genome.fa.s1583.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001583.1 Hibiscus syriacus cultivar Beakdansim tig00003155_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74790

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2123--2201	38	2.0	40	85	4	108	44	5	10	40	1.60
2201--2473	34	7.9	35	77	16	268	42	2	9	45	1.51
2201--2445	69	3.5	70	80	10	290	41	2	10	45	1.53
3765--3804	5	7.6	5	83	10	53	20	5	0	75	0.99
3732--3804	26	2.8	27	77	8	71	20	8	0	71	1.11
3947--3972	5	5.2	5	100	0	52	19	0	0	80	0.71
9877--9946	34	2.1	34	89	5	108	20	32	15	31	1.94
12226--12282	28	2.0	28	86	6	80	29	19	15	35	1.93
12609--12683	31	2.4	31	95	0	132	34	17	8	40	1.79
13460--13557	36	2.8	35	79	3	106	41	24	2	31	1.66
14453--14488	17	2.1	17	100	0	72	22	0	30	47	1.52
17571--17610	19	2.1	19	90	0	62	27	25	27	20	1.99
18629--18698	31	2.3	31	87	5	97	30	25	10	34	1.89
18642--18705	31	2.1	30	97	2	119	25	28	12	34	1.92
20670--20735	31	2.1	31	91	0	105	37	10	25	25	1.88
25510--25665	29	5.4	29	80	9	104	28	3	14	53	1.56
25573--25681	29	3.8	29	93	0	173	23	2	18	55	1.56
25641--25708	29	2.3	29	89	0	100	33	4	14	47	1.65
25576--25708	58	2.3	58	82	0	158	27	3	15	52	1.60
25742--25831	29	3.1	29	95	1	155	40	7	3	48	1.48
27106--27198	3	32.0	3	93	6	165	65	0	0	34	0.93
27343--27598	82	3.2	80	85	6	311	24	16	21	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27374--27605	82	2.8	80	87	5	313	25	15	21	37	1.92
27687--27938	88	2.8	88	85	5	314	28	18	18	33	1.95
27867--28015	76	2.0	76	85	2	201	30	19	18	30	1.96
28367--28469	42	2.5	42	83	10	131	33	23	19	24	1.97
28618--28717	42	2.4	42	88	1	139	32	22	20	26	1.98
29136--29242	42	2.6	41	77	2	124	32	21	19	26	1.97
28096--29361	251	5.0	253	87	3	1672	34	17	14	33	1.90
31671--31707	2	18.5	2	100	0	74	48	0	0	51	1.00
31691--31898	97	2.1	96	85	6	276	34	17	13	34	1.89
36547--36588	15	2.6	16	82	17	52	61	0	4	33	1.17
38435--38502	3	22.7	3	100	0	136	66	0	0	33	0.92
40843--40893	19	2.6	20	87	3	68	43	21	17	17	1.88
40843--41180	20	16.6	20	77	6	160	39	18	22	20	1.93
40947--41178	40	5.7	40	80	4	230	37	16	23	21	1.94
40988--41145	83	1.9	83	84	0	208	36	17	23	22	1.94
40947--41170	103	2.2	103	90	0	349	37	16	24	22	1.94
41167--41210	20	2.2	20	91	0	70	54	15	18	11	1.70
41026--41200	60	2.9	61	77	7	151	38	17	25	18	1.92
41288--41331	6	7.5	6	97	2	81	31	52	15	0	1.44
42012--42048	6	6.5	6	96	3	60	0	16	54	29	1.43
42126--42169	20	2.2	20	91	0	70	11	18	15	54	1.70
42156--42493	20	16.6	20	77	6	151	18	23	18	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42158--42368	40	5.2	40	85	3	278	21	26	17	35	1.95
42443--42493	19	2.6	20	90	3	77	15	17	23	43	1.88
43627--44446	407	2.0	407	99	0	1631	33	24	13	29	1.93
53817--54089	136	2.0	136	98	0	528	28	27	18	25	1.98
54286--54327	19	2.2	19	95	0	75	30	30	16	21	1.95
61841--61874	13	2.6	13	90	0	50	67	5	23	2	1.26
62268--62296	14	2.0	15	93	6	51	27	3	20	48	1.66
62885--62941	24	2.5	22	78	18	62	21	1	14	63	1.39
65513--65555	12	3.8	12	81	6	54	34	32	9	23	1.87
68192--68315	43	2.9	43	95	0	212	20	19	17	42	1.89
68417--68445	15	1.9	15	100	0	58	48	20	3	27	1.66
69704--69745	21	2.0	21	100	0	84	19	28	33	19	1.96
71507--71944	123	3.6	123	87	5	595	35	19	18	25	1.95
71507--71977	82	5.8	82	86	6	618	35	19	18	26	1.95
71507--72005	205	2.5	203	85	4	634	34	19	19	26	1.96
72725--72857	29	4.6	29	74	7	119	19	11	9	59	1.59
72753--72894	57	2.4	59	84	2	189	19	11	10	58	1.61
72705--72873	87	1.9	87	89	4	261	19	10	10	59	1.58
73905--73935	15	2.1	15	100	0	62	51	6	12	29	1.65

Tables:   1

The End!