genome.fa.s1585.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001585.1 Hibiscus syriacus cultivar Beakdansim tig00003164_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  161413

Tables:   1   

This is table  1  of  1  ( 109 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
733--766	14	2.4	14	90	0	50	23	17	2	55	1.55
2013--2509	251	2.0	245	91	2	805	33	13	14	39	1.85
8938--8985	24	2.0	24	95	0	87	35	37	16	10	1.83
10751--10783	16	2.1	16	94	0	57	27	3	18	51	1.60
14144--14195	24	2.3	23	81	12	63	63	1	0	34	1.06
19328--19352	12	2.1	12	100	0	50	60	8	0	32	1.26
21261--21606	131	2.6	129	79	11	369	29	14	22	33	1.93
21114--21606	263	1.9	265	83	5	647	31	14	20	33	1.93
22080--22260	38	4.7	39	73	7	147	37	13	22	26	1.92
22719--23311	45	13.2	45	81	2	591	41	20	15	22	1.90
23491--23530	19	2.0	20	90	4	64	40	2	25	32	1.69
23701--23729	12	2.4	12	100	0	58	34	34	10	20	1.87
24796--24821	3	8.7	3	100	0	52	0	30	0	69	0.89
24795--24871	14	5.7	13	73	22	61	3	20	0	75	0.96
24811--24873	26	2.4	26	79	12	67	4	17	0	77	0.93
24791--24883	18	5.7	16	75	18	68	3	21	0	75	0.95
33905--34516	233	2.6	233	87	3	872	33	16	17	32	1.92
34312--34717	205	2.0	201	85	5	541	32	16	19	31	1.94
34514--34612	42	2.4	42	83	5	130	26	19	24	30	1.98
35001--35081	42	2.0	41	85	2	108	24	20	19	34	1.96
34517--36119	234	6.9	234	84	2	1946	33	16	16	33	1.92
36843--36971	42	3.3	40	66	26	105	35	33	13	17	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36842--36998	75	2.1	75	96	0	287	37	33	12	17	1.86
38865--39224	131	2.7	131	88	2	483	31	11	16	40	1.85
41215--41250	18	2.0	18	88	0	54	61	0	0	38	0.96
43158--43195	18	2.1	18	90	0	58	60	5	0	34	1.19
43524--43565	17	2.3	18	80	12	50	33	4	0	61	1.17
44047--44204	59	2.7	59	76	4	149	39	6	24	29	1.80
49302--49350	3	16.3	3	95	0	89	63	0	36	0	0.95
50783--50811	14	2.0	15	93	6	51	68	13	3	13	1.33
57411--57468	28	2.1	28	100	0	116	32	31	6	29	1.84
58586--58615	11	2.7	11	94	0	51	53	6	26	13	1.64
59986--60026	2	20.5	2	100	0	82	51	0	0	48	1.00
62886--62917	3	10.7	3	93	0	55	31	0	65	3	1.08
62916--62946	6	5.3	6	96	3	55	48	0	35	16	1.46
63360--63403	17	2.6	17	77	0	52	59	0	0	40	0.98
64557--64590	18	1.9	18	94	5	61	50	0	8	41	1.34
64563--64601	18	2.2	18	86	4	53	56	0	7	35	1.28
66335--66401	23	2.9	23	68	0	71	52	11	19	16	1.74
69035--69074	12	3.2	13	83	16	57	15	7	0	77	0.98
69037--69074	7	5.9	7	90	9	55	15	7	0	76	1.01
79444--79515	33	2.2	33	97	0	135	52	0	5	41	1.24
81362--81405	22	2.0	22	100	0	88	50	0	9	40	1.34
83232--83345	58	1.9	60	91	3	187	30	14	18	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83679--83808	60	2.2	60	87	0	179	35	17	18	28	1.94
86457--86559	53	1.9	53	84	7	138	29	24	7	38	1.83
88322--88546	109	2.1	108	81	8	262	47	22	12	17	1.81
89331--89377	17	3.1	14	78	21	51	74	0	0	25	0.82
89618--89821	86	2.4	87	82	1	257	31	18	18	31	1.95
89729--90021	139	2.1	138	83	5	385	30	15	21	32	1.94
91324--91362	8	4.6	8	84	9	51	0	0	10	89	0.48
91334--91362	15	1.9	15	100	0	58	0	0	10	89	0.48
91357--91405	9	5.4	9	85	9	73	8	12	0	79	0.93
91333--91405	17	4.3	17	82	6	78	5	8	4	82	0.95
91357--91387	8	3.8	8	95	4	53	9	9	0	80	0.90
91349--91417	17	4.0	16	80	15	66	8	13	1	76	1.07
102055--102449	130	3.0	130	90	0	592	39	16	9	33	1.82
108458--108487	2	15.5	2	93	6	53	50	0	0	50	1.00
110053--110092	3	13.3	3	89	0	62	62	0	0	37	0.95
110273--110786	39	13.6	38	77	10	439	22	21	10	45	1.82
110273--110658	78	5.0	78	85	3	485	21	20	11	46	1.81
110273--110786	117	4.5	117	80	8	544	22	21	10	45	1.82
110625--110684	26	2.3	26	91	5	95	21	21	8	48	1.76
110547--110758	104	2.1	102	85	1	280	23	21	8	46	1.79
110837--111087	45	5.5	45	86	5	299	29	19	21	29	1.98
111610--111667	22	2.6	22	88	0	89	34	13	15	36	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115210--115353	72	2.0	72	89	2	218	34	17	21	27	1.96
117810--117842	12	2.8	12	95	0	57	57	0	18	24	1.40
117967--118048	43	1.9	42	87	7	121	36	24	8	30	1.85
121824--121861	3	13.0	3	88	5	60	68	0	2	28	1.03
123108--123152	2	22.0	2	90	4	72	46	2	2	48	1.26
123532--123628	34	2.9	34	93	0	167	38	16	14	30	1.89
123676--123743	31	2.2	31	94	0	118	29	7	19	44	1.77
124218--124250	15	2.1	16	88	5	50	54	15	3	27	1.55
124455--124802	119	2.9	117	83	3	426	41	20	12	25	1.86
131406--131438	15	2.1	16	88	5	50	60	18	0	21	1.36
131625--131987	118	3.1	118	85	0	476	39	22	12	25	1.88
134190--134594	224	1.8	220	89	3	632	33	20	5	40	1.75
135192--135218	14	1.9	14	100	0	54	7	7	25	59	1.51
135730--135759	12	2.6	12	94	5	53	26	20	26	26	1.99
135980--136012	16	2.1	16	94	0	57	6	9	24	60	1.49
137538--137581	21	2.0	22	91	4	72	25	25	18	31	1.97
140413--140472	26	2.3	26	100	0	120	43	3	40	13	1.60
141654--141689	16	2.2	17	95	5	65	58	0	5	36	1.22
145372--145436	13	5.4	12	77	18	57	76	1	20	1	0.94
145372--145455	24	3.5	24	77	14	66	75	3	17	3	1.10
145372--145436	26	2.5	25	80	14	69	76	1	20	1	0.94
145432--145456	10	2.5	10	100	0	50	72	8	12	8	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
145383--145446	13	5.6	11	77	15	60	76	1	18	3	1.00
146948--147565	45	14.0	45	82	6	685	25	16	19	37	1.93
147087--147155	34	2.0	34	97	0	129	24	17	24	33	1.96
147121--147565	179	2.5	180	88	1	633	25	16	20	37	1.93
148636--148836	106	1.9	106	86	0	285	31	17	18	31	1.95
150209--150250	22	2.0	21	85	4	57	71	0	14	14	1.15
152982--153021	19	2.1	18	86	9	53	50	0	0	50	1.00
152979--153023	20	2.5	19	76	16	51	55	0	0	44	0.99
153748--153799	25	2.1	25	92	7	88	26	7	11	53	1.63
155838--155879	21	2.0	21	85	0	57	35	2	23	38	1.68
156424--156468	23	2.0	22	83	12	56	64	2	11	22	1.36
156480--156547	22	2.9	22	82	12	66	72	1	7	19	1.16
156632--156684	27	2.0	25	86	13	72	64	7	0	28	1.21
158173--158252	25	3.0	27	79	18	96	36	10	20	33	1.86
158220--158308	35	2.5	35	96	0	160	30	10	17	41	1.83
158293--158604	65	4.6	66	81	10	312	40	12	19	27	1.87
158426--158705	36	7.9	36	79	11	303	42	15	18	23	1.88
158361--158687	137	2.4	139	89	3	484	42	14	18	25	1.87
158583--158645	21	3.3	21	62	25	57	42	12	19	25	1.86
158764--158834	36	2.0	36	91	0	115	40	14	19	25	1.89
160180--160356	94	1.9	95	86	1	257	31	18	17	32	1.94

Tables:   1

The End!