genome.fa.s1589.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001589.1 Hibiscus syriacus cultivar Beakdansim tig00003169_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  118586

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1469--1554	24	3.6	24	87	0	109	51	19	11	17	1.76
1502--1541	12	3.3	12	85	0	62	50	17	17	15	1.79
3814--3871	14	4.1	14	80	8	64	20	22	29	27	1.99
8313--8354	21	1.9	23	81	18	54	26	21	19	33	1.97
14721--14753	17	1.9	17	88	11	50	75	12	3	9	1.14
21044--21081	3	12.7	3	100	0	76	65	0	0	34	0.93
21279--21744	134	3.5	133	83	3	571	32	19	19	28	1.96
22442--22745	45	6.8	45	78	4	222	42	19	15	22	1.89
22532--22700	89	1.9	89	80	1	194	43	21	13	21	1.87
22716--23321	38	15.8	38	83	4	752	39	16	18	25	1.91
25238--25327	7	12.6	7	75	16	78	3	20	1	75	1.01
25237--25327	29	3.2	29	83	13	109	3	19	1	75	1.00
31582--31641	2	30.0	2	100	0	120	50	0	0	50	1.00
34177--34202	8	3.2	8	100	0	52	88	0	11	0	0.52
34602--34640	16	2.4	16	95	0	69	28	20	20	30	1.98
42126--42238	42	2.7	42	78	5	122	27	22	18	31	1.97
41910--43001	229	4.7	227	83	5	1263	31	16	18	33	1.93
41910--43001	467	2.3	465	85	3	1445	31	16	18	33	1.93
42826--42905	42	1.9	42	86	0	115	23	22	22	31	1.99
53465--53564	24	4.2	24	82	0	119	17	12	17	54	1.72
53465--53564	48	2.1	48	86	0	137	17	12	17	54	1.72
53733--53771	10	3.9	10	82	0	51	15	15	10	58	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53852--54087	110	2.1	110	97	0	454	35	17	15	31	1.92
55851--55886	18	2.0	18	88	0	54	47	2	5	44	1.41
56571--56792	29	7.6	29	79	2	205	52	9	4	34	1.53
56571--56792	87	2.5	86	83	5	250	52	9	4	34	1.53
63749--63941	29	6.7	29	85	0	251	51	12	3	32	1.57
63749--63941	58	3.3	58	91	1	298	51	12	3	32	1.57
63948--63982	18	1.9	18	100	0	70	20	22	40	17	1.92
67082--67120	18	2.2	18	85	0	51	17	20	7	53	1.68
68011--68040	13	2.3	13	100	0	60	33	0	36	30	1.58
69147--69308	52	3.1	53	86	3	204	24	14	20	40	1.90
74666--74715	21	2.5	20	87	9	66	34	12	24	30	1.91
74686--74744	20	3.0	20	75	5	57	38	11	20	28	1.88
75402--75505	54	1.9	53	92	1	172	28	14	18	38	1.90
81265--81302	2	19.0	2	100	0	76	50	0	0	50	1.00
95583--95620	16	2.3	17	86	4	51	7	34	0	57	1.28
96313--96351	16	2.4	16	91	0	60	30	20	17	30	1.96
99395--99433	13	3.0	13	88	0	51	33	15	23	28	1.95
101879--101906	2	14.0	2	100	0	56	50	0	0	50	1.00
105176--105272	43	2.3	43	81	3	115	29	24	12	32	1.92
106080--106122	2	21.5	2	100	0	86	51	0	0	48	1.00
107256--107380	53	2.4	53	94	1	216	25	18	26	29	1.98
111174--111378	103	2.0	101	87	1	293	26	18	25	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112485--113121	323	2.0	323	98	0	1229	26	12	21	39	1.89
116089--116113	5	5.0	5	100	0	50	60	0	0	40	0.97
116529--116569	18	2.2	19	91	4	66	36	4	0	58	1.20

Tables:   1

The End!