genome.fa.s1587.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001587.1 Hibiscus syriacus cultivar Beakdansim tig00003166_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  107487

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1681--1726	12	3.9	12	88	2	58	6	10	6	76	1.16
3806--4446	322	2.0	319	96	1	1176	26	13	21	38	1.90
7363--7387	5	5.0	5	100	0	50	60	0	0	40	0.97
10984--11369	106	3.5	110	86	8	513	30	14	13	41	1.84
11513--11742	73	3.2	73	91	3	367	33	13	13	40	1.84
12007--12056	23	2.2	23	85	0	64	32	18	12	38	1.87
11862--12648	158	5.0	158	91	2	1185	32	13	12	41	1.82
12311--12365	23	2.4	23	81	0	74	34	16	9	40	1.80
11864--12648	309	2.5	313	90	2	1184	32	13	12	41	1.82
12524--12777	128	2.0	129	91	0	411	31	14	13	40	1.85
12750--12809	23	2.6	23	91	0	93	33	16	8	41	1.78
22393--22428	18	2.0	18	100	0	72	44	11	16	27	1.82
23665--23704	21	1.9	21	94	0	71	30	17	15	37	1.90
23662--23737	21	3.6	20	74	13	64	25	17	21	36	1.94
30467--30507	21	2.0	21	85	0	55	31	14	17	36	1.90
40531--40607	31	2.5	31	78	2	82	28	28	25	16	1.97
48344--48420	29	2.6	28	89	4	109	44	23	5	27	1.74
55193--55269	40	1.9	41	91	2	129	51	19	10	18	1.74
59295--59324	2	15.5	2	93	6	53	53	0	0	46	1.00
59439--59471	12	2.6	13	90	4	50	48	3	0	48	1.17
61035--61083	3	16.0	3	79	12	55	36	0	0	63	0.95
67488--67536	20	2.5	20	89	0	80	36	38	20	4	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75365--75496	60	2.2	60	84	4	176	34	17	16	31	1.92
77617--77791	90	2.0	89	91	1	287	36	12	7	44	1.70
88626--88758	60	2.2	60	90	4	205	36	19	15	29	1.92
89381--89483	43	2.4	41	84	12	129	45	0	1	51	1.19
90579--90653	24	3.2	24	70	14	84	49	6	4	40	1.48
90562--90653	46	2.0	46	100	0	184	45	8	4	41	1.55
90562--90633	22	3.2	22	70	14	74	41	9	4	44	1.56
90976--91040	29	2.2	29	86	5	87	55	7	7	29	1.56
92169--92237	36	1.9	36	85	5	95	39	2	7	50	1.45
94401--94435	17	2.1	17	88	0	52	65	0	0	34	0.93
96614--96699	29	3.0	30	71	6	79	29	25	6	38	1.82
96739--96870	60	2.2	60	81	11	155	43	5	15	34	1.70
97638--97675	15	2.5	16	87	8	53	63	0	0	36	0.95
102100--102164	33	2.0	33	100	0	130	27	15	12	44	1.82
103070--103561	54	9.1	54	85	3	505	31	20	19	28	1.97
103976--104032	20	2.9	19	84	7	71	19	28	15	36	1.92
104055--104088	18	1.9	17	88	5	50	26	20	14	38	1.91

Tables:   1

The End!