genome.fa.s1586.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001586.1 Hibiscus syriacus cultivar Beakdansim tig00003165_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75243

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13717--13742	9	2.9	9	100	0	52	76	0	0	23	0.78
16690--16735	23	2.0	24	86	4	67	19	8	10	60	1.55
18006--18043	19	2.0	20	94	5	69	47	23	15	13	1.81
18161--18458	163	1.8	163	91	2	492	47	12	12	26	1.78
18322--18978	183	3.6	182	88	2	951	44	12	15	27	1.83
19367--19412	19	2.4	19	92	0	74	43	0	19	36	1.51
19531--19555	5	5.0	5	100	0	50	20	0	20	60	1.37
20645--20700	24	2.5	22	77	13	60	41	1	7	50	1.40
21368--21406	18	2.2	18	95	0	69	53	0	41	5	1.23
22877--22927	20	2.6	19	90	3	75	29	0	9	60	1.28
22878--22927	19	2.5	20	90	3	75	30	0	10	60	1.30
23270--24532	199	6.3	199	95	0	2211	41	16	14	26	1.87
25837--25862	9	2.9	9	100	0	52	34	30	23	11	1.90
26114--26153	12	3.3	12	89	0	53	42	2	30	25	1.68
27540--29290	200	8.8	200	91	3	2808	44	13	13	27	1.83
27872--28436	179	3.0	179	88	5	797	43	13	14	28	1.83
27540--29243	579	2.9	582	91	3	2763	44	13	14	27	1.83
28048--29290	201	6.2	200	93	0	2083	44	13	14	27	1.83
32247--32492	83	2.9	84	88	4	368	32	15	11	40	1.83
32414--32458	23	2.0	23	90	0	72	40	20	6	33	1.78
34233--34281	20	2.3	22	82	10	66	22	2	12	63	1.39
35355--35408	21	2.5	21	81	3	63	42	1	0	55	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35997--36097	32	3.2	32	67	25	97	31	7	8	51	1.62
36002--36104	36	3.1	36	59	30	84	31	8	8	51	1.63
43677--43728	25	2.1	25	96	0	95	46	7	17	28	1.75
47964--48080	58	2.0	58	100	0	234	52	8	13	25	1.69
49625--49665	2	19.5	2	90	9	64	46	0	48	4	1.23
52257--52445	95	2.0	95	95	0	342	38	20	17	23	1.93
55283--55316	6	5.7	6	100	0	68	14	0	0	85	0.60
58664--58701	7	5.6	7	82	17	53	55	2	0	42	1.14
58665--58702	20	1.9	19	94	5	67	52	2	0	44	1.14
60364--61518	68	17.0	68	92	1	1791	31	16	24	28	1.96
60364--62088	204	8.6	204	89	2	2641	31	16	24	27	1.96
61465--61567	49	2.1	49	94	0	179	32	14	24	29	1.95
61392--61635	117	2.1	117	93	0	416	31	16	24	27	1.96
61509--62088	68	8.6	68	91	0	912	31	16	25	27	1.96
61329--61703	185	2.0	185	92	1	626	32	16	24	27	1.96
62042--62263	81	2.7	81	85	2	268	33	13	24	28	1.93
64740--65060	42	7.9	42	77	8	254	33	19	19	26	1.96
64853--64998	75	1.9	77	81	2	179	36	20	17	25	1.94
64930--65063	40	3.3	42	82	4	132	33	17	21	26	1.96
67949--68008	21	2.8	21	79	18	61	16	5	3	75	1.12
70615--70870	95	2.7	95	83	5	318	34	18	16	30	1.94
72254--72355	29	3.5	29	94	0	177	30	15	10	43	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72341--72672	37	9.3	36	74	9	279	25	19	13	40	1.89
72312--72705	175	2.2	176	88	3	582	26	19	13	40	1.88
72517--72672	73	2.1	72	86	1	213	25	19	13	41	1.88
72788--72872	36	2.4	36	84	2	109	22	20	15	42	1.89
72919--73012	37	2.6	36	82	9	104	43	17	9	29	1.80
73207--73232	11	2.4	11	100	0	52	38	46	0	15	1.46
74003--74277	21	13.2	21	77	9	260	31	23	21	24	1.98
74170--74242	20	3.6	20	78	10	94	34	19	23	23	1.97
74292--74395	21	5.0	21	79	8	122	25	23	22	29	1.99
74293--74395	42	2.5	42	96	0	188	25	23	22	29	1.99
74485--74511	6	4.5	6	100	0	54	33	51	14	0	1.43
75188--75225	20	1.9	20	100	0	76	42	15	21	21	1.89
75131--75241	57	2.0	56	92	5	188	36	19	20	23	1.95

Tables:   1

The End!