.50
117209--117485	30	9.2	30	76	9	181	58	9	12	19	1.62
117213--117471	90	2.8	91	77	10	242	58	10	11	19	1.61
117257--117441	59	3.1	58	82	6	181	60	8	10	21	1.54
117212--117485	60	4.6	59	77	8	205	58	9	12	19	1.61
118914--118980	3	22.7	3	93	3	118	65	1	0	32	1.02
119676--119731	27	2.1	27	93	0	94	26	12	26	33	1.92
120859--120891	2	16.5	2	100	0	66	48	0	0	51	1.00
126351--126402	24	2.2	24	82	6	61	57	7	11	23	1.59
128134--128163	4	7.5	4	92	0	51	70	0	3	26	1.03
150268--150293	12	2.2	12	100	0	52	26	19	0	53	1.45
157379--157417	20	1.9	21	84	5	53	10	10	0	79	0.94
159303--159561	131	2.0	130	85	5	353	38	17	10	32	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
159997--160133	60	2.2	61	78	14	149	60	10	10	18	1.57
161796--161880	44	1.9	44	87	0	125	16	5	29	48	1.70
162204--162538	133	2.5	133	87	0	472	29	15	22	32	1.95
162874--162960	41	2.1	41	82	6	104	33	21	18	26	1.96
162998--163739	241	3.1	238	82	4	860	34	15	17	32	1.91
163606--163644	20	2.0	19	85	5	51	25	20	23	30	1.98
165357--165467	44	2.5	44	86	0	150	31	17	17	34	1.93
167398--167436	12	3.2	12	82	7	51	53	7	17	20	1.68
167398--167437	13	3.2	13	85	3	55	55	7	17	20	1.66
169417--169675	131	2.0	130	86	6	364	40	14	11	33	1.81
169989--170072	42	2.0	42	100	0	168	40	21	11	26	1.88
175991--176132	75	1.9	75	91	0	230	33	19	17	29	1.95
178882--178919	19	2.0	19	89	0	58	47	5	0	47	1.24
179929--179959	14	2.3	14	94	5	55	41	19	6	32	1.77
183083--183164	29	2.9	28	78	12	94	62	4	6	26	1.39
183265--183294	4	7.5	4	100	0	60	76	0	0	23	0.78
184401--184454	27	2.0	27	88	0	81	18	12	37	31	1.89
185560--185844	118	2.4	118	81	2	329	25	21	16	36	1.94
186618--186754	64	2.2	63	80	7	152	35	17	21	25	1.95
186742--186799	20	2.7	20	81	10	62	34	20	18	25	1.96
187572--187751	18	10.0	18	89	4	226	21	21	31	25	1.98
187572--187749	54	3.3	54	89	1	268	20	21	31	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
189277--189367	38	2.4	37	83	5	121	47	17	10	24	1.80
190269--190380	56	2.0	54	86	3	152	44	19	8	27	1.79
198109--198146	18	2.1	19	90	5	60	26	2	0	71	1.00
198100--198167	23	2.8	23	80	12	66	26	1	2	69	1.12
204561--204624	20	3.3	18	79	14	65	4	10	3	81	0.96
206868--206929	28	2.3	26	81	10	63	58	9	9	22	1.59
206984--207051	29	2.4	28	76	11	75	60	5	11	22	1.52
208739--208870	60	2.2	60	82	10	162	31	23	4	40	1.75
208765--208906	60	2.4	60	77	8	139	32	23	5	38	1.78
210140--210189	26	1.9	26	88	8	75	54	2	0	44	1.11

Tables:   1   2