Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001582.1 Hibiscus syriacus cultivar Beakdansim tig00003151_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1162828
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 5 of 6
Found at i:864931 original size:26 final size:24
Alignment explanation
Indices: 864878--864948 Score: 79
Period size: 26 Copynumber: 2.8 Consensus size: 24
864868 GAAAAGTTAG
*
864878 AAGAAGAAGAAAAAGAAAAAGAGCAA
1 AAGAAAAAGAAAAAGAAAAAGA--AA
864904 AAGAAAAAGAAAAAGAGCAAAAGAAA
1 AAGAAAAAGAAAAAGA--AAAAGAAA
* *
864930 AAGAAAAAGGATAAGAAAA
1 AAGAAAAAGAAAAAGAAAA
864949 TAAATCAAGT
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
24 3 0.08
26 31 0.77
28 6 0.15
ACGTcount: A:0.75, C:0.03, G:0.21, T:0.01
Consensus pattern (24 bp):
AAGAAAAAGAAAAAGAAAAAGAAA
Found at i:865140 original size:35 final size:35
Alignment explanation
Indices: 865094--865166 Score: 128
Period size: 35 Copynumber: 2.1 Consensus size: 35
865084 CTAAGGTTAT
*
865094 AAGAAGAGCAATCATTTCAAAGATTCATATTCAAC
1 AAGAAGAGCAATCATTTCAAAGATTCAGATTCAAC
*
865129 AAGAAGAGCAATCATTTCAAAGATTCAGATTCAGC
1 AAGAAGAGCAATCATTTCAAAGATTCAGATTCAAC
865164 AAG
1 AAG
865167 CAGATCCAAG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.45, C:0.16, G:0.15, T:0.23
Consensus pattern (35 bp):
AAGAAGAGCAATCATTTCAAAGATTCAGATTCAAC
Found at i:871634 original size:134 final size:134
Alignment explanation
Indices: 871376--872079 Score: 531
Period size: 134 Copynumber: 5.3 Consensus size: 134
871366 AATTGAACTA
* * *
871376 GATTCAATCTTTCCTAAAGAATAGTGGAATGAATTAAAGTCCCCATATATGATTTTCCCTCAAGA
1 GATTCAATCTTACCTAAAGAACAGTGGAATGAATCAAAGTCCCCATATATGATTTTCCCTCAAGA
* * * ** *
871441 AGAAGTGAAACAGATTCATTTCTTTCAAGATTTAATATTCCCTGAGTATTAGTGGAATAAGTCTA
66 AAAAGTGAAACAGATCCATTTATTTCAAGATTTAATATTCCCTGAGTAAAAGTGAAATAAGTCTA
*
871506 CCTT
131 CCTC
* * * *
871510 GATTAAATCTTACCTAAAGAACAGTGGAATGAATCAAAGTCCCCATATCTGATTTTCCTTTAAGA
1 GATTCAATCTTACCTAAAGAACAGTGGAATGAATCAAAGTCCCCATATATGATTTTCCCTCAAGA
* * * * * ** * * *
871575 AAAAGTGGAATATATCCCTTTATTTCAAGATTTGATATTTTCTTAGTAAAATTGAAATAAGTCTT
66 AAAAGTGAAACAGATCCATTTATTTCAAGATTTAATATTCCCTGAGTAAAAGTGAAATAAGTCTA
871640 CCTC
131 CCTC
* * * * * * *** * *
871644 AATTCAATCTTCCCTAAAGAACAGTGGATTGAATTAACA-TCCCTAAATCCAATTTTCTCTAAAG
1 GATTCAATCTTACCTAAAGAACAGTGGAATGAATCAA-AGTCCCCATATATGATTTTCCCTCAAG
* * * * * * * * *
871708 AAAAAG-CATAACAG-TCCCTCTCTTTC-AGATTTGATATTCCCTGAGTAATAGTGGAACAAGTA
65 AAAAAGTGA-AACAGATCCATTTATTTCAAGATTTAATATTCCCTGAGTAAAAGTGAAATAAGTC
* *
871770 TGCATC
129 TACCTC
* * * * ** * * * * * *
871776 GATTCAATCTTCCCTGAACAATAGTATAGTGAATCAACG-CCCCAGATCTGGTTTTCCCTCAGGA
1 GATTCAATCTTACCTAAAGAACAGTGGAATGAATCAAAGTCCCCATATATGATTTTCCCTCAAGA
** * * * * * * * *
871840 TGAAGTGGAACAGATCC-CTCACTTTTAAGATTTGATATTCCCTGAGTAACAGTGGAACAAGTCT
66 AAAAGTGAAACAGATCCATTTA-TTTCAAGATTTAATATTCCCTGAGTAAAAGTGAAATAAGTCT
871904 GA-CTC
130 -ACCTC
* * * * * * *
871909 GATTCAATCTTCCCTGAAGAACAGTGGAATAAATCAACGTTCCCAGATATGATTTTCCCTCGAGA
1 GATTCAATCTTACCTAAAGAACAGTGGAATGAATCAAAGTCCCCATATATGATTTTCCCTCAAGA
* * * * * * * * * *
871974 AAAAGTTAAACATATCCCTCTCTTTCAATATTTGATATTCCCTGAGTAACAGTGGAACAAGTCTA
66 AAAAGTGAAACAGATCCATTTATTTCAAGATTTAATATTCCCTGAGTAAAAGTGAAATAAGTCTA
872039 CCTC
131 CCTC
** *
872043 GATTCAATCTCCCCTGAAGAACAGTGGAATGAATCAA
1 GATTCAATCTTACCTAAAGAACAGTGGAATGAATCAA
872080 TGTTTCTCAA
Statistics
Matches: 453, Mismatches: 106, Indels: 22
0.78 0.18 0.04
Matches are distributed among these distances:
131 25 0.06
132 67 0.15
133 81 0.18
134 279 0.62
135 1 0.00
ACGTcount: A:0.34, C:0.20, G:0.15, T:0.31
Consensus pattern (134 bp):
GATTCAATCTTACCTAAAGAACAGTGGAATGAATCAAAGTCCCCATATATGATTTTCCCTCAAGA
AAAAGTGAAACAGATCCATTTATTTCAAGATTTAATATTCCCTGAGTAAAAGTGAAATAAGTCTA
CCTC
Found at i:871918 original size:265 final size:268
Alignment explanation
Indices: 871377--872079 Score: 675
Period size: 265 Copynumber: 2.6 Consensus size: 268
871367 ATTGAACTAG
* * * * * * ** *
871377 ATTCAATCTTTCCTAAAGAATAGTGGAATGAATTAAAG-TCCCCATATATGATTTTCCCTCAAGA
1 ATTCAATCTTCCCTAAAGAACAGTGGAATAAATCAACGAT-CCCAAATACAATTTTCCCTAAAGA
* * * * * * * *
871441 AGAAG-TGAAACAGATTCATTTCTTTCAAGATTTAATATTCCCTGAGTATTAGTGGAATAAGTCT
65 AAAAGAT-AAACATATCCCTCTCTTTCAAGATTTGATATTCCCTGAGTAATAGTGGAACAAGTCT
* * * * * * * *
871505 ACCTTGATTAAATCTTACCTAAAGAACAGTGGAATGAATCAAAGTCCCCATATCTGATTTTCCTT
129 ACCTCGATTCAATCTTCCCTGAACAACAGTAGAATGAATCAAAGTCCCCAGATCTGATTTTCCCT
* * * * ** * * *
871570 TAAGAAAAAGTGGAATATATCCCTTTATTTCAAGATTTGATATTTTCTTAGTAAAATTGAAATAA
194 CAAGAAAAAGTGGAACAGATCCCTTCATTTCAAGATTTGATATTCCCTGAGTAAAAGTGAAACAA
**
871635 GTCTTCCTCA
259 GTCTGACTCA
* * * * *
871645 ATTCAATCTTCCCTAAAGAACAGTGGATTGAATTAAC-ATCCCTAAATCCAATTTTCTCTAAAGA
1 ATTCAATCTTCCCTAAAGAACAGTGGAATAAATCAACGATCCC-AAATACAATTTTCCCTAAAGA
* *
871709 AAAAGCAT-AACA-GTCCCTCTCTTTC-AGATTTGATATTCCCTGAGTAATAGTGGAACAAGTAT
65 AAAAG-ATAAACATATCCCTCTCTTTCAAGATTTGATATTCCCTGAGTAATAGTGGAACAAGTCT
* * * * * * *
871771 GCATCGATTCAATCTTCCCTGAACAATAGTATAGTGAATCAACG-CCCCAGATCTGGTTTTCCCT
129 ACCTCGATTCAATCTTCCCTGAACAACAGTAGAATGAATCAAAGTCCCCAGATCTGATTTTCCCT
* ** * * *
871835 CAGGATGAAGTGGAACAGATCCC-TCACTTTTAAGATTTGATATTCCCTGAGTAACAGTGGAACA
194 CAAGAAAAAGTGGAACAGATCCCTTCA-TTTCAAGATTTGATATTCCCTGAGTAAAAGTGAAACA
*
871899 AGTCTGACTCG
258 AGTCTGACTCA
* * * ** **
871910 ATTCAATCTTCCCTGAAGAACAGTGGAATAAATCAACGTTCCCAGATATGATTTTCCCTCGAGAA
1 ATTCAATCTTCCCTAAAGAACAGTGGAATAAATCAACGATCCCAAATACAATTTTCCCTAAAGAA
* * *
871975 AAAGTTAAACATATCCCTCTCTTTCAATATTTGATATTCCCTGAGTAACAGTGGAACAAGTCTAC
66 AAAGATAAACATATCCCTCTCTTTCAAGATTTGATATTCCCTGAGTAATAGTGGAACAAGTCTAC
* * *
872040 CTCGATTCAATCTCCCCTGAAGAACAGTGGAATGAATCAA
131 CTCGATTCAATCTTCCCTGAACAACAGTAGAATGAATCAA
872080 TGTTTCTCAA
Statistics
Matches: 349, Mismatches: 77, Indels: 19
0.78 0.17 0.04
Matches are distributed among these distances:
264 3 0.01
265 127 0.36
266 81 0.23
267 80 0.23
268 57 0.16
270 1 0.00
ACGTcount: A:0.34, C:0.20, G:0.15, T:0.31
Consensus pattern (268 bp):
ATTCAATCTTCCCTAAAGAACAGTGGAATAAATCAACGATCCCAAATACAATTTTCCCTAAAGAA
AAAGATAAACATATCCCTCTCTTTCAAGATTTGATATTCCCTGAGTAATAGTGGAACAAGTCTAC
CTCGATTCAATCTTCCCTGAACAACAGTAGAATGAATCAAAGTCCCCAGATCTGATTTTCCCTCA
AGAAAAAGTGGAACAGATCCCTTCATTTCAAGATTTGATATTCCCTGAGTAAAAGTGAAACAAGT
CTGACTCA
Found at i:872263 original size:3 final size:3
Alignment explanation
Indices: 872257--872300 Score: 52
Period size: 3 Copynumber: 13.3 Consensus size: 3
872247 CTGAGTTTTA
872257 ATT ATT ATT ATT ATCCT ATTT ATT ATT ATT ATT ATT ACTT ATT A
1 ATT ATT ATT ATT AT--T A-TT ATT ATT ATT ATT ATT A-TT ATT A
872301 ATGTTATAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
3 29 0.78
4 5 0.14
5 2 0.05
6 1 0.03
ACGTcount: A:0.32, C:0.07, G:0.00, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:874997 original size:42 final size:42
Alignment explanation
Indices: 874932--875013 Score: 119
Period size: 42 Copynumber: 2.0 Consensus size: 42
874922 ACTTAGTAAG
*
874932 TCCTTCAGGCCATCAGTAAGTCTTTCGAGCATGATGATTAAA
1 TCCTTCAGGCCATCAGTAAGTCTTTCGAGCAAGATGATTAAA
* * * *
874974 TCCTTCGGGTCATCTGTATGTCTTTCGAGCAAGATGATTA
1 TCCTTCAGGCCATCAGTAAGTCTTTCGAGCAAGATGATTA
875014 GTTCTTGAGG
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.34
Consensus pattern (42 bp):
TCCTTCAGGCCATCAGTAAGTCTTTCGAGCAAGATGATTAAA
Found at i:876954 original size:31 final size:31
Alignment explanation
Indices: 876914--876988 Score: 89
Period size: 31 Copynumber: 2.4 Consensus size: 31
876904 CTAAGACGAC
* *
876914 TCTTAGGTAGG-CTCTGCGGCCTCGATATCTT
1 TCTTGGGTAGGCCT-TGCGGCCTCGAGATCTT
* *
876945 TCTTGGGTAGGCCTTGCGGCCTTGAGATTTT
1 TCTTGGGTAGGCCTTGCGGCCTCGAGATCTT
*
876976 TCTTGGTTAGGCC
1 TCTTGGGTAGGCC
876989 CCGTAACCCT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
31 36 0.95
32 2 0.05
ACGTcount: A:0.11, C:0.23, G:0.29, T:0.37
Consensus pattern (31 bp):
TCTTGGGTAGGCCTTGCGGCCTCGAGATCTT
Found at i:883032 original size:22 final size:23
Alignment explanation
Indices: 883007--883050 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 23
882997 TAATGATAGT
*
883007 TTGGCTTAGTTTGAG-TGTAATA
1 TTGGATTAGTTTGAGATGTAATA
* *
883029 TTGGATTGGTTTTAGATGTAAT
1 TTGGATTAGTTTGAGATGTAAT
883051 TGAGATGAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.23, C:0.02, G:0.27, T:0.48
Consensus pattern (23 bp):
TTGGATTAGTTTGAGATGTAATA
Found at i:883278 original size:22 final size:23
Alignment explanation
Indices: 883227--883287 Score: 63
Period size: 22 Copynumber: 2.7 Consensus size: 23
883217 TTGACCAGTG
* *
883227 TGACCGTTGACCTTGACCAATCA
1 TGACCGTTGACTTTGACCAAGCA
* *
883250 -GATCGTTGACTTTGACC-GGCA
1 TGACCGTTGACTTTGACCAAGCA
*
883271 TGACCGTTAACTTTGAC
1 TGACCGTTGACTTTGAC
883288 TTTGACTGAA
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
21 2 0.06
22 29 0.94
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (23 bp):
TGACCGTTGACTTTGACCAAGCA
Found at i:885280 original size:134 final size:132
Alignment explanation
Indices: 885025--885539 Score: 500
Period size: 134 Copynumber: 3.8 Consensus size: 132
885015 GCGCTTCGAA
* * * * * *
885025 CTCGATTTAATCTGCCCTGAAGAACAGTTGAATGAATCAACATTTCCAT-ATCTAATTTTCCCTC
1 CTCGATTCAATCT-TCCTGAAGAACAGTGGAATGAATCAAC-GTCCCATGATATAATTTTCCCTC
* * * * * * * *
885089 AAGAAGGAGCGGAACAGATCCATCTCTTTCAAGATTAT-ATATTCCCTAAGTAACAGTGGAACAA
64 AAGAAGCAGCGGAACAGATCCCTCTTTTTCCATATT-TGATCTTCCCTGAGGAACAGTGGAACAA
885153 GTCTT
128 GTCTT
* ** * * *
885158 CTTTGATTCAATCATTCCTGAAGAACAGTACAATGAATCAACGTCCCCTGATCTAATTTTCCCTT
1 C-TCGATTCAATC-TTCCTGAAGAACAGTGGAATGAATCAACGTCCCATGATATAATTTTCCCTC
* * * * *
885223 AAAAAGTAGCGGAACAAATCCCTCTTTATCCATATTTGATCTTGCCTGAGGAACAGTGGAACAAG
64 AAGAAGCAGCGGAACAGATCCCTCTTTTTCCATATTTGATCTTCCCTGAGGAACAGTGGAACAAG
885288 TCTAT
129 TCT-T
* * *
885293 CTCGATTCAATCTTTCCTTAAGAACAGTGGAATGAGT-AATCGTCCCCA-GATATGATTTTCCCT
1 CTCGATTCAATC-TTCCTGAAGAACAGTGGAATGAATCAA-CGT-CCCATGATATAATTTTCCCT
* * * * *
885356 CAAGAAGCAGTGGAACAGATGCCACTTTTTCCAAATTTGATCTTCCGTGAGGAACAGTGGAACAA
63 CAAGAAGCAGCGGAACAGATCCCTCTTTTTCCATATTTGATCTTCCCTGAGGAACAGTGGAACAA
*
885421 GTCTA
128 GTCTT
* * * * *
885426 CATCGATTCAATCTTCCCTGAATAATACTGGAATGAATCAAC-TTCCATAGATATGATTTTCCCT
1 C-TCGATTCAATCTT-CCTGAAGAACAGTGGAATGAATCAACGTCCCAT-GATATAATTTTCCCT
* * * *
885490 TAAGAAGCAGTGGAATAGATCCCTCTTTTTCCATATTTAATCTTCCCTGA
63 CAAGAAGCAGCGGAACAGATCCCTCTTTTTCCATATTTGATCTTCCCTGA
885540 AGATCAGTAG
Statistics
Matches: 315, Mismatches: 55, Indels: 23
0.80 0.14 0.06
Matches are distributed among these distances:
132 3 0.01
133 12 0.04
134 292 0.93
135 8 0.03
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (132 bp):
CTCGATTCAATCTTCCTGAAGAACAGTGGAATGAATCAACGTCCCATGATATAATTTTCCCTCAA
GAAGCAGCGGAACAGATCCCTCTTTTTCCATATTTGATCTTCCCTGAGGAACAGTGGAACAAGTC
TT
Found at i:885871 original size:3 final size:3
Alignment explanation
Indices: 885863--885928 Score: 107
Period size: 3 Copynumber: 22.3 Consensus size: 3
885853 TTTCATCCCG
*
885863 TTA TTA TTA TTA TTA -TA ATA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
885910 TTA TTA TTA TTA TTT TTA T
1 TTA TTA TTA TTA TTA TTA T
885929 CAGGCATTAC
Statistics
Matches: 59, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
2 2 0.03
3 57 0.97
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:887770 original size:125 final size:126
Alignment explanation
Indices: 887459--887816 Score: 400
Period size: 125 Copynumber: 2.8 Consensus size: 126
887449 TCGATTTTGA
* * ** *
887459 AAATAGTAATATCTCATCATTTCGGTTAGAGTAATAAATGACTGATTTAAGGCATGAGAGGCCAT
1 AAATAATAATATCTCTTCATTTCGAATAGAGTAATAAATGACT-ATTTAAGGCATGAGAGGTCAT
* * **
887524 TTACTCTCGATTGGAAATAATTAGATATTATCGTTTTCTCTCTAGTTAATATTATTTTTAAGACG
65 TTATTCTCGATTGGAAAT-ATTAGATATTATCGTTTTCACTC-AG-TAATAGCATTTTTAAGACG
* * * * *
887589 AAATAATAATATCTCTTCATTTCGAGTAGAGTAATAAATTACTGCTTTAAGACATGAGAGGTGAT
1 AAATAATAATATCTCTTCATTTCGAATAGAGTAATAAATGACT-ATTTAAGGCATGAGAGGTCAT
* * * *
887654 TTATTCTCGACTAGAAATCATTAGATCTTATCGTTTTCACTC-G-AATCGCA-TTTTAAGACG
65 TTATTCTCGATTGGAAAT-ATTAGATATTATCGTTTTCACTCAGTAATAGCATTTTTAAGACG
* * * *
887714 AAATAATGATATCTCTTCATTTC-AATCGGGATAATAAATGACTATTTTAAGGCATGAAAGGTCA
1 AAATAATAATATCTCTTCATTTCGAATAGAG-TAATAAATGACTA-TTTAAGGCATGAGAGGTCA
*
887778 TTTATTCTCGATTGGAAATATTTAGATATTATTGTTTTC
64 TTTATTCTCGATTGGAAATA-TTAGATATTATCGTTTTC
887817 TCTCTTAAAA
Statistics
Matches: 194, Mismatches: 31, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
124 5 0.03
125 92 0.47
126 4 0.02
128 1 0.01
130 92 0.47
ACGTcount: A:0.34, C:0.13, G:0.15, T:0.38
Consensus pattern (126 bp):
AAATAATAATATCTCTTCATTTCGAATAGAGTAATAAATGACTATTTAAGGCATGAGAGGTCATT
TATTCTCGATTGGAAATATTAGATATTATCGTTTTCACTCAGTAATAGCATTTTTAAGACG
Found at i:893759 original size:22 final size:19
Alignment explanation
Indices: 893724--893777 Score: 56
Period size: 22 Copynumber: 2.7 Consensus size: 19
893714 TAAAATTTTA
*
893724 AAAAAATGAA-AAATAAAT
1 AAAAAATAAAGAAATAAAT
*
893742 AAATAATATAAATGAAATAATT
1 AAA-AA-ATAAA-GAAATAAAT
893764 AAAAAATAAAGAAA
1 AAAAAATAAAGAAA
893778 ACCATAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
18 3 0.10
19 6 0.20
20 9 0.30
21 2 0.07
22 10 0.33
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.20
Consensus pattern (19 bp):
AAAAAATAAAGAAATAAAT
Found at i:893761 original size:14 final size:13
Alignment explanation
Indices: 893736--893772 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
893726 AAAATGAAAA
893736 ATAAATAAATAAT
1 ATAAATAAATAAT
893749 ATAAATGAAATAAT
1 ATAAAT-AAATAAT
893763 -TAAA-AAATAA
1 ATAAATAAATAA
893773 AGAAAACCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
11 6 0.26
13 10 0.43
14 7 0.30
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (13 bp):
ATAAATAAATAAT
Found at i:897274 original size:18 final size:18
Alignment explanation
Indices: 897248--897282 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
897238 TAGAATGGTT
897248 TTATGAAATTGTATTTTAA
1 TTATGAAATTGT-TTTTAA
897267 TTAT-AAATTGTTTTTA
1 TTATGAAATTGTTTTTA
897283 TGATATCTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 7 0.44
19 4 0.25
ACGTcount: A:0.34, C:0.00, G:0.09, T:0.57
Consensus pattern (18 bp):
TTATGAAATTGTTTTTAA
Found at i:911129 original size:16 final size:15
Alignment explanation
Indices: 911101--911139 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
911091 AAATCGAATT
*
911101 AAAAAAATTAAAATA
1 AAAAAAATAAAAATA
911116 AAAAATAATAAAAATA
1 AAAAA-AATAAAAATA
911132 AAACAAAA
1 AAA-AAAA
911140 ACAAAAACAG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 5 0.24
16 14 0.67
17 2 0.10
ACGTcount: A:0.82, C:0.03, G:0.00, T:0.15
Consensus pattern (15 bp):
AAAAAAATAAAAATA
Found at i:913065 original size:135 final size:135
Alignment explanation
Indices: 912859--913745 Score: 774
Period size: 135 Copynumber: 6.6 Consensus size: 135
912849 ATTCGAGGTA
* * * * *
912859 TTGTGAATCTAGCAATTGGTCGAACAAGTTCTTCTCATTATGAATTTCTTCTCCCTCTGTCAGA-
1 TTGTGAATCTAGTAATAGGTCAAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCTGTCGGAT
* * * * *
912923 CAGGTTCTTCTCATTATAAACTCTCCATCGAAATATTAATCCCTCTATAGAGGCGTTATTGATTC
66 GA-GTTCTTCTCATTATGAACTCTCCATCGAAATATTAATCCCTCAATAGAGGCGTCACTGATTC
*
912988 GAAGTG
130 GAAATG
* * * * *
912994 TTGTAAATCTAGTAATAGGTCGAACAAGTTCATCTCATTATGAACTTCTTCCCCCTCTGTCGGAC
1 TTGTGAATCTAGTAATAGGTCAAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCTGTCGGAT
* * * * * * *
913059 GAGTTCTTCTCATTATGAACTCTCCATCGAAATGTTAATCCCACTATCGAGGCATTATTGATTCG
66 GAGTTCTTCTCATTATGAACTCTCCATCGAAATATTAATCCCTCAATAGAGGCGTCACTGATTCG
*
913124 AAGTG
131 AAATG
* * *
913129 TTGTGAATCTAGCAATAGGTCAAACAAGTTATTCTCATTATAAACTTCTTCTCCCTCTGTCGGAT
1 TTGTGAATCTAGTAATAGGTCAAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCTGTCGGAT
* * * * * * *
913194 GAGTTCTTCTCATTATGAACGCTCCTTC-AAAAATGTCAATCCCACAAGAGATGTGTCACTGATA
66 GAGTTCTTCTCATTATGAACTCTCCATCGAAATAT-T-AATCCCTCAATAGAGGCGTCACTGAT-
913258 T-GAAAT-
128 TCGAAATG
* * * * *
913264 TTCGTGACTCGAGTTATAGGTC-AACAAGCTCTTCTCATTATGAACTTCGTCTCCCTCTGTCGGA
1 TT-GTGAATCTAGTAATAGGTCAAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCTGTCGGA
* ** * ** ** * *
913328 TGAGTTCTTCTTAACATGAACTATCCATTTAAA-AGGTTAATCCCTCAAGCGAGGCATCGCTGAT
65 TGAGTTCTTCTCATTATGAACTCTCCATCGAAATA--TTAATCCCTCAATAGAGGCGTCACTGAT
913392 TCGAAATG
128 TCGAAATG
* * ** * * * ** *
913400 TCGTGAATCGAGCGATAGTTCAAACAAGCTCTTCTCATTATGAACTTATTCTCCCTCTAAAC-AA
1 TTGTGAATCTAGTAATAGGTCAAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCT-GTCGGA
** * * ** * *
913464 TGAGTTCTTCTCATTATGAACTCTTAATTTGAAATGA-TAATCCCTAAAGCGGGGCATCACTGAT
65 TGAGTTCTTCTCATTATGAACTCTCCA-TCGAAAT-ATTAATCCCTCAATAGAGGCGTCACTGAT
*
913528 TCGAAATA
128 TCGAAATG
* * * * * * * * *
913536 TCGTGAATCGAGTGATAGGTCAAACAAGTTTTTTTCAATATGAACTTATTCTCCCTCAGTCGCAT
1 TTGTGAATCTAGTAATAGGTCAAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCTGTCGGAT
* * *
913601 GAGTTCTTCTCATTTTTAACTCTCCATTTCG-ACTATTAATCCCTC-ATGAGAGGCGTCACTGA-
66 GAGTTCTTCTCATTATGAACTCTCCA--TCGAAATATTAATCCCTCAAT-AGAGGCGTCACTGAT
913663 TCGAAA-G
128 TCGAAATG
* * ** * *
913670 TTGTGAAT-TGAGTGATTGGTTGACCAAGCTCTTCTCATTATGAACTTCTTCTCCCTCTGTCGGA
1 TTGTGAATCT-AGTAATAGGTCAAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCTGTCGGA
*
913734 TGATTTCTTCTC
65 TGAGTTCTTCTC
913746 TGTTGAGTTA
Statistics
Matches: 620, Mismatches: 112, Indels: 41
0.80 0.14 0.05
Matches are distributed among these distances:
134 66 0.11
135 316 0.51
136 226 0.36
137 11 0.02
139 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.35
Consensus pattern (135 bp):
TTGTGAATCTAGTAATAGGTCAAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCTGTCGGAT
GAGTTCTTCTCATTATGAACTCTCCATCGAAATATTAATCCCTCAATAGAGGCGTCACTGATTCG
AAATG
Found at i:913526 original size:271 final size:272
Alignment explanation
Indices: 912881--913745 Score: 743
Period size: 271 Copynumber: 3.2 Consensus size: 272
912871 CAATTGGTCG
* * ** *
912881 AACAAGTTCTTCTCATTATGAATTTCTTCTCCCTCTGTCAGACA-G-GTTCTTCTCATTATAAAC
1 AACAAGCTCTTCTCATTATGAACTTCTTCTCCCTCTAAC-GA-ATGAGTTCTTCTCATTATGAAC
* * * * * * * * * * * * * *
912944 TCTCCA-TCGAAATAT-T-AATCCCTCTATAGAGGCGTTATTGATTCGAAGTGTTGTAAATCTAG
64 GCT-AATTC-AAAAATGTCAATCCCACAAGAGAGGCATCACTGATTCGAAATATCGTGAATCGAG
* * * * *
913006 TAATAGGTCGAACAAGTTCATCTCATTATGAACTTCTTCCCCCTCTGTCGGACGAGTTCTTCTCA
127 TGATAGGTCAAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCA
** * * * * * *
913071 TTATGAACTCTCCA-TCGAAATGTTAATCCCACTATCGAGGCATTATTGATTCGAAGTGTTGTGA
192 TTATGAACTCTCCATTTAAAATGTTAATCCCTCAAGCGAGGCATCACTGATTCGAAATGTTGTGA
* * *
913135 ATCTAGCAATAGGTCA
257 ATCGAGCGATAGTTCA
* * * ** *
913151 AACAAGTTATTCTCATTATAAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACGC
1 AACAAGCTCTTCTCATTATGAACTTCTTCTCCCTCTAACGAATGAGTTCTTCTCATTATGAACGC
** * ** * * *
913216 TCCTTCAAAAATGTCAATCCCACAAGAGATGTGTCACTGATAT-GAAATTTCGTGACTCGAGTTA
66 TAATTCAAAAATGTCAATCCCACAAGAGAGGCATCACTGAT-TCGAAATATCGTGAATCGAGTGA
* * * **
913280 TAGGTC-AACAAGCTCTTCTCATTATGAACTTCGTCTCCCTCTGTCGGATGAGTTCTTCTTAACA
130 TAGGTCAAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTA
* * * *
913344 TGAACTATCCATTTAAAAGGTTAATCCCTCAAGCGAGGCATCGCTGATTCGAAATGTCGTGAATC
195 TGAACTCTCCATTTAAAATGTTAATCCCTCAAGCGAGGCATCACTGATTCGAAATGTTGTGAATC
913409 GAGCGATAGTTCA
260 GAGCGATAGTTCA
* *
913422 AACAAGCTCTTCTCATTATGAACTTATTCTCCCTCTAAAC-AATGAGTTCTTCTCATTATGAACT
1 AACAAGCTCTTCTCATTATGAACTTCTTCTCCCTCT-AACGAATGAGTTCTTCTCATTATGAACG
** * *
913486 CTTAATT-TGAAATGAT-AATCCCTA-AAGCGGGGCATCACTGATTCGAAATATCGTGAATCGAG
65 C-TAATTCAAAAATG-TCAATCCC-ACAAGAGAGGCATCACTGATTCGAAATATCGTGAATCGAG
* * * * * *
913548 TGATAGGTCAAACAAGTTTTTTTCAATATGAACTTATTCTCCCTCAGTCGCATGAGTTCTTCTCA
127 TGATAGGTCAAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCA
* * ** * * * * *
913613 TTTTTAACTCTCCATTTCGACTATTAATCCCTCATGAGAGGCGTCACTGA-TCGAAA-GTTGTGA
192 TTATGAACTCTCCATTTAAAATGTTAATCCCTCAAGCGAGGCATCACTGATTCGAAATGTTGTGA
* * * *
913676 ATTGAGTGATTGGTT-G
257 ATCGAGCGA-TAGTTCA
* ** * *
913692 ACCAAGCTCTTCTCATTATGAACTTCTTCTCCCTCTGTCGGATGATTTCTTCTC
1 AACAAGCTCTTCTCATTATGAACTTCTTCTCCCTCTAACGAATGAGTTCTTCTC
913746 TGTTGAGTTA
Statistics
Matches: 481, Mismatches: 99, Indels: 30
0.79 0.16 0.05
Matches are distributed among these distances:
268 1 0.00
269 9 0.02
270 178 0.37
271 204 0.42
272 89 0.19
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.35
Consensus pattern (272 bp):
AACAAGCTCTTCTCATTATGAACTTCTTCTCCCTCTAACGAATGAGTTCTTCTCATTATGAACGC
TAATTCAAAAATGTCAATCCCACAAGAGAGGCATCACTGATTCGAAATATCGTGAATCGAGTGAT
AGGTCAAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTAT
GAACTCTCCATTTAAAATGTTAATCCCTCAAGCGAGGCATCACTGATTCGAAATGTTGTGAATCG
AGCGATAGTTCA
Found at i:914517 original size:64 final size:63
Alignment explanation
Indices: 914449--914629 Score: 220
Period size: 64 Copynumber: 2.8 Consensus size: 63
914439 TTGGAACACT
* ***
914449 TGATGCATCGGTGCACCAAGTGTGCATCGATGCATGAAATGCATTCGATGTTTGAAAAATAGTC
1 TGATGCATCGATGCATGGAGTGTGCATCGATGCATGAAATGCATTCGATGTTTG-AAAATAGTC
** * *
914513 TGATGCATCGATGCATGGCTTGTGCATCGATGCATCAAATGCATTCGATGTTTTGAAAATATTC
1 TGATGCATCGATGCATGGAGTGTGCATCGATGCATGAAATGCATTCGATG-TTTGAAAATAGTC
* * *
914577 AGAGTGCATCGATGCATGGAGAGTGCATC-AGTGCATGGAATGCATTCGATGTT
1 TGA-TGCATCGATGCATGGAGTGTGCATCGA-TGCATGAAATGCATTCGATGTT
914630 CAATTAATTC
Statistics
Matches: 100, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
64 56 0.56
65 44 0.44
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.30
Consensus pattern (63 bp):
TGATGCATCGATGCATGGAGTGTGCATCGATGCATGAAATGCATTCGATGTTTGAAAATAGTC
Found at i:914601 original size:19 final size:19
Alignment explanation
Indices: 914577--914627 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 19
914567 GAAAATATTC
914577 AGAGTGCATCGATGCATGG
1 AGAGTGCATCGATGCATGG
914596 AGAGTGCATC-AGTGCATGG
1 AGAGTGCATCGA-TGCATGG
914615 A-A-TGCATTCGATG
1 AGAGTGCA-TCGATG
914628 TTCAATTAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
17 4 0.14
18 6 0.21
19 19 0.66
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.24
Consensus pattern (19 bp):
AGAGTGCATCGATGCATGG
Found at i:914603 original size:65 final size:65
Alignment explanation
Indices: 914470--914629 Score: 218
Period size: 65 Copynumber: 2.5 Consensus size: 65
914460 TGCACCAAGT
* ***
914470 GTGCATCGATGCATGAAATGCATTCGATG-TTTGAAAAATAGTCTGATGCATCGATGCATGGCTT
1 GTGCATCGATGCATGAAATGCATTCGATGTTTTGAAAAATAGTCAGATGCATCGATGCATGGAGA
* *
914534 GTGCATCGATGCATCAAATGCATTCGATGTTTTG-AAAATATTCAGAGTGCATCGATGCATGGAG
1 GTGCATCGATGCATGAAATGCATTCGATGTTTTGAAAAATAGTCAGA-TGCATCGATGCATGGAG
914598 A
65 A
*
914599 GTGCATC-AGTGCATGGAATGCATTCGATGTT
1 GTGCATCGA-TGCATGAAATGCATTCGATGTT
914630 CAATTAATTC
Statistics
Matches: 85, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
64 39 0.46
65 46 0.54
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.31
Consensus pattern (65 bp):
GTGCATCGATGCATGAAATGCATTCGATGTTTTGAAAAATAGTCAGATGCATCGATGCATGGAGA
Found at i:914669 original size:65 final size:64
Alignment explanation
Indices: 914471--914678 Score: 207
Period size: 65 Copynumber: 3.2 Consensus size: 64
914461 GCACCAAGTG
* * *
914471 TGCATC-GATGCATGAAATGCATTCGATGTTTGAAAAATAGTCTGATGCATCGATGCATGG-CTT
1 TGCATCAG-TGCATGAAATGCATTCGATGTTT-CAAAATATTCAGATGCATCGATGCATGGAC-T
914534 G-
63 GA
* *
914535 TGCATC-GATGCATCAAATGCATTCGATGTTTTGAAAATATTCAGAGTGCATCGATGCATGGA--
1 TGCATCAG-TGCATGAAATGCATTCGATG-TTTCAAAATATTCAGA-TGCATCGATGCATGGACT
914597 GA
63 GA
* *
914599 GTGCATCAGTGCATGGAATGCATTCGATG-TTC-AATTAATTCATCGATGCATCGATGCATGGAC
1 -TGCATCAGTGCATGAAATGCATTCGATGTTTCAAAAT-ATTCA--GATGCATCGATGCATGGAC
914662 TGA
62 TGA
914665 TGCATCAGTGCATG
1 TGCATCAGTGCATG
914679 CCTTTGAATA
Statistics
Matches: 125, Mismatches: 8, Indels: 21
0.81 0.05 0.14
Matches are distributed among these distances:
62 3 0.02
63 8 0.06
64 53 0.42
65 58 0.46
66 3 0.02
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (64 bp):
TGCATCAGTGCATGAAATGCATTCGATGTTTCAAAATATTCAGATGCATCGATGCATGGACTGA
Found at i:923139 original size:64 final size:63
Alignment explanation
Indices: 923071--923251 Score: 200
Period size: 64 Copynumber: 2.8 Consensus size: 63
923061 TTGGAACACT
* *** *
923071 TGATGCATCGGTGCACCAAGTGTGCATCGATGCATGAAAAGCATTCGATGTTTGAAAAATAGCC
1 TGATGCATCGATGCATGGAGTGTGCATCGATGCATGAAATGCATTCGATGTTTG-AAAATAGCC
** * * **
923135 TGATGCATCGATGCATGGCTTGTGCATCGATGTATCAAATGCATTCGATGTTTTGAAAATATTC
1 TGATGCATCGATGCATGGAGTGTGCATCGATGCATGAAATGCATTCGATG-TTTGAAAATAGCC
* * * *
923199 AGAGTGCATCGATGCATGGAGAGTGCATCGGTGCATGGAATGCATTCGATGTT
1 TGA-TGCATCGATGCATGGAGTGTGCATCGATGCATGAAATGCATTCGATGTT
923252 CAATTAATTC
Statistics
Matches: 96, Mismatches: 19, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
64 52 0.54
65 44 0.46
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.29
Consensus pattern (63 bp):
TGATGCATCGATGCATGGAGTGTGCATCGATGCATGAAATGCATTCGATGTTTGAAAATAGCC
Found at i:923223 original size:19 final size:19
Alignment explanation
Indices: 923199--923249 Score: 70
Period size: 19 Copynumber: 2.7 Consensus size: 19
923189 GAAAATATTC
923199 AGAGTGCATCGATGCATGG
1 AGAGTGCATCGATGCATGG
*
923218 AGAGTGCATCGGTGCATGG
1 AGAGTGCATCGATGCATGG
923237 A-A-TGCATTCGATG
1 AGAGTGCA-TCGATG
923250 TTCAATTAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 4 0.14
18 6 0.21
19 19 0.66
ACGTcount: A:0.25, C:0.16, G:0.35, T:0.24
Consensus pattern (19 bp):
AGAGTGCATCGATGCATGG
Found at i:923225 original size:65 final size:65
Alignment explanation
Indices: 923092--923251 Score: 198
Period size: 65 Copynumber: 2.5 Consensus size: 65
923082 TGCACCAAGT
* * ***
923092 GTGCATCGATGCATGAAAAGCATTCGATG-TTTGAAAAATAGCCTGATGCATCGATGCATGGCTT
1 GTGCATCGATGCATGAAATGCATTCGATGTTTTGAAAAATAGCCAGATGCATCGATGCATGGAGA
* * **
923156 GTGCATCGATGTATCAAATGCATTCGATGTTTTG-AAAATATTCAGAGTGCATCGATGCATGGAG
1 GTGCATCGATGCATGAAATGCATTCGATGTTTTGAAAAATAGCCAGA-TGCATCGATGCATGGAG
923220 A
65 A
* *
923221 GTGCATCGGTGCATGGAATGCATTCGATGTT
1 GTGCATCGATGCATGAAATGCATTCGATGTT
923252 CAATTAATTC
Statistics
Matches: 81, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
64 35 0.43
65 46 0.57
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (65 bp):
GTGCATCGATGCATGAAATGCATTCGATGTTTTGAAAAATAGCCAGATGCATCGATGCATGGAGA
Found at i:923892 original size:136 final size:136
Alignment explanation
Indices: 923641--924222 Score: 709
Period size: 136 Copynumber: 4.3 Consensus size: 136
923631 CTTCTCATTA
* * *
923641 TCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTTTCAATTTGAAAGATTAATCCCTCAAGC
1 TCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCTATTTGAAAGATTAATCACTCAAGC
** * * * ** * * *
923706 AAGGTATCACTGATTCGGAATGACGTGACTCGAGTAATAGGTCGAGCAAGCTATTCTCAATATGA
66 AAGGCGTCACTAATTCGAAATGACGTGAATCGAGCGATAGGTCGAACAAGCTCTTCTCATTATGA
923771 ACTTCT
131 ACTTCT
* * * * *
923777 TCTCCCTCGGTTGGATGAGTTGTTCTCATTATGAACTCTCTATTTGAAAGGTTAATCACTCAAGA
1 TCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCTATTTGAAAGATTAATCACTCAAGC
* ** * *
923842 AAGGCGTCACTAATTCAAAAT-ACCGTGAATCGAGCGATAGGTTTAACAAGCTCTTATCATTATT
66 AAGGCGTCACTAATTCGAAATGA-CGTGAATCGAGCGATAGGTCGAACAAGCTCTTCTCATTATG
923906 AACTTCT
130 AACTTCT
* * * *
923913 TCTCCCACTGTCGGATGAGTTCTTCTCATTATGAACTTTCTATTTGAAAGGTTAATCCCTCAAGC
1 TCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCTATTTGAAAGATTAATCACTCAAGC
* * * * * * *
923978 GAGGCGTCGCTTATTCGAAATGTCGTGAATTGAGCGATAAGTCGAACAAACTCTTCTCATTATGA
66 AAGGCGTCACTAATTCGAAATGACGTGAATCGAGCGATAGGTCGAACAAGCTCTTCTCATTATGA
*
924043 ACTTTT
131 ACTTCT
* * * *
924049 TCTCCCTCTGTTGGATGAGCTCTTCTCATTATGAACTCTCCATTTGAAATATTAAT-ACCTCAAG
1 TCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCTATTTGAAAGATTAATCA-CTCAAG
* * * * * *
924113 CGAGGTGTCACTAATTTGAAATGACGTGACTCGAGTGATAGGTCGAACAAGCTCTTCTTATTATG
65 CAAGGCGTCACTAATTCGAAATGACGTGAATCGAGCGATAGGTCGAACAAGCTCTTCTCATTATG
924178 AACTTCT
130 AACTTCT
* *
924185 TCTCCCTTTATCGGATGAGTTCTTCTCATTATGAACTC
1 TCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTC
924223 GAGTGATAGG
Statistics
Matches: 376, Mismatches: 67, Indels: 6
0.84 0.15 0.01
Matches are distributed among these distances:
135 1 0.00
136 375 1.00
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (136 bp):
TCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCTATTTGAAAGATTAATCACTCAAGC
AAGGCGTCACTAATTCGAAATGACGTGAATCGAGCGATAGGTCGAACAAGCTCTTCTCATTATGA
ACTTCT
Found at i:924044 original size:272 final size:269
Alignment explanation
Indices: 923536--924221 Score: 814
Period size: 272 Copynumber: 2.6 Consensus size: 269
923526 GTTTTCAACA
* * * * * *
923536 TTCTCATTATGAACTCTCTATTTGAAAGGATAATCCCTCAAGCGAAGGATCGCTGATTCGAAATA
1 TTCTCATTATGAACTCTCTATTTGAAAGGTTAATCACTCAAG-AAAGGGTCACTAATTCGAAATA
* *
923601 TCGTGAATTGAGTGATAGGTCGAACAAGCTC-TTC-TCATT-A-----TCTCCCTCTGTCGGATG
65 -CGTGAATCGAGTGATAGGTCGAACAAGCTCTTTCATTATTAACTTCTTCTCCCTCTGTCGGATG
*
923658 AGTTCTTCTCATTATGAACTTTCAATTTGAAAGATTAATCCCTCAAGCAAGGTATCACTGATTCG
129 AGTTCTTCTCATTATGAACTTTCAATTTGAAAGATTAATCCCTCAAGCAAGGCATCACTGATTCG
* * * * * *
923723 GAATGACGTGACTCGAGTAATAGGTCGAGCAAGCTATTCTCAATATGAACTTCTTCTCCCTCGGT
194 AAATGACGTGAATCGAGCAATAAGTCGAACAAACTATTCTCAATATGAACTTCTTCTCCCTCGGT
* *
923788 TGGATGAGTTG
259 TGGATGAGCTC
*
923799 TTCTCATTATGAACTCTCTATTTGAAAGGTTAATCACTCAAGAAAGGCGTCACTAATTCAAAATA
1 TTCTCATTATGAACTCTCTATTTGAAAGGTTAATCACTCAAGAAAGG-GTCACTAATTCGAAATA
* ** *
923864 CCGTGAATCGAGCGATAGGTTTAACAAGCTCTTATCATTATTAACTTCTTCTCCCACTGTCGGAT
65 -CGTGAATCGAGTGATAGGTCGAACAAGCTCTT-TCATTATTAACTTCTTCTCCCTCTGTCGGAT
* * * * * *
923929 GAGTTCTTCTCATTATGAACTTTCTATTTGAAAGGTTAATCCCTCAAGCGAGGCGTCGCTTATTC
128 GAGTTCTTCTCATTATGAACTTTCAATTTGAAAGATTAATCCCTCAAGCAAGGCATCACTGATTC
* * * * * * *
923994 GAAATGTCGTGAATTGAGCGATAAGTCGAACAAACTCTTCTCATTATGAACTTTTTCTCCCTCTG
193 GAAATGACGTGAATCGAGCAATAAGTCGAACAAACTATTCTCAATATGAACTTCTTCTCCCTCGG
924059 TTGGATGAGCTC
258 TTGGATGAGCTC
* ** ** *
924071 TTCTCATTATGAACTCTCCATTTGAAATATTAAT-ACCTCAAGCGAGGTGTCACTAATTTGAAAT
1 TTCTCATTATGAACTCTCTATTTGAAAGGTTAATCA-CTCAAGAAAGG-GTCACTAATTCGAAAT
* * * * *
924135 GACGTGACTCGAGTGATAGGTCGAACAAGCTCTTCTTATTATGAACTTCTTCTCCCTTTATCGGA
64 -ACGTGAATCGAGTGATAGGTCGAACAAGCTCTT-TCATTATTAACTTCTTCTCCCTCTGTCGGA
924200 TGAGTTCTTCTCATTATGAACT
127 TGAGTTCTTCTCATTATGAACT
924222 CGAGTGATAG
Statistics
Matches: 357, Mismatches: 54, Indels: 15
0.84 0.13 0.04
Matches are distributed among these distances:
262 4 0.01
263 79 0.22
264 1 0.00
265 2 0.01
266 4 0.01
267 1 0.00
271 1 0.00
272 264 0.74
273 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (269 bp):
TTCTCATTATGAACTCTCTATTTGAAAGGTTAATCACTCAAGAAAGGGTCACTAATTCGAAATAC
GTGAATCGAGTGATAGGTCGAACAAGCTCTTTCATTATTAACTTCTTCTCCCTCTGTCGGATGAG
TTCTTCTCATTATGAACTTTCAATTTGAAAGATTAATCCCTCAAGCAAGGCATCACTGATTCGAA
ATGACGTGAATCGAGCAATAAGTCGAACAAACTATTCTCAATATGAACTTCTTCTCCCTCGGTTG
GATGAGCTC
Found at i:924405 original size:215 final size:215
Alignment explanation
Indices: 924034--924437 Score: 542
Period size: 215 Copynumber: 1.9 Consensus size: 215
924024 CAAACTCTTC
* * * *
924034 TCATTATGAACTTTTTCTCCCTCTGTTGGATGAGCTCTTCTCATTATGAACTCTCCATTTGAAAT
1 TCATTATGAACTTATTCTCCCTCAGTCGGAAGAGCTCTTCTCATTATGAACTCTCCATTTGAAAT
** * * * *
924099 ATTAATACCTCAAGCGAGGTGTCACTAATTTGAAATGACGTGACTCGAGTGATAGGTCGAACAAG
66 ATTAATACCTCAAGCGAGGCATCACTAATTCGAAATGACATGAATCGAGTGATAGCTCGAACAAG
* * *
924164 CTCTTCTTATTATGAACTTCTTCTCCCTTTATCGGATGAGTTCTTCTCATTATGAACTCGAGTGA
131 CTCTTCTCATTAGGAACTTCTTCTCCCTCTATCGGATGAGTTCTTCTCATTATGAACTCGAGTGA
924229 TAGGTCAAACATGATTAATT
196 TAGGTCAAACATGATTAATT
* * * * * *
924249 TCATTATGAACTTATTCTCCTTCAGTCGGAAGAGTTCTTCTCATTTTTAACTCTCCTTTTGAACT
1 TCATTATGAACTTATTCTCCCTCAGTCGGAAGAGCTCTTCTCATTATGAACTCTCCATTTGAAAT
* * * **
924314 ATTAAT-CACTCAAGTGAGGCATCATTGATTCGAAATGTTATGAATCGAGTGATATGCT-GAACA
66 ATTAATAC-CTCAAGCGAGGCATCACTAATTCGAAATGACATGAATCGAGTGATA-GCTCGAACA
* *
924377 AGCTCTTCTCATTAGGAACTTCTTCTCCCTCTGTCGTATGAGTTCTTCTCATTATGAACTC
129 AGCTCTTCTCATTAGGAACTTCTTCTCCCTCTATCGGATGAGTTCTTCTCATTATGAACTC
924438 TCTATTTGAA
Statistics
Matches: 161, Mismatches: 26, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
214 1 0.01
215 158 0.98
216 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.38
Consensus pattern (215 bp):
TCATTATGAACTTATTCTCCCTCAGTCGGAAGAGCTCTTCTCATTATGAACTCTCCATTTGAAAT
ATTAATACCTCAAGCGAGGCATCACTAATTCGAAATGACATGAATCGAGTGATAGCTCGAACAAG
CTCTTCTCATTAGGAACTTCTTCTCCCTCTATCGGATGAGTTCTTCTCATTATGAACTCGAGTGA
TAGGTCAAACATGATTAATT
Found at i:924494 original size:136 final size:136
Alignment explanation
Indices: 924249--936029 Score: 10849
Period size: 136 Copynumber: 87.5 Consensus size: 136
924239 ATGATTAATT
* * * * * * * *
924249 TCATTATGAACTTATTCTCCTTCAGTCGGAAGAGTTCTTCTCATTTTTAACTCTCCTTTTGAACT
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAA-A
* * * * ** *
924314 A-TTAATCACTCAAGTGAGGCATCATTGATTCGAAATGTTATGAATCGAGTGATATG-CTGAACA
65 AGTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTC-GAACA
924377 AGCTCTTC
129 AGCTCTTC
* * *
924385 TCATTAGGAACTTCTTCTCCCTCTGTCGTATGAGTTCTTCTCATTATGAACTCTCTATTTGAAAA
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* * ** * *
924450 GATAATCCCTCAAGCGAGGCATTGCTGATTCGAAATGTCGTGAATTGAGTAATAGGTCGAACAAG
66 GTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACAAG
*
924515 GTCTTC
131 CTCTTC
* * *
924521 TCA-T-T--A-----TCTCCCTCTCTCGGATGAGTTCTTCTCATTATGAACTCTTCATTTG-AAT
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* * * * * *
924576 GATTAATCCCTCAAGTGAGGTGTCACTGATTCAAAATGACGTGACTCGAGT-AGTAGATCGAACA
66 G-TTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGA-TAGGTCGAACA
*
924640 AGCTATTC
129 AGCTCTTC
* * * *
924648 TCATTATGAACTTCTTCTCCCTCTGTTGTATGAGTTGTTCTCATTATGAACTCTCCATTTGAAAG
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* * * ** * * ** *
924713 GTTAATCGCTCAAGC-ATGGCATCACTGATTTGAAATACCATGAATCGAGCGATAGGTTTAATAA
66 GTTAATCCCTCAAGCGA-GGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACAA
*
924777 GCTCTTA
130 GCTCTTC
* *
924784 TCATTATTAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGGACTCTCCATTTG-AAA
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* * * * *
924848 GATTAATACCTCATGCGAGGTGTCACTGATTCAAAATGAT-GTGACTCGAGTGATAGGTCGAACA
66 G-TTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATG-TCGTGAATCGAGTGATAGGTCGAACA
924912 AGCTCTTC
129 AGCTCTTC
*
924920 TTATTATGAACTTCTTCTCCCAT-TGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAA
1 TCATTATGAACTTCTTCTCCC-TCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAA
* * * * * * * * *
924984 TGTTAATCCTTCAAGCGAGGCGTCACTAATTTGAAATGTCGTGAATCAAGCGATAAGTTGAATAA
65 AGTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACAA
925049 GCTCTTC
130 GCTCTTC
*** * * * *
925056 TCATTATGAACTTCTTCTCCCTCTAAAGGATGAGTACTTCTTAATATGAACTCTCAATTT-AAAA
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* * *
925120 TGTTAATCCCTAAAGCGAGGCGTCACTGATTCGAAATATCGTGAATCGAGTGATAGGTCAAACAA
66 -GTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACAA
* * *
925185 GATTTTTT
130 G-CTCTTC
** * * * *
925193 TCATTATGAACTAATTCTCCCTCAGTCGGATGAGTTCTTCTCATTTTGATCTCTCCATTTGAACT
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAA-A
* * * * * *
925258 A-TTAATCCCTCAAGTGAGGCGTCACTGATTCAAAATATTGTGAATCGTGTGATAGGTTGAACAA
65 AGTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACAA
925322 GCTCTTC
130 GCTCTTC
* * * *
925329 TCATTAGGAA---C-T-T--CTCTATCGGATGAGTTCTTCTCATTATGAACTCTCTATTT-ATGA
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGA-AA
* * * * * * * **
925386 GGATAATCCCTCAAGTGAGGCATCGCTGATTCGAAATGTCATGAATTGAGCAATAGGTCGAACAA
65 AGTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACAA
*
925451 GGTC-T-
130 GCTCTTC
* * * *
925456 TC--T-T--A-TT-ATCTCCCACTGTCGGATGAGTTCTTCTCATTTTGAACTCTTCATTTG-AAA
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
** * * *
925513 GATTAATCATTCAAGCGAGGTGTCACTGATTCGAAATGACGTGACTCGAGT-AGTAGGTCGAACA
66 G-TTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGA-TAGGTCGAACA
*
925577 AGCTGTTC
129 AGCTCTTC
* * * *
925585 TCATTATGAACATCTTCTCCCTCTGTTGGATGAGTTGTTCTCATTATGAACTCTCCATTTGAAAG
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* * * * ** * * **
925650 GTTAATCGCTCAAGCAAGGCATCATTGATTCGAAATACCGTGAATCAAGCGATAGGTTTAACAAG
66 GTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACAAG
*
925715 CTCTTA
131 CTCTTC
* * * *
925721 TCATTATTAACTTCTTCTCCCTCTATCGGATGAGTTCTTCTCATTATGGACTCTCCAATTGAAAT
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAA-
* * * * * * *
925786 A-TTAATACCTCATGCGAGGTGTCTCTGATTCGAAATGACGTGACTCGAGTGATAGGTTGAACAA
65 AGTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACAA
925850 GCTCTTC
130 GCTCTTC
* * *
925857 TTATTATGAACTTCTTCTCCCTTTGTCGGATGAGTTCTTCTCATTATGAACTCTCAATTT-AAAA
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* * * * * * * *
925921 TGTTAATCCCTAAAGTGAGGTGTCACTGATTCAAAATATCGTGGATCGAGTCATAGGTCAAACAA
66 -GTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACAA
* * *
925986 GATTATTT
130 G-CTCTTC
* * * * *
925994 TCATTATGAACTTATTCTCCCTCAT-TCGGATAAGTTCTTCTCATTTTGAACTTTCTATTTGAAC
1 TCATTATGAACTTCTTCTCCCTC-TGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAA-
* * * * **
926058 TA-TTAATCCCTCAAGTGAGGCGTCACCGATTCAAAATGTTTTGAATCGAGTGATAGG-CTGAAC
64 AAGTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTC-GAAC
926121 AAGCTCTTC
128 AAGCTCTTC
* * * * *
926130 TCATTAGGAACTTCTTCTCCATCTGTCGGATGAGTTCTTCTCATTCTGAACTCTCTATTTGAAAG
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* * * * * ** *
926195 GATAATCCCTCAAGCGAGGCATCGCTGATTCGAAATGTCCTGAATTGAGCAATAGGTGGAACAAG
66 GTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACAAG
*
926260 GTC-T-
131 CTCTTC
* *
926264 TC--T-T--A-TT-ATCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTTCATTTG-AAA
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* * * * * * *
926321 GATTAATCCCTCAAGCGAGGTGTAAATGATTTGAAATATCGTGACTCGAGT-AGTAGGTCGAATA
66 G-TTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGA-TAGGTCGAACA
* *
926385 AGTTGTTC
129 AGCTCTTC
* * * *
926393 TCATTATGAACATCTTCTCCCTCTGTTGGATGAGTTGTTCTCATTATGAACTCTCCATTTGAAAG
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* * * * * ** * ** *
926458 GTTAAACGCTCAAGCAAGGCATCACTGATTTGAAATACCGTGAATCGAGCGATAGGTTTAATAAG
66 GTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACAAG
*
926523 CTCTTA
131 CTCTTC
* * * *
926529 TCATTATTAACTTCTTCTCCCTCTATCGGATGAGTTCTTCTCATTATGAACTCTCAATTTGAAAT
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* * * * * * * * *
926594 GATAATCCCTAAAGTGAGGCATCACTGA-TCCAAATTATCTTGAATCGAGTGATAGGTCAAACAT
66 GTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAA-TGTCGTGAATCGAGTGATAGGTCGAACAA
* * *
926658 GATTTTTT
130 G-CTCTTC
** * *
926666 TCATTATGAACTAATTCTCCCTCAGTCGGATGAGTTCTTCTCATTTTGAA-----C---T----A
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* * *
926719 -TTAATCCCTCAAGTGAGGCGTCACTGATTCGAAATGTTGTGAATCGAGTGATAGGTTGAACAAG
66 GTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACAAG
926783 CTCTTC
131 CTCTTC
* * * * * *
926789 TCATTAGGAACTTCTTCTCCCTCCGTTGGATGTGTTCTTCTCATTATGAACTCTCTATTTGAAAG
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* * * * * * * * * *
926854 GATAATCCCTCAAGTGAGGCATCGCTAATTC-ACAATGTCATGTATTGAGCGATAGGTCGAATAA
66 GTTAATCCCTCAAGCGAGGCGTCACTGATTCGA-AATGTCGTGAATCGAGTGATAGGTCGAACAA
926918 GCTCTTC
130 GCTCTTC
*
926925 TCA-T-T--A-----TCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTTCATTTG-AAA
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* * * * * *
926980 GATTAATCCCTCAAGCGAGGTGTCAATGATTTGAAATGACGTGACTCGAGT-AGTAGGTCAAACA
66 G-TTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGA-TAGGTCGAACA
* *
927044 AGTTGTTC
129 AGCTCTTC
* * * * *
927052 TCATTATGAACATCTTCTCCCTCTGTTGGATGAGTTGTTCTCATTATGAACACTCCATTTGAAAG
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* * * * * * **
927117 GTTAAAT-GCTCAAGCAAGGCATCACTGATTTGAAAT-ACAGTGAATCGAGCGATAGGTTTAACA
66 GTT-AATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTC-GTGAATCGAGTGATAGGTCGAACA
*
927180 AGCTCTTA
129 AGCTCTTC
* * * * *
927188 TCATTATTAACTTCTTCTCCCTCTATCGGATGAGTTCTTCTTATTATGAACTCTCAATTTGAAAT
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* * * * * * * * *
927253 GTTAATCCCTAAAGTGAGGCATCAGTGATTCGAATTATCGTGAATCGAGTGATAGTTCAAACATG
66 GTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACAAG
* * *
927318 ATTTTTT
131 -CTCTTC
* * * *
927325 TCATTATGAACTTATTCTCCCTCAGTCGGATGAGTTCTTTTCATTCTGAA-----C---T----A
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* * *
927378 -TTAATCCCTCAAGCGAGGCGTCACTGATACGAAATGTTGTGAATCGAGTGATAGGTTGAACAAG
66 GTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACAAG
927442 CTCTTC
131 CTCTTC
* * * * * *
927448 TCATTAGGAACTTGTTCTCCCTCCGTTGGATGAGTTCTTCTCATTATGAACTCTCTATTTGAAAG
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* * * * * ** *
927513 GATAATCCCTCAAGCGAGGCATCGCTGATTCGCAATGTCGTGAATTGAACGATAGGTCGAATAAG
66 GTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACAAG
*
927578 ATCTTC
131 CTCTTC
* * *
927584 TC---AT--A-----TCTCCCTCTGTCGGATAAGTTCTTCTCATTTTGAACTCTTCATTTG-AAA
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* * * * * * * *
927638 GATTAATCCCTCGAGCGAGGTGTCACTGATTTGAATTGACGTGACTCGAGTAATAGGTCTAACAA
66 G-TTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACAA
*
927703 GCTATTC
130 GCTCTTC
* * * * *
927710 TCATTATGAACTTATTCTCCCTCTGTTGGATGAGTTGTTTTCATTATGAACTCTCTATTTG-AAA
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* * * * * ** * * * **
927774 GATTAATCGCTTAAGCAAGGCGTCACTAATTCAAAATACCTTGAATCGAGCGATATGTTTAACAA
66 G-TTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACAA
* *
927839 GTTCTTA
130 GCTCTTC
* * * * *
927846 TCATTATTAACTTCTTCTCCCTCTGTCGAATGAGTTCTTCTCATTATTAACTCTCTATTTGAAAG
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* * * * * * **
927911 GTTAATCCCTCAAGCGAGGCGACGCTGATTCGAAATGACGTGAATTGAGCGGTAGGTCGAATGAG
66 GTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACAAG
927976 CTCTTC
131 CTCTTC
* * *
927982 TCATTATGAACTTTTTCTCCCTCTATCGGATGAGTTCTTTTCATTATGAACTCTCCATTTG-AAA
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* * * * * *
928046 GATTAATACCTCAAGCAAGGTGTCACTGATTTGAAATGACTTGAATCGAGTGATAGGTCGAACAA
66 G-TTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACAA
928111 GCTCTTC
130 GCTCTTC
* * * * *
928118 TTATTATAAACTTCTTCTCCCTCTGTCGGATGAGTTGTTCTCATTATGAACTCTCCATTTTAAAG
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* * * * * * *
928183 GTTAATCCCTAAAGTGAGGCATCGCTGATTCAAAATGTCATGAATCGAGCGATAGGTCGAACAAG
66 GTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACAAG
928248 CTCTTC
131 CTCTTC
* * * *
928254 TTATTATGAACTTCTTCTCCCTTTGTCGGATGAGTTCTTCTCATTATGAACTCTCCACTTGAAAT
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* * * * *
928319 GTTAATCCCTCAGGTGAGGCGTCACTGATTCAAAATGTCATGAATCGAGCGATAGGTCGAACAAG
66 GTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACAAG
928384 CTCTTC
131 CTCTTC
* *** * * * *
928390 TCAGTATGAACTTCTTCTCCCTCTAAAGCATGTGTTCTTCTCATTATGAACTCTCTATTTGAAAT
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* * * * * * * * *
928455 CTTAATCCTTAAATCTAGGCATCATTGAATT-GAAATATCGTGAATTGAGTGATAGGTCGAACAA
66 GTTAATCCCTCAAGCGAGGCGTCACTG-ATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACAA
* *
928519 GATTTTC
130 GCTCTTC
* * *
928526 TGATTATGAACTTCTTTTCCCTCAGTCGGATGAGTTCTTCTCAATT-TGAACTCTCCATTTGAAA
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTC-ATTATGAACTCTCCATTTGAAA
* * * * * *
928590 TA-TTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATTTCATGAATTGAGCGATAGTTTGAACA
65 -AGTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACA
928654 AGCTCTTC
129 AGCTCTTC
* * * * * *
928662 TCATTAGGAACTTCTTCTCCCTCTATC-GATGAATTCTTCTCATTATGAACACTCTATTTGAAAG
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* * * * * * * * * *
928726 GATAATCCATAAAGCGAGGCATCGCTGATTCCAAGTGTCATGAATTGAGCGATAGGTCGAACAAG
66 GTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACAAG
928791 CTCTTC
131 CTCTTC
* * * *
928797 TCATTATGAAGTTTTTCTCCCTCTCTCGGATGAGTTCTTCACATTATGAACTCTCCATTTG-AAA
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* * * * * * *
928861 GATTAATCCCTTAAGCGAGGTGTCACTGATGCAAAAT-TACATGACTCGAGTGATAGGTAGAACA
66 G-TTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGT-CGTGAATCGAGTGATAGGTCGAACA
*
928925 AGCTATTC
129 AGCTCTTC
* * * * * *
928933 TCATTACGAACTTCTTCTCCCTCTGTCGGATGAGTTGTTCTTATTATGAACTTTCTATTTGAAAG
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
** * ** * ** *
928998 GTTAATCCCTCAAGAAAGGCGTCGCTGATTCGAAATACCATGAATCGAGTGATAGGTTTAACATG
66 GTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACAAG
929063 CTCTTC
131 CTCTTC
* * * *
929069 TCGTTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAGCTCTCTATTTG-AAG
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* * * * ** * * **
929133 GTTAATCCCTCAAGCAAGGTGTCGCTGATTTGAAATACCGTGAATTGAGCGATAGGTTAAACAAG
66 GTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACAAG
*
929198 TTCTTC
131 CTCTTC
* * * *
929204 TCATTATGAACTTCTTATCCCTGTGTCGGATGAGTTCCTCTCATTATGAACTATCCATTT-AAAA
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* * *
929268 GGTTAATCCCTCAAGCAAGGCGTCACTGATACGAAATGTCGTGAATCGAGTGATAGGTCAAACAA
66 -GTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACAA
929333 GCTCTTC
130 GCTCTTC
* * * * ** *
929340 TTATTATGAACTTCTTCTCCATTTTTTAGATGAGTTCTTCTAATTATGAACTCTCCATTTGAAAT
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAA-
* * * * **
929405 A-TTAATCCCTCAAACGAGGCGTTACTGATTCAAAATGTCATGAATCGAGCCATAGGTCGAACAA
65 AGTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACAA
929469 GCTCTTC
130 GCTCTTC
* * * *** * *
929476 TCATTATAAAGTTTTTCTCCCTCTAAAGAATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAT
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* * * * *
929541 GTTAATCCCTAAAGTGAGGCATCACTGATTCGAAATATCGTGAATCG-GATGATAGGTCGAATAA
66 GTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAG-TGATAGGTCGAACAA
*
929605 GCTTTTC
130 GCTCTTC
* *
929612 GT-ATTATGAA-TATCTTCTCCCTCAGTCGGATGAGTTCTTCTCATTTTGAACTCTCCATTTGAA
1 -TCATTATGAACT-TCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAA
** * * * * * *
929675 ATA-TTAATCCCTCAAAAGAGGCTTTACTGATTCGAAATGTCCTGAATTGAGCGATAGGTTGAAC
64 A-AGTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAAC
*
929739 AAGATCTTC
128 AAGCTCTTC
* * ** *
929748 TAATTAGGAACTTCTTCTCCCTCAATCGGATGAGTTCTTCTCATTTTGAACTCTCCATTTGAAAT
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAA-
** * * * * *
929813 A-TTAATCCCTCAAAAGAGGCTTTACTGATTCGAAATGTCATGAATTGAGCGATAGGTCGAACAA
65 AGTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACAA
* *
929877 GATGTTC
130 GCTCTTC
* *
929884 TCATTATGAACTTTTTCTCCCTCTGTCAGATGAGTTCTTCTCATTATGAACTCTCCATTTG-AAA
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* * * * *
929948 GATTAATCCCTCAAGCGAGGTGTCACTGATTCAAAATGACCTGACTCGAGT-ATTAGGTCGAACA
66 G-TTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGA-TAGGTCGAACA
*
930012 ATCTCTTC
129 AGCTCTTC
* * * *
930020 TCATAATGAACTTCTTCCCCCTCTGTCGGATGAGTTCTTCTCATTATAAACTCTCCATTTGAAAG
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* * ** * ** * * *
930085 GTTAATCCCTCAAACAAGGAATCGCTGATTCGAAATACCGTGAATCGAGCGATAGGAT-TAACAG
66 GTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGG-TCGAACAA
930149 GCTCTTC
130 GCTCTTC
* * * *
930156 TCATTATGAACTTCTTCTCCCTCTATCCGATGAGTTTTTCTCATTATGAACTATCCATTT-AAAT
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAA-
* *
930220 GGTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCAAGTGATAGGTCGAACAA
65 AGTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACAA
930285 GCTCTTC
130 GCTCTTC
* * * * * * * *
930292 TTATTATGAACTTCTTCTCTCTTTTTCGGACGGGTTCTTCTCATTATAAACTCTCCATTTGAAAT
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* * * * *
930357 GTTAATCCCTCAAGCGAGGTGTCAGTGATTCAAAATGTCGTGAATCGAGCGATAGGTCGAAAAAG
66 GTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACAAG
*
930422 GTCTTC
131 CTCTTC
** *
930428 TCATTATGAACTTCTTCTCCCTCT-AAGGATTAGTTCTTCTCATTATGAACTCTCCATTTGAAAT
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAA-
* * * * * * * * *
930492 A-TTAATCCCT-AAGGTGAGGCGTCACTGATTCAAAATATAGTGAATTGAGTTATAGTTTGAATA
65 AGTTAATCCCTCAA-GCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACA
* *
930555 AGTTTTTC
129 AGCTCTTC
* * **
930563 TCATTAT-AATCTTCTTCTCCCAT-TGTCGGATGAGTTCTTCTCCTTTTGAACTCTGTATTT-AA
1 TCATTATGAA-CTTCTTCTCCC-TCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAA
* * * * * * * *
930625 AA-TAATAATCCCTTAAGCGAGGCATCACTAATTCGAAATATAGTAAATCGAGCGATAGGTTGAA
64 AAGT--TAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAA
930689 CAAGCTCTTC
127 CAAGCTCTTC
* * * * ** *
930699 TCATTAGGAACATCTTCTCCCTCTGTCGGAAGAGTTCTTCTCATTATGAGCTCTTTATTTGAAAG
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* * * * *
930764 GATT-ATCCCTCAAGTGAGGCGTCACTGATTCAAAATGTCATGAATTGAGTGATAGGTCGACCAA
66 G-TTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACAA
*
930828 TCTCTTC
130 GCTCTTC
* * * *
930835 TGATGATGAACTTTTTCTCCCTCTGTCGGATGAGTTCTTCACATTATGAACTCTCCATTTG-AAA
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* * * *
930899 GATTAATCCCTGAAGTGAGGTGTCACTGATTCGAAAT-TACGTGACTCGAGTGATAGGTCGAACA
66 G-TTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGT-CGTGAATCGAGTGATAGGTCGAACA
*
930963 AGCTCTTT
129 AGCTCTTC
* * * * * * *
930971 TCATTTTGAACTTCTTCTCCATCTGTAGGATGCGTTGTTCACCTTATGAACTCTCCATTT-AAAA
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* * * * ** * ** *
931035 GGTTAATCCCTCAACCAAAGCATCACTGATTCGAAATACCGTGAATTGAGCAATAGGTTGAACAA
66 -GTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACAA
931100 GCTCTTC
130 GCTCTTC
* * * *
931107 TCATTATGAACTTTTTCTCCCTCTGTCGGACGAGTTCTTATCATTATGAACTATCCATTT-AAAA
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* * * * * * * * *
931171 GGATAATCCATCAAGAGAGGCATCGCTGATTTGAAATGTCGTGAGTCGAGCGATAGGTTGAACAA
66 -GTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACAA
* *
931236 GCACTCC
130 GCTCTTC
* * * * *
931243 TCATTATGAATTTCTTCTCCCTCTGTCGAATGAGTTCTTCTTATTATGAACTATCCATTTGAAAG
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* * ** * * * * *
931308 GTTAATCCCTTAAGAGAGGTATCCCTGATT-TAAATTGTCATGAATCGA-TCAATAAGTCGAACA
66 GTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAA-TGTCGTGAATCGAGT-GATAGGTCGAACA
931371 AGCTCTTC
129 AGCTCTTC
* * * * * *
931379 TTATTATGATCTTCTTCTCCCTTTTTCGGATGAGTTCTTCTTATTATGAACTCTCCATTTGAAAT
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* * * *
931444 GTTAATCCCTCAAGCGTGGCGTCACTGATTCGAAATGTCTTTAATCGAGCGATAGGTCGAACAAG
66 GTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACAAG
931509 CTCTTC
131 CTCTTC
* * * * *** * * *
931515 TAACTATGAACTTTTTCTACCTCTAAAGGATGAGTTCTTCTCAATATGAACTCTCTATTTGAAAT
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* ** * * **
931580 GTTAATCCCTAAAATGAGGCGTCACTGATTCAAAATATCGTGAATCGAGTGATAGGTTAAACAAG
66 GTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACAAG
* *
931645 CTTTTT
131 CTCTTC
* * ** * * *
931651 TGCGTTATGAACGTCTTCTCCCTCAATCAGATGAGTTCTTCTCATTTTGAACTCTCCATTTCAAA
1 T-CATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAA
** * * * * * *
931716 TA-TTAATCCCTCAAAAGAGGCTTTACTGATTCAAAATGTCATGAATCGAGCGATAGGTTGAACA
65 -AGTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACA
*
931780 AGATCTTC
129 AGCTCTTC
* * *** *** ** **
931788 T-ATTTAGGAA-GTCGAATGAGTTCT-TCTCATTTTGAACTC-TC-CATT-TGAA------A--T
1 TCA-TTATGAACTTCTTCT-CCCTCTGTCGGA---TGAGTTCTTCTCATTATGAACTCTCCATTT
** * * * ** *
931839 ----A-TTAATCCCTCAAAAGAGGCTTTACTGATTCAAAATGTCGTGAATTAAGCGATAGGTCGA
61 GAAAAGTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGA
*
931899 ACAAGATCTTC
126 ACAAGCTCTTC
* * *
931910 TCATTATGAACTTCTTCTCCCTCTGTCCGATGAGTTATTCTCATTATGAACTATCCATTT-AAAT
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAA-
* * * * *
931974 GGTTAATCCCTCAAGCGAGGCGTCACTGATTTGAAATTTCATGAATCAAGTGATAGGTCGAACAA
65 AGTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACAA
*
932039 ACTCTTC
130 GCTCTTC
* * * * * * * *
932046 TTATTATGAACTTCTTATCCATTTTTCGGACGAGTTCTTCTCATTATGAACACTCCATTTGAAAT
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* * * *
932111 GTTAATCCCTCAAGCGAGGTGTCACTGATTTGAAATGTCGTGAATCGAGCGATAGGTCAAACAAG
66 GTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACAAG
*
932176 GTCTTC
131 CTCTTC
** * *
932182 TCATTATGAACTTCTTCTCCCTCT-AAGGATTAGTTCTTCTCATTATGAACTCTCCATTTGAAAT
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* * * * * * * *
932246 GTTAATCCCT-AAGGCGAGGCATCACTGATTTGAAATATCATGAATTGAGTGATAGTTTGAAGAA
66 GTTAATCCCTCAA-GCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACAA
* *
932310 GTTTTTC
130 GCTCTTC
* * * *
932317 TCATTATAAACTTCTTCTCCCTCAGTCGGATGAGTTCTTCTCATTTTGAACTCTGCATTT-AAAA
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* * * * * * * *
932381 -TAATAATCCCTCAAGTGAGACATCACTAATTCGAAATGACGTGAATCGAGCGATAGGTTGAATA
66 GT--TAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACA
932445 AGCTCTTC
129 AGCTCTTC
* * * * *
932453 TCATTAGGAACATCTTCTCCCTCTGTCGGAAGAGTTCTTCTCATTATGAACTCTCTATTTGAAAG
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* * * * *
932518 GATAATCCCTCAAGTGAGGCGTCACTGATTCAAAATGTCATGAATTGAGTGATAGGTCGAACAAG
66 GTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACAAG
*
932583 CTCTTA
131 CTCTTC
* * * * * *
932589 TGATTATAAACCTT-TTCTCCCTCTGTCAGATGAGTTGTTCACCTTATGAACTCTCCATTTGAAA
1 TCATTATGAA-CTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAA
* * * * * * **
932653 GGTTAATCCCTCAACCAAGGCGTCGCTGATTCGAAATATTGTGAATCGA-TCGATAGGTTTAACA
65 AGTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGT-GATAGGTCGAACA
932717 AGCTCTTC
129 AGCTCTTC
* * * *
932725 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATAAACTCTCCAATT-ATAG
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
** * * * * *
932789 GTTAATCCCTCAAGAAAGACGTCGA-TGATTTGAAAT-ACTGTGAATCGAGTAATAGGTTGAACA
66 GTTAATCCCTCAAGCGAGGCGTC-ACTGATTCGAAATGTC-GTGAATCGAGTGATAGGTCGAACA
932852 AGCTCTTC
129 AGCTCTTC
* * *
932860 TCATTATGAACTTCTTCTCCCTCTGTCGGACGAGTTCTTCTAATTATGAACTATCCATTT-AAAA
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* ** ** * *
932924 GGCTAATCCCTCAAGCGAGGAATCACTGATTTAAAATGTCGTGAATCGAGCGATAGGTTGAACAA
66 -GTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACAA
932989 GCTCTTC
130 GCTCTTC
* * *
932996 TCATTATGAACTTCTTCTCCCTCTATCGAATGAGTTCTTCTCATTATGAACTATCCATTT-AAAA
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* * * * * *
933060 GGTTAATCCCTCAAGCGAGGTGTCCCTGATTC-AAATTGTCATGAATTGAGCGATAAGTCGAACA
66 -GTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAA-TGTCGTGAATCGAGTGATAGGTCGAACA
933124 AGCTCTTC
129 AGCTCTTC
* * * * * * * * * *
933132 TTATTATGATCTTTTTCTCTCTTTTTAGGACT-AGTTCTTCTCATTCTAAACACTCCATTTGAAA
1 TCATTATGAACTTCTTCTCCCTCTGTCGGA-TGAGTTCTTCTCATTATGAACTCTCCATTTGAAA
* * * * *
933196 TGTTAATCCCTCAAGCGAGGTGTCATTGATTCAAAATGTCGTGAATCGAGTGATAGATCGAACAA
65 AGTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACAA
* *
933261 GGTCTTA
130 GCTCTTC
** * * *
933268 TCATTATGAACTTCTTCTCCCTCT-AAGGATTAGTTCTTCTCATTATGAATTCTCCATTTGAAAT
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* * * * * * * *
933332 GTTAATCCCT-AAGGCGAGGCATCACTGATTCAAAATATCATGAATTGAGTTATAGTTTGAACAA
66 GTTAATCCCTCAA-GCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACAA
* *
933396 GTTTTTC
130 GCTCTTC
* * ** * *
933403 TCATTATAAACTTCTTCTCCCT-TAGTCGGACGAGTTCTTCTTGTTTTGAACTCTGCATTT-AAA
1 TCATTATGAACTTCTTCTCCCTCT-GTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAA
* * * **
933466 A-TAATAATCCCTCAAGCGAGGCGTCACTAATTCGAAATGTCGTGAATCGAGCGATGGGTTAAAC
65 AGT--TAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAAC
933530 AAGCTCTTC
128 AAGCTCTTC
* * * * *
933539 TCATTAGGAACATCTTCTCCCTCTGTCGGAAGAGTTCTTCTCATTATGAACTCTCTATTTGAAAG
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* * * * * *
933604 GATAATCCCTCAAGTGAGGCGTCACTGATTCAAAATATCATGAAAT-GAGTGATAGGTCAAACAA
66 GTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTG-AATCGAGTGATAGGTCGAACAA
*
933668 GCTATTC
130 GCTCTTC
* * * * * *
933675 TGATTATAAACTTTTTCTCCATCTGTCGGATGAGTTCTTCACATTATGAACTCTCCATTTG-TAA
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* * * * * * * *
933739 GATTAATCCTTGAAGTGAGGTGTCAATGATTCGAAATGACGTGACTCGATTGATAGGTCGAACAA
66 G-TTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACAA
*
933804 GCTCTTT
130 GCTCTTC
* * * * * * *
933811 TCATTATGAACTTCTTCTCCCTCTATAGGATGCGTTGTTCACCTTATGAACTCTCCATTTGAAAG
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* ** * * * * * * * **
933876 GTTAAT-CCTGATTCGAAATGACGTGACTCGAGT-GATAGGTC--GAA-CAAGCT-CT-TTTC-A
66 GTTAATCCCTCAAGCG--A-GGCGTCACT-GATTCGAAATGTCGTGAATCGAG-TGATAGGTCGA
*
933933 TTATGAA-CTTCTTC
126 --A-CAAGC-TCTTC
* * * * * **
933947 TCCCTCTATAGGA-TGCGTTGTTCAC-CT-T---ATGAACTC-TC-CATT-TGAA------A---
1 T-CAT-TAT-GAACTTC-TT-CTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTT
* * * * * *
933994 G----GTTAATCCCTCAACCAAGGCATCACTGATTTGAAATATCATGAATCGA-TCGATAGGT-G
61 GAAAAGTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGT-GATAGGTCG
934053 TAACAAGCTCTTC
125 -AACAAGCTCTTC
* * * * * *
934066 TCGTTATGAACTTCTTCTCCCTCTATCGGATGAGTTCTTCTCATTATGAACTCTCTAATTG-TAG
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* ** * ** ** *
934130 GTTAATCCCTCAAGCAAGGCGTCGTTGATTCAAAATACCGTGAATCGAGCAATAGGTTGAACAAG
66 GTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACAAG
934195 CTCTTC
131 CTCTTC
* * * * *
934201 TCATTATGAACTTCTTCTCCTTTTATCGGACGAGTTCTTCTCATTATGAACTATCCATTT-AAAA
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* * * * ** * * *
934265 GGCTAATCCCTCAAGCGAGGCATCGCTTATTTAAAATGTCATGAATCGAGCGATAGGTTGAACAA
66 -GTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACAA
*
934330 ACTCTTC
130 GCTCTTC
* * * * *
934337 TCATTATGAACTTATTCTCCCTCTGTCGAATGAGTTCTTCTCGTTATGAACTATCCATTTGAAAG
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* * * * * *
934402 GTTAATCCCTCAAGCAAGGCGTCCCTGATTC-AAATTATCATGAATCGAGCGATAAGTCGAACAA
66 GTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAA-TGTCGTGAATCGAGTGATAGGTCGAACAA
*
934466 GTTCTTC
130 GCTCTTC
* * * * ** * *
934473 TTATTATGATCTTCTTCTCCCTTTATTTGATGAGTTCTTCTCATTTTGAACTCTCCATTTGAAAT
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* * * * *
934538 GTTAATCCCTCAAGCGAGGCGTCATTGATTCGAAATATCTTTAATCGAGCGATAGGTCGAACAAG
66 GTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACAAG
934603 CTCTTC
131 CTCTTC
* * *** * * *
934609 TCACTATGAACTTCTTCTACCTCTAAAGGATGAGTTATTCACATTATGAACTCTCCACTTGAAAT
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAA-
* ** * * * *
934674 A-TTAATCCCTAAAATGAGGCATCACTGATTCAAAATATCGTGAATCGAGTGATAGGTCGAAAAA
65 AGTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACAA
*
934738 GCTTTTC
130 GCTCTTC
* *
934745 TCATTATGAACTTCTTCTCCCTCAGTCGGATGAGTTCTTCTCATTTTGAACTCTCCATTTGAAAT
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAA-
* * * * * * * *
934810 A-TTAATCCTTCAAGCGAGGCATCATTGATTCGAAATATCGTGAGTCGAGCGTTAGGTTGAACAA
65 AGTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACAA
*
934874 GCTATTC
130 GCTCTTC
* * * * * *
934881 TCATTAAGAACGTATTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCTATTTCAAAG
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* * * * * * * * * * * *
934946 GATAATCCCTCGAGCGAGTCGTCCCTGATTCAAAATGTCATGACTTGAGCGACAGGTCGAAAAAA
66 GTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACAAG
935011 CTCTTC
131 CTCTTC
* **
935017 TCATTATGAAC--GTTCTCCCTCTGTCAAATGAGTTCTTCTCATTATGAACTCTCCATTTG-AAA
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* * * * *
935079 GATTAATCCCTCAAGC-AAGCTGTCACTGATTCAAAATGACGTGACTCGATTGATAGGTCGAACA
66 G-TTAATCCCTCAAGCGAGGC-GTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACA
935143 AGCTCTTC
129 AGCTCTTC
** * * * * *
935151 TTGTTATGAACTTCTTCTCCCTCTGTCAGATGATTTCTTTTCATTATGAACTCTCTATTTGAAAG
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* ** * * ** * * *
935216 GTTATTCCCTCAAGCGAGGCGTCGTTAATTCGAAATGTCATGAATCGAACGATATGTCAAACAAC
66 GTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACAAG
935281 CTCTTC
131 CTCTTC
* * * * *
935287 TCATTATGAACTTCTTCTCGCACTGTCGGATTAGTTATTCTCATTATGAACTCTCCATTTGAAAT
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* **
935352 GTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCATGAATCGAGCAATAGGTCGAACAAG
66 GTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACAAG
935417 CTCTTC
131 CTCTTC
* *** * * *
935423 TCATTATGATCTTCTTCTCCCTCTGAATGATGAGTTATTCTCATTATGAACTCTCTATTTGAAAT
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* * ** * * * ** * *
935488 TTTAATCCGTCAAGTAAGGCATCACTAACTT-AAAATACCGTGAATCGAGAGATAGGTCAAACAA
66 GTTAATCCCTCAAGCGAGGCGTCACTGA-TTCGAAATGTCGTGAATCGAGTGATAGGTCGAACAA
*
935552 GCTTTTC
130 GCTCTTC
* * * * * * ** * * *
935559 TAATCACGAATTTTTTCTCCCTCTATCAAATGAGTTCTTCCCATTCTGAACTCTCCATTTGAAAT
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* * ** ** *
935624 GTTAATCCCTCAAGCGAGGCCTCACTTATTTTAAATACCATGAATCGAGTGATAGGTCGAACAAG
66 GTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACAAG
935689 CTCTTC
131 CTCTTC
* * * *
935695 TCATTATCAACTTTTTCTCCCTCTGTCGGATGATTTCTTCTCATTATGAACTCTCCATTTGAAAT
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
* * ** *
935760 GTTAATCCCTCAAGCGAGGCGTCACTGATTCAAAATATTATGAATCGAGTGATAGGTCGAGCAAG
66 GTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACAAG
935825 CTCTTC
131 CTCTTC
* * * *
935831 TCATTATGAACTTCTTC-ACCTCTGTCGGATGAGTTATTCTCATTATAAACTCTCAATTTGAAAT
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAA-
* *
935895 A-TTAATCCCTCAAGCGAGGCGTCACTGATTCAAAAT-ACTGTGAATCGAGTGATAGGTCGAACA
65 AGTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTC-GTGAATCGAGTGATAGGTCGAACA
*
935958 AGTTCTTC
129 AGCTCTTC
* *
935966 TCATTATGAACTTCTTCTCCCTCTGTCGGATAAGTTATTCTCATTATGAACTCTCCATTTGAAA
1 TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAA
936030 TGTTGATCGG
Statistics
Matches: 9492, Mismatches: 1835, Indels: 636
0.79 0.15 0.05
Matches are distributed among these distances:
115 3 0.00
116 9 0.00
117 17 0.00
118 4 0.00
119 17 0.00
120 20 0.00
121 5 0.00
122 87 0.01
123 109 0.01
124 101 0.01
125 10 0.00
126 110 0.01
127 372 0.04
128 9 0.00
129 103 0.01
131 10 0.00
132 11 0.00
133 10 0.00
134 133 0.01
135 1024 0.11
136 6751 0.71
137 535 0.06
138 27 0.00
139 12 0.00
140 3 0.00
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.35
Consensus pattern (136 bp):
TCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAA
GTTAATCCCTCAAGCGAGGCGTCACTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACAAG
CTCTTC
Found at i:931901 original size:122 final size:122
Alignment explanation
Indices: 931681--931910 Score: 415
Period size: 122 Copynumber: 1.9 Consensus size: 122
931671 CCTCAATCAG
931681 ATGAGTTCTTCTCATTTTGAACTCTCCATTTCAAATATTAATCCCTCAAAAGAGGCTTTACTGAT
1 ATGAGTTCTTCTCATTTTGAACTCTCCATTTCAAATATTAATCCCTCAAAAGAGGCTTTACTGAT
* *
931746 TCAAAATGTCATGAATCGAGCGATAGGTTGAACAAGATCTTCTATTTAGGAAGTCGA
66 TCAAAATGTCATGAATCAAGCGATAGGTCGAACAAGATCTTCTATTTAGGAAGTCGA
*
931803 ATGAGTTCTTCTCATTTTGAACTCTCCATTTGAAATATTAATCCCTCAAAAGAGGCTTTACTGAT
1 ATGAGTTCTTCTCATTTTGAACTCTCCATTTCAAATATTAATCCCTCAAAAGAGGCTTTACTGAT
* *
931868 TCAAAATGTCGTGAATTAAGCGATAGGTCGAACAAGATCTTCT
66 TCAAAATGTCATGAATCAAGCGATAGGTCGAACAAGATCTTCT
931911 CATTATGAAC
Statistics
Matches: 103, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
122 103 1.00
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
Consensus pattern (122 bp):
ATGAGTTCTTCTCATTTTGAACTCTCCATTTCAAATATTAATCCCTCAAAAGAGGCTTTACTGAT
TCAAAATGTCATGAATCAAGCGATAGGTCGAACAAGATCTTCTATTTAGGAAGTCGA
Found at i:933976 original size:119 final size:119
Alignment explanation
Indices: 933765--934002 Score: 467
Period size: 119 Copynumber: 2.0 Consensus size: 119
933755 GAGGTGTCAA
*
933765 TGATTCGAAATGACGTGACTCGATTGATAGGTCGAACAAGCTCTTTTCATTATGAACTTCTTCTC
1 TGATTCGAAATGACGTGACTCGAGTGATAGGTCGAACAAGCTCTTTTCATTATGAACTTCTTCTC
933830 CCTCTATAGGATGCGTTGTTCACCTTATGAACTCTCCATTTGAAAGGTTAATCC
66 CCTCTATAGGATGCGTTGTTCACCTTATGAACTCTCCATTTGAAAGGTTAATCC
933884 TGATTCGAAATGACGTGACTCGAGTGATAGGTCGAACAAGCTCTTTTCATTATGAACTTCTTCTC
1 TGATTCGAAATGACGTGACTCGAGTGATAGGTCGAACAAGCTCTTTTCATTATGAACTTCTTCTC
933949 CCTCTATAGGATGCGTTGTTCACCTTATGAACTCTCCATTTGAAAGGTTAATCC
66 CCTCTATAGGATGCGTTGTTCACCTTATGAACTCTCCATTTGAAAGGTTAATCC
934003 CTCAACCAAG
Statistics
Matches: 118, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
119 118 1.00
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.35
Consensus pattern (119 bp):
TGATTCGAAATGACGTGACTCGAGTGATAGGTCGAACAAGCTCTTTTCATTATGAACTTCTTCTC
CCTCTATAGGATGCGTTGTTCACCTTATGAACTCTCCATTTGAAAGGTTAATCC
Found at i:938838 original size:20 final size:20
Alignment explanation
Indices: 938798--938854 Score: 78
Period size: 20 Copynumber: 2.8 Consensus size: 20
938788 AAACGAATTA
938798 AAAAATTAAAATAACAAATAGT
1 AAAAA-TAAAATAA-AAATAGT
*
938820 AAAAATAAAACAAAAATAGT
1 AAAAATAAAATAAAAATAGT
*
938840 AAAAACAAAATAAAA
1 AAAAATAAAATAAAA
938855 TAAACACAAG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
20 20 0.62
21 7 0.22
22 5 0.16
ACGTcount: A:0.75, C:0.05, G:0.04, T:0.16
Consensus pattern (20 bp):
AAAAATAAAATAAAAATAGT
Found at i:938985 original size:51 final size:50
Alignment explanation
Indices: 938890--938985 Score: 113
Period size: 51 Copynumber: 1.9 Consensus size: 50
938880 GCATAAAATA
** * *
938890 AAATAACAGTGGCTAAAATGCAATAAAATAAAAGTTAGTAGCTAAATCAG
1 AAATAACAGTGGCTAAAATAAAATAAAATAAAAATTAGAAGCTAAATCAG
* *
938940 AAATAAACAGTGGCTAAAGTAAAATAAATTAAAAATTA-AAGGCTAA
1 AAAT-AACAGTGGCTAAAATAAAATAAAATAAAAATTAGAA-GCTAA
938986 TTTGAAATAA
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
50 5 0.13
51 33 0.87
ACGTcount: A:0.55, C:0.08, G:0.15, T:0.22
Consensus pattern (50 bp):
AAATAACAGTGGCTAAAATAAAATAAAATAAAAATTAGAAGCTAAATCAG
Found at i:942335 original size:136 final size:136
Alignment explanation
Indices: 942059--942339 Score: 327
Period size: 136 Copynumber: 2.1 Consensus size: 136
942049 GAGGTGATGA
* * *
942059 TGATTCGAGGTGTTGTGAATCTAGCAATAGGTCGAACAAGTTCTTCTCATTATAAATGTCTTCCC
1 TGATTCGAAGTGTTATGAATCTAGCAATAGGTCGAACAAGTTATTCTCATTATAAATGTCTTCCC
* * * * ** *
942124 CCCTTTGTCTGATGAGTTCTTCTCATTATGAACTCTCCATCGAAATATTAATCCCTCCATTCATG
66 CCCATTGTCAGATGAGTTCTTCTCATTATGAACTATCCATCGAAAGATTAATCCCTCCAAGCAGG
* *
942189 CATTAT
131 CATCAC
*
942195 TGATTCGAAGTGTTATGAATCTAGCAATAGGTCGAACAAGTTATTCTCATTATGAACT-TCTT-C
1 TGATTCGAAGTGTTATGAATCTAGCAATAGGTCGAACAAGTTATTCTCATTAT-AAATGTCTTCC
* * * *
942258 TCCCATTGTCAGATGAGTTCTTCTCATTATGAACTAT-CATTTTGAAAGGTTAGTCCCT-CAAGC
65 CCCCATTGTCAGATGAGTTCTTCTCATTATGAACTATCCA--TCGAAAGATTAATCCCTCCAAGC
**
942321 GAGGTGTCAC
128 -AGGCATCAC
942331 TGATTCGAA
1 TGATTCGAA
942340 ATGTCGTTAA
Statistics
Matches: 122, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
134 2 0.02
135 37 0.30
136 80 0.66
137 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36
Consensus pattern (136 bp):
TGATTCGAAGTGTTATGAATCTAGCAATAGGTCGAACAAGTTATTCTCATTATAAATGTCTTCCC
CCCATTGTCAGATGAGTTCTTCTCATTATGAACTATCCATCGAAAGATTAATCCCTCCAAGCAGG
CATCAC
Found at i:942944 original size:136 final size:136
Alignment explanation
Indices: 942700--944306 Score: 1970
Period size: 136 Copynumber: 11.8 Consensus size: 136
942690 AACGGTGTCC
* * * * *
942700 CTGATTC-AATATGTCGTGAATCGAGCAATAAGTCGAACAAGCTCTTCTTATTATGATCTTCTTC
1 CTGATTCGAA-ATATCGTGAATCGAGCGATAGGTCGAACAAGCTCTTCTCATTATGAACTTCTTC
* * * * * *
942764 TCCCTTTGTCGAATGAGTTCTTCTTATTATGAACTCTCCATTTGAAATGTTTATCCCTAAACCGA
65 TCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAATGTTAATCCCTCAAGCGA
*
942829 GGCGTTA
130 GGCGTCA
* * *
942836 CTGATTCAAAATATCATGAATCGAGGGATAGGTCGAACAAGCTCTTCTCATTATGAACTTCTTCT
1 CTGATTCGAAATATCGTGAATCGAGCGATAGGTCGAACAAGCTCTTCTCATTATGAACTTCTTCT
* *** * * *
942901 CCTTCTAAAGGATGAGTTCTTTTCATTATGAACTCTCCATTTGAAATGTTAATCCCTAAAGTGAG
66 CCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAATGTTAATCCCTCAAGCGAG
*
942966 GCATCA
131 GCGTCA
* * *
942972 CTGATTCGAAATAACGTGAATCGAGTGATAGGTCGAACAAGCTTTTCTCATTATGAACTTCTTCT
1 CTGATTCGAAATATCGTGAATCGAGCGATAGGTCGAACAAGCTCTTCTCATTATGAACTTCTTCT
* * * * ** *
943037 CCCTCAGTCGGATGATTTCTT-TACATTTTGAACTCTCTATTTGAAAAATTAATCCCTCAAGCAA
66 CCCTCTGTCGGATGAGTTCTTCT-CATTATGAACTCTCCATTTGAAATGTTAATCCCTCAAGCGA
**
943101 GGCAACA
130 GGCGTCA
* ** * *
943108 CTAATTCGAAACGTCGTGAATCGAGCGATAGGTTGAACAAGCTCTTCTCATTAGGAACTTCTTCT
1 CTGATTCGAAATATCGTGAATCGAGCGATAGGTCGAACAAGCTCTTCTCATTATGAACTTCTTCT
* * * * * *
943173 CCCTCTGTTGGATGATTTCTTCTCAGTATGAACTCTCTATTTGAAAGGATAATCCCTCAAGCGAG
66 CCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAATGTTAATCCCTCAAGCGAG
*
943238 GCGTCG
131 GCGTCA
* * ** * *
943244 CTGATTCGAAATGTCATGAATTTAGCGATAGGTCGAACAAGCTCTTATCATTATGAACTTTTTCT
1 CTGATTCGAAATATCGTGAATCGAGCGATAGGTCGAACAAGCTCTTCTCATTATGAACTTCTTCT
* * *
943309 CCCTCTGTCAGACGAGTTCTTCTCATTATGAACTCTCCATATGAAA-GATTAATCCCTCAAGCGA
66 CCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAATG-TTAATCCCTCAAGCGA
*
943373 GGTGTCA
130 GGCGTCA
* * * *
943380 CTGA-TCGAAATATCTTAAATCAAGCGATAGTTCGAACAAGCTCTTCTCATTATGAACTTCTTCT
1 CTGATTCGAAATATCGTGAATCGAGCGATAGGTCGAACAAGCTCTTCTCATTATGAACTTCTTCT
*
943444 CCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAAGGTTAATCCCTCAAGCGAG
66 CCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAATGTTAATCCCTCAAGCGAG
* *
943509 GCATTA
131 GCGTCA
* * ** *
943515 CTGATTTGAAATATCCTGAATCGAGATATAGGTCAAACAAGCTCTTCTCATTATGAACTTCTTCT
1 CTGATTCGAAATATCGTGAATCGAGCGATAGGTCGAACAAGCTCTTCTCATTATGAACTTCTTCT
* * *
943580 CCCTCTGTCGGATGAGTTCTTTTCATTATGAACTCTCCATTTGAAATATTAATCCCTCAAGCAAG
66 CCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAATGTTAATCCCTCAAGCGAG
943645 GCGTCA
131 GCGTCA
* * *
943651 CTGATTCGAAATGTCGTGAATCGAGCGATAGGTCGAACAAACTCTTCTCATTTTGAACTTCTTCT
1 CTGATTCGAAATATCGTGAATCGAGCGATAGGTCGAACAAGCTCTTCTCATTATGAACTTCTTCT
*** * * *
943716 CCCTCTGAATGTTGAGTTCTTCTCATTATGAACTCTCTATTTGAAATGTTAATCCCTTAAGCGAG
66 CCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAATGTTAATCCCTCAAGCGAG
*
943781 GCATCA
131 GCGTCA
* * * * * * * * * * *
943787 CTAACTC-AAATTACCGTGAATCAAGTGATAGGTCAAACAATCTTTTCTAATTATGAATTTTTTC
1 CTGATTCGAAA-TATCGTGAATCGAGCGATAGGTCGAACAAGCTCTTCTCATTATGAACTTCTTC
* *
943851 TCCCTCTGTCGGATGAGTTCTTCTCATTCTGAACTCTCTATTTGAAATGTTAATCCCTCAAGCGA
65 TCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAATGTTAATCCCTCAAGCGA
*
943916 GGTGTCA
130 GGCGTCA
* * * * *
943923 CTTATTTGAAATGTCGTGAATCGAGTGATAGGTCGAACAAGCTCTTCTCATTATGAACTTTTTCT
1 CTGATTCGAAATATCGTGAATCGAGCGATAGGTCGAACAAGCTCTTCTCATTATGAACTTCTTCT
* * * *
943988 TCCTCTTTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAATGTTAATCCATCAAGCGAT
66 CCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAATGTTAATCCCTCAAGCGAG
*
944053 ACGTCA
131 GCGTCA
* * * * *
944059 CT-ATTTCAAAATA-CTGTGAATTGAGTGATAGGTCGAGCAAGCTCTTCTCATTATGAACTTCCT
1 CTGA-TTCGAAATATC-GTGAATCGAGCGATAGGTCGAACAAGCTCTTCTCATTATGAACTTCTT
* * * * * *
944122 CT-CCTCTTTCAGATGAGTTATTCTCATTATAAACTCTCCATTTGAAATATTAATCCCTCAAACG
64 CTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAATGTTAATCCCTCAAGCG
944186 AGGCGTCA
129 AGGCGTCA
* * * * * * * *
944194 CTAATTTGAAATACCATGAATCTAGTGATAGGTCGAACAAGTTCTTCTCATTATGAATTTCTTCT
1 CTGATTCGAAATATCGTGAATCGAGCGATAGGTCGAACAAGCTCTTCTCATTATGAACTTCTTCT
*
944259 CCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTTAAATG
66 CCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAATG
944307 ATGATCGGTT
Statistics
Matches: 1265, Mismatches: 193, Indels: 26
0.85 0.13 0.02
Matches are distributed among these distances:
135 240 0.19
136 1019 0.81
137 6 0.00
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.35
Consensus pattern (136 bp):
CTGATTCGAAATATCGTGAATCGAGCGATAGGTCGAACAAGCTCTTCTCATTATGAACTTCTTCT
CCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAATGTTAATCCCTCAAGCGAG
GCGTCA
Found at i:943519 original size:679 final size:674
Alignment explanation
Indices: 942074--944306 Score: 2299
Period size: 679 Copynumber: 3.3 Consensus size: 674
942064 CGAGGTGTTG
* * * * * * *
942074 TGAATCTAGCAATAGGTCGAACAAGTTCTTCTCATTAT-AAATGTCTTCCCCCCTTTGTCTGATG
1 TGAATCGAGCGATA-GTCGAACAAGCTCTTCTCATTATGAACT-TCTT-CTCCCTCTGTCGGATG
* * ** * * * *
942138 AGTTCTTCTCATTATGAACTCTCCA-TCGAAATATTAATCCCTCCATTC-ATGCATTATTGATTC
63 AGTTCTTCTCATTATGAACTCTCCATTTGAAATGTTAATCCCT-CAAACGAGGCGTTACTGATTT
* * * * * *
942201 GAAGTGTTATGAATCTAGCA-ATAGGTCGAACAAGTTATTCTCATTATGAACTTCTTCTCCCAT-
127 GAAATATCATGAATCGAG-AGATAGGTCGAACAAGCTCTTCTCATTATGAACTTCTTCTCCC-TC
* * * * * * * **
942264 TGTCAGATGAGTTCTTCTCATTATGAACTAT-CATTTTGAAAGGTTAGTCCCTCAAGCGAGGTGT
190 TGTCGGATGAGTTCTTTTCATTATGAACTCTCCA-TTTGAAATGTTAATCCCTAAAGCAAGGCAT
** * * * *
942328 CACTGATTCGAAATGTCGTTAATCGAGTGATAGGTCTTAA-AGAAGCTATTCTCA-T-T--A---
254 CACTGATTCGAAATAACGTGAATCGAGCGATAGGTC-GAACA-AA-CTCTTCTCATTATGAACTT
* * ** * * *
942385 --------T--G--GGACGAGTTCTTCTCATTATGAACACTCCT-TTTGAAATGTCAAACCCACA
316 CTTCTCCCTCAGAAGGATGAGTTCTTCTCATTATGAACTCT-CTATTTGAAAAATTAATCCCTCA
* * *** * * * * ** *
942437 AGCTATGTGTCACTGACTCAAAATACAGTG-CTCGAGTTATAGGTC-TACAAGCTCTTCTCATTA
380 AGCAAGGCAACACTAACTCAAAGTAC-GTGAATCAAGCGATAGGTCAAACAAGCTCTTCTCATTA
*
942500 TGAACTTCGTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCTATTTG-AAGGTTAAT
444 TGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCTATTTGAAAGGTTAAT
* * * ** * * *
942564 CCCTCAAGCAAGGCATCGCTGTTTCGAAATACCGTGAATCGAGTGATAGGTTGAACAAGTTTTTC
509 CCCTCAAGCGAGGCGTCGCTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACAAGCTCTTC
*
942629 TCATTATGAACTTATTCTCCCTCTGTCGAATGAGTTCTTCTCATTATGAACTAC-CC--------
574 TCATTATGAACTTTTTCTCCCTCTGTCG-ATGAGTTCTTCTCATTATGAACT-CTCCATTGAAAG
* * *
942685 A-T--T--TCAA-C--GGTGTCCCTGATTCAATATGTCG
637 ATTAATCCTCAAGCGAGGTGTCACTGATTCAA-ATATCT
* * * * *
942716 TGAATCGAGCAATAAGTCGAACAAGCTCTTCTTATTATGATCTTCTTCTCCCTTTGTCGAATGAG
1 TGAATCGAGCGAT-AGTCGAACAAGCTCTTCTCATTATGAACTTCTTCTCCCTCTGTCGGATGAG
* * **
942781 TTCTTCTTATTATGAACTCTCCATTTGAAATGTTTATCCCT-AAACCGAGGCGTTACTGATTCAA
65 TTCTTCTCATTATGAACTCTCCATTTGAAATGTTAATCCCTCAAA-CGAGGCGTTACTGATTTGA
* * ***
942845 AATATCATGAATCGAGGGATAGGTCGAACAAGCTCTTCTCATTATGAACTTCTTCTCCTTCTAAA
129 AATATCATGAATCGAGAGATAGGTCGAACAAGCTCTTCTCATTATGAACTTCTTCTCCCTCTGTC
**
942910 GGATGAGTTCTTTTCATTATGAACTCTCCATTTGAAATGTTAATCCCTAAAGTGAGGCATCACTG
194 GGATGAGTTCTTTTCATTATGAACTCTCCATTTGAAATGTTAATCCCTAAAGCAAGGCATCACTG
* * *
942975 ATTCGAAATAACGTGAATCGAGTGATAGGTCGAACAAGCTTTTCTCATTATGAACTTCTTCTCCC
259 ATTCGAAATAACGTGAATCGAGCGATAGGTCGAACAAACTCTTCTCATTATGAACTTCTTCTCCC
** * *
943040 TCAGTCGGATGATTTCTT-TACATTTTGAACTCTCTATTTGAAAAATTAATCCCTCAAGCAAGGC
324 TCAGAAGGATGAGTTCTTCT-CATTATGAACTCTCTATTTGAAAAATTAATCCCTCAAGCAAGGC
* * ** *
943104 AACACTAATTCGAAACGT-CGTGAATCGAGCGATAGGTTGAACAAGCTCTTCTCATTAGGAACTT
388 AACACTAACTC-AAA-GTACGTGAATCAAGCGATAGGTCAAACAAGCTCTTCTCATTATGAACTT
* * * *
943168 CTTCTCCCTCTGTTGGATGATTTCTTCTCAGTATGAACTCTCTATTTGAAAGGATAATCCCTCAA
451 CTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCTATTTGAAAGGTTAATCCCTCAA
* ** * *
943233 GCGAGGCGTCGCTGATTCGAAATGTCATGAATTTAGCGATAGGTCGAACAAGCTCTTATCATTAT
516 GCGAGGCGTCGCTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACAAGCTCTTCTCATTAT
*
943298 GAACTTTTTCTCCCTCTGTCAGACGAGTTCTTCTCATTATGAACTCTCCATATGAAAGATTAATC
581 GAACTTTTTCTCCCTCTGTC-GATGAGTTCTTCTCATTATGAACTCTCCAT-TGAAAGATTAAT-
943363 CCTCAAGCGAGGTGTCACTGA-TCGAAATATCT
643 CCTCAAGCGAGGTGTCACTGATTC-AAATATCT
* *
943395 TAAATCAAGCGATAGTTCGAACAAGCTCTTCTCATTATGAACTTCTTCTCCCTCTGTCGGATGAG
1 TGAATCGAGCGATAG-TCGAACAAGCTCTTCTCATTATGAACTTCTTCTCCCTCTGTCGGATGAG
* * *
943460 TTCTTCTCATTATGAACTCTCCATTTGAAAGGTTAATCCCTCAAGCGAGGCATTACTGATTTGAA
65 TTCTTCTCATTATGAACTCTCCATTTGAAATGTTAATCCCTCAAACGAGGCGTTACTGATTTGAA
* * *
943525 ATATCCTGAATCGAGATATAGGTCAAACAAGCTCTTCTCATTATGAACTTCTTCTCCCTCTGTCG
130 ATATCATGAATCGAGAGATAGGTCGAACAAGCTCTTCTCATTATGAACTTCTTCTCCCTCTGTCG
* * *
943590 GATGAGTTCTTTTCATTATGAACTCTCCATTTGAAATATTAATCCCTCAAGCAAGGCGTCACTGA
195 GATGAGTTCTTTTCATTATGAACTCTCCATTTGAAATGTTAATCCCTAAAGCAAGGCATCACTGA
** *
943655 TTCGAAATGTCGTGAATCGAGCGATAGGTCGAACAAACTCTTCTCATTTTGAACTTCTTCTCCCT
260 TTCGAAATAACGTGAATCGAGCGATAGGTCGAACAAACTCTTCTCATTATGAACTTCTTCTCCCT
* * * ** * * *
943720 CTGAATGTTGAGTTCTTCTCATTATGAACTCTCTATTTGAAATGTTAATCCCTTAAGCGAGGCAT
325 CAGAAGGATGAGTTCTTCTCATTATGAACTCTCTATTTGAAAAATTAATCCCTCAAGCAAGGCAA
* * * * * * *
943785 CACTAACTCAAATTACCGTGAATCAAGTGATAGGTCAAACAATCTTTTCTAATTATGAATTTTTT
390 CACTAACTCAAAGTA-CGTGAATCAAGCGATAGGTCAAACAAGCTCTTCTCATTATGAACTTCTT
* *
943850 CTCCCTCTGTCGGATGAGTTCTTCTCATTCTGAACTCTCTATTTGAAATGTTAATCCCTCAAGCG
454 CTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCTATTTGAAAGGTTAATCCCTCAAGCG
* * * *
943915 AGGTGTCACTTATTTGAAATGTCGTGAATCGAGTGATAGGTCGAACAAGCTCTTCTCATTATGAA
519 AGGCGTCGCTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACAAGCTCTTCTCATTATGAA
* *
943980 CTTTTTCTTCCTCTTTCGGATGAGTTCTTCTCATTATGAACTCTCCATTTGAAATG-TTAATCCA
584 CTTTTTCTCCCTCTGTC-GATGAGTTCTTCTCATTATGAACTCTCCA-TTGAAA-GATTAATCC-
***
944044 TCAAGCGATACGTCACT-ATTTCAAA-ATACT
645 TCAAGCGAGGTGTCACTGA-TTCAAATAT-CT
* * * * * *
944074 GTGAATTGAGTGATAGGTCGAGCAAGCTCTTCTCATTATGAACTTCCTCT-CCTCTTTCAGATGA
1 -TGAATCGAGCGATA-GTCGAACAAGCTCTTCTCATTATGAACTTCTTCTCCCTCTGTCGGATGA
* * * * *
944138 GTTATTCTCATTATAAACTCTCCATTTGAAATATTAATCCCTCAAACGAGGCGTCACTAATTTGA
64 GTTCTTCTCATTATGAACTCTCCATTTGAAATGTTAATCCCTCAAACGAGGCGTTACTGATTTGA
* * * * *
944203 AATACCATGAATCTAGTGATAGGTCGAACAAGTTCTTCTCATTATGAATTTCTTCTCCCTCTGTC
129 AATATCATGAATCGAGAGATAGGTCGAACAAGCTCTTCTCATTATGAACTTCTTCTCCCTCTGTC
* *
944268 GGATGAGTTCTTCTCATTATGAACTCTCCATTTTAAATG
194 GGATGAGTTCTTTTCATTATGAACTCTCCATTTGAAATG
944307 ATGATCGGTT
Statistics
Matches: 1326, Mismatches: 196, Indels: 101
0.82 0.12 0.06
Matches are distributed among these distances:
640 9 0.01
641 43 0.03
642 198 0.15
643 5 0.00
644 1 0.00
655 1 0.00
657 1 0.00
658 3 0.00
659 51 0.04
660 15 0.01
661 69 0.05
662 110 0.08
663 1 0.00
671 1 0.00
672 1 0.00
674 1 0.00
677 5 0.00
678 11 0.01
679 739 0.56
680 60 0.05
681 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.35
Consensus pattern (674 bp):
TGAATCGAGCGATAGTCGAACAAGCTCTTCTCATTATGAACTTCTTCTCCCTCTGTCGGATGAGT
TCTTCTCATTATGAACTCTCCATTTGAAATGTTAATCCCTCAAACGAGGCGTTACTGATTTGAAA
TATCATGAATCGAGAGATAGGTCGAACAAGCTCTTCTCATTATGAACTTCTTCTCCCTCTGTCGG
ATGAGTTCTTTTCATTATGAACTCTCCATTTGAAATGTTAATCCCTAAAGCAAGGCATCACTGAT
TCGAAATAACGTGAATCGAGCGATAGGTCGAACAAACTCTTCTCATTATGAACTTCTTCTCCCTC
AGAAGGATGAGTTCTTCTCATTATGAACTCTCTATTTGAAAAATTAATCCCTCAAGCAAGGCAAC
ACTAACTCAAAGTACGTGAATCAAGCGATAGGTCAAACAAGCTCTTCTCATTATGAACTTCTTCT
CCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCTATTTGAAAGGTTAATCCCTCAAGCGAG
GCGTCGCTGATTCGAAATGTCGTGAATCGAGTGATAGGTCGAACAAGCTCTTCTCATTATGAACT
TTTTCTCCCTCTGTCGATGAGTTCTTCTCATTATGAACTCTCCATTGAAAGATTAATCCTCAAGC
GAGGTGTCACTGATTCAAATATCT
Found at i:947088 original size:21 final size:21
Alignment explanation
Indices: 947038--947122 Score: 66
Period size: 21 Copynumber: 4.0 Consensus size: 21
947028 ATTTAAAACT
* *
947038 AAATCTAAAAATTTAAATTATA-
1 AAAT-TAAAAAATTAAAATA-AC
* *
947060 AAACTAAACAATTAATAA-AAC
1 AAATTAAAAAATTAA-AATAAC
947081 AAATTAAAAAATTAAAATAAC
1 AAATTAAAAAATTAAAATAAC
* *
947102 AAATAATAAAAATAAAAATAA
1 AAATTA-AAAAATTAAAATAA
947123 AACAAAAATA
Statistics
Matches: 51, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
20 3 0.06
21 31 0.61
22 17 0.33
ACGTcount: A:0.69, C:0.06, G:0.00, T:0.25
Consensus pattern (21 bp):
AAATTAAAAAATTAAAATAAC
Found at i:947119 original size:22 final size:21
Alignment explanation
Indices: 947078--947122 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 21
947068 CAATTAATAA
* *
947078 AACAAATTAAAAAATTAAAAT
1 AACAAATAAAAAAATAAAAAT
947099 AACAAATAATAAAAATAAAAAT
1 AACAAATAA-AAAAATAAAAAT
947121 AA
1 AA
947123 AACAAAAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 8 0.38
22 13 0.62
ACGTcount: A:0.76, C:0.04, G:0.00, T:0.20
Consensus pattern (21 bp):
AACAAATAAAAAAATAAAAAT
Found at i:947137 original size:26 final size:26
Alignment explanation
Indices: 947086--947149 Score: 76
Period size: 26 Copynumber: 2.5 Consensus size: 26
947076 AAAACAAATT
* *
947086 AAAAAATTAAAATAACAAATAATAAA
1 AAAAAAATAAAACAACAAATAATAAA
*
947112 AATAAAAATAAAACAA-AAATAGTAAA
1 AA-AAAAATAAAACAACAAATAATAAA
*
947138 AACAAAATAAAA
1 AAAAAAATAAAA
947150 TAAACACAAG
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
25 9 0.27
26 13 0.39
27 11 0.33
ACGTcount: A:0.78, C:0.05, G:0.02, T:0.16
Consensus pattern (26 bp):
AAAAAAATAAAACAACAAATAATAAA
Found at i:951901 original size:25 final size:25
Alignment explanation
Indices: 951855--951930 Score: 84
Period size: 25 Copynumber: 3.0 Consensus size: 25
951845 CTCGTATAAA
* * *
951855 TTGCACCGTAGTGCCACATAGAATT
1 TTGCACCGAAGTGCCGCGTAGAATT
*
951880 TTGCACCGAAGTGCCGCGTAGAAAT
1 TTGCACCGAAGTGCCGCGTAGAATT
951905 TTGTC-CCGAAG-GACCGCGTAGAATT
1 TTG-CACCGAAGTG-CCGCGTAGAATT
951930 T
1 T
951931 ATCTCGAAGG
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
24 1 0.02
25 42 0.95
26 1 0.02
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (25 bp):
TTGCACCGAAGTGCCGCGTAGAATT
Found at i:951938 original size:24 final size:25
Alignment explanation
Indices: 951885--951954 Score: 81
Period size: 24 Copynumber: 2.8 Consensus size: 25
951875 GAATTTTGCA
*
951885 CCGAAGTG-CCGCGTAGAAATTTGTC
1 CCGAAG-GACCGCGTAGAAATTTATC
951910 CCGAAGGACCGCGTAG-AATTTATC
1 CCGAAGGACCGCGTAGAAATTTATC
* * *
951934 TCGAAGGACCACATAGAAATT
1 CCGAAGGACCGCGTAGAAATT
951955 CCTTAAGAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
24 21 0.54
25 18 0.46
ACGTcount: A:0.31, C:0.23, G:0.24, T:0.21
Consensus pattern (25 bp):
CCGAAGGACCGCGTAGAAATTTATC
Found at i:954643 original size:203 final size:203
Alignment explanation
Indices: 954291--954838 Score: 716
Period size: 203 Copynumber: 2.7 Consensus size: 203
954281 TATTTCCAAT
*
954291 GAAGAAGTTCATAATGAGAAGAACTTGTTAAACCTTAGCTCATTTCCATCACATAAGGAGTTGGA
1 GAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTAGCTCATTTCCATCACATAAGGAGTTGGA
* * * * * * *
954356 ACAACGCCAATACTTTGATCATCCGTTGCATATGGAGTTGGATCAACATCATCACTTTGTT-GAA
66 ACAACACCAATACTTGGCTCATCCATAGCATAAGGAGTTGGATCAGCATCATCACTTTGTTCG--
* ** * * *
954420 ATCCATCACAGAATGAGGTGGATCGACATTTCTAGTGG-AGAG-TTCATAAAGAGAAGAACTCAT
129 ATCCATCACAGAAGGAGGTGGATAAACACTTCCAATGGAAG-GTTTCATAAAGAGAAGAACTCAT
954483 CCGATGAGGGA
193 CCGATGAGGGA
* *
954494 GAAGAAGTTCAAAATGAGAAGAACTTGTTCAACCTTAGCTCGTTTCCATCACATAAGGAGTTGGA
1 GAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTAGCTCATTTCCATCACATAAGGAGTTGGA
* * * * *
954559 ATAGCACCAATACTTGGCTCATCCATCGTATAAGGAGTTCGATCAGCATCATCACTTTGTTCGAT
66 ACAACACCAATACTTGGCTCATCCATAGCATAAGGAGTTGGATCAGCATCATCACTTTGTTCGA-
* * * *
954624 TCCATCACAGAAGGAGGTGGATAAACACTTCCAATGGAAGGTTTGATAATGAGAAGAACTCGTTC
130 TCCATCACAGAAGGAGGTGGATAAACACTTCCAATGGAAGGTTTCATAAAGAGAAGAACTCATCC
954689 GATGAGGGA
195 GATGAGGGA
*
954698 GAAGAAGTTCATAATCAGAAGAACTTGTTCAACCTTAGCTCATTTCCATCACATAAGGAGTTGGA
1 GAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTAGCTCATTTCCATCACATAAGGAGTTGGA
* * * * *
954763 ACAACACCGA-CCTTGGCTCATCCATAACATAAGAAGTTGGAT-AGCATCATCA-TTTCGCTCGA
66 ACAACACCAATACTTGGCTCATCCATAGCATAAGGAGTTGGATCAGCATCATCACTTT-GTTCGA
954825 -CCATCACA-AAGGAG
130 TCCATCACAGAAGGAG
954839 TTAAGTCAAC
Statistics
Matches: 303, Mismatches: 37, Indels: 14
0.86 0.10 0.04
Matches are distributed among these distances:
199 6 0.02
200 8 0.03
201 3 0.01
202 16 0.05
203 170 0.56
204 100 0.33
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.26
Consensus pattern (203 bp):
GAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTAGCTCATTTCCATCACATAAGGAGTTGGA
ACAACACCAATACTTGGCTCATCCATAGCATAAGGAGTTGGATCAGCATCATCACTTTGTTCGAT
CCATCACAGAAGGAGGTGGATAAACACTTCCAATGGAAGGTTTCATAAAGAGAAGAACTCATCCG
ATGAGGGA
Found at i:956035 original size:16 final size:16
Alignment explanation
Indices: 956014--956049 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
956004 AAACTTTAAA
956014 TACTTAAGTAAATACT
1 TACTTAAGTAAATACT
956030 TACTTAAGTAAATACT
1 TACTTAAGTAAATACT
956046 TACT
1 TACT
956050 CAAATCGTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.42, C:0.14, G:0.06, T:0.39
Consensus pattern (16 bp):
TACTTAAGTAAATACT
Found at i:957405 original size:131 final size:128
Alignment explanation
Indices: 957056--957412 Score: 420
Period size: 129 Copynumber: 2.8 Consensus size: 128
957046 ATAATTTTAA
*
957056 GAGAGAAAATGATAATATTTAATTATTTCCAATCGAGAATAAATGACCTCTCATACCTTAAAGCA
1 GAGAGAGAATGATAATA-TTAATTATTTCCAATCGAGAATAAATGACCTCTCATACCTTAAAGCA
* * *
957121 TTCATTTATTACTCCGATCGAAATGAAGAGATATCACTATTTCGTATTAAAATCAATATCGATTT
65 TTCAATTATTACTCCAATCGAAATGAAGAGATATCACTATTTCGTA-TAAAATCAATATAGATTT
* * * * *
957186 GAGCG-GAAACGATAATATCTAA-GATTTCCAATCGAGAATGAATGACCTCTAATACCTTAAAGC
1 GAGAGAG-AATGATAATAT-TAATTATTTCCAATCGAGAATAAATGACCTCTCATACCTTAAAGC
* *
957249 ATTC-ATCTATTGCTCCAATCGAAATGAAGAGATATCACTATTCCATCGTA-AAAATCGATATTA
64 ATTCAAT-TATTACTCCAATCGAAATGAAGAGATATCACTATT---TCGTATAAAATCAATA-TA
957312 G-TTT
124 GATTT
* *
957316 GAGAGAGAATGATAATATTGAATTATTTTCAATCGAGAATAAATGACCTCTCATACATTAGAA-C
1 GAGAGAGAATGATAATATT-AATTATTTCCAATCGAGAATAAATGACCTCTCATACCTTA-AAGC
* * * *
957380 AATCAATTATTACTCCAACCAAAATGAAAAGAT
64 ATTCAATTATTACTCCAATCGAAATGAAGAGAT
957413 GTTACAATTC
Statistics
Matches: 192, Mismatches: 23, Indels: 23
0.81 0.10 0.10
Matches are distributed among these distances:
128 1 0.01
129 77 0.40
130 44 0.23
131 61 0.32
132 9 0.05
ACGTcount: A:0.40, C:0.16, G:0.13, T:0.31
Consensus pattern (128 bp):
GAGAGAGAATGATAATATTAATTATTTCCAATCGAGAATAAATGACCTCTCATACCTTAAAGCAT
TCAATTATTACTCCAATCGAAATGAAGAGATATCACTATTTCGTATAAAATCAATATAGATTT
Found at i:958966 original size:22 final size:22
Alignment explanation
Indices: 958936--958990 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
958926 CCGGTCCGAG
*
958936 CTGAGCTGAGCCGATCGAGTCGT
1 CTGA-CTGAGCCGATCGAGCCGT
*
958959 TTGACTGAGCCGATCGAGCCGT
1 CTGACTGAGCCGATCGAGCCGT
*
958981 CTGACCGAGC
1 CTGACTGAGC
958991 TGACTTGACC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
22 25 0.89
23 3 0.11
ACGTcount: A:0.18, C:0.29, G:0.33, T:0.20
Consensus pattern (22 bp):
CTGACTGAGCCGATCGAGCCGT
Found at i:967076 original size:3 final size:3
Alignment explanation
Indices: 967070--967098 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
967060 GTAGTAGTAG
967070 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
967099 TTATTATTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:967506 original size:134 final size:133
Alignment explanation
Indices: 967297--968299 Score: 895
Period size: 134 Copynumber: 7.5 Consensus size: 133
967287 ACGTTGACTA
* * * *
967297 ATTCCACTATTCTTCAGGGAAGATTGAATCGAG-GTATACTTGTTCCATTGTTACTTAGGGAAGA
1 ATTCCACTATTCTTCAGGGAAGATTGAATCG-GTGTAGACTTGTTCCACTGTTACTCAGGGAATA
* * * * * ** * * * **
967361 ACATATATTGAAAAAGAAGGATCCGTTC-CATTATTTCCTAAGGGAAAATTAGATCTGGAAAAGT
65 TCAAATCTTGAAAGAGAGGGATTTGTTCTC-TT-CTTCCTGAGGGAAAATCAGATCTGGGGAAGT
967425 TGATTC
128 TGATTC
* * * *
967431 ATTCCTCTGTTCTTCAGGGAAGATTGAATTGGTGTAGACTTGTTCTACTGTTACTCAGGGAATAT
1 ATTCCACTATTCTTCAGGGAAGATTGAATCGGTGTAGACTTGTTCCACTGTTACTCAGGGAATAT
* * * * * *
967496 TAAATCTTGAAAGAGAGGGATTTATTCTGCTTCTTCCTAAGGGAAAATCATATATGGGGACGTTG
66 CAAATCTTGAAAGAGAGGGATTTGTTCT-CTTCTTCCTGAGGGAAAATCAGATCTGGGGAAGTTG
967561 ATTC
130 ATTC
* * * * * *
967565 ATTCCACTATTCTTCAGGGAAGATT-AAT-GATGCAGACTTTTTTCCACTATTACTTAGAGAATA
1 ATTCCACTATTCTTCAGGGAAGATTGAATCGGTGTAGAC-TTGTTCCACTGTTACTCAGGGAATA
* ** * * * * * *
967628 TAAAATCTTGAAAGAGAGGGATACGTTCCGCTTTTTCCTGAGAGAAAATTAGATTTGGGGACGTT
65 TCAAATCTTGAAAGAGAGGGATTTGTT-CTCTTCTTCCTGAGGGAAAATCAGATCTGGGGAAGTT
967693 GATTC
129 GATTC
* * * * * *
967698 ATTCCACTGTTCTTCAAGGAAGATTAAATCGAG-GCAAACTTGTT-CACTGTTACTCAAGGAATA
1 ATTCCACTATTCTTCAGGGAAGATTGAATCG-GTGTAGACTTGTTCCACTGTTACTCAGGGAATA
* * * * * *
967761 TCAAATCTTGAAAAAGATGGATTTATTTCGCTTCTTCCTGAGGGAAAATCATATCTGGGGATGTT
65 TCAAATCTTGAAAGAGAGGGATTT-GTTCTCTTCTTCCTGAGGGAAAATCAGATCTGGGGAAGTT
967826 GATTC
129 GATTC
* * * *
967831 ATTCCACTATTCTTCAGGGAAGATTGAATCGAG-GCAGACTTGTTCCTCTGTTACTTAGGTAATA
1 ATTCCACTATTCTTCAGGGAAGATTGAATCG-GTGTAGACTTGTTCCACTGTTACTCAGGGAATA
* * * * * * * *
967895 TCAAATATTCAAAGACAGGGATATGTTCTTCTTCTTCCTGAGGGAAAATTAGGTATGGGGATGTT
65 TCAAATCTTGAAAGAGAGGGATTTGTTC-TCTTCTTCCTGAGGGAAAATCAGATCTGGGGAAGTT
*
967960 CATTC
129 GATTC
* * * *
967965 ATTACACTATTCTTCATGGAAGATTGAATCAAGT-TAGAGTTGTTCCACTGTTACTCAGGGAATA
1 ATTCCACTATTCTTCAGGGAAGATTGAATC-GGTGTAGACTTGTTCCACTGTTACTCAGGGAATA
* * ** *
968029 TCAAATATTGAAAGAG-GGAGATTTGTTATGCCGCTTCTTGAGGGAAAATCAGATCT--GGAAGC
65 TCAAATCTTGAAAGAGAGG-GATTTGTTCT-CTTCTTCCTGAGGGAAAATCAGATCTGGGGAAG-
*
968091 ATTGAATC
127 -TTGATTC
* * * *
968099 ATTCCATTGTTCTTCAGGGAAGATTGAATC-GTGGTAGAATT-TTCCACTGTTACTCAAGGAATA
1 ATTCCACTATTCTTCAGGGAAGATTGAATCGGT-GTAGACTTGTTCCACTGTTACTCAGGGAATA
* * * * * *
968162 TCAAATCTAGAAAGAGAGGGATTTGTTCCGCTTCTTCTTGAGGGAAAATCATATATGGGGATGTT
65 TCAAATCTTGAAAGAGAGGGATTTGTT-CTCTTCTTCCTGAGGGAAAATCAGATCTGGGGAAGTT
968227 GATTC
129 GATTC
* * * * *
968232 ATTCCACTGTATT-TT-AGAGAAGATTGAATCGAG-GTGGACTTATTCCACTGTTACTTAGAGAA
1 ATTCCAC--TATTCTTCAGGGAAGATTGAATCG-GTGTAGACTTGTTCCACTGTTACTCAGGGAA
968294 TATCAA
63 TATCAA
968300 TCTGTAATTA
Statistics
Matches: 710, Mismatches: 131, Indels: 56
0.79 0.15 0.06
Matches are distributed among these distances:
132 13 0.02
133 317 0.45
134 363 0.51
135 16 0.02
136 1 0.00
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.33
Consensus pattern (133 bp):
ATTCCACTATTCTTCAGGGAAGATTGAATCGGTGTAGACTTGTTCCACTGTTACTCAGGGAATAT
CAAATCTTGAAAGAGAGGGATTTGTTCTCTTCTTCCTGAGGGAAAATCAGATCTGGGGAAGTTGA
TTC
Found at i:968261 original size:267 final size:263
Alignment explanation
Indices: 967297--968299 Score: 1009
Period size: 267 Copynumber: 3.8 Consensus size: 263
967287 ACGTTGACTA
* * * * * * *
967297 ATTCCACTATTCTTCAGGGAAGATTGAATCGAGGTATACTTGTTCCATTGTTACTTAGGGAAGAA
1 ATTCCACTATTCTTCAGGGAAGATTGAATCGTGGCAGAATT-TTCCACTGTTACTTA-GGAATAT
* * * * ** * * * * ** *
967362 CATATATTGAAAAAGAAGGATCCGTTCC-ATTATTTCCTAAGGGAAAATTAGATCTGGAAAAGTT
64 CAAATCTTGAAAGAGAGGGATATGTTCCGCTT-CTTCCTGAGGGAAAATTAGATATGGGGATGTT
* * * *
967426 GATTCATTCCTCTGTTCTTCAGGGAAGATTGAATTG-GTGTAGACTTGTTCTACTGTTACTCAGG
128 GATTCATTCCACTGTTCTTCAGAGAAGATTGAATCGAG-GTAGACTTGTTCCACTGTTACTCAGG
* * *
967490 GAATATTAAATCTTGAAAGAGAGGGATTTATTCTGCTTCTTCCTAAGGGAAAATCATATATGGGG
192 GAATATCAAATCTTGAAAGAGAGGGATTTATT-TGCTTCTTCCTGAGGGAAAATCATATCT-GGG
*
967555 ACGTTGATTC
255 -CATTGATTC
* *
967565 ATTCCACTATTCTTCAGGGAAGATT-AAT-GAT-GCAGACTTTTTTCCACTATTACTTAGAGAAT
1 ATTCCACTATTCTTCAGGGAAGATTGAATCG-TGGCAGA--ATTTTCCACTGTTACTTAG-GAAT
* * * * * *
967627 ATAAAATCTTGAAAGAGAGGGATACGTTCCGCTTTTTCCTGAGAGAAAATTAGATTTGGGGACGT
62 ATCAAATCTTGAAAGAGAGGGATATGTTCCGCTTCTTCCTGAGGGAAAATTAGATATGGGGATGT
* * * *
967692 TGATTCATTCCACTGTTCTTCA-AGGAAGATTAAATCGAGGCAAACTTGTT-CACTGTTACTCAA
127 TGATTCATTCCACTGTTCTTCAGA-GAAGATTGAATCGAGGTAGACTTGTTCCACTGTTACTCAG
* *
967755 GGAATATCAAATCTTGAAAAAGATGGATTTATTTCGCTTCTTCCTGAGGGAAAATCATATCTGGG
191 GGAATATCAAATCTTGAAAGAGAGGGATTTATTT-GCTTCTTCCTGAGGGAAAATCATATCTGGG
*
967820 GATGTTGATTC
255 CA--TTGATTC
* * *
967831 ATTCCACTATTCTTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCTCTGTTACTTAGGTAATAT
1 ATTCCACTATTCTTCAGGGAAGATTGAATCGTGGCAGAATT-TTCCACTGTTACTTAGG-AATAT
* * * ** * *
967896 CAAATATTCAAAGACAGGGATATGTTCTTCTTCTTCCTGAGGGAAAATTAGGTATGGGGATGTTC
64 CAAATCTTGAAAGAGAGGGATATGTTCCGCTTCTTCCTGAGGGAAAATTAGATATGGGGATGTTG
* * * * *
967961 ATTCATTACACTATTCTTCATG-GAAGATTGAATCAAGTTAGAGTTGTTCCACTGTTACTCAGGG
129 ATTCATTCCACTGTTCTTCA-GAGAAGATTGAATCGAGGTAGACTTGTTCCACTGTTACTCAGGG
* * ** * *
968025 AATATCAAATATTGAAAGAG-GGAGATTTGTTATGCCGCTTCTTGAGGGAAAATCAGATCTGGAA
193 AATATCAAATCTTGAAAGAGAGG-GATTTATT-TGCTTCTTCCTGAGGGAAAATCATATCTGG--
*
968089 GCATTGAATC
254 GCATTGATTC
* * * *
968099 ATTCCATTGTTCTTCAGGGAAGATTGAATCGTGGTAGAATTTTCCACTGTTACTCAAGGAATATC
1 ATTCCACTATTCTTCAGGGAAGATTGAATCGTGGCAGAATTTTCCACTGTTACT-TAGGAATATC
* * * * *
968164 AAATCTAGAAAGAGAGGGATTTGTTCCGCTTCTTCTTGAGGGAAAATCATATATGGGGATGTTGA
65 AAATCTTGAAAGAGAGGGATATGTTCCGCTTCTTCCTGAGGGAAAATTAGATATGGGGATGTTGA
* * * * *
968229 TTCATTCCACTGTAT-TTTAGAGAAGATTGAATCGAGGTGGACTTATTCCACTGTTACTTAGAGA
130 TTCATTCCACTGT-TCTTCAGAGAAGATTGAATCGAGGTAGACTTGTTCCACTGTTACTCAGGGA
968293 ATATCAA
194 ATATCAA
968300 TCTGTAATTA
Statistics
Matches: 609, Mismatches: 101, Indels: 51
0.80 0.13 0.07
Matches are distributed among these distances:
265 4 0.01
266 107 0.18
267 349 0.57
268 146 0.24
269 1 0.00
270 2 0.00
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.33
Consensus pattern (263 bp):
ATTCCACTATTCTTCAGGGAAGATTGAATCGTGGCAGAATTTTCCACTGTTACTTAGGAATATCA
AATCTTGAAAGAGAGGGATATGTTCCGCTTCTTCCTGAGGGAAAATTAGATATGGGGATGTTGAT
TCATTCCACTGTTCTTCAGAGAAGATTGAATCGAGGTAGACTTGTTCCACTGTTACTCAGGGAAT
ATCAAATCTTGAAAGAGAGGGATTTATTTGCTTCTTCCTGAGGGAAAATCATATCTGGGCATTGA
TTC
Found at i:976174 original size:131 final size:131
Alignment explanation
Indices: 975809--976176 Score: 418
Period size: 131 Copynumber: 2.8 Consensus size: 131
975799 ATAATTTTAA
* *
975809 GAGAGAAAATGATAATATCTAATTATTTTCAATCAAGAATAAATGACCTTTCA-ACCTTAAAGCA
1 GAGAGAAAATGATAATATCTAATTATTTCCAATCAAGAATAAATGACCTCTCATACCTTAAAGCA
* * * * * * *
975873 TTCATTTATTACTCCGATCGAAATGAAGATACATCATTATTCCGTAGTAAAATTCAATATCGTTT
66 ATCATTTATTACTCCAATCGAAATGAAGATATATCACTATTCCATAGTAAAAATCAATATAGTTT
*
975938 T
131 C
* * * * * *
975939 GAGTGAAAACGATAATATCTAATGATTTCCAATCAAGAATATATGACCACTCATACCTTAAAGGA
1 GAGAGAAAATGATAATATCTAATTATTTCCAATCAAGAATAAATGACCTCTCATACCTTAAAGCA
* * * * ** *
976004 GTCATTTATTGCTACAATCGAAATGAAGAGATATCACTATTCCATCTTAAAAATCGATATTAG-T
66 ATCATTTATTACTCCAATCGAAATGAAGATATATCACTATTCCATAGTAAAAATCAATA-TAGTT
976068 TC
130 TC
* * * *
976070 GAGAGAGAATGATAATAT-AATATTATTTCCAATCGAGAATAAATGACCTCTCATACCTTAGAGC
1 GAGAGAAAATGATAATATCTA-ATTATTTCCAATCAAGAATAAATGACCTCTCATACCTTAAAGC
* * * *
976134 AATCATTTATTACTCCAACCGAAATGAAAATATGTTACTATTC
65 AATCATTTATTACTCCAATCGAAATGAAGATATATCACTATTC
976177 TCAATATCGA
Statistics
Matches: 195, Mismatches: 40, Indels: 5
0.81 0.17 0.02
Matches are distributed among these distances:
130 47 0.24
131 146 0.75
132 2 0.01
ACGTcount: A:0.40, C:0.16, G:0.12, T:0.32
Consensus pattern (131 bp):
GAGAGAAAATGATAATATCTAATTATTTCCAATCAAGAATAAATGACCTCTCATACCTTAAAGCA
ATCATTTATTACTCCAATCGAAATGAAGATATATCACTATTCCATAGTAAAAATCAATATAGTTT
C
Found at i:976803 original size:27 final size:27
Alignment explanation
Indices: 976771--976838 Score: 82
Period size: 28 Copynumber: 2.5 Consensus size: 27
976761 ACAAAATATA
** *
976771 AAAATAAATAAAATGTGGGACTAAATT
1 AAAATAAATAAAATGCAGGACCAAATT
* *
976798 AAAATAAAATAAAATGCATGCCCAAATT
1 AAAAT-AAATAAAATGCAGGACCAAATT
976826 AAAATAAATAAAA
1 AAAATAAATAAAA
976839 ACATATTCGA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
27 13 0.37
28 22 0.63
ACGTcount: A:0.62, C:0.07, G:0.09, T:0.22
Consensus pattern (27 bp):
AAAATAAATAAAATGCAGGACCAAATT
Found at i:982839 original size:24 final size:25
Alignment explanation
Indices: 982807--982872 Score: 98
Period size: 24 Copynumber: 2.6 Consensus size: 25
982797 CATGTTTTAT
* *
982807 GATAAAATTTTCTAGTAAAT-ATTA
1 GATAAAATTTTATAGTAAATAAATA
982831 GATAAAATTTTATAGTAAATAGAATA
1 GATAAAATTTTATAGTAAATA-AATA
982857 GATAAAATTTTATAGT
1 GATAAAATTTTATAGT
982873 TTCATAGTAA
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
24 19 0.50
26 19 0.50
ACGTcount: A:0.48, C:0.02, G:0.11, T:0.39
Consensus pattern (25 bp):
GATAAAATTTTATAGTAAATAAATA
Found at i:984893 original size:7 final size:8
Alignment explanation
Indices: 984864--984914 Score: 50
Period size: 8 Copynumber: 5.9 Consensus size: 8
984854 AACTTAATTG
984864 AAATAAAA
1 AAATAAAA
984872 AAATAGCATAA
1 AAATA--A-AA
984883 AAAT-AAA
1 AAATAAAA
984890 AAATAGTAAA
1 AAATA--AAA
984900 AAATAAAA
1 AAATAAAA
984908 AAATAAA
1 AAATAAA
984915 CATAAACATA
Statistics
Matches: 37, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
7 6 0.16
8 16 0.43
10 9 0.24
11 6 0.16
ACGTcount: A:0.78, C:0.02, G:0.04, T:0.16
Consensus pattern (8 bp):
AAATAAAA
Found at i:984901 original size:17 final size:18
Alignment explanation
Indices: 984864--984909 Score: 67
Period size: 17 Copynumber: 2.6 Consensus size: 18
984854 AACTTAATTG
984864 AAATAAAAAAATAGCATAA
1 AAAT-AAAAAATAGCATAA
*
984883 AAATAAAAAATAGTA-AA
1 AAATAAAAAATAGCATAA
984900 AAATAAAAAA
1 AAATAAAAAA
984910 ATAAACATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
17 12 0.46
18 10 0.38
19 4 0.15
ACGTcount: A:0.78, C:0.02, G:0.04, T:0.15
Consensus pattern (18 bp):
AAATAAAAAATAGCATAA
Found at i:984910 original size:18 final size:19
Alignment explanation
Indices: 984864--984926 Score: 76
Period size: 18 Copynumber: 3.4 Consensus size: 19
984854 AACTTAATTG
984864 AAATAAAAAAATAGCATAA
1 AAATAAAAAAATAGCATAA
*
984883 AAAT-AAAAAATAGTA-AA
1 AAATAAAAAAATAGCATAA
*
984900 AAATAAAAAAATAAACATAA
1 AAATAAAAAAAT-AGCATAA
*
984920 ACATAAA
1 AAATAAA
984927 TTAAAGGACC
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
17 6 0.16
18 17 0.46
19 6 0.16
20 8 0.22
ACGTcount: A:0.76, C:0.05, G:0.03, T:0.16
Consensus pattern (19 bp):
AAATAAAAAAATAGCATAA
Found at i:985076 original size:22 final size:21
Alignment explanation
Indices: 985026--985076 Score: 52
Period size: 22 Copynumber: 2.4 Consensus size: 21
985016 AAAATGAAAA
985026 AAATT-AAAATAACAGTAGCT
1 AAATTAAAAATAACAGTAGCT
* *
985046 GAATCAAAAACTAACAGT-GACT
1 AAATTAAAAA-TAACAGTAG-CT
985068 AAATTAAAA
1 AAATTAAAA
985077 CAAAATAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
20 3 0.12
21 5 0.21
22 16 0.67
ACGTcount: A:0.57, C:0.12, G:0.10, T:0.22
Consensus pattern (21 bp):
AAATTAAAAATAACAGTAGCT
Found at i:986749 original size:39 final size:39
Alignment explanation
Indices: 986694--986851 Score: 191
Period size: 39 Copynumber: 4.1 Consensus size: 39
986684 ATCTCAATTC
* *
986694 AGAT-AAATCTTTTGTTTCGAGTGAAACTATGTCAAGCG
1 AGATAAAATCTTCTGTTTCGAGTGAAACTATCTCAAGCG
986732 AGATAAAATCTTCTGTTTCGAGTGAAACTATCTCAAGCG
1 AGATAAAATCTTCTGTTTCGAGTGAAACTATCTCAAGCG
* *
986771 AGATAAAAATATTCTATTTCGAGTGAAA-TCATCTCAA--G
1 AGAT-AAAATCTTCTGTTTCGAGTGAAACT-ATCTCAAGCG
* * * *
986809 AGATATAATTTTATGTTTC-TGTGAAACTATCTCAAGCG
1 AGATAAAATCTTCTGTTTCGAGTGAAACTATCTCAAGCG
986847 AGATA
1 AGATA
986852 GTGAAACTAT
Statistics
Matches: 105, Mismatches: 9, Indels: 12
0.83 0.07 0.10
Matches are distributed among these distances:
36 13 0.12
37 12 0.11
38 15 0.14
39 37 0.35
40 28 0.27
ACGTcount: A:0.35, C:0.14, G:0.17, T:0.34
Consensus pattern (39 bp):
AGATAAAATCTTCTGTTTCGAGTGAAACTATCTCAAGCG
Found at i:986847 original size:76 final size:78
Alignment explanation
Indices: 986708--986851 Score: 204
Period size: 76 Copynumber: 1.9 Consensus size: 78
986698 AAATCTTTTG
* *
986708 TTTCGAGTGAAACTATGTCAAGCGAGATAAAATCTTCTGTTTCGAGTGAAACTATCTCAAGCGAG
1 TTTCGAGTGAAACTATCTCAA-CGAGATAAAATCTTATGTTTCGAGTGAAACTATCTCAAGCGAG
986773 ATAAAAATATTCTA
65 ATAAAAATATTCTA
* * *
986787 TTTCGAGTGAAA-TCATCTCAA-GAGATATAATTTTATGTTTC-TGTGAAACTATCTCAAGCGAG
1 TTTCGAGTGAAACT-ATCTCAACGAGATAAAATCTTATGTTTCGAGTGAAACTATCTCAAGCGAG
986849 ATA
65 ATA
986852 GTGAAACTAT
Statistics
Matches: 59, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
76 23 0.39
77 17 0.29
78 1 0.02
79 18 0.31
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (78 bp):
TTTCGAGTGAAACTATCTCAACGAGATAAAATCTTATGTTTCGAGTGAAACTATCTCAAGCGAGA
TAAAAATATTCTA
Found at i:986859 original size:23 final size:23
Alignment explanation
Indices: 986829--986873 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
986819 TTATGTTTCT
*
986829 GTGAAACTATCTCAAGCGAGATA
1 GTGAAACTATCTCAAGCAAGATA
986852 GTGAAACTATCTCAAGCAAGAT
1 GTGAAACTATCTCAAGCAAGAT
986874 GTTGATCCCT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.40, C:0.18, G:0.20, T:0.22
Consensus pattern (23 bp):
GTGAAACTATCTCAAGCAAGATA
Found at i:986887 original size:20 final size:20
Alignment explanation
Indices: 986862--986907 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
986852 GTGAAACTAT
986862 CTCAAGCAAGATGTTGATCC
1 CTCAAGCAAGATGTTGATCC
**
986882 CTCAAGTGAGATGTTGATCC
1 CTCAAGCAAGATGTTGATCC
986902 CTCAAG
1 CTCAAG
986908 TGAGGCGTCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (20 bp):
CTCAAGCAAGATGTTGATCC
Found at i:986908 original size:20 final size:20
Alignment explanation
Indices: 986870--986911 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
986860 ATCTCAAGCA
986870 AGATGTTGATCCCTCAAGTG
1 AGATGTTGATCCCTCAAGTG
986890 AGATGTTGATCCCTCAAGTG
1 AGATGTTGATCCCTCAAGTG
986910 AG
1 AG
986912 GCGTCGCTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (20 bp):
AGATGTTGATCCCTCAAGTG
Found at i:996358 original size:41 final size:42
Alignment explanation
Indices: 996306--996390 Score: 118
Period size: 42 Copynumber: 2.0 Consensus size: 42
996296 TGTCTTATGA
* * *
996306 ATGACCCGAAGGACTT-ATCATCTTGCTCGAAAGACTTATTG
1 ATGACCCGAAGGACTTAAGCATCATGCTCGAAAGACTTACTG
* *
996347 ATGACCTGAAGGATTTAAGCATCATGCTCGAAAGACTTACTG
1 ATGACCCGAAGGACTTAAGCATCATGCTCGAAAGACTTACTG
996389 AT
1 AT
996391 AGCCCAAAAG
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
41 14 0.37
42 24 0.63
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (42 bp):
ATGACCCGAAGGACTTAAGCATCATGCTCGAAAGACTTACTG
Found at i:996832 original size:277 final size:275
Alignment explanation
Indices: 996454--997131 Score: 968
Period size: 277 Copynumber: 2.5 Consensus size: 275
996444 AAAATCTTTC
* * *
996454 GTTT-TTAGTTGTCTTCAAGTAACCCCTAAAAATTAGGCTTAGCTTGCTTTAAAAATCTTTGGAG
1 GTTTCTTAGTTGTCATCAAG-GACCCCTAAAAATTAGGCTTAGCTTCCTTTAAAAATCTTTGGAG
* *
996518 ATAATCATCAAGAAACCCCTAAAAATCAGGATTAGTTTCTAAAAACTCATTTGAAAACATCCTGG
65 ATAATCATCAAGAAACCCCTAAAAATCAGGCTTAGTTTCTAAAAACTCATTTGAAAACATCCTGC
** * *
996583 CTGAAGGTCTTATGGATGGCCGGAAGGACTTATTATCTTGCTCGAAAGACTTATAGATGACCTGA
130 CCAAAGGTCTTATGGATGGCCCGAAGGACTTATCATCTTGCTCGAAAGACTTATAGATGACCTGA
* * *
996648 AGGTTTTAAGCATAATGCTCGAAAGACA-TACTGATGG-CCTAAAGGACTTACTCATCAACAAAC
195 AGGATTTAAGCATAATGCTCAAAAGA-ATTACTAATGGTCC-AAAGGACTTACTCATCAACAAAC
996711 CCTTAAAAATCAAGCTTA
258 CCTTAAAAATCAAGCTTA
*
996729 GTTTCTTAGTTATCATCAAGGATCCCCTAAAAATTAGGCTTAGCTTCCTTTAAAAATTCTTTGGA
1 GTTTCTTAGTTGTCATCAAGGA-CCCCTAAAAATTAGGCTTAGCTTCCTTTAAAAA-TCTTTGGA
* *
996794 GATAATCATCAAGAAATCCCTGAAAATCAGGCTTAGTTTCTAAAAACTCATTTGAAAACATCCTG
64 GATAATCATCAAGAAACCCCTAAAAATCAGGCTTAGTTTCTAAAAACTCATTTGAAAACATCCTG
* *
996859 CCCAAAGGTCTTATGGATGGCCCGAAGGACTTATCATCTTGCTCGAAAGACTTATAGATGGCTTG
129 CCCAAAGGTCTTATGGATGGCCCGAAGGACTTATCATCTTGCTCGAAAGACTTATAGATGACCTG
* * * * *
996924 AAGGATTTAAGCATCATGCTCAAAAGAATTACTAATGGTGCGAAGGACTTACTTATCAAGAAACC
194 AAGGATTTAAGCATAATGCTCAAAAGAATTACTAATGGTCCAAAGGACTTACTCATCAACAAACC
* *
996989 CTTGAAAATCAAGTTTA
259 CTTAAAAATCAAGCTTA
* * * *
997006 GTTTCTTAATTGTCATCAAGGAACCCTAAAAATTAGGCTTAACTTCCTTTTAAAAACTCTTTGGG
1 GTTTCTTAGTTGTCATCAAGGACCCCTAAAAATTAGGCTTAGCTTCC-TTTAAAAA-TCTTTGGA
* * * * *
997071 GATAATAATCAAGAAACCCCTAAAAATAAGGCTTAATTT-TTAAAAGTCATTTGAAAACATC
64 GATAATCATCAAGAAACCCCTAAAAATCAGGCTTAGTTTCTAAAAACTCATTTGAAAACATC
997132 AAGAAACCCC
Statistics
Matches: 360, Mismatches: 37, Indels: 11
0.88 0.09 0.03
Matches are distributed among these distances:
275 5 0.01
276 89 0.25
277 265 0.74
278 1 0.00
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.30
Consensus pattern (275 bp):
GTTTCTTAGTTGTCATCAAGGACCCCTAAAAATTAGGCTTAGCTTCCTTTAAAAATCTTTGGAGA
TAATCATCAAGAAACCCCTAAAAATCAGGCTTAGTTTCTAAAAACTCATTTGAAAACATCCTGCC
CAAAGGTCTTATGGATGGCCCGAAGGACTTATCATCTTGCTCGAAAGACTTATAGATGACCTGAA
GGATTTAAGCATAATGCTCAAAAGAATTACTAATGGTCCAAAGGACTTACTCATCAACAAACCCT
TAAAAATCAAGCTTA
Found at i:997233 original size:109 final size:109
Alignment explanation
Indices: 997019--997523 Score: 522
Period size: 109 Copynumber: 4.6 Consensus size: 109
997009 TCTTAATTGT
* * * *** * *
997019 CATCAAGGAA-CCCTAAAAATTAGGCTTAACTTCCTTTTAAAAACTCTTTGGGGATAATAATCAA
1 CATCAAGAAACCCCTAAAAA-TAGGCTTAGCTT-CTTTTAAAAAATCTTTGAAAATCATCATCAA
* * * * *
997083 GAAACCCCTAAAAATAAGGCTTAATT-TTTAAAAGTCATTTGAAAA
64 GAAACCCCTAAAAATCAGGCTTAGTTACTAAAAATTCATTTGAAAA
* *
997128 CATCAAGAAACCCCTAAAAATAGGTTTATCTTCTTTTAAAAAAATCTTTGAAAATCATCATCAAG
1 CATCAAGAAACCCCTAAAAATAGGCTTAGCTTCTTTT-AAAAAATCTTTGAAAATCATCATCAAG
* *
997193 AAACCCCTGAAAATCA-GCTTAGTTACTAAAAATTCTTTTGAAAA
65 AAACCCCTAAAAATCAGGCTTAGTTACTAAAAATTCATTTGAAAA
* * *
997237 TATCAAGAAA-CCCTAAAAATCAGGCTTAGCTTCTTTTAAGAAATTCATTGAAAATCATCATCAA
1 CATCAAGAAACCCCTAAAAAT-AGGCTTAGCTTCTTTTAA-AAAATCTTTGAAAATCATCATCAA
* * * *
997301 GAAACCCCTGAAAATTAGGCTTAGTTTCTAAAAACTCATTTGAAAA
64 GAAACCCCTAAAAATCAGGCTTAGTTACTAAAAATTCATTTGAAAA
* * * *
997347 CATCAAAAAACCCCTAAAAATTAGGCTTAGCTTATTTTAAGAAATTTATTGAAAATCATCATCAA
1 CATCAAGAAACCCCTAAAAA-TAGGCTTAGCTTCTTTTAAAAAATCT-TTGAAAATCATCATCAA
*
997412 GAAACCCCTAAAAATCAGGCTTAGCTTATTTTAAGAAATTCA-TTGAAAATCA
64 GAAACCCCTAAAAATCAGGCTTAG-TTA--CTAA-AAATTCATTTG-AAA--A
* *
997464 TCATCAAGAAACCCCTAAAAATAAGGCTTAGTTTC-TTT-AAAATTCATTTGAAAAT-ATCAT
1 -CATCAAGAAACCCCTAAAAAT-AGGCTTAGCTTCTTTTAAAAAATC-TTTGAAAATCATCAT
997524 GTTATCTGGG
Statistics
Matches: 334, Mismatches: 43, Indels: 32
0.82 0.11 0.08
Matches are distributed among these distances:
108 24 0.07
109 130 0.39
110 45 0.13
111 65 0.19
112 3 0.01
114 6 0.02
115 14 0.04
116 12 0.04
117 6 0.02
118 29 0.09
ACGTcount: A:0.43, C:0.17, G:0.10, T:0.30
Consensus pattern (109 bp):
CATCAAGAAACCCCTAAAAATAGGCTTAGCTTCTTTTAAAAAATCTTTGAAAATCATCATCAAGA
AACCCCTAAAAATCAGGCTTAGTTACTAAAAATTCATTTGAAAA
Found at i:997323 original size:59 final size:58
Alignment explanation
Indices: 997018--997523 Score: 451
Period size: 59 Copynumber: 9.1 Consensus size: 58
997008 TTCTTAATTG
* * * * * *** *
997018 TCATCAAGGAA-CCCTAAAAATTAGGCTTAACTTCCTTTTAAAAACTCTTTGGGGATAA
1 TCATCAAGAAACCCCTAAAAATCAGGCTTAGCTT-CTTTTAAAAATTCATTGAAAATCA
* * * *
997076 TAATCAAGAAACCCCTAAAAATAAGGCTTA--AT-TTTT-AAAAGTCATTTG-AAA--A
1 TCATCAAGAAACCCCTAAAAATCAGGCTTAGCTTCTTTTAAAAATTCA-TTGAAAATCA
* * * *
997128 -CATCAAGAAACCCCTAAAAAT-AGGTTTATCTTCTTTTAAAAAAATCTTTGAAAATCA
1 TCATCAAGAAACCCCTAAAAATCAGGCTTAGCTTCTTTT-AAAAATTCATTGAAAATCA
* *
997185 TCATCAAGAAACCCCTGAAAATCA-GCTTAG-TTAC---TAAAAATTCTTTTG-AAA--A
1 TCATCAAGAAACCCCTAAAAATCAGGCTTAGCTT-CTTTTAAAAATTC-ATTGAAAATCA
997237 T-ATCAAGAAA-CCCTAAAAATCAGGCTTAGCTTCTTTTAAGAAATTCATTGAAAATCA
1 TCATCAAGAAACCCCTAAAAATCAGGCTTAGCTTCTTTTAA-AAATTCATTGAAAATCA
* * * *
997294 TCATCAAGAAACCCCTGAAAATTAGGCTTAG--T-TTCTAAAAACTCATTTGAAAA-CA
1 TCATCAAGAAACCCCTAAAAATCAGGCTTAGCTTCTTTTAAAAATTCA-TTGAAAATCA
* * *
997349 TCA--AA-AAACCCCTAAAAATTAGGCTTAGCTTATTTTAAGAAATTTATTGAAAATCA
1 TCATCAAGAAACCCCTAAAAATCAGGCTTAGCTTCTTTTAA-AAATTCATTGAAAATCA
*
997405 TCATCAAGAAACCCCTAAAAATCAGGCTTAGCTTATTTTAAGAAATTCATTGAAAATCA
1 TCATCAAGAAACCCCTAAAAATCAGGCTTAGCTTCTTTTAA-AAATTCATTGAAAATCA
* *
997464 TCATCAAGAAACCCCTAAAAATAAGGCTTAGTTTC-TTT-AAAATTCATTTGAAAAT-A
1 TCATCAAGAAACCCCTAAAAATCAGGCTTAGCTTCTTTTAAAAATTCA-TTGAAAATCA
997520 TCAT
1 TCAT
997524 GTTATCTGGG
Statistics
Matches: 381, Mismatches: 32, Indels: 72
0.79 0.07 0.15
Matches are distributed among these distances:
50 17 0.04
51 36 0.09
52 28 0.07
53 6 0.02
54 27 0.07
55 53 0.14
56 34 0.09
57 16 0.04
58 48 0.13
59 116 0.30
ACGTcount: A:0.42, C:0.17, G:0.10, T:0.30
Consensus pattern (58 bp):
TCATCAAGAAACCCCTAAAAATCAGGCTTAGCTTCTTTTAAAAATTCATTGAAAATCA
Found at i:1005439 original size:20 final size:19
Alignment explanation
Indices: 1005397--1005439 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
1005387 AATTAAATCG
* * *
1005397 AATATAATATTTGAAATTG
1 AATATAAAATTTAAAATTC
1005416 AATATAAAATCTTAAAATTC
1 AATATAAAAT-TTAAAATTC
1005436 AATA
1 AATA
1005440 ACGCTTTATT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 9 0.45
20 11 0.55
ACGTcount: A:0.53, C:0.05, G:0.05, T:0.37
Consensus pattern (19 bp):
AATATAAAATTTAAAATTC
Found at i:1007264 original size:13 final size:14
Alignment explanation
Indices: 1007245--1007282 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 14
1007235 CTAATGGGCA
1007245 AATTTTGAAAAACT
1 AATTTTGAAAAACT
1007259 -ATTTTG-AAAACT
1 AATTTTGAAAAACT
*
1007271 AAGTTTGAAAAA
1 AATTTTGAAAAA
1007283 TTATAATATG
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
12 6 0.29
13 11 0.52
14 4 0.19
ACGTcount: A:0.50, C:0.05, G:0.11, T:0.34
Consensus pattern (14 bp):
AATTTTGAAAAACT
Found at i:1007377 original size:21 final size:23
Alignment explanation
Indices: 1007346--1007389 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
1007336 TTAAATCAAA
*
1007346 AAAAAATAATTTTG-AAAATTAT
1 AAAAAATAATTCTGAAAAATTAT
1007368 AAAAAA-AATTCTGAAAAATTAT
1 AAAAAATAATTCTGAAAAATTAT
1007390 GTTTTGATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.32
Consensus pattern (23 bp):
AAAAAATAATTCTGAAAAATTAT
Found at i:1010387 original size:15 final size:15
Alignment explanation
Indices: 1010321--1010411 Score: 57
Period size: 15 Copynumber: 6.0 Consensus size: 15
1010311 TATAAGTTTG
1010321 TATAT-AACTATATTTA
1 TATATAAACTATA--TA
1010337 TACTATAAACTATATA
1 TA-TATAAACTATATA
*
1010353 -ATTATTATAAC-CTATA
1 TA-TA-TA-AACTATATA
*
1010369 TATATAAAC--TATG
1 TATATAAACTATATA
*
1010382 TATATAAATTATATA
1 TATATAAACTATATA
*
1010397 TGTATAAACTATATA
1 TATATAAACTATATA
1010412 AACTATATAG
Statistics
Matches: 61, Mismatches: 7, Indels: 15
0.73 0.08 0.18
Matches are distributed among these distances:
13 11 0.18
14 3 0.05
15 21 0.34
16 12 0.20
17 7 0.11
18 7 0.11
ACGTcount: A:0.47, C:0.08, G:0.02, T:0.43
Consensus pattern (15 bp):
TATATAAACTATATA
Found at i:1010419 original size:33 final size:32
Alignment explanation
Indices: 1010382--1010467 Score: 84
Period size: 33 Copynumber: 2.6 Consensus size: 32
1010372 ATAAACTATG
1010382 TATATAAATTATATATGTATAAACTATATAAA
1 TATATAAATTATATATGTATAAACTATATAAA
** ** *
1010414 CTATATAGTTTATATAT-TATAATTTATATTAA
1 -TATATAAATTATATATGTATAAACTATATAAA
*
1010446 TATAGTATATATATATATGTAT
1 TATA-TAAAT-TATATATGTAT
1010468 GTATAACTAA
Statistics
Matches: 43, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
31 4 0.09
32 15 0.35
33 21 0.49
34 3 0.07
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.48
Consensus pattern (32 bp):
TATATAAATTATATATGTATAAACTATATAAA
Found at i:1010563 original size:7 final size:7
Alignment explanation
Indices: 1010551--1010589 Score: 51
Period size: 7 Copynumber: 5.6 Consensus size: 7
1010541 TGGTTTATAA
1010551 AAACCCT
1 AAACCCT
1010558 AAACCCT
1 AAACCCT
* *
1010565 AAAACAT
1 AAACCCT
1010572 AAACCCT
1 AAACCCT
*
1010579 AAATCCT
1 AAACCCT
1010586 AAAC
1 AAAC
1010590 TTTATAAACT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.51, C:0.33, G:0.00, T:0.15
Consensus pattern (7 bp):
AAACCCT
Found at i:1011335 original size:17 final size:17
Alignment explanation
Indices: 1011313--1011367 Score: 74
Period size: 17 Copynumber: 3.2 Consensus size: 17
1011303 ATGGGCAGTG
1011313 GACTGGTTTGACCCGTT
1 GACTGGTTTGACCCGTT
*
1011330 GACTGGTTTGACCTGTT
1 GACTGGTTTGACCCGTT
**
1011347 GATCCAGTTTGACCCGTT
1 GA-CTGGTTTGACCCGTT
1011365 GAC
1 GAC
1011368 CCAGTCTGAC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
17 19 0.58
18 14 0.42
ACGTcount: A:0.15, C:0.24, G:0.27, T:0.35
Consensus pattern (17 bp):
GACTGGTTTGACCCGTT
Found at i:1011358 original size:18 final size:18
Alignment explanation
Indices: 1011318--1011377 Score: 68
Period size: 18 Copynumber: 3.4 Consensus size: 18
1011308 CAGTGGACTG
**
1011318 GTTTGACCCGTTGA-CTG
1 GTTTGACCCGTTGACCCA
* *
1011335 GTTTGACCTGTTGATCCA
1 GTTTGACCCGTTGACCCA
1011353 GTTTGACCCGTTGACCCA
1 GTTTGACCCGTTGACCCA
*
1011371 GTCTGAC
1 GTTTGAC
1011378 ATGAGCCGTT
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
17 13 0.36
18 23 0.64
ACGTcount: A:0.15, C:0.27, G:0.25, T:0.33
Consensus pattern (18 bp):
GTTTGACCCGTTGACCCA
Found at i:1011407 original size:18 final size:18
Alignment explanation
Indices: 1011383--1011423 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
1011373 CTGACATGAG
1011383 CCGTTGACCCGACCCGAC
1 CCGTTGACCCGACCCGAC
*
1011401 TCGTTGACCCGACCCGAC
1 CCGTTGACCCGACCCGAC
1011419 CCGTT
1 CCGTT
1011424 AACGTTAACG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.15, C:0.46, G:0.22, T:0.17
Consensus pattern (18 bp):
CCGTTGACCCGACCCGAC
Found at i:1012966 original size:35 final size:36
Alignment explanation
Indices: 1012896--1012969 Score: 105
Period size: 37 Copynumber: 2.1 Consensus size: 36
1012886 ACAATAGTTA
* *
1012896 ATATATGTAACTTATAGTATATGTATACATGTAAACT
1 ATATATGTAACTTATAGTACATGTATA-ATATAAACT
*
1012933 ATATATGTAACTTATAGTACATGTAT-GTATAAACT
1 ATATATGTAACTTATAGTACATGTATAATATAAACT
1012968 AT
1 AT
1012970 GTATAGTATA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
35 9 0.26
37 25 0.74
ACGTcount: A:0.41, C:0.08, G:0.11, T:0.41
Consensus pattern (36 bp):
ATATATGTAACTTATAGTACATGTATAATATAAACT
Found at i:1013130 original size:21 final size:21
Alignment explanation
Indices: 1013106--1013153 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
1013096 TACCCTAACT
**
1013106 CTAAACTTTAAACCTTAAACC
1 CTAAACTAGAAACCTTAAACC
* *
1013127 CTAAAATAGAAACTTTAAACC
1 CTAAACTAGAAACCTTAAACC
1013148 CTAAAC
1 CTAAAC
1013154 ACTATACATA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.48, C:0.25, G:0.02, T:0.25
Consensus pattern (21 bp):
CTAAACTAGAAACCTTAAACC
Found at i:1013265 original size:2 final size:2
Alignment explanation
Indices: 1013258--1013316 Score: 50
Period size: 2 Copynumber: 29.0 Consensus size: 2
1013248 ATGTATAAAC
* *
1013258 TA TA TA TA GTA TA TA -A TA AA CTA TA TA TA TA TA TA TA -A TC TA
1 TA TA TA TA -TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA
*
1013300 TA GTA TA TG TA TA TA TA
1 TA -TA TA TA TA TA TA TA
1013317 CAATCTATTT
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
1 2 0.04
2 39 0.85
3 5 0.11
ACGTcount: A:0.47, C:0.03, G:0.05, T:0.44
Consensus pattern (2 bp):
TA
Found at i:1013295 original size:22 final size:21
Alignment explanation
Indices: 1013244--1013348 Score: 119
Period size: 20 Copynumber: 5.0 Consensus size: 21
1013234 TGCATGTATC
*
1013244 ATGTATGTATAAACTATATAT
1 ATGTATATATAAACTATATAT
1013265 A-GTATATAATAAACTATATAT
1 ATGTATAT-ATAAACTATATAT
*
1013286 A--TATATATAATCTATAGTAT
1 ATGTATATATAAACTATA-TAT
*
1013306 ATGTATATATACAATCTATTTAT
1 ATGTATATATA-AA-CTATATAT
1013329 ATGT-TATATAAACTATATAT
1 ATGTATATATAAACTATATAT
1013349 GTAACCTATA
Statistics
Matches: 73, Mismatches: 5, Indels: 13
0.80 0.05 0.14
Matches are distributed among these distances:
19 9 0.12
20 21 0.29
21 17 0.23
22 14 0.19
23 8 0.11
24 4 0.05
ACGTcount: A:0.45, C:0.06, G:0.06, T:0.44
Consensus pattern (21 bp):
ATGTATATATAAACTATATAT
Found at i:1013306 original size:24 final size:24
Alignment explanation
Indices: 1013258--1013324 Score: 75
Period size: 24 Copynumber: 2.8 Consensus size: 24
1013248 ATGTATAAAC
*
1013258 TATATATAGTATATAA--TAAACTA
1 TATATATA-TATATAATCTATACTA
*
1013281 TATATATATATATAATCTATAGTA
1 TATATATATATATAATCTATACTA
* *
1013305 TATGTATATATACAATCTAT
1 TATATATATATATAATCTAT
1013325 TTATATGTTA
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
22 7 0.18
23 8 0.21
24 23 0.61
ACGTcount: A:0.46, C:0.06, G:0.04, T:0.43
Consensus pattern (24 bp):
TATATATATATATAATCTATACTA
Found at i:1013336 original size:24 final size:24
Alignment explanation
Indices: 1013279--1013345 Score: 79
Period size: 24 Copynumber: 3.0 Consensus size: 24
1013269 TATAATAAAC
* *
1013279 TATATATATATATATAATCTATAG
1 TATATGTATATATACAATCTATAG
*
1013303 TATATGTATATATACAATCTAT-T
1 TATATGTATATATACAATCTATAG
1013326 TATATGT-TATATA-AA-CTATA
1 TATATGTATATATACAATCTATA
1013346 TATGTAACCT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
20 4 0.10
21 2 0.05
22 6 0.15
23 7 0.18
24 20 0.51
ACGTcount: A:0.43, C:0.06, G:0.04, T:0.46
Consensus pattern (24 bp):
TATATGTATATATACAATCTATAG
Found at i:1013420 original size:19 final size:19
Alignment explanation
Indices: 1013392--1013428 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
1013382 AGTGTACTAT
* *
1013392 ATAGTTTATACTTTATAAC
1 ATAGTATATAATTTATAAC
1013411 ATAGTATATAATTTATAA
1 ATAGTATATAATTTATAA
1013429 ACTATAGTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.43, C:0.05, G:0.05, T:0.46
Consensus pattern (19 bp):
ATAGTATATAATTTATAAC
Found at i:1013527 original size:22 final size:21
Alignment explanation
Indices: 1013501--1013588 Score: 85
Period size: 22 Copynumber: 4.1 Consensus size: 21
1013491 TATAAACTAT
1013501 ATTATATTAATATTAATTATAA
1 ATTATATTAATATTAA-TATAA
1013523 ATTATATT-ATA-TAATATAA
1 ATTATATTAATATTAATATAA
*
1013542 GTTAATATTAAT-TATAATATATA
1 ATT-ATATTAATAT-TAATATA-A
1013565 ATTAT-TATAATATTAATTATAA
1 ATTATAT-TAATATTAA-TATAA
1013587 AT
1 AT
1013589 ATTAATTAAT
Statistics
Matches: 56, Mismatches: 2, Indels: 16
0.76 0.03 0.22
Matches are distributed among these distances:
19 7 0.12
20 8 0.14
21 6 0.11
22 27 0.48
23 8 0.14
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (21 bp):
ATTATATTAATATTAATATAA
Found at i:1013528 original size:34 final size:33
Alignment explanation
Indices: 1013468--1013588 Score: 94
Period size: 34 Copynumber: 3.7 Consensus size: 33
1013458 TAACTATAAT
* **
1013468 TTATATTAATA-TAGTATATAGTTTATAAACTATA
1 TTATATTAATATTAAT-TATAAATTATAAA-TATA
*
1013502 TTATATTAATATTAATTATAAATTATATTATATA
1 TTATATTAATATTAATTATAAATTATA-AATATA
*
1013536 ATATAAGTTAATATTAATTAT-AA-TAT--ATA-A
1 TTAT-A-TTAATATTAATTATAAATTATAAATATA
1013566 TTAT-TATAATATTAATTATAAAT
1 TTATAT-TAATATTAATTATAAAT
1013589 ATTAATTAAT
Statistics
Matches: 74, Mismatches: 6, Indels: 18
0.76 0.06 0.18
Matches are distributed among these distances:
27 1 0.01
28 13 0.18
29 2 0.03
30 4 0.05
31 3 0.04
34 30 0.41
35 7 0.09
36 14 0.19
ACGTcount: A:0.48, C:0.01, G:0.02, T:0.49
Consensus pattern (33 bp):
TTATATTAATATTAATTATAAATTATAAATATA
Found at i:1013584 original size:28 final size:29
Alignment explanation
Indices: 1013522--1013596 Score: 93
Period size: 28 Copynumber: 2.6 Consensus size: 29
1013512 ATTAATTATA
*
1013522 AATTATATTATATAA-TATAAGTTAATATT
1 AATTATAATATATAATTATAAG-TAATATT
*
1013551 AATTATAATATATAATTATTA-TAATATT
1 AATTATAATATATAATTATAAGTAATATT
1013579 AATTATAA-ATATTAATTA
1 AATTATAATATA-TAATTA
1013597 ATAAAATTAT
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
27 3 0.07
28 21 0.50
29 14 0.33
30 4 0.10
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.48
Consensus pattern (29 bp):
AATTATAATATATAATTATAAGTAATATT
Found at i:1013605 original size:13 final size:12
Alignment explanation
Indices: 1013512--1013605 Score: 66
Period size: 13 Copynumber: 7.3 Consensus size: 12
1013502 TTATATTAAT
1013512 ATTAATTAT-AA
1 ATTAATTATAAA
*
1013523 ATTATATTATATA
1 ATTA-ATTATAAA
* *
1013536 ATATAAGT-TAAT
1 AT-TAATTATAAA
*
1013548 ATTAATTATAAT
1 ATTAATTATAAA
1013560 ATATAATTATTATAA
1 AT-TAATTA-TA-AA
1013575 TATTAATTATAAA
1 -ATTAATTATAAA
1013588 TATTAATTAATAAA
1 -ATTAATT-ATAAA
1013602 ATTA
1 ATTA
1013606 TATAGAGATG
Statistics
Matches: 68, Mismatches: 6, Indels: 16
0.76 0.07 0.18
Matches are distributed among these distances:
11 8 0.12
12 15 0.22
13 25 0.37
14 11 0.16
15 7 0.10
16 2 0.03
ACGTcount: A:0.52, C:0.00, G:0.01, T:0.47
Consensus pattern (12 bp):
ATTAATTATAAA
Found at i:1014359 original size:29 final size:29
Alignment explanation
Indices: 1014325--1014428 Score: 102
Period size: 29 Copynumber: 3.6 Consensus size: 29
1014315 CCTAAACATG
1014325 AACCCAAACCCGAA-CTGAAACCCTAACTA
1 AACCCAAACCCGAACCT-AAACCCTAACTA
**
1014354 AACCCAAACATGAACCTAAACCCTAACTA
1 AACCCAAACCCGAACCTAAACCCTAACTA
* * * * **
1014383 AACACAAACCCAAACCCAAACCCAAACCCG
1 AACCCAAACCCGAACCTAAACCCTAA-CTA
*
1014413 AACTCAAACCCGAACC
1 AACCCAAACCCGAACC
1014429 CAAATCCAAA
Statistics
Matches: 61, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
29 44 0.72
30 17 0.28
ACGTcount: A:0.47, C:0.40, G:0.05, T:0.08
Consensus pattern (29 bp):
AACCCAAACCCGAACCTAAACCCTAACTA
Found at i:1014411 original size:6 final size:6
Alignment explanation
Indices: 1014325--1014484 Score: 90
Period size: 6 Copynumber: 26.7 Consensus size: 6
1014315 CCTAAACATG
* ** * * *** *
1014325 AACCCA AACCCG AACTGA AACCCT AA-CTA AACCCA AACATG AACCTA
1 AACCCA AACCCA AACCCA AACCCA AACCCA AACCCA AACCCA AACCCA
* * * * *
1014372 AACCCT AA-CTA AACACA AACCCA AACCCA AACCCA AACCCG AACTCA
1 AACCCA AACCCA AACCCA AACCCA AACCCA AACCCA AACCCA AACCCA
* * * * *
1014419 AACCCG AACCCA AATCCAA AACCCA AATCGA AATCCA AACCCAA AACCCA
1 AACCCA AACCCA AA-CCCA AACCCA AACCCA AACCCA AACCC-A AACCCA
* * *
1014469 ACCCCT AACCCG AACC
1 AACCCA AACCCA AACC
1014485 TAAAAAACCT
Statistics
Matches: 112, Mismatches: 38, Indels: 8
0.71 0.24 0.05
Matches are distributed among these distances:
5 6 0.05
6 95 0.85
7 11 0.10
ACGTcount: A:0.47, C:0.41, G:0.04, T:0.07
Consensus pattern (6 bp):
AACCCA
Found at i:1014443 original size:13 final size:13
Alignment explanation
Indices: 1014425--1014469 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
1014415 CTCAAACCCG
1014425 AACCCAAATCCAA
1 AACCCAAATCCAA
*
1014438 AACCCAAAT-CGA
1 AACCCAAATCCAA
* *
1014450 AATCCAAACCCAA
1 AACCCAAATCCAA
1014463 AACCCAA
1 AACCCAA
1014470 CCCCTAACCC
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
12 9 0.35
13 17 0.65
ACGTcount: A:0.53, C:0.38, G:0.02, T:0.07
Consensus pattern (13 bp):
AACCCAAATCCAA
Found at i:1014779 original size:17 final size:17
Alignment explanation
Indices: 1014738--1014770 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
1014728 AATTTGTAGT
1014738 TATTGTTGATTTGTTTC
1 TATTGTTGATTTGTTTC
*
1014755 TACTGTTGATTTGTTT
1 TATTGTTGATTTGTTT
1014771 GTGTTGTTGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.12, C:0.06, G:0.18, T:0.64
Consensus pattern (17 bp):
TATTGTTGATTTGTTTC
Found at i:1016719 original size:14 final size:14
Alignment explanation
Indices: 1016700--1016746 Score: 50
Period size: 14 Copynumber: 3.7 Consensus size: 14
1016690 TATTTTTCTT
1016700 TATATAAATTAAAC
1 TATATAAATTAAAC
1016714 TATAT-AATT----
1 TATATAAATTAAAC
1016723 TATATAAATTAAAC
1 TATATAAATTAAAC
*
1016737 TATATTAATT
1 TATATAAATT
1016747 TTCCTTTGTA
Statistics
Matches: 27, Mismatches: 1, Indels: 10
0.71 0.03 0.26
Matches are distributed among these distances:
9 5 0.19
10 4 0.15
13 4 0.15
14 14 0.52
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (14 bp):
TATATAAATTAAAC
Found at i:1016725 original size:23 final size:24
Alignment explanation
Indices: 1016698--1016747 Score: 93
Period size: 23 Copynumber: 2.1 Consensus size: 24
1016688 ATTATTTTTC
1016698 TTTATATAAATTAAACTATA-TAA
1 TTTATATAAATTAAACTATATTAA
1016721 TTTATATAAATTAAACTATATTAA
1 TTTATATAAATTAAACTATATTAA
1016745 TTT
1 TTT
1016748 TCCTTTGTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 20 0.77
24 6 0.23
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (24 bp):
TTTATATAAATTAAACTATATTAA
Found at i:1017037 original size:16 final size:16
Alignment explanation
Indices: 1017016--1017053 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
1017006 CGGATCATTT
*
1017016 ACAGGTCAGGTTCATA
1 ACAGGTCAGGTTCAAA
*
1017032 ACAGGTCAGGTTGAAA
1 ACAGGTCAGGTTCAAA
1017048 ACAGGT
1 ACAGGT
1017054 TGGGTAATAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.34, C:0.16, G:0.29, T:0.21
Consensus pattern (16 bp):
ACAGGTCAGGTTCAAA
Found at i:1020773 original size:15 final size:15
Alignment explanation
Indices: 1020753--1020791 Score: 78
Period size: 15 Copynumber: 2.6 Consensus size: 15
1020743 CTGACCTGAT
1020753 TGAGTCAACCAGTAC
1 TGAGTCAACCAGTAC
1020768 TGAGTCAACCAGTAC
1 TGAGTCAACCAGTAC
1020783 TGAGTCAAC
1 TGAGTCAAC
1020792 TCGATTGAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.33, C:0.26, G:0.21, T:0.21
Consensus pattern (15 bp):
TGAGTCAACCAGTAC
Found at i:1020818 original size:13 final size:14
Alignment explanation
Indices: 1020753--1020821 Score: 63
Period size: 15 Copynumber: 4.9 Consensus size: 14
1020743 CTGACCTGAT
1020753 TGAGTCAAC-CAGTAC
1 TGAGTCAACTC-G-AC
1020768 TGAGTCAAC-CAGTAC
1 TGAGTCAACTC-G-AC
*
1020783 TGAGTCAACTCGAT
1 TGAGTCAACTCGAC
1020797 TGAGTCAACTC-AC
1 TGAGTCAACTCGAC
*
1020810 TGGGTCAACTCG
1 TGAGTCAACTCG
1020822 TTAACTTTGA
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
13 11 0.22
14 12 0.24
15 25 0.51
16 1 0.02
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.23
Consensus pattern (14 bp):
TGAGTCAACTCGAC
Found at i:1020856 original size:30 final size:30
Alignment explanation
Indices: 1020820--1020946 Score: 146
Period size: 30 Copynumber: 4.0 Consensus size: 30
1020810 TGGGTCAACT
*
1020820 CGTTAACTTTGACTGAGTCAACCCATTGAC
1 CGTTAACTTTGACCGAGTCAACCCATTGAC
* *
1020850 CGTTAACCGTTCACTTTGACCGAGTCAACCCGTTGAT
1 CGTT-A------ACTTTGACCGAGTCAACCCATTGAC
*
1020887 CGTTAACTTTGACCGAGTCAACCCGTTGAC
1 CGTTAACTTTGACCGAGTCAACCCATTGAC
*
1020917 CGTTCACTTTGACCGAGTCAACCCATTGAC
1 CGTTAACTTTGACCGAGTCAACCCATTGAC
1020947 TTTGACTTTG
Statistics
Matches: 84, Mismatches: 6, Indels: 14
0.81 0.06 0.13
Matches are distributed among these distances:
30 56 0.67
31 1 0.01
36 1 0.01
37 26 0.31
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (30 bp):
CGTTAACTTTGACCGAGTCAACCCATTGAC
Found at i:1020917 original size:17 final size:17
Alignment explanation
Indices: 1020865--1020946 Score: 54
Period size: 17 Copynumber: 5.3 Consensus size: 17
1020855 ACCGTTCACT
1020865 TTGACCGAGTCAACCCG
1 TTGACCGAGTCAACCCG
* * *
1020882 TTGATC--GTTAA--CT
1 TTGACCGAGTCAACCCG
1020895 TTGACCGAGTCAACCCG
1 TTGACCGAGTCAACCCG
* *
1020912 TTGACCG-TTC-A--CT
1 TTGACCGAGTCAACCCG
*
1020925 TTGACCGAGTCAACCCA
1 TTGACCGAGTCAACCCG
1020942 TTGAC
1 TTGAC
1020947 TTTGACTTTG
Statistics
Matches: 47, Mismatches: 10, Indels: 16
0.64 0.14 0.22
Matches are distributed among these distances:
13 14 0.30
14 2 0.04
15 10 0.21
16 2 0.04
17 19 0.40
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (17 bp):
TTGACCGAGTCAACCCG
Found at i:1021732 original size:24 final size:24
Alignment explanation
Indices: 1021699--1021781 Score: 94
Period size: 24 Copynumber: 3.5 Consensus size: 24
1021689 TAAATAAAAT
*
1021699 ATAATTCAGATCAGATATCAGAAC
1 ATAATTCAGATCAGAAATCAGAAC
* * **
1021723 ATAATCCAGATCAGAAATAAGATT
1 ATAATTCAGATCAGAAATCAGAAC
*
1021747 AGAATTCAGATCAGAAATCAGAAC
1 ATAATTCAGATCAGAAATCAGAAC
* *
1021771 AGAAATCAGAT
1 ATAATTCAGAT
1021782 AAAAACATTC
Statistics
Matches: 48, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 48 1.00
ACGTcount: A:0.49, C:0.14, G:0.14, T:0.22
Consensus pattern (24 bp):
ATAATTCAGATCAGAAATCAGAAC
Found at i:1021745 original size:12 final size:12
Alignment explanation
Indices: 1021704--1021781 Score: 77
Period size: 12 Copynumber: 6.5 Consensus size: 12
1021694 AAAATATAAT
*
1021704 TCAGATCAGATA
1 TCAGATCAGAAA
* *
1021716 TCAGAACA-TAA
1 TCAGATCAGAAA
1021727 TCCAGATCAGAAA
1 T-CAGATCAGAAA
* * *
1021740 TAAGATTAGAAT
1 TCAGATCAGAAA
1021752 TCAGATCAGAAA
1 TCAGATCAGAAA
*
1021764 TCAGAACAGAAA
1 TCAGATCAGAAA
1021776 TCAGAT
1 TCAGAT
1021782 AAAAACATTC
Statistics
Matches: 51, Mismatches: 13, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
11 2 0.04
12 46 0.90
13 3 0.06
ACGTcount: A:0.49, C:0.15, G:0.15, T:0.21
Consensus pattern (12 bp):
TCAGATCAGAAA
Found at i:1023956 original size:24 final size:24
Alignment explanation
Indices: 1023926--1024011 Score: 91
Period size: 24 Copynumber: 3.6 Consensus size: 24
1023916 CCATAAATAA
* *
1023926 AACATAATTCAGATCAGATATCAT
1 AACATAATTCAGATCAGAAATCAG
* *
1023950 AACATAATCCAGATTAGAAATCAG
1 AACATAATTCAGATCAGAAATCAG
* * *
1023974 AACAGAATTCAGATCAAAAATTAG
1 AACATAATTCAGATCAGAAATCAG
* *
1023998 AACAGAAATCAGAT
1 AACATAATTCAGAT
1024012 AAAAACATTC
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 52 1.00
ACGTcount: A:0.51, C:0.15, G:0.12, T:0.22
Consensus pattern (24 bp):
AACATAATTCAGATCAGAAATCAG
Found at i:1023980 original size:12 final size:12
Alignment explanation
Indices: 1023965--1024010 Score: 56
Period size: 12 Copynumber: 3.8 Consensus size: 12
1023955 AATCCAGATT
1023965 AGAAATCAGAAC
1 AGAAATCAGAAC
* *
1023977 AGAATTCAGATC
1 AGAAATCAGAAC
* *
1023989 AAAAATTAGAAC
1 AGAAATCAGAAC
1024001 AGAAATCAGA
1 AGAAATCAGA
1024011 TAAAAACATT
Statistics
Matches: 26, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.57, C:0.13, G:0.15, T:0.15
Consensus pattern (12 bp):
AGAAATCAGAAC
Found at i:1025482 original size:24 final size:24
Alignment explanation
Indices: 1025433--1025516 Score: 82
Period size: 24 Copynumber: 3.6 Consensus size: 24
1025423 CCCTAAATAA
* * *
1025433 AACATAATTCACATCAGATATAAG
1 AACATAATTCAGATCAGAAATCAG
*
1025457 AACATAATCCAGATCAGAAATCAG
1 AACATAATTCAGATCAGAAATCAG
* * *
1025481 AATAGAATTCTGATCAGAAATCA-
1 AACATAATTCAGATCAGAAATCAG
*
1025504 AACA-AAATCAGAT
1 AACATAATTCAGAT
1025517 AAAACATTCA
Statistics
Matches: 49, Mismatches: 11, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
22 7 0.14
23 3 0.06
24 39 0.80
ACGTcount: A:0.51, C:0.17, G:0.11, T:0.21
Consensus pattern (24 bp):
AACATAATTCAGATCAGAAATCAG
Found at i:1027685 original size:24 final size:24
Alignment explanation
Indices: 1027655--1027740 Score: 109
Period size: 24 Copynumber: 3.6 Consensus size: 24
1027645 CCCTAAATAA
* * *
1027655 AACATAATTCACATCAGATATCAT
1 AACATAATTCAGATCAGAAATCAG
*
1027679 AACATAATCCAGATCAGAAATCAG
1 AACATAATTCAGATCAGAAATCAG
*
1027703 AACAGAATTCAGATCAGAAATCAG
1 AACATAATTCAGATCAGAAATCAG
* *
1027727 AACAAAAATCAGAT
1 AACATAATTCAGAT
1027741 AAAAATATTC
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 54 1.00
ACGTcount: A:0.51, C:0.19, G:0.10, T:0.20
Consensus pattern (24 bp):
AACATAATTCAGATCAGAAATCAG
Found at i:1027708 original size:12 final size:12
Alignment explanation
Indices: 1027688--1027739 Score: 68
Period size: 12 Copynumber: 4.3 Consensus size: 12
1027678 TAACATAATC
*
1027688 CAGATCAGAAAT
1 CAGAACAGAAAT
*
1027700 CAGAACAGAATT
1 CAGAACAGAAAT
*
1027712 CAGATCAGAAAT
1 CAGAACAGAAAT
*
1027724 CAGAACAAAAAT
1 CAGAACAGAAAT
1027736 CAGA
1 CAGA
1027740 TAAAAATATT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 34 1.00
ACGTcount: A:0.54, C:0.17, G:0.15, T:0.13
Consensus pattern (12 bp):
CAGAACAGAAAT
Found at i:1030038 original size:14 final size:14
Alignment explanation
Indices: 1030005--1030062 Score: 64
Period size: 14 Copynumber: 4.1 Consensus size: 14
1029995 TCAAAATCAA
* *
1030005 CGAGTTAACCCAGT
1 CGAGTTGACTCAGT
1030019 -GAGTTGACTCAGT
1 CGAGTTGACTCAGT
*
1030032 CGAGTTGACTCAAT
1 CGAGTTGACTCAGT
*
1030046 ACGGGTTGACTCAGT
1 -CGAGTTGACTCAGT
1030061 CG
1 CG
1030063 GGTTAGGCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
13 11 0.30
14 14 0.38
15 12 0.32
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (14 bp):
CGAGTTGACTCAGT
Found at i:1030066 original size:14 final size:14
Alignment explanation
Indices: 1030021--1030066 Score: 65
Period size: 14 Copynumber: 3.2 Consensus size: 14
1030011 AACCCAGTGA
*
1030021 GTTGACTCAGTCGA
1 GTTGACTCAGTCGG
*
1030035 GTTGACTCAATACGG
1 GTTGACTCAGT-CGG
1030050 GTTGACTCAGTCGG
1 GTTGACTCAGTCGG
1030064 GTT
1 GTT
1030067 AGGCGGGTCG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
14 16 0.57
15 12 0.43
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (14 bp):
GTTGACTCAGTCGG
Found at i:1047579 original size:134 final size:134
Alignment explanation
Indices: 1047417--1047883 Score: 518
Period size: 135 Copynumber: 3.5 Consensus size: 134
1047407 ATTCCATTGT
* * * * *
1047417 TCTTCAGGAAGACCAAATCTGAGAGAAGAAGAATTTGTTTCACTATTCTTTAGGGGAGATCAGAC
1 TCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTAATCTTTAGGGGAGATCAGAC
* * * *
1047482 TCGATA-ATATTTTGA-TCAACTTCACTGCTCTTAAGGGAAGATTGAATCAGAAACGATTTGCTT
66 TCGA-ACATATTTTGATTC-ACTTCGCTGCTCTTCAGGAAAGATTGAATCAGAAATGATTTGCTT
*
1047545 TGCTGG
129 TGCTGC
* *
1047551 TCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCATTAAACTTTAGGGGAAGATCAGA
1 TCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTAATCTTTAGGGG-AGATCAGA
* * * * *
1047616 CTC-AAGATACTTTTGATTCACTTTGCTGCTCATCAGGAAAGATTAAATC-GAATTTGATTTGCT
65 CTCGAACATA-TTTTGATTCACTTCGCTGCTCTTCAGGAAAGATTGAATCAGAA-ATGATTTGCT
**
1047679 CCGCTGC
128 TTGCTGC
* * * * *
1047686 TCTTCAAGAATACCAAATCTGAAAGAAGAAAAATCTACTCCACTACTCTTTAGGGGAGATCAGAC
1 TCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTAATCTTTAGGGGAGATCAGAC
* **
1047751 TCGAGACA-CTTTTGATTCACTTCGCCACTCTTCAGGAAAGATTGAAT-A-AAATTGATTTGCTT
66 TCGA-ACATATTTTGATTCACTTCGCTGCTCTTCAGGAAAGATTGAATCAGAAA-TGATTTGCTT
*
1047813 TACTGC
129 TGCTGC
* * * *
1047819 TCTTCAGGAAGA-GAAACTCTAAAAGTAGAAGAATCTGCTCCACTAATCTTTAGGGGATATCAGA
1 TCTTCAGGAAGACCAAA-TCTGAAAGAAGAAGAATCTGCTCCACTAATCTTTAGGGGAGATCAGA
1047883 C
65 C
1047884 CTTTCAAAGA
Statistics
Matches: 278, Mismatches: 45, Indels: 21
0.81 0.13 0.06
Matches are distributed among these distances:
132 3 0.01
133 68 0.24
134 100 0.36
135 103 0.37
136 4 0.01
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (134 bp):
TCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTAATCTTTAGGGGAGATCAGAC
TCGAACATATTTTGATTCACTTCGCTGCTCTTCAGGAAAGATTGAATCAGAAATGATTTGCTTTG
CTGC
Found at i:1047690 original size:135 final size:133
Alignment explanation
Indices: 1047417--1047883 Score: 537
Period size: 134 Copynumber: 3.5 Consensus size: 133
1047407 ATTCCATTGT
* * * * *
1047417 TCTTCAGGAAGACCAAATCTGAGAGAAGAAGAATTTGTTTCACTATTCTTTAGGGGAGATCAGAC
1 TCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTAATCTTTAGGGGAGATCAGAC
* * * **
1047482 TCGATA-ATA-TTTTGA-TCAACTTCACTGCTCTTAAGGGAAGATTGAATCAGAAACGATTTGCT
66 TC-A-AGATACTTTTGATTC-ACTTCGCTGCTCTTCAGGAAAGATTGAATC-GAATTGATTTGCT
*
1047544 TTGCTGG
127 TTGCTGC
* *
1047551 TCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCATTAAACTTTAGGGGAAGATCAGA
1 TCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTAATCTTTAGGGG-AGATCAGA
* * * **
1047616 CTCAAGATACTTTTGATTCACTTTGCTGCTCATCAGGAAAGATTAAATCGAATTTGATTTGCTCC
65 CTCAAGATACTTTTGATTCACTTCGCTGCTCTTCAGGAAAGATTGAATCGAA-TTGATTTGCTTT
1047681 GCTGC
129 GCTGC
* * * * *
1047686 TCTTCAAGAATACCAAATCTGAAAGAAGAAAAATCTACTCCACTACTCTTTAGGGGAGATCAGAC
1 TCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTAATCTTTAGGGGAGATCAGAC
* * ** ** *
1047751 TCGAGACACTTTTGATTCACTTCGCCACTCTTCAGGAAAGATTGAATAAAATTGATTTGCTTTAC
66 TCAAGATACTTTTGATTCACTTCGCTGCTCTTCAGGAAAGATTGAATCGAATTGATTTGCTTTGC
1047816 TGC
131 TGC
* * * *
1047819 TCTTCAGGAAGA-GAAACTCTAAAAGTAGAAGAATCTGCTCCACTAATCTTTAGGGGATATCAGA
1 TCTTCAGGAAGACCAAA-TCTGAAAGAAGAAGAATCTGCTCCACTAATCTTTAGGGGAGATCAGA
1047883 C
65 C
1047884 CTTTCAAAGA
Statistics
Matches: 281, Mismatches: 46, Indels: 13
0.83 0.14 0.04
Matches are distributed among these distances:
132 3 0.01
133 67 0.24
134 107 0.38
135 102 0.36
136 2 0.01
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (133 bp):
TCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTAATCTTTAGGGGAGATCAGAC
TCAAGATACTTTTGATTCACTTCGCTGCTCTTCAGGAAAGATTGAATCGAATTGATTTGCTTTGC
TGC
Found at i:1048892 original size:45 final size:45
Alignment explanation
Indices: 1048580--1049007 Score: 269
Period size: 45 Copynumber: 10.0 Consensus size: 45
1048570 AAAATGACAT
* *
1048580 CACTAAAATG-TTGAC-TCTTCTTCCCGAGAAAGTCAAGGAA-GACAA
1 CACTAAAA-GATTGACTTC-TCTTCACGAGAAAGTCAA-GAATAACAA
* * * * * * ** *
1048625 CGCTAAAAGATTGAGTTTTCTACACGAGAAAGTTAAGTAGGATAA
1 CACTAAAAGATTGACTTCTCTTCACGAGAAAGTCAAGAATAACAA
** * **
1048670 CACTAAACTATTGACTTCTCTTCACAAGAAAGTCAAGAAGGACAA
1 CACTAAAAGATTGACTTCTCTTCACGAGAAAGTCAAGAATAACAA
* ** * * * *
1048715 CACTAAAATATTGACCCCTCTTCACAAGAAAGTTAAGAA-ATGCAT
1 CACTAAAAGATTGACTTCTCTTCACGAGAAAGTCAAGAATA-ACAA
* * *
1048760 CACTAAAAGATTGACTCCACTTCATGAGAAAGTCAAGAATAA-AA
1 CACTAAAAGATTGACTTCTCTTCACGAGAAAGTCAAGAATAACAA
* * * * *
1048804 AACTGAAAGATTGACTTCTATTCACGAGAAAGTCAGGAGTAACAA
1 CACTAAAAGATTGACTTCTCTTCACGAGAAAGTCAAGAATAACAA
* *
1048849 TACTAAAAGATTAACTTCTCTTCACGAGAAAGTCAAGAAT----A
1 CACTAAAAGATTGACTTCTCTTCACGAGAAAGTCAAGAATAACAA
* *
1048890 -AC--AAAGATTGACTTCTCTCCACGAGAAATTCAAGAAT----A
1 CACTAAAAGATTGACTTCTCTTCACGAGAAAGTCAAGAATAACAA
* * *
1048928 -AC--AAAGATCGACTTCTCTTCATGAGGAAGTCAAGAATAA-AA
1 CACTAAAAGATTGACTTCTCTTCACGAGAAAGTCAAGAATAACAA
* * *
1048969 -AC-----GATTCACTTCTCTTCACGAGGAAGTCGAGAATAACAA
1 CACTAAAAGATTGACTTCTCTTCACGAGAAAGTCAAGAATAACAA
1049008 AGATTGATTC
Statistics
Matches: 314, Mismatches: 59, Indels: 26
0.79 0.15 0.07
Matches are distributed among these distances:
38 95 0.30
39 2 0.01
40 2 0.01
41 4 0.01
44 38 0.12
45 171 0.54
46 2 0.01
ACGTcount: A:0.42, C:0.19, G:0.16, T:0.23
Consensus pattern (45 bp):
CACTAAAAGATTGACTTCTCTTCACGAGAAAGTCAAGAATAACAA
Found at i:1048905 original size:38 final size:38
Alignment explanation
Indices: 1048854--1049457 Score: 770
Period size: 38 Copynumber: 15.8 Consensus size: 38
1048844 AACAATACTA
* *
1048854 AAAGATTAACTTCTCTTCACGAGAAAGTCAAGAATAAC
1 AAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAAC
* * *
1048892 AAAGATTGACTTCTCTCCACGAGAAATTCAAGAATAAC
1 AAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAAC
* *
1048930 AAAGATCGACTTCTCTTCATGAGGAAGTCAAGAATAA-
1 AAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAAC
* *
1048967 AAACGATTCACTTCTCTTCACGAGGAAGTCGAGAATAAC
1 AAA-GATTGACTTCTCTTCACGAGGAAGTCAAGAATAAC
* ** *
1049006 AAAGATTGA-TTCCTATTCTTGAGGAAATCAAGAATAAC
1 AAAGATTGACTT-CTCTTCACGAGGAAGTCAAGAATAAC
* * *
1049044 ATTGAAAGATTGAATCCTCTTCGCGAGGAAGTC-AGTAATAAC
1 ----AAAGATTGACTTCTCTTCACGAGGAAGTCAAG-AATAAC
* *
1049086 AAAGATTGACTTCTCTTCATGAGGAAGTCAAGAGTAAC
1 AAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAAC
* *
1049124 AAAAATTGACTTCTCTTCACGAGGAAGACAAGAATAAC
1 AAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAAC
* * * * * *
1049162 AAAGATCGACTTCTCTTTATGAGTAAGTGAAGAATAAA
1 AAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAAC
*
1049200 AAAGATTGAATTCTCTTCACGAGGAAGTCAAGAATAAC
1 AAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAAC
* *
1049238 AAAGATTGACTTCTCTTCATGAGGAAGTCAAG-A-GAC
1 AAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAAC
* *
1049274 AAATATTGACTTCTCTTCACGAGAAAGTC-AGTAATAAC
1 AAAGATTGACTTCTCTTCACGAGGAAGTCAAG-AATAAC
*
1049312 AAAGATTGACTTCTCTTCACGAGGAAGTCAAGAGTAAC
1 AAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAAC
* *
1049350 AAAGATTGACTTCTCTTCATGAGGAAGTCGAGAATAAC
1 AAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAAC
* *
1049388 AAAGATTGACTTCTCTTCATGAGGAAGTCAAGAGTAAC
1 AAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAAC
1049426 AAAGATTGACTTCTCTTCACGAGGAAGTCAAG
1 AAAGATTGACTTCTCTTCACGAGGAAGTCAAG
1049458 TTGAAGCTTG
Statistics
Matches: 489, Mismatches: 63, Indels: 28
0.84 0.11 0.05
Matches are distributed among these distances:
35 2 0.00
36 28 0.06
37 7 0.01
38 414 0.85
39 7 0.01
41 2 0.00
42 28 0.06
43 1 0.00
ACGTcount: A:0.39, C:0.17, G:0.18, T:0.25
Consensus pattern (38 bp):
AAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAAC
Found at i:1049072 original size:42 final size:42
Alignment explanation
Indices: 1049006--1049086 Score: 101
Period size: 42 Copynumber: 1.9 Consensus size: 42
1048996 CGAGAATAAC
* **
1049006 AAAGATTGATTCCTATTCTTGAGGAAATCAAG-AATAACATTG
1 AAAGATTGAATCCTATTCGCGAGGAAATC-AGTAATAACATTG
* *
1049048 AAAGATTGAATCCTCTTCGCGAGGAAGTCAGTAATAACA
1 AAAGATTGAATCCTATTCGCGAGGAAATCAGTAATAACA
1049087 AAGATTGACT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
41 2 0.06
42 31 0.94
ACGTcount: A:0.40, C:0.15, G:0.19, T:0.27
Consensus pattern (42 bp):
AAAGATTGAATCCTATTCGCGAGGAAATCAGTAATAACATTG
Found at i:1051399 original size:7 final size:7
Alignment explanation
Indices: 1051373--1051457 Score: 73
Period size: 7 Copynumber: 11.9 Consensus size: 7
1051363 TACTTGATTT
1051373 TTTTTTC
1 TTTTTTC
*
1051380 TTTTTCC
1 TTTTTTC
*
1051387 TCTTTTC
1 TTTTTTC
1051394 TTTTTT-
1 TTTTTTC
1051400 TCTTTTTC
1 T-TTTTTC
1051408 TTTTTTCTC
1 -TTTTT-TC
1051417 TTTTTTC
1 TTTTTTC
*
1051424 TTATTTC
1 TTTTTTC
* *
1051431 TTTTCTA
1 TTTTTTC
*
1051438 TATTTTC
1 TTTTTTC
*
1051445 TCTTTTC
1 TTTTTTC
1051452 TTTTTT
1 TTTTTT
1051458 TCCCTTCTTA
Statistics
Matches: 61, Mismatches: 13, Indels: 8
0.74 0.16 0.10
Matches are distributed among these distances:
6 1 0.02
7 48 0.79
8 9 0.15
9 3 0.05
ACGTcount: A:0.04, C:0.18, G:0.00, T:0.79
Consensus pattern (7 bp):
TTTTTTC
Found at i:1051399 original size:21 final size:20
Alignment explanation
Indices: 1051373--1051456 Score: 73
Period size: 22 Copynumber: 4.0 Consensus size: 20
1051363 TACTTGATTT
1051373 TTTTTTCTTTTTCCTCTTTTC
1 TTTTTTCTTTTT-CTCTTTTC
*
1051394 TTTTTTTCTTTTTCTTTTTTCTC
1 -TTTTTTCTTTTTC-TCTTT-TC
*
1051417 TTTTTTCTTATT-TCTTTTC
1 TTTTTTCTTTTTCTCTTTTC
1051436 TATATTTTCTCTTTTCT-TTTT
1 T-T-TTTTCT-TTTTCTCTTTT
1051457 TTCCCTTCTT
Statistics
Matches: 52, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
19 3 0.06
20 5 0.10
21 7 0.13
22 34 0.65
23 3 0.06
ACGTcount: A:0.04, C:0.18, G:0.00, T:0.79
Consensus pattern (20 bp):
TTTTTTCTTTTTCTCTTTTC
Found at i:1051409 original size:28 final size:28
Alignment explanation
Indices: 1051370--1051459 Score: 114
Period size: 28 Copynumber: 3.2 Consensus size: 28
1051360 AAATACTTGA
*
1051370 TTTT-TTTTTCTTTTTCCTCTTTTCTTT
1 TTTTCTTTTTCTTTTTTCTCTTTTCTTT
1051397 TTTTCTTTTTCTTTTTTCTCTTTT-TTCT
1 TTTTCTTTTTCTTTTTTCTCTTTTCTT-T
1051425 TATTTC-TTTTCTATATTTTCTCTTTTCTTT
1 T-TTTCTTTTTCT-T-TTTTCTCTTTTCTTT
1051455 TTTTC
1 TTTTC
1051460 CCTTCTTATT
Statistics
Matches: 56, Mismatches: 1, Indels: 10
0.84 0.01 0.15
Matches are distributed among these distances:
27 6 0.11
28 26 0.46
29 9 0.16
30 13 0.23
31 2 0.04
ACGTcount: A:0.03, C:0.18, G:0.00, T:0.79
Consensus pattern (28 bp):
TTTTCTTTTTCTTTTTTCTCTTTTCTTT
Found at i:1051421 original size:37 final size:37
Alignment explanation
Indices: 1051371--1051483 Score: 97
Period size: 37 Copynumber: 3.0 Consensus size: 37
1051361 AATACTTGAT
* * *
1051371 TTTTTTTTCTTTTTCCTCT-TTTCTTTT-TTTCTTTTTC
1 TTTTTTCTCTTTTTCCT-TATTTCTTTTCTAT-ATTTTC
*
1051408 TTTTTTCTCTTTTTTCTTATTTCTTTTCTATATTTTC
1 TTTTTTCTCTTTTTCCTTATTTCTTTTCTATATTTTC
* * * *
1051445 TCTTTTCTTTTTTTCCCTTCTTAT-TTTTCTATCTTTTC
1 TTTTTTCTCTTTTT-CCTTATT-TCTTTTCTATATTTTC
1051483 T
1 T
1051484 CTCTCTCTCT
Statistics
Matches: 63, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
36 1 0.02
37 40 0.63
38 21 0.33
39 1 0.02
ACGTcount: A:0.04, C:0.19, G:0.00, T:0.76
Consensus pattern (37 bp):
TTTTTTCTCTTTTTCCTTATTTCTTTTCTATATTTTC
Found at i:1057640 original size:84 final size:84
Alignment explanation
Indices: 1057549--1057711 Score: 240
Period size: 84 Copynumber: 1.9 Consensus size: 84
1057539 CAATTGTGTT
* * *
1057549 TCATAAATCTATGACACGCATTTATGA-TGCT-CATTGCGCGTCATTGAAGCCCCATCATAAATG
1 TCATAAATCTATGACACGCATGTATGACT--TACATTGCACGTCATTGAAGCCCCATCATAAATA
1057612 AAGATGACACACATTTTTGTG
64 AAGATGACACACATTTTTGTG
* * *
1057633 TCATAAATTTATGACACGCATGTATGACTTACATTGCATGTCATTGAAGCCCCGTCATAAATAAA
1 TCATAAATCTATGACACGCATGTATGACTTACATTGCACGTCATTGAAGCCCCATCATAAATAAA
1057698 GATGACACACATTT
66 GATGACACACATTT
1057712 GTATGACTTA
Statistics
Matches: 71, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
83 1 0.01
84 69 0.97
85 1 0.01
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.31
Consensus pattern (84 bp):
TCATAAATCTATGACACGCATGTATGACTTACATTGCACGTCATTGAAGCCCCATCATAAATAAA
GATGACACACATTTTTGTG
Found at i:1060691 original size:16 final size:16
Alignment explanation
Indices: 1060670--1060714 Score: 90
Period size: 16 Copynumber: 2.8 Consensus size: 16
1060660 AACTTACAGC
1060670 TAGAAACCTTTGCAGT
1 TAGAAACCTTTGCAGT
1060686 TAGAAACCTTTGCAGT
1 TAGAAACCTTTGCAGT
1060702 TAGAAACCTTTGC
1 TAGAAACCTTTGC
1060715 TGTGTACCAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (16 bp):
TAGAAACCTTTGCAGT
Found at i:1068316 original size:41 final size:42
Alignment explanation
Indices: 1068252--1068330 Score: 99
Period size: 41 Copynumber: 1.9 Consensus size: 42
1068242 TTCGAGCATG
* *
1068252 ATGATTAAATCCTTCAGGTCATCTGTAAG-CCGTTCGAGTAAA
1 ATGATTAAATCCTTCAGGCCATCTATAAGACC-TTCGAGTAAA
* *
1068294 ATGA-TAAGTCCTTCGGGCCATCTATAAGACCTTCGAG
1 ATGATTAAATCCTTCAGGCCATCTATAAGACCTTCGAG
1068331 CTAGATGCTT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
41 26 0.81
42 6 0.19
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (42 bp):
ATGATTAAATCCTTCAGGCCATCTATAAGACCTTCGAGTAAA
Found at i:1068417 original size:257 final size:235
Alignment explanation
Indices: 1068215--1069327 Score: 1136
Period size: 237 Copynumber: 4.7 Consensus size: 235
1068205 TCGAAGATGA
* *
1068215 TAAGTCCTCCAGTCCATCAACAAGTCTTTCGAGCATGATGATTAAATCCTTCAGGTCATCTGTAA
1 TAAGTCCTCCAGGCCATCAATAAGTCTTTCGAGCATGATGATTAAATCCTTCAGGTCATCTGTAA
* * * * *
1068280 GCCGTTCGAGTAAAATGATAAGTCCTTCGGGCCATCTATAAGACCTTCGAGCTAGATGCTTTCAC
66 GCCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAAGACCTTCGGGC-AGATGATTTCAC
* *
1068345 AAGAATTTGAAAAATGAGAAAACAATTTTCAAAGTTTCTCATTTAATGTTTTCAGAAAATGAAAT
130 ATGAATTTGAAAAATGAGAAAACGATTTTCAAAGTTTCTCATTTAATGTTTTCAGAAAATGAAAT
1068410 CTTTGAAAAGTAAGAAAGTGATTTCCAAAGTTTCTTACTTAG
195 -TTTGAAAAGTAAGAAAGTGATTTCCAAAGTTTCTTACTTAG
* * * * *
1068452 TAAGTCCTTCAGGCCATTAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGGGACATCTGTAA
1 TAAGTCCTCCAGGCCATCAATAAGTCTTTCGAGCATGATGATTAAATCCTTCAGGTCATCTGTAA
* *
1068517 GCCTTTCGAGCAAGATGATAAGTCCTTCGGTCCATCTATAAGACCTTTGGGCAGAAT-ATTTACA
66 GCCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAAGACCTTCGGGCAG-ATGATTT-CA
* *
1068581 CATGAATTTGAAAAAAATGAGAAAATGATTTTCAAAGTTTCTCAATTAATGTTTTCAG----T--
129 CATGAATTTG--AAAAATGAGAAAACGATTTTCAAAGTTTCTCATTTAATGTTTTCAGAAAATGA
* * *
1068640 AA--GTGAAAAGTAAGAAAATTATTTCCAAAGTTTCTTACTTAG
192 AATTTTGAAAAGTAAGAAAGTGATTTCCAAAGTTTCTTACTTAG
*** * * * *
1068682 TAAGTCCTTTGGGCCATCAGTAAGTCATTCGAGCATGATGATTAAATCTTTC-GG-CTATCTGTC
1 TAAGTCCTCCAGGCCATCAATAAGTCTTTCGAGCATGATGATTAAATCCTTCAGGTC-ATCTGTA
* * * * * * * * *
1068745 AGGCTTTCGAGCCAGGTGATAAGTCCTTCGGGTCATCCATAAGACCTGCAGGTAGGATGTTTTCA
65 AGCCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAAGACCTTCGGGCA-GATGATTTCA
* *** * *
1068810 CGTGAATTTTGAAAAATGAGAAAGTTATTTCCAAAGTTTCTTATTTAATGCATTTT-A-AAAATG
129 CATGAA-TTTGAAAAATGAGAAAACGATTTTCAAAGTTTCTCATTTAATG--TTTTCAGAAAATG
* ** * ***
1068873 AAATTTTTTAAAAGTAAGAAAACGATTACTTGAGTTTCTTACTTAG
191 AAA-TTTTGAAAAGTAAGAAAGTGATTTCCAAAGTTTCTTACTTAG
* *** * * * *
1068919 TAATTTCCTTTGGGCCATCAGTAAGTCTATCGAGCATGATGATTAAATCCTTCGGGTCATCTTTA
1 TAA-GTCCTCCAGGCCATCAATAAGTCTTTCGAGCATGATGATTAAATCCTTCAGGTCATCTGTA
* * * *
1068984 AGCCTTTCTAGTAAGATGATAAGTCCTTTGGGCCATCTATAAGACCTTCGGGAATGAT-ATTTTC
65 AGCCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAAGACCTTCGGGCA-GATGA-TTTC
* **
1069048 ACATTAATTTGAAAAATGAGAAAGTGATTTTCAAAGTTTCTCATTTAATGTTTTCAG-AAA-G--
128 ACATGAATTTGAAAAATGAGAAAACGATTTTCAAAGTTTCTCATTTAATGTTTTCAGAAAATGAA
* *
1069109 ----TGAAAAGTAAGAAAATGATTTCCAAATTTTCTTACTTAG
193 ATTTTGAAAAGTAAGAAAGTGATTTCCAAAGTTTCTTACTTAG
* * * * * * * * *
1069148 TAAGTCCTTCGGGTCATCAGTAAGCCTTTCAAGCATGATGATTGAATCCTTCGGGTCATCTGTCA
1 TAAGTCCTCCAGGCCATCAATAAGTCTTTCGAGCATGATGATTAAATCCTTCAGGTCATCTGTAA
* * * * * *
1069213 GGCTTTCGAGCAAGATGATAAGTTCTTCGGTCCATCTATAAGAACTTCGGGCAAGATGCTTTCAT
66 GCCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAAGACCTTCGGGC-AGATGATTTCAC
* *
1069278 ATGGTATTTGTAAGAAAATGAGAAAGCGATTTTCAAAGTTTCTCATTTAA
130 AT-GAATTTG--A-AAAATGAGAAAACGATTTTCAAAGTTTCTCATTTAA
1069328 AATATTTAAA
Statistics
Matches: 740, Mismatches: 105, Indels: 67
0.81 0.12 0.07
Matches are distributed among these distances:
228 142 0.19
229 103 0.14
230 96 0.13
231 1 0.00
232 36 0.05
233 2 0.00
234 2 0.00
235 1 0.00
236 10 0.01
237 156 0.21
238 85 0.11
239 105 0.14
240 1 0.00
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (235 bp):
TAAGTCCTCCAGGCCATCAATAAGTCTTTCGAGCATGATGATTAAATCCTTCAGGTCATCTGTAA
GCCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAAGACCTTCGGGCAGATGATTTCACA
TGAATTTGAAAAATGAGAAAACGATTTTCAAAGTTTCTCATTTAATGTTTTCAGAAAATGAAATT
TTGAAAAGTAAGAAAGTGATTTCCAAAGTTTCTTACTTAG
Found at i:1068564 original size:42 final size:41
Alignment explanation
Indices: 1068452--1068564 Score: 122
Period size: 42 Copynumber: 2.7 Consensus size: 41
1068442 TCTTACTTAG
* *
1068452 TAAGTCCTTCAGGCCAT-TAGTAAGTCTTTCGAGCATGATGAT
1 TAAGTCCTTC-GGCCATCTA-TAAGCCTTTCGAGCAAGATGAT
* * *
1068494 TAAATCCTTCGGGACATCTGTAAGCCTTTCGAGCAAGATGA-
1 TAAGTCCTTC-GGCCATCTATAAGCCTTTCGAGCAAGATGAT
1068535 TAAGTCCTTCGGTCCATCTATAAGACCTTT
1 TAAGTCCTTCGG-CCATCTATAAG-CCTTT
1068565 GGGCAGAATA
Statistics
Matches: 59, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
40 2 0.03
41 18 0.31
42 38 0.64
43 1 0.02
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (41 bp):
TAAGTCCTTCGGCCATCTATAAGCCTTTCGAGCAAGATGAT
Found at i:1069021 original size:41 final size:42
Alignment explanation
Indices: 1068924--1069031 Score: 103
Period size: 42 Copynumber: 2.6 Consensus size: 42
1068914 CTTAGTAATT
* * *
1068924 TCCTTTGGGCCATC-AGTAAGTCTATCGAGCATGATGATTAAA
1 TCCTTTGGGCCATCTA-TAAGCCTTTCGAGCAAGATGATTAAA
* * * * * *
1068966 TCCTTCGGGTCATCTTTAAGCCTTTCTAGTAAGATGA-TAAG
1 TCCTTTGGGCCATCTATAAGCCTTTCGAGCAAGATGATTAAA
1069007 TCCTTTGGGCCATCTATAAGACCTT
1 TCCTTTGGGCCATCTATAAG-CCTT
1069032 CGGGAATGAT
Statistics
Matches: 52, Mismatches: 12, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
41 20 0.38
42 32 0.62
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.34
Consensus pattern (42 bp):
TCCTTTGGGCCATCTATAAGCCTTTCGAGCAAGATGATTAAA
Found at i:1069142 original size:466 final size:465
Alignment explanation
Indices: 1068236--1069327 Score: 1415
Period size: 466 Copynumber: 2.3 Consensus size: 465
1068226 GTCCATCAAC
* * * * *
1068236 AAGTCTTTCGAGCATGATGATTAAATCCTTCAGGTCATCTGTAAGCCGTTCGAGTAAAATGATAA
1 AAGTCTTTCGAGCATGATGATTAAATCCTTC-GGTCATCTGTCAGGCTTTCGAGCAAGATGATAA
* *
1068301 GTCCTTCGGGCCATCTATAAGACCTTCGAGCTAGATGCTTTCACAAGAATTTGAAAAATGAGAAA
65 GTCCTTCGGGTCATCTATAAGACCTGCGAGCTAGATGCTTTCACAAGAATTTGAAAAATGAGAAA
* **
1068366 ACAATTTTCAAAGTTTCTCATTTAATGTTTTCAGAAAATGAAATCTTTGAAAAGTAAGAAAGTGA
130 ACAATTTCCAAAGTTTCTCATTTAATGTTTTCAGAAAATGAAATCTTTGAAAAGTAAGAAAACGA
* * *
1068431 TTTCCAAAGTTTCTTACTTAGTAAGTCCTTCAGGCCATTAGTAAGTCTTTCGAGCATGATGATTA
195 TTACCAAAGTTTCTTACTTAGTAAGTCCTTCAGGCCATCAGTAAGTCTATCGAGCATGATGATTA
*
1068496 AATCCTTCGGGACATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTCGGTCCATCTATAAGAC
260 AATCCTTCGGGACATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAAGAC
* *
1068561 CTTTGGGCAGAATATTTACACATGAATTTGAAAAAAATGAGAAAATGATTTTCAAAGTTTCTCAA
325 CTTCGGGAAGAATATTTACACATGAATTTG-AAAAAATGAGAAAATGATTTTCAAAGTTTCTCAA
* *
1068626 TTAATGTTTTCAGTAAGTGAAAAGTAAGAAAATTATTTCCAAAGTTTCTTACTTAGTAAGTCCTT
389 TTAATGTTTTCAGAAAGTGAAAAGTAAGAAAATGATTTCCAAAGTTTCTTACTTAGTAAGTCCTT
*
1068691 TGGGCCATCAGT
454 CGGGCCATCAGT
* * * *
1068703 AAGTCATTCGAGCATGATGATTAAATCTTTCGG-CTATCTGTCAGGCTTTCGAGCCAGGTGATAA
1 AAGTCTTTCGAGCATGATGATTAAATCCTTCGGTC-ATCTGTCAGGCTTTCGAGCAAGATGATAA
* * * **
1068767 GTCCTTCGGGTCATCCATAAGACCTGC-AGGTAGGATGTTTTCACGTGAATTTTGAAAAATGAGA
65 GTCCTTCGGGTCATCTATAAGACCTGCGAGCTA-GATGCTTTCACAAGAA-TTTGAAAAATGAGA
*** * * *
1068831 AAGTTATTTCCAAAGTTTCTTATTTAATGCATTTT-A-AAAATGAAATTTTTTAAAAGTAAGAAA
128 AAACAATTTCCAAAGTTTCTCATTTAATG--TTTTCAGAAAATGAAATCTTTGAAAAGTAAGAAA
*** * **
1068894 ACGATTACTTGAGTTTCTTACTTAGTAATTTCCTTTGGGCCATCAGTAAGTCTATCGAGCATGAT
191 ACGATTACCAAAGTTTCTTACTTAGTAA-GTCCTTCAGGCCATCAGTAAGTCTATCGAGCATGAT
* * * * *
1068959 GATTAAATCCTTCGGGTCATCTTTAAGCCTTTCTAGTAAGATGATAAGTCCTTTGGGCCATCTAT
255 GATTAAATCCTTCGGGACATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTAT
* * *
1069024 AAGACCTTCGGGAATG-ATATTTTCACATTAATTTG-AAAAATGAGAAAGTGATTTTCAAAGTTT
320 AAGACCTTCGGGAA-GAATATTTACACATGAATTTGAAAAAATGAGAAAATGATTTTCAAAGTTT
* *
1069087 CTCATTTAATGTTTTCAGAAAGTGAAAAGTAAGAAAATGATTTCCAAATTTTCTTACTTAGTAAG
384 CTCAATTAATGTTTTCAGAAAGTGAAAAGTAAGAAAATGATTTCCAAAGTTTCTTACTTAGTAAG
*
1069152 TCCTTCGGGTCATCAGT
449 TCCTTCGGGCCATCAGT
* * *
1069169 AAGCCTTTCAAGCATGATGATTGAATCCTTCGGGTCATCTGTCAGGCTTTCGAGCAAGATGATAA
1 AAGTCTTTCGAGCATGATGATTAAATCCTTC-GGTCATCTGTCAGGCTTTCGAGCAAGATGATAA
* * * * * * * *
1069234 GTTCTTC-GGTCCATCTATAAGAACTTCGGGCAAGATGCTTTCATATGGTATTTGTAAGAAAATG
65 GTCCTTCGGGT-CATCTATAAGACCTGCGAGCTAGATGCTTTCACA-AGAATTTG--A-AAAATG
* * *
1069298 AGAAAGCGATTTTCAAAGTTTCTCATTTAA
125 AGAAAACAATTTCCAAAGTTTCTCATTTAA
1069328 AATATTTAAA
Statistics
Matches: 536, Mismatches: 74, Indels: 27
0.84 0.12 0.04
Matches are distributed among these distances:
465 5 0.01
466 193 0.36
467 175 0.33
468 125 0.23
469 6 0.01
470 32 0.06
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (465 bp):
AAGTCTTTCGAGCATGATGATTAAATCCTTCGGTCATCTGTCAGGCTTTCGAGCAAGATGATAAG
TCCTTCGGGTCATCTATAAGACCTGCGAGCTAGATGCTTTCACAAGAATTTGAAAAATGAGAAAA
CAATTTCCAAAGTTTCTCATTTAATGTTTTCAGAAAATGAAATCTTTGAAAAGTAAGAAAACGAT
TACCAAAGTTTCTTACTTAGTAAGTCCTTCAGGCCATCAGTAAGTCTATCGAGCATGATGATTAA
ATCCTTCGGGACATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAAGACC
TTCGGGAAGAATATTTACACATGAATTTGAAAAAATGAGAAAATGATTTTCAAAGTTTCTCAATT
AATGTTTTCAGAAAGTGAAAAGTAAGAAAATGATTTCCAAAGTTTCTTACTTAGTAAGTCCTTCG
GGCCATCAGT
Done.