genome.fa.s1584.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001584.1 Hibiscus syriacus cultivar Beakdansim tig00003160_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97532

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
377--424	21	2.3	21	85	0	60	25	18	29	27	1.98
419--471	23	2.3	23	96	0	97	20	16	28	33	1.95
3154--3205	19	2.5	22	81	9	65	26	15	30	26	1.96
10393--10609	110	2.0	108	81	7	251	46	14	15	23	1.82
13355--13534	60	3.0	61	78	4	186	33	23	5	37	1.77
13655--13824	60	2.8	60	77	11	177	41	2	22	33	1.69
14129--14275	75	2.0	75	97	0	276	28	14	3	53	1.56
14135--14301	75	2.3	75	87	4	232	31	14	3	50	1.59
16715--16961	37	6.7	37	89	5	367	47	2	4	45	1.36
16715--16994	38	7.4	40	84	11	221	46	2	4	46	1.38
17060--17127	4	17.8	4	75	24	58	26	1	0	72	0.94
17061--17133	24	2.8	25	78	19	78	26	1	0	72	0.93
18128--18174	23	2.0	23	91	0	76	21	8	8	61	1.51
19451--19480	15	2.0	15	93	0	51	56	0	10	33	1.32
20519--20573	3	18.0	3	96	3	101	65	0	34	0	0.93
23380--23452	37	2.0	37	91	0	119	19	19	15	46	1.84
25998--26072	3	25.0	3	88	0	114	38	0	0	61	0.96
26005--26081	15	5.6	14	78	15	81	41	0	0	58	0.98
28686--28710	9	2.8	9	100	0	50	48	0	0	52	1.00
31467--31498	15	2.1	15	94	0	55	25	18	9	46	1.79
39158--39202	16	2.8	16	83	10	56	28	8	6	55	1.56
39987--40461	83	5.7	83	93	0	815	27	12	24	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39993--40461	166	2.8	166	99	0	911	26	12	23	36	1.91
41463--41506	23	1.9	23	95	0	79	47	13	25	13	1.79
41304--41970	113	6.0	113	85	4	847	37	15	18	29	1.91
41304--41969	223	3.0	224	88	3	931	37	15	18	29	1.91
41304--41967	336	2.0	332	86	5	928	37	15	18	29	1.91
41897--41952	17	3.2	17	69	18	51	51	8	19	19	1.73
41935--42118	84	2.2	82	81	3	208	38	16	17	27	1.91
42289--42389	3	34.0	3	97	2	195	33	0	0	66	0.92
44995--45089	6	15.8	6	82	0	100	53	0	25	21	1.46
51098--51133	2	18.0	2	100	0	72	50	0	0	50	1.00
54907--54983	32	2.4	33	89	6	113	41	5	18	35	1.73
54915--54983	33	2.1	32	89	7	104	42	4	20	33	1.72
60859--60963	19	5.2	19	80	13	111	35	5	27	31	1.80
61037--61075	17	2.3	17	95	0	69	38	12	20	28	1.89
61988--62073	21	4.3	19	71	8	64	34	20	20	23	1.96
61988--62073	40	2.2	40	93	0	145	34	20	20	23	1.96
61989--62065	21	3.8	20	72	6	66	35	23	20	20	1.96
62013--62076	19	3.3	19	76	8	74	35	20	20	23	1.96
62936--62991	17	3.4	17	73	14	53	41	0	1	57	1.09
62954--63021	30	2.4	28	82	5	82	39	0	0	60	0.97
63162--63200	17	2.3	17	86	0	51	43	0	2	53	1.14
64799--64864	21	3.1	21	80	8	80	19	30	19	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65522--65548	14	1.9	14	100	0	54	59	7	0	33	1.25
65615--65744	63	2.0	64	88	1	190	36	20	1	41	1.61
65700--65760	23	2.7	23	84	0	86	31	11	0	57	1.34
65807--66697	116	7.7	116	92	1	1484	30	23	24	20	1.98
65807--66697	349	2.6	346	92	2	1473	30	23	24	20	1.98
69851--69911	26	2.2	28	80	5	72	44	0	3	52	1.17
70509--70625	61	1.9	60	85	1	162	24	30	26	17	1.97
71833--71885	22	2.4	22	83	0	61	43	13	20	22	1.86
72528--72645	57	2.1	57	87	3	166	28	24	16	29	1.97
81817--81863	20	2.3	20	81	0	58	14	23	34	27	1.94
92244--92304	3	21.0	3	77	12	65	60	0	6	32	1.22
92152--92304	33	4.8	32	69	18	95	56	2	6	34	1.39
92152--92304	11	13.6	11	69	16	73	56	2	6	34	1.39
92245--92302	27	2.0	27	87	9	80	60	0	6	32	1.23
94423--94470	18	2.8	16	84	12	51	29	20	4	45	1.70

Tables:   1

The End!